Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378490 | XP_013461604.1 | 98.113 | 159 | 3 | 0 | 5 | 163 | 72 | 230 | 1.11e-97 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378490 | sp|P0CB26|Y1089_ARATH | 55.921 | 152 | 65 | 2 | 14 | 163 | 126 | 277 | 1.25e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378490 | A0A072V0T4 | 98.113 | 159 | 3 | 0 | 5 | 163 | 72 | 230 | 5.30e-98 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004980 | Msa0378490 | 0.803605 | 3.219554e-49 | -8.615850e-47 |
| Msa0037250 | Msa0378490 | 0.833333 | 5.665937e-56 | -8.615850e-47 |
| Msa0048150 | Msa0378490 | 0.854289 | 1.358890e-61 | -8.615850e-47 |
| Msa0056470 | Msa0378490 | 0.861580 | 9.284724e-64 | -8.615850e-47 |
| Msa0064350 | Msa0378490 | 0.808212 | 3.459986e-50 | -8.615850e-47 |
| Msa0068020 | Msa0378490 | 0.800821 | 1.203705e-48 | -8.615850e-47 |
| Msa0082280 | Msa0378490 | 0.808141 | 3.582918e-50 | -8.615850e-47 |
| Msa0140110 | Msa0378490 | 0.817643 | 2.965406e-52 | -8.615850e-47 |
| Msa0140650 | Msa0378490 | 0.938500 | 6.077252e-99 | -8.615850e-47 |
| Msa0140820 | Msa0378490 | 0.817530 | 3.143950e-52 | -8.615850e-47 |
| Msa0149190 | Msa0378490 | 0.822328 | 2.512089e-53 | -8.615850e-47 |
| Msa0183460 | Msa0378490 | 0.816132 | 6.475168e-52 | -8.615850e-47 |
| Msa0190590 | Msa0378490 | 0.801323 | 9.506383e-49 | -8.615850e-47 |
| Msa0191050 | Msa0378490 | 0.821916 | 3.129994e-53 | -8.615850e-47 |
| Msa0194480 | Msa0378490 | 0.820312 | 7.331022e-53 | -8.615850e-47 |
| Msa0199690 | Msa0378490 | 0.822808 | 1.942922e-53 | -8.615850e-47 |
| Msa0199880 | Msa0378490 | 0.840359 | 9.120179e-58 | -8.615850e-47 |
| Msa0209350 | Msa0378490 | 0.818418 | 1.980721e-52 | -8.615850e-47 |
| Msa0233350 | Msa0378490 | 0.807690 | 4.469902e-50 | -8.615850e-47 |
| Msa0236270 | Msa0378490 | 0.836132 | 1.119160e-56 | -8.615850e-47 |
| Msa0366890 | Msa0378490 | 0.837054 | 6.516043e-57 | -8.615850e-47 |
| Msa0376300 | Msa0378490 | 0.824177 | 9.297215e-54 | -8.615850e-47 |
| Msa0376450 | Msa0378490 | -0.817548 | 3.114462e-52 | -8.615850e-47 |
| Msa0376690 | Msa0378490 | 0.835224 | 1.900411e-56 | -8.615850e-47 |
| Msa0378490 | Msa0384660 | -0.803552 | 3.301441e-49 | -8.615850e-47 |
| Msa0378490 | Msa0390030 | 0.824652 | 7.188480e-54 | -8.615850e-47 |
| Msa0378490 | Msa0414800 | 0.851311 | 9.637625e-61 | -8.615850e-47 |
| Msa0378490 | Msa0415430 | 0.821509 | 3.887246e-53 | -8.615850e-47 |
| Msa0378490 | Msa0419310 | 0.820982 | 5.144600e-53 | -8.615850e-47 |
| Msa0378490 | Msa0425220 | 0.812374 | 4.378629e-51 | -8.615850e-47 |
| Msa0378490 | Msa0427150 | 0.867821 | 1.031276e-65 | -8.615850e-47 |
| Msa0378490 | Msa0458060 | 0.838174 | 3.362888e-57 | -8.615850e-47 |
| Msa0378490 | Msa0471440 | 0.822909 | 1.840138e-53 | -8.615850e-47 |
| Msa0378490 | Msa0471590 | 0.849692 | 2.746873e-60 | -8.615850e-47 |
| Msa0378490 | Msa0471720 | -0.817873 | 2.631511e-52 | -8.615850e-47 |
| Msa0378490 | Msa0472130 | 0.800715 | 1.265452e-48 | -8.615850e-47 |
| Msa0378490 | Msa0477080 | 0.805016 | 1.636288e-49 | -8.615850e-47 |
| Msa0378490 | Msa0481480 | 0.855490 | 6.092993e-62 | -8.615850e-47 |
| Msa0378490 | Msa0485850 | 0.829853 | 4.079504e-55 | -8.615850e-47 |
| Msa0378490 | Msa0508590 | 0.805366 | 1.382115e-49 | -8.615850e-47 |
| Msa0378490 | Msa0508630 | 0.809219 | 2.107823e-50 | -8.615850e-47 |
| Msa0378490 | Msa0516510 | -0.800488 | 1.407604e-48 | -8.615850e-47 |
| Msa0378490 | Msa0521050 | 0.833550 | 4.999504e-56 | -8.615850e-47 |
| Msa0378490 | Msa0534900 | 0.809914 | 1.495019e-50 | -8.615850e-47 |
| Msa0378490 | Msa0581070 | 0.805362 | 1.384679e-49 | -8.615850e-47 |
| Msa0378490 | Msa0588260 | 0.809923 | 1.488382e-50 | -8.615850e-47 |
| Msa0378490 | Msa0594910 | 0.801925 | 7.153964e-49 | -8.615850e-47 |
| Msa0378490 | Msa0603570 | 0.815385 | 9.501103e-52 | -8.615850e-47 |
| Msa0378490 | Msa0631350 | 0.809953 | 1.466419e-50 | -8.615850e-47 |
| Msa0378490 | Msa0647500 | 0.814680 | 1.361975e-51 | -8.615850e-47 |
| Msa0378490 | Msa0651050 | 0.811246 | 7.707102e-51 | -8.615850e-47 |
| Msa0378490 | Msa0661300 | 0.857372 | 1.707075e-62 | -8.615850e-47 |
| Msa0378490 | Msa0666270 | 0.868154 | 8.062142e-66 | -8.615850e-47 |
| Msa0378490 | Msa0687630 | 0.814949 | 1.186991e-51 | -8.615850e-47 |
| Msa0378490 | Msa0692940 | 0.827927 | 1.193702e-54 | -8.615850e-47 |
| Msa0378490 | Msa0706960 | 0.824245 | 8.961316e-54 | -8.615850e-47 |
| Msa0378490 | Msa0751480 | 0.800271 | 1.558594e-48 | -8.615850e-47 |
| Msa0378490 | Msa0801110 | 0.824909 | 6.252965e-54 | -8.615850e-47 |
| Msa0378490 | Msa0806920 | 0.804732 | 1.875378e-49 | -8.615850e-47 |
| Msa0378490 | Msa0820990 | 0.803881 | 2.821344e-49 | -8.615850e-47 |
| Msa0378490 | Msa0833310 | 0.819571 | 1.082909e-52 | -8.615850e-47 |
| Msa0378490 | Msa0847080 | 0.805962 | 1.036127e-49 | -8.615850e-47 |
| Msa0378490 | Msa0967650 | -0.818233 | 2.181508e-52 | -8.615850e-47 |
| Msa0378490 | Msa1019260 | 0.807742 | 4.357034e-50 | -8.615850e-47 |
| Msa0378490 | Msa1046020 | 0.800888 | 1.166506e-48 | -8.615850e-47 |
| Msa0378490 | Msa1104210 | 0.812926 | 3.316118e-51 | -8.615850e-47 |
| Msa0378490 | Msa1119840 | -0.814011 | 1.913812e-51 | -8.615850e-47 |
| Msa0378490 | Msa1126510 | 0.814781 | 1.293371e-51 | -8.615850e-47 |
| Msa0378490 | Msa1126770 | 0.823708 | 1.197894e-53 | -8.615850e-47 |
| Msa0378490 | Msa1143840 | 0.800566 | 1.357335e-48 | -8.615850e-47 |
| Msa0378490 | Msa1165260 | 0.801840 | 7.448114e-49 | -8.615850e-47 |
| Msa0378490 | Msa1165940 | 0.817691 | 2.891651e-52 | -8.615850e-47 |
| Msa0378490 | Msa1166330 | 0.811677 | 6.213087e-51 | -8.615850e-47 |
| Msa0378490 | Msa1166340 | 0.806388 | 8.427058e-50 | -8.615850e-47 |
| Msa0378490 | Msa1166860 | 0.834114 | 3.613374e-56 | -8.615850e-47 |
| Msa0378490 | Msa1184370 | 0.804437 | 2.161038e-49 | -8.615850e-47 |
| Msa0378490 | Msa1296830 | 0.812609 | 3.889124e-51 | -8.615850e-47 |
| Msa0378490 | Msa1304820 | 0.841285 | 5.214875e-58 | -8.615850e-47 |
| Msa0378490 | Msa1320390 | 0.824719 | 6.930366e-54 | -8.615850e-47 |
| Msa0378490 | Msa1343040 | 0.810816 | 9.552092e-51 | -8.615850e-47 |
| Msa0378490 | Msa1361520 | 0.881027 | 3.375448e-70 | -8.615850e-47 |
| Msa0378490 | Msa1364910 | 0.803725 | 3.040159e-49 | -8.615850e-47 |
| Msa0378490 | Msa1368120 | 0.806354 | 8.569951e-50 | -8.615850e-47 |
| Msa0378490 | Msa1370860 | 0.813676 | 2.269203e-51 | -8.615850e-47 |
| Msa0378490 | Msa1385770 | 0.857257 | 1.846705e-62 | -8.615850e-47 |
| Msa0378490 | Msa1389510 | 0.807322 | 5.348338e-50 | -8.615850e-47 |
| Msa0378490 | Msa1391410 | 0.802464 | 5.540859e-49 | -8.615850e-47 |
| Msa0378490 | Msa1404010 | 0.834571 | 2.775760e-56 | -8.615850e-47 |
| Msa0378490 | Msa1404190 | 0.800158 | 1.643613e-48 | -8.615850e-47 |
| Msa0378490 | Msa1409240 | 0.852722 | 3.830279e-61 | -8.615850e-47 |
| Msa0378490 | Msa1434140 | 0.840870 | 6.700562e-58 | -8.615850e-47 |
| Msa0378490 | Msa1450280 | 0.817617 | 3.004365e-52 | -8.615850e-47 |
| Msa0378490 | Msa1451560 | 0.812713 | 3.691183e-51 | -8.615850e-47 |
| Msa0378490 | Msa1456050 | 0.829280 | 5.623095e-55 | -8.615850e-47 |
| Msa0378490 | Msa1461280 | 0.813228 | 2.845982e-51 | -8.615850e-47 |
| Msa0378490 | Msa1462860 | 0.800299 | 1.538027e-48 | -8.615850e-47 |
| Msa0378490 | Msa1465080 | 0.800722 | 1.261339e-48 | -8.615850e-47 |
| Msa0241780 | Msa0378490 | 0.800418 | 1.454965e-48 | -8.615850e-47 |
| Msa0242410 | Msa0378490 | 0.814688 | 1.356587e-51 | -8.615850e-47 |
| Msa0267970 | Msa0378490 | 0.846848 | 1.678118e-59 | -8.615850e-47 |
| Msa0280430 | Msa0378490 | 0.828216 | 1.016898e-54 | -8.615850e-47 |
| Msa0304590 | Msa0378490 | 0.827663 | 1.381446e-54 | -8.615850e-47 |
| Msa0304660 | Msa0378490 | 0.812807 | 3.520214e-51 | -8.615850e-47 |
| Msa0304960 | Msa0378490 | 0.841652 | 4.173726e-58 | -8.615850e-47 |
| Msa0310030 | Msa0378490 | 0.826800 | 2.224109e-54 | -8.615850e-47 |
| Msa0314720 | Msa0378490 | 0.832253 | 1.050493e-55 | -8.615850e-47 |
| Msa0322890 | Msa0378490 | 0.833040 | 6.699536e-56 | -8.615850e-47 |
| Msa0331700 | Msa0378490 | 0.812050 | 5.152038e-51 | -8.615850e-47 |
| Msa0341360 | Msa0378490 | 0.800296 | 1.540572e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378490 | MtrunA17_Chr3g0130941 | 97.297 | 148 | 4 | 0 | 5 | 152 | 72 | 219 | 1.58e-91 | 265 |
| Msa0378490 | MtrunA17_Chr2g0277951 | 66.013 | 153 | 50 | 2 | 13 | 163 | 121 | 273 | 9.33e-42 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0378490 | AT5G13340.1 | 70.886 | 158 | 42 | 2 | 9 | 163 | 84 | 240 | 3.33e-40 | 135 |
| Msa0378490 | AT1G10890.4 | 55.921 | 152 | 65 | 2 | 14 | 163 | 126 | 277 | 1.27e-21 | 88.6 |
| Msa0378490 | AT1G10890.2 | 53.125 | 160 | 65 | 3 | 14 | 163 | 79 | 238 | 7.51e-21 | 85.9 |
| Msa0378490 | AT1G10890.3 | 53.125 | 160 | 65 | 3 | 14 | 163 | 78 | 237 | 8.11e-21 | 85.9 |
| Msa0378490 | AT1G10890.1 | 53.125 | 160 | 65 | 3 | 14 | 163 | 126 | 285 | 1.92e-20 | 85.5 |
Find 42 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACGGGTAAGAACAAATCT+AGG | 0.320808 | 3_1:-79301197 | Msa0378490:CDS |
| AGATGCTTGAAGAGAATAGA+AGG | 0.347191 | 3_1:-79301371 | Msa0378490:CDS |
| TCAAATATTCATTCAAGGTC+AGG | 0.347673 | 3_1:+79301087 | None:intergenic |
| TACAGTTGTACAGATAAGTT+TGG | 0.351684 | 3_1:+79301124 | None:intergenic |
| CTACAATTTATGATGTCGTC+TGG | 0.373534 | 3_1:-79302395 | None:intergenic |
| AGACGAAGAATTAAAACTAT+TGG | 0.380286 | 3_1:-79302263 | Msa0378490:CDS |
| GTCTCAGAGAAGAGAAGCTC+TGG | 0.388969 | 3_1:-79301337 | Msa0378490:CDS |
| ACAGTTGTACAGATAAGTTT+GGG | 0.401027 | 3_1:+79301125 | None:intergenic |
| AAAGGGAATTAGAGATGATT+CGG | 0.448260 | 3_1:-79301287 | Msa0378490:CDS |
| ATGCTCTTACTGAAGCTAGA+AGG | 0.450504 | 3_1:-79302081 | Msa0378490:CDS |
| GGCGGCTCGGAGAAAGAAGT+TGG | 0.469142 | 3_1:-79301250 | Msa0378490:CDS |
| CAAGGTCAGGGTTTCTAACA+AGG | 0.477265 | 3_1:+79301100 | None:intergenic |
| GACAGAAAGAAGAGGCGGCT+CGG | 0.492446 | 3_1:-79301263 | Msa0378490:CDS |
| TGAAGAGAATAGAAGGAGAG+TGG | 0.496275 | 3_1:-79301364 | Msa0378490:CDS |
| AAGACGAAGAACATGCTAAT+CGG | 0.498353 | 3_1:-79301227 | Msa0378490:CDS |
| CAAATATTCATTCAAGGTCA+GGG | 0.505489 | 3_1:+79301088 | None:intergenic |
| GAAGGAGGAGGAACGACAAA+GGG | 0.506761 | 3_1:-79301304 | Msa0378490:CDS |
| TGTTGAGGAAAAGCTTAATA+CGG | 0.520103 | 3_1:-79302197 | Msa0378490:CDS |
| CGAAGAATTAAAACTATTGG+AGG | 0.522415 | 3_1:-79302260 | Msa0378490:CDS |
| TCGTAAAGAGAGAGAAGAGC+TGG | 0.523303 | 3_1:-79301397 | Msa0378490:CDS |
| AGCTCTGGAACTGCAGAGGA+AGG | 0.525953 | 3_1:-79301322 | Msa0378490:CDS |
| TGCTAATCGGAACAATTCTA+CGG | 0.526223 | 3_1:-79301214 | Msa0378490:CDS |
| GAATATCAAATATTCATTCA+AGG | 0.532054 | 3_1:+79301082 | None:intergenic |
| TACAATTTATGATGTCGTCT+GGG | 0.539257 | 3_1:-79302394 | None:intergenic |
| GGAAGGAGGAGGAACGACAA+AGG | 0.540434 | 3_1:-79301305 | Msa0378490:CDS |
| GCTTAATACGGAGGAAGTCA+AGG | 0.565124 | 3_1:-79302185 | Msa0378490:CDS |
| TACGGGTAAGAACAAATCTA+GGG | 0.569086 | 3_1:-79301196 | Msa0378490:CDS |
| GGAACTGCAGAGGAAGGAGG+AGG | 0.574057 | 3_1:-79301316 | Msa0378490:CDS |
| GCTAATCGGAACAATTCTAC+GGG | 0.589835 | 3_1:-79301213 | Msa0378490:CDS |
| AAATCTAGGGCTAACTCGTA+CGG | 0.599093 | 3_1:-79301183 | Msa0378490:CDS |
| AAGTCAAGGTGGAAATTGAA+AGG | 0.603231 | 3_1:-79302171 | Msa0378490:CDS |
| TCTGGAACTGCAGAGGAAGG+AGG | 0.605899 | 3_1:-79301319 | Msa0378490:CDS |
| ATAAGCTGTATCTCGACAGT+AGG | 0.606429 | 3_1:+79301060 | None:intergenic |
| ATTGAAAGGCGTGTAGCAGA+AGG | 0.606667 | 3_1:-79302157 | Msa0378490:CDS |
| GAGAAGCTCTGGAACTGCAG+AGG | 0.616097 | 3_1:-79301326 | Msa0378490:CDS |
| AAGGTCAGGGTTTCTAACAA+GGG | 0.640048 | 3_1:+79301101 | None:intergenic |
| GATTCGGAGACAGAAAGAAG+AGG | 0.654657 | 3_1:-79301271 | Msa0378490:CDS |
| CAGTTGTACAGATAAGTTTG+GGG | 0.657251 | 3_1:+79301126 | None:intergenic |
| TCGGAGACAGAAAGAAGAGG+CGG | 0.658226 | 3_1:-79301268 | Msa0378490:CDS |
| TGAGGAAAAGCTTAATACGG+AGG | 0.690564 | 3_1:-79302194 | Msa0378490:CDS |
| TAATACGGAGGAAGTCAAGG+TGG | 0.699506 | 3_1:-79302182 | Msa0378490:CDS |
| AGTTGTACAGATAAGTTTGG+GGG | 0.712563 | 3_1:+79301127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTCTTTATCATTTTGTATT+TGG | - | chr3_1:79301101-79301120 | Msa0378490:three_prime_UTR | 20.0% |
| !! | TTTCAAATGTAATTACAGAA+TGG | + | chr3_1:79301426-79301445 | None:intergenic | 20.0% |
| !! | TCTGTAATTACATTTGAAAA+AGG | - | chr3_1:79301427-79301446 | Msa0378490:intron | 20.0% |
| !! | TTGAAATTGTGTTAAATTTC+CGG | - | chr3_1:79301465-79301484 | Msa0378490:intron | 20.0% |
| !! | GTAGTAATTAGATCATAAAA+AGG | - | chr3_1:79301571-79301590 | Msa0378490:intron | 20.0% |
| !!! | TTAGATCATAAAAAGGTTTT+TGG | - | chr3_1:79301578-79301597 | Msa0378490:intron | 20.0% |
| !! | ACAAATCTTGAATCAAATTT+GGG | + | chr3_1:79301619-79301638 | None:intergenic | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | chr3_1:79301620-79301639 | None:intergenic | 20.0% |
| !! | GATAAAGATGTTTAAAGATA+TGG | + | chr3_1:79301664-79301683 | None:intergenic | 20.0% |
| !! | TATCTTTAAACATCTTTATC+TGG | - | chr3_1:79301664-79301683 | Msa0378490:intron | 20.0% |
| !! | ATAGTAATCAAGTCATAAAA+AGG | - | chr3_1:79301739-79301758 | Msa0378490:intron | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | chr3_1:79301620-79301639 | None:intergenic | 20.0% |
| !!! | TAATGGATAAAGATAAGATA+TGG | + | chr3_1:79301832-79301851 | None:intergenic | 20.0% |
| !!! | TGAATACTACTTTTAATGTA+TGG | - | chr3_1:79301940-79301959 | Msa0378490:intron | 20.0% |
| !! | GAATATCAAATATTCATTCA+AGG | + | chr3_1:79302326-79302345 | None:intergenic | 20.0% |
| !!! | GTTCTTTATCATTTTGTATT+TGG | - | chr3_1:79301101-79301120 | Msa0378490:three_prime_UTR | 20.0% |
| !! | TTTCAAATGTAATTACAGAA+TGG | + | chr3_1:79301426-79301445 | None:intergenic | 20.0% |
| !! | TCTGTAATTACATTTGAAAA+AGG | - | chr3_1:79301427-79301446 | Msa0378490:intron | 20.0% |
| !! | TTGAAATTGTGTTAAATTTC+CGG | - | chr3_1:79301465-79301484 | Msa0378490:intron | 20.0% |
| !! | GTAGTAATTAGATCATAAAA+AGG | - | chr3_1:79301571-79301590 | Msa0378490:intron | 20.0% |
| !!! | TTAGATCATAAAAAGGTTTT+TGG | - | chr3_1:79301578-79301597 | Msa0378490:intron | 20.0% |
| !! | ACAAATCTTGAATCAAATTT+GGG | + | chr3_1:79301619-79301638 | None:intergenic | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | chr3_1:79301620-79301639 | None:intergenic | 20.0% |
| !! | GATAAAGATGTTTAAAGATA+TGG | + | chr3_1:79301664-79301683 | None:intergenic | 20.0% |
| !! | TATCTTTAAACATCTTTATC+TGG | - | chr3_1:79301664-79301683 | Msa0378490:intron | 20.0% |
| !! | ATAGTAATCAAGTCATAAAA+AGG | - | chr3_1:79301739-79301758 | Msa0378490:intron | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | chr3_1:79301620-79301639 | None:intergenic | 20.0% |
| !!! | TAATGGATAAAGATAAGATA+TGG | + | chr3_1:79301832-79301851 | None:intergenic | 20.0% |
| !!! | TGAATACTACTTTTAATGTA+TGG | - | chr3_1:79301940-79301959 | Msa0378490:intron | 20.0% |
| !! | GAATATCAAATATTCATTCA+AGG | + | chr3_1:79302326-79302345 | None:intergenic | 20.0% |
| ! | AGACGAAGAATTAAAACTAT+TGG | - | chr3_1:79301142-79301161 | Msa0378490:three_prime_UTR | 25.0% |
| ! | ACAAATAACAAATCGTACAT+TGG | + | chr3_1:79301909-79301928 | None:intergenic | 25.0% |
| ! | AGACGAAGAATTAAAACTAT+TGG | - | chr3_1:79301142-79301161 | Msa0378490:three_prime_UTR | 25.0% |
| ! | ACAAATAACAAATCGTACAT+TGG | + | chr3_1:79301909-79301928 | None:intergenic | 25.0% |
| CGAAGAATTAAAACTATTGG+AGG | - | chr3_1:79301145-79301164 | Msa0378490:three_prime_UTR | 30.0% | |
| !! | GCTTTTCCTCAACATTTTTT+CGG | + | chr3_1:79301202-79301221 | None:intergenic | 30.0% |
| TGTTGAGGAAAAGCTTAATA+CGG | - | chr3_1:79301208-79301227 | Msa0378490:CDS | 30.0% | |
| TAATTACTACTTGTACGAAC+GGG | + | chr3_1:79301561-79301580 | None:intergenic | 30.0% | |
| CTAATTACTACTTGTACGAA+CGG | + | chr3_1:79301562-79301581 | None:intergenic | 30.0% | |
| !! | AAGGTTTTTGGATATTCCAT+AGG | - | chr3_1:79301590-79301609 | Msa0378490:intron | 30.0% |
| AATCAAATTTGGGAATCCTA+TGG | + | chr3_1:79301609-79301628 | None:intergenic | 30.0% | |
| !! | GTACATTGGTTAGGTTTTAA+TGG | + | chr3_1:79301895-79301914 | None:intergenic | 30.0% |
| ! | TAACAAATCGTACATTGGTT+AGG | + | chr3_1:79301904-79301923 | None:intergenic | 30.0% |
| AAAGGGAATTAGAGATGATT+CGG | - | chr3_1:79302118-79302137 | Msa0378490:CDS | 30.0% | |
| ACAGTTGTACAGATAAGTTT+GGG | + | chr3_1:79302283-79302302 | None:intergenic | 30.0% | |
| TACAGTTGTACAGATAAGTT+TGG | + | chr3_1:79302284-79302303 | None:intergenic | 30.0% | |
| CAAATATTCATTCAAGGTCA+GGG | + | chr3_1:79302320-79302339 | None:intergenic | 30.0% | |
| TCAAATATTCATTCAAGGTC+AGG | + | chr3_1:79302321-79302340 | None:intergenic | 30.0% | |
| CGAAGAATTAAAACTATTGG+AGG | - | chr3_1:79301145-79301164 | Msa0378490:three_prime_UTR | 30.0% | |
| !! | GCTTTTCCTCAACATTTTTT+CGG | + | chr3_1:79301202-79301221 | None:intergenic | 30.0% |
| TGTTGAGGAAAAGCTTAATA+CGG | - | chr3_1:79301208-79301227 | Msa0378490:CDS | 30.0% | |
| TAATTACTACTTGTACGAAC+GGG | + | chr3_1:79301561-79301580 | None:intergenic | 30.0% | |
| CTAATTACTACTTGTACGAA+CGG | + | chr3_1:79301562-79301581 | None:intergenic | 30.0% | |
| !! | AAGGTTTTTGGATATTCCAT+AGG | - | chr3_1:79301590-79301609 | Msa0378490:intron | 30.0% |
| AATCAAATTTGGGAATCCTA+TGG | + | chr3_1:79301609-79301628 | None:intergenic | 30.0% | |
| !! | GTACATTGGTTAGGTTTTAA+TGG | + | chr3_1:79301895-79301914 | None:intergenic | 30.0% |
| ! | TAACAAATCGTACATTGGTT+AGG | + | chr3_1:79301904-79301923 | None:intergenic | 30.0% |
| AAAGGGAATTAGAGATGATT+CGG | - | chr3_1:79302118-79302137 | Msa0378490:CDS | 30.0% | |
| ACAGTTGTACAGATAAGTTT+GGG | + | chr3_1:79302283-79302302 | None:intergenic | 30.0% | |
| TACAGTTGTACAGATAAGTT+TGG | + | chr3_1:79302284-79302303 | None:intergenic | 30.0% | |
| CAAATATTCATTCAAGGTCA+GGG | + | chr3_1:79302320-79302339 | None:intergenic | 30.0% | |
| TCAAATATTCATTCAAGGTC+AGG | + | chr3_1:79302321-79302340 | None:intergenic | 30.0% | |
| AGCTATCCGAAAAAATGTTG+AGG | - | chr3_1:79301193-79301212 | Msa0378490:CDS | 35.0% | |
| AAGTCAAGGTGGAAATTGAA+AGG | - | chr3_1:79301234-79301253 | Msa0378490:CDS | 35.0% | |
| ! | GTTACCCTTTTTCTATGAGA+TGG | - | chr3_1:79301374-79301393 | Msa0378490:CDS | 35.0% |
| ATCGCCATCTCATAGAAAAA+GGG | + | chr3_1:79301381-79301400 | None:intergenic | 35.0% | |
| AATCGCCATCTCATAGAAAA+AGG | + | chr3_1:79301382-79301401 | None:intergenic | 35.0% | |
| TGTGTTAAATTTCCGGCAAT+CGG | - | chr3_1:79301472-79301491 | Msa0378490:intron | 35.0% | |
| ! | CATACAAAATTACCGATTGC+CGG | + | chr3_1:79301487-79301506 | None:intergenic | 35.0% |
| AATTACTACTTGTACGAACG+GGG | + | chr3_1:79301560-79301579 | None:intergenic | 35.0% | |
| CCTGATTATCATAGTGCTAA+TGG | + | chr3_1:79301849-79301868 | None:intergenic | 35.0% | |
| CCATTAGCACTATGATAATC+AGG | - | chr3_1:79301846-79301865 | Msa0378490:intron | 35.0% | |
| !! | CATTGGTTAGGTTTTAATGG+TGG | + | chr3_1:79301892-79301911 | None:intergenic | 35.0% |
| ! | TGTGTTTGTTGAAATTCTGC+AGG | - | chr3_1:79301978-79301997 | Msa0378490:intron | 35.0% |
| AGATGCTTGAAGAGAATAGA+AGG | - | chr3_1:79302034-79302053 | Msa0378490:intron | 35.0% | |
| AAGACGAAGAACATGCTAAT+CGG | - | chr3_1:79302178-79302197 | Msa0378490:CDS | 35.0% | |
| TGCTAATCGGAACAATTCTA+CGG | - | chr3_1:79302191-79302210 | Msa0378490:CDS | 35.0% | |
| TACGGGTAAGAACAAATCTA+GGG | - | chr3_1:79302209-79302228 | Msa0378490:CDS | 35.0% | |
| AGTTGTACAGATAAGTTTGG+GGG | + | chr3_1:79302281-79302300 | None:intergenic | 35.0% | |
| CAGTTGTACAGATAAGTTTG+GGG | + | chr3_1:79302282-79302301 | None:intergenic | 35.0% | |
| AGCTATCCGAAAAAATGTTG+AGG | - | chr3_1:79301193-79301212 | Msa0378490:CDS | 35.0% | |
| AAGTCAAGGTGGAAATTGAA+AGG | - | chr3_1:79301234-79301253 | Msa0378490:CDS | 35.0% | |
| ! | GTTACCCTTTTTCTATGAGA+TGG | - | chr3_1:79301374-79301393 | Msa0378490:CDS | 35.0% |
| ATCGCCATCTCATAGAAAAA+GGG | + | chr3_1:79301381-79301400 | None:intergenic | 35.0% | |
| AATCGCCATCTCATAGAAAA+AGG | + | chr3_1:79301382-79301401 | None:intergenic | 35.0% | |
| TGTGTTAAATTTCCGGCAAT+CGG | - | chr3_1:79301472-79301491 | Msa0378490:intron | 35.0% | |
| ! | CATACAAAATTACCGATTGC+CGG | + | chr3_1:79301487-79301506 | None:intergenic | 35.0% |
| AATTACTACTTGTACGAACG+GGG | + | chr3_1:79301560-79301579 | None:intergenic | 35.0% | |
| CCTGATTATCATAGTGCTAA+TGG | + | chr3_1:79301849-79301868 | None:intergenic | 35.0% | |
| CCATTAGCACTATGATAATC+AGG | - | chr3_1:79301846-79301865 | Msa0378490:intron | 35.0% | |
| !! | CATTGGTTAGGTTTTAATGG+TGG | + | chr3_1:79301892-79301911 | None:intergenic | 35.0% |
| ! | TGTGTTTGTTGAAATTCTGC+AGG | - | chr3_1:79301978-79301997 | Msa0378490:intron | 35.0% |
| AGATGCTTGAAGAGAATAGA+AGG | - | chr3_1:79302034-79302053 | Msa0378490:intron | 35.0% | |
| AAGACGAAGAACATGCTAAT+CGG | - | chr3_1:79302178-79302197 | Msa0378490:CDS | 35.0% | |
| TGCTAATCGGAACAATTCTA+CGG | - | chr3_1:79302191-79302210 | Msa0378490:CDS | 35.0% | |
| TACGGGTAAGAACAAATCTA+GGG | - | chr3_1:79302209-79302228 | Msa0378490:CDS | 35.0% | |
| AGTTGTACAGATAAGTTTGG+GGG | + | chr3_1:79302281-79302300 | None:intergenic | 35.0% | |
| CAGTTGTACAGATAAGTTTG+GGG | + | chr3_1:79302282-79302301 | None:intergenic | 35.0% | |
| TGAGGAAAAGCTTAATACGG+AGG | - | chr3_1:79301211-79301230 | Msa0378490:CDS | 40.0% | |
| ATGCTCTTACTGAAGCTAGA+AGG | - | chr3_1:79301324-79301343 | Msa0378490:CDS | 40.0% | |
| TTCTATGAGATGGCGATTGA+AGG | - | chr3_1:79301384-79301403 | Msa0378490:CDS | 40.0% | |
| TCTATGAGATGGCGATTGAA+GGG | - | chr3_1:79301385-79301404 | Msa0378490:CDS | 40.0% | |
| CAAAAATCCTGGTTTCTGCA+GGG | + | chr3_1:79301704-79301723 | None:intergenic | 40.0% | |
| ! | AACCAGGATTTTTGCTCTGT+TGG | - | chr3_1:79301710-79301729 | Msa0378490:intron | 40.0% |
| TGAAGAGAATAGAAGGAGAG+TGG | - | chr3_1:79302041-79302060 | Msa0378490:intron | 40.0% | |
| GCTAATCGGAACAATTCTAC+GGG | - | chr3_1:79302192-79302211 | Msa0378490:CDS | 40.0% | |
| CTACGGGTAAGAACAAATCT+AGG | - | chr3_1:79302208-79302227 | Msa0378490:CDS | 40.0% | |
| ! | AAATCTAGGGCTAACTCGTA+CGG | - | chr3_1:79302222-79302241 | Msa0378490:CDS | 40.0% |
| AAGGTCAGGGTTTCTAACAA+GGG | + | chr3_1:79302307-79302326 | None:intergenic | 40.0% | |
| ATAAGCTGTATCTCGACAGT+AGG | + | chr3_1:79302348-79302367 | None:intergenic | 40.0% | |
| TGAGGAAAAGCTTAATACGG+AGG | - | chr3_1:79301211-79301230 | Msa0378490:CDS | 40.0% | |
| ATGCTCTTACTGAAGCTAGA+AGG | - | chr3_1:79301324-79301343 | Msa0378490:CDS | 40.0% | |
| TTCTATGAGATGGCGATTGA+AGG | - | chr3_1:79301384-79301403 | Msa0378490:CDS | 40.0% | |
| TCTATGAGATGGCGATTGAA+GGG | - | chr3_1:79301385-79301404 | Msa0378490:CDS | 40.0% | |
| CAAAAATCCTGGTTTCTGCA+GGG | + | chr3_1:79301704-79301723 | None:intergenic | 40.0% | |
| ! | AACCAGGATTTTTGCTCTGT+TGG | - | chr3_1:79301710-79301729 | Msa0378490:intron | 40.0% |
| TGAAGAGAATAGAAGGAGAG+TGG | - | chr3_1:79302041-79302060 | Msa0378490:intron | 40.0% | |
| GCTAATCGGAACAATTCTAC+GGG | - | chr3_1:79302192-79302211 | Msa0378490:CDS | 40.0% | |
| CTACGGGTAAGAACAAATCT+AGG | - | chr3_1:79302208-79302227 | Msa0378490:CDS | 40.0% | |
| ! | AAATCTAGGGCTAACTCGTA+CGG | - | chr3_1:79302222-79302241 | Msa0378490:CDS | 40.0% |
| AAGGTCAGGGTTTCTAACAA+GGG | + | chr3_1:79302307-79302326 | None:intergenic | 40.0% | |
| ATAAGCTGTATCTCGACAGT+AGG | + | chr3_1:79302348-79302367 | None:intergenic | 40.0% | |
| GCTTAATACGGAGGAAGTCA+AGG | - | chr3_1:79301220-79301239 | Msa0378490:CDS | 45.0% | |
| TAATACGGAGGAAGTCAAGG+TGG | - | chr3_1:79301223-79301242 | Msa0378490:CDS | 45.0% | |
| ! | ATTGAAAGGCGTGTAGCAGA+AGG | - | chr3_1:79301248-79301267 | Msa0378490:CDS | 45.0% |
| CTATGAGATGGCGATTGAAG+GGG | - | chr3_1:79301386-79301405 | Msa0378490:CDS | 45.0% | |
| GCAAAAATCCTGGTTTCTGC+AGG | + | chr3_1:79301705-79301724 | None:intergenic | 45.0% | |
| CACCAACAGAGCAAAAATCC+TGG | + | chr3_1:79301715-79301734 | None:intergenic | 45.0% | |
| TCGTAAAGAGAGAGAAGAGC+TGG | - | chr3_1:79302008-79302027 | Msa0378490:intron | 45.0% | |
| GATTCGGAGACAGAAAGAAG+AGG | - | chr3_1:79302134-79302153 | Msa0378490:CDS | 45.0% | |
| CAAGGTCAGGGTTTCTAACA+AGG | + | chr3_1:79302308-79302327 | None:intergenic | 45.0% | |
| GCTTAATACGGAGGAAGTCA+AGG | - | chr3_1:79301220-79301239 | Msa0378490:CDS | 45.0% | |
| TAATACGGAGGAAGTCAAGG+TGG | - | chr3_1:79301223-79301242 | Msa0378490:CDS | 45.0% | |
| ! | ATTGAAAGGCGTGTAGCAGA+AGG | - | chr3_1:79301248-79301267 | Msa0378490:CDS | 45.0% |
| CTATGAGATGGCGATTGAAG+GGG | - | chr3_1:79301386-79301405 | Msa0378490:CDS | 45.0% | |
| GCAAAAATCCTGGTTTCTGC+AGG | + | chr3_1:79301705-79301724 | None:intergenic | 45.0% | |
| CACCAACAGAGCAAAAATCC+TGG | + | chr3_1:79301715-79301734 | None:intergenic | 45.0% | |
| TCGTAAAGAGAGAGAAGAGC+TGG | - | chr3_1:79302008-79302027 | Msa0378490:intron | 45.0% | |
| GATTCGGAGACAGAAAGAAG+AGG | - | chr3_1:79302134-79302153 | Msa0378490:CDS | 45.0% | |
| CAAGGTCAGGGTTTCTAACA+AGG | + | chr3_1:79302308-79302327 | None:intergenic | 45.0% | |
| AGATTCTGGGTTCTGCAAGG+TGG | + | chr3_1:79301534-79301553 | None:intergenic | 50.0% | |
| CAGAGATTCTGGGTTCTGCA+AGG | + | chr3_1:79301537-79301556 | None:intergenic | 50.0% | |
| AAATCCTGGTTTCTGCAGGG+TGG | + | chr3_1:79301701-79301720 | None:intergenic | 50.0% | |
| GTCTCAGAGAAGAGAAGCTC+TGG | - | chr3_1:79302068-79302087 | Msa0378490:intron | 50.0% | |
| GAAGGAGGAGGAACGACAAA+GGG | - | chr3_1:79302101-79302120 | Msa0378490:CDS | 50.0% | |
| TCGGAGACAGAAAGAAGAGG+CGG | - | chr3_1:79302137-79302156 | Msa0378490:CDS | 50.0% | |
| AGATTCTGGGTTCTGCAAGG+TGG | + | chr3_1:79301534-79301553 | None:intergenic | 50.0% | |
| CAGAGATTCTGGGTTCTGCA+AGG | + | chr3_1:79301537-79301556 | None:intergenic | 50.0% | |
| AAATCCTGGTTTCTGCAGGG+TGG | + | chr3_1:79301701-79301720 | None:intergenic | 50.0% | |
| GTCTCAGAGAAGAGAAGCTC+TGG | - | chr3_1:79302068-79302087 | Msa0378490:intron | 50.0% | |
| GAAGGAGGAGGAACGACAAA+GGG | - | chr3_1:79302101-79302120 | Msa0378490:CDS | 50.0% | |
| TCGGAGACAGAAAGAAGAGG+CGG | - | chr3_1:79302137-79302156 | Msa0378490:CDS | 50.0% | |
| ACGAACGGGGCAGAGATTCT+GGG | + | chr3_1:79301547-79301566 | None:intergenic | 55.0% | |
| TACGAACGGGGCAGAGATTC+TGG | + | chr3_1:79301548-79301567 | None:intergenic | 55.0% | |
| !! | GAGAAGCTCTGGAACTGCAG+AGG | - | chr3_1:79302079-79302098 | Msa0378490:CDS | 55.0% |
| !! | AGCTCTGGAACTGCAGAGGA+AGG | - | chr3_1:79302083-79302102 | Msa0378490:CDS | 55.0% |
| ! | TCTGGAACTGCAGAGGAAGG+AGG | - | chr3_1:79302086-79302105 | Msa0378490:CDS | 55.0% |
| GGAAGGAGGAGGAACGACAA+AGG | - | chr3_1:79302100-79302119 | Msa0378490:CDS | 55.0% | |
| GACAGAAAGAAGAGGCGGCT+CGG | - | chr3_1:79302142-79302161 | Msa0378490:CDS | 55.0% | |
| ACGAACGGGGCAGAGATTCT+GGG | + | chr3_1:79301547-79301566 | None:intergenic | 55.0% | |
| TACGAACGGGGCAGAGATTC+TGG | + | chr3_1:79301548-79301567 | None:intergenic | 55.0% | |
| !! | GAGAAGCTCTGGAACTGCAG+AGG | - | chr3_1:79302079-79302098 | Msa0378490:CDS | 55.0% |
| !! | AGCTCTGGAACTGCAGAGGA+AGG | - | chr3_1:79302083-79302102 | Msa0378490:CDS | 55.0% |
| ! | TCTGGAACTGCAGAGGAAGG+AGG | - | chr3_1:79302086-79302105 | Msa0378490:CDS | 55.0% |
| GGAAGGAGGAGGAACGACAA+AGG | - | chr3_1:79302100-79302119 | Msa0378490:CDS | 55.0% | |
| GACAGAAAGAAGAGGCGGCT+CGG | - | chr3_1:79302142-79302161 | Msa0378490:CDS | 55.0% | |
| GGAACTGCAGAGGAAGGAGG+AGG | - | chr3_1:79302089-79302108 | Msa0378490:CDS | 60.0% | |
| ! | GGCGGCTCGGAGAAAGAAGT+TGG | - | chr3_1:79302155-79302174 | Msa0378490:CDS | 60.0% |
| GGAACTGCAGAGGAAGGAGG+AGG | - | chr3_1:79302089-79302108 | Msa0378490:CDS | 60.0% | |
| ! | GGCGGCTCGGAGAAAGAAGT+TGG | - | chr3_1:79302155-79302174 | Msa0378490:CDS | 60.0% |
| TGCGCCACCCTGCAGAAACC+AGG | - | chr3_1:79301694-79301713 | Msa0378490:intron | 65.0% | |
| TGCGCCACCCTGCAGAAACC+AGG | - | chr3_1:79301694-79301713 | Msa0378490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79301019 | 79302408 | 79301019 | ID=Msa0378490;Name=Msa0378490 |
| chr3_1 | mRNA | 79301019 | 79302408 | 79301019 | ID=Msa0378490-mRNA-1;Parent=Msa0378490;Name=Msa0378490-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.5|0.66|0.66|1|1|3|157|163 |
| chr3_1 | exon | 79301019 | 79301427 | 79301019 | ID=Msa0378490-mRNA-1:exon:19468;Parent=Msa0378490-mRNA-1 |
| chr3_1 | exon | 79302075 | 79302300 | 79302075 | ID=Msa0378490-mRNA-1:exon:19467;Parent=Msa0378490-mRNA-1 |
| chr3_1 | exon | 79302395 | 79302408 | 79302395 | ID=Msa0378490-mRNA-1:exon:19466;Parent=Msa0378490-mRNA-1 |
| chr3_1 | CDS | 79302395 | 79302408 | 79302395 | ID=Msa0378490-mRNA-1:cds;Parent=Msa0378490-mRNA-1 |
| chr3_1 | CDS | 79302075 | 79302300 | 79302075 | ID=Msa0378490-mRNA-1:cds;Parent=Msa0378490-mRNA-1 |
| chr3_1 | CDS | 79301176 | 79301427 | 79301176 | ID=Msa0378490-mRNA-1:cds;Parent=Msa0378490-mRNA-1 |
| chr3_1 | three_prime_UTR | 79301019 | 79301175 | 79301019 | ID=Msa0378490-mRNA-1:three_prime_utr;Parent=Msa0378490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
