AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0346380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346380 MtrunA17_Chr3g0078301 94.382 178 10 0 55 232 1 178 8.85e-123 345
Msa0346380 MtrunA17_Chr6g0448791 93.258 178 12 0 55 232 1 178 4.53e-121 341
Msa0346380 MtrunA17_Chr4g0037971 80.451 133 25 1 55 186 1 133 4.02e-71 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0346380 AT4G10130.2 52.047 171 75 2 55 225 1 164 5.99e-59 184
Msa0346380 AT4G10130.4 52.047 171 75 2 55 225 1 164 5.99e-59 184
Msa0346380 AT4G10130.1 52.047 171 75 2 55 225 1 164 5.99e-59 184
Msa0346380 AT4G10130.3 52.047 171 75 2 55 225 1 164 5.99e-59 184
Msa0346380 AT4G10130.5 52.047 171 75 2 55 225 1 164 5.99e-59 184

Find 60 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCACCCAATCCCAATTT+TGG 0.188292 3_1:-6773581 None:intergenic
GGAGAGATTGGGTGAGAGTT+TGG 0.195620 3_1:+6771007 Msa0346380:CDS
TGCAGAAGATTTAAGCTTAC+AGG 0.223608 3_1:+6773018 Msa0346380:CDS
TATTGACTGTGTTGTGAATT+TGG 0.239591 3_1:+6771104 Msa0346380:CDS
ACTATTTCCATTTCTCAATA+AGG 0.240811 3_1:-6773146 None:intergenic
CTCGTTGGAATTGCTGAAAA+TGG 0.258071 3_1:+6773117 Msa0346380:CDS
TCATTGTAGAGTTCCAAAAT+TGG 0.288824 3_1:+6773568 Msa0346380:three_prime_UTR
TGACGTTTGGAAGGAGAGAT+TGG 0.311925 3_1:+6770995 Msa0346380:CDS
AATGTCTTCAATAGCTTATC+AGG 0.336890 3_1:-6772851 None:intergenic
GAGAGATTGGGTGAGAGTTT+GGG 0.348356 3_1:+6771008 Msa0346380:CDS
GCTCCTTATCATATAATAAA+CGG 0.369390 3_1:-6772958 None:intergenic
ATCCCGTTTATTATATGATA+AGG 0.385875 3_1:+6772955 Msa0346380:CDS
GGGTATTCCTTATTGAGAAA+TGG 0.387591 3_1:+6773139 Msa0346380:CDS
CATTGTAGAGTTCCAAAATT+GGG 0.398461 3_1:+6773569 Msa0346380:three_prime_UTR
TCGTTGGAATTGCTGAAAAT+GGG 0.404006 3_1:+6773118 Msa0346380:CDS
TTATGAGGTTCTCAATGTTA+AGG 0.412571 3_1:+6772769 Msa0346380:CDS
CTCAATGGTGATACTTTACC+AGG 0.416326 3_1:+6773178 Msa0346380:CDS
TGTACTTGTTTGATCACTGT+TGG 0.420375 3_1:-6772882 None:intergenic
TAGAGTTCCAAAATTGGGAT+TGG 0.424711 3_1:+6773574 Msa0346380:three_prime_UTR
AGCTCGTCTGATACTCAGTA+TGG 0.427425 3_1:+6773237 Msa0346380:CDS
CTCCTTATCATATAATAAAC+GGG 0.433842 3_1:-6772957 None:intergenic
GAGATTTCTCAAGGTTCAAA+AGG 0.441355 3_1:+6772907 Msa0346380:CDS
AGAGTTCCAAAATTGGGATT+GGG 0.447399 3_1:+6773575 Msa0346380:three_prime_UTR
TACAGAAGATAGCAAACTAA+TGG 0.458843 3_1:+6773322 Msa0346380:three_prime_UTR
GACGTTTGGAAGGAGAGATT+GGG 0.466371 3_1:+6770996 Msa0346380:CDS
AATGAAGTGTTGTCAAATAG+AGG 0.466453 3_1:-6773429 None:intergenic
CATTGAGGAAACTCATTATG+AGG 0.469984 3_1:+6772754 Msa0346380:CDS
TTCTCAAGGTTCAAAAGGCA+TGG 0.470586 3_1:+6772912 Msa0346380:CDS
TCGGTTTCGAGAATGACGTT+TGG 0.488543 3_1:+6770982 None:intergenic
CAAGGAAGAATCACGGATCC+TGG 0.489467 3_1:-6773196 None:intergenic
AAGATCAAGGCAGGATGCCT+TGG 0.498725 3_1:+6772985 Msa0346380:CDS
TTCTGCAACTTCAGCAGCCA+AGG 0.504537 3_1:-6773002 None:intergenic
TTCATTGAATTGCGTATCGC+AGG 0.505034 3_1:+6773446 Msa0346380:three_prime_UTR
AATAGTATATCTATACTCAA+TGG 0.536490 3_1:+6773163 Msa0346380:CDS
TCTTGACAATCATGGCATTG+AGG 0.539470 3_1:+6772739 Msa0346380:CDS
AGTTCATAATCAACAGTGGC+TGG 0.539856 3_1:-6773717 None:intergenic
TCTCAAGGTTCAAAAGGCAT+GGG 0.543905 3_1:+6772913 Msa0346380:CDS
ATAAGGAGCTGCAAAGATCA+AGG 0.544696 3_1:+6772972 Msa0346380:CDS
TTTCGAGAATGACGTTTGGA+AGG 0.545746 3_1:+6770986 None:intergenic
GCATTGTGAGACAGTGGAAT+GGG 0.556000 3_1:+6771035 Msa0346380:CDS
TTACTTCTCTGTCGACTCGT+TGG 0.561601 3_1:+6773102 Msa0346380:CDS
GTTCAAATTTCTCCATGCTA+CGG 0.568079 3_1:+6773398 Msa0346380:three_prime_UTR
GGAGCTGCAAAGATCAAGGC+AGG 0.571621 3_1:+6772976 Msa0346380:CDS
GAGTTGTGGAAAGTAGCAAA+TGG 0.578255 3_1:+6773376 Msa0346380:three_prime_UTR
AAAATGATTCTTGACAATCA+TGG 0.583294 3_1:+6772731 Msa0346380:CDS
GGATCCGTGATTCTTCCTTG+TGG 0.587718 3_1:+6773199 Msa0346380:CDS
GTGTTGTGAATTGCGAGTTG+TGG 0.594684 3_1:+6773362 Msa0346380:three_prime_UTR
ATTGGGTGAGAGTTTGGGCA+TGG 0.595244 3_1:+6771013 Msa0346380:CDS
AAGTACAGAGAGATTTCTCA+AGG 0.599599 3_1:+6772898 Msa0346380:CDS
GAGGCTATAGTACCGTAGCA+TGG 0.619617 3_1:-6773410 None:intergenic
GGCATTGTGAGACAGTGGAA+TGG 0.620083 3_1:+6771034 Msa0346380:CDS
TTGTGAATTTGGTTAAGCAA+AGG 0.624370 3_1:+6771115 Msa0346380:CDS
CGTTGGAATTGCTGAAAATG+GGG 0.627347 3_1:+6773119 Msa0346380:CDS
GGCATGGCATTGTGAGACAG+TGG 0.662535 3_1:+6771029 Msa0346380:CDS
AGATCCACAAGGAAGAATCA+CGG 0.662581 3_1:-6773203 None:intergenic
GTAAACTGAGTACAGCACTT+CGG 0.681561 3_1:-6772826 None:intergenic
AATTGATTATAATAAGTGAG+TGG 0.699620 3_1:-6773615 None:intergenic
CAGAGAAGTAATCACCACAT+CGG 0.701949 3_1:-6773090 None:intergenic
TAGTAGTTCATAATCAACAG+TGG 0.707196 3_1:-6773721 None:intergenic
TTTAACGAACAAGATCCACA+AGG 0.727941 3_1:-6773214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATAATTTTGTATGAATT+TGG + chr3_1:6771246-6771265 Msa0346380:intron 10.0%
!! ATTTAAATATCAATATAAGT+CGG - chr3_1:6771519-6771538 None:intergenic 10.0%
!!! ACTAGATTTTTTTTTTTTTT+AGG - chr3_1:6771778-6771797 None:intergenic 10.0%
!!! ATTTCAAATTATAGAATTTT+GGG - chr3_1:6772109-6772128 None:intergenic 10.0%
!!! TATTTCAAATTATAGAATTT+TGG - chr3_1:6772110-6772129 None:intergenic 10.0%
!! TTTAAATATCAATATAAGTC+GGG - chr3_1:6771518-6771537 None:intergenic 15.0%
!! AAAAAAAAAAAAATCTAGTG+TGG + chr3_1:6771779-6771798 Msa0346380:intron 15.0%
!!! TTTCAAATTATAGAATTTTG+GGG - chr3_1:6772108-6772127 None:intergenic 15.0%
!!! TGTATTCATTAATTTGATAA+TGG + chr3_1:6772139-6772158 Msa0346380:intron 15.0%
!! TTAAATATCAATATAAGTCG+GGG - chr3_1:6771517-6771536 None:intergenic 20.0%
!! CAATTGTAAATATATAGACT+CGG - chr3_1:6771714-6771733 None:intergenic 20.0%
!!! TTTTTTAGGAAATTAACGAA+GGG - chr3_1:6771764-6771783 None:intergenic 20.0%
!!! TTTTTTTAGGAAATTAACGA+AGG - chr3_1:6771765-6771784 None:intergenic 20.0%
!! AGTGTTAATTTCATGATTAA+TGG - chr3_1:6772019-6772038 None:intergenic 20.0%
!!! TTCAAATTATAGAATTTTGG+GGG - chr3_1:6772107-6772126 None:intergenic 20.0%
!! AAAGCATAAAAATGAGATTA+TGG - chr3_1:6772210-6772229 None:intergenic 20.0%
!!! ATGAATATGTTAGTGTTTTT+CGG + chr3_1:6772432-6772451 Msa0346380:intron 20.0%
!! AGTTTAAAAAAACATTCAGA+AGG - chr3_1:6772523-6772542 None:intergenic 20.0%
!! AATAGTATATCTATACTCAA+TGG + chr3_1:6773163-6773182 Msa0346380:CDS 20.0%
!! AATTGATTATAATAAGTGAG+TGG - chr3_1:6773618-6773637 None:intergenic 20.0%
!! TTCACATTTGAATCATTTTC+AGG + chr3_1:6772361-6772380 Msa0346380:intron 25.0%
!! TCACATTTGAATCATTTTCA+GGG + chr3_1:6772362-6772381 Msa0346380:intron 25.0%
! ATCATGTTTCAATTCAAACA+GGG - chr3_1:6772406-6772425 None:intergenic 25.0%
! AATCATGTTTCAATTCAAAC+AGG - chr3_1:6772407-6772426 None:intergenic 25.0%
! AACTAAAATTACGATTATCG+TGG + chr3_1:6772591-6772610 Msa0346380:intron 25.0%
!!! GATTTTAGGATTTGTGAAAT+AGG + chr3_1:6772613-6772632 Msa0346380:intron 25.0%
! AAAATGATTCTTGACAATCA+TGG + chr3_1:6772731-6772750 Msa0346380:CDS 25.0%
! ATCCCGTTTATTATATGATA+AGG + chr3_1:6772955-6772974 Msa0346380:CDS 25.0%
! CTCCTTATCATATAATAAAC+GGG - chr3_1:6772960-6772979 None:intergenic 25.0%
! GCTCCTTATCATATAATAAA+CGG - chr3_1:6772961-6772980 None:intergenic 25.0%
! ACTATTTCCATTTCTCAATA+AGG - chr3_1:6773149-6773168 None:intergenic 25.0%
!!! CACAAGATTTTTTTCAGTAA+TGG - chr3_1:6773526-6773545 None:intergenic 25.0%
! CATTACTGAAAAAAATCTTG+TGG + chr3_1:6773524-6773543 Msa0346380:three_prime_UTR 25.0%
!! GAAATCGTTTCAATTTTTGT+TGG - chr3_1:6773670-6773689 None:intergenic 25.0%
! TATTGACTGTGTTGTGAATT+TGG + chr3_1:6771104-6771123 Msa0346380:CDS 30.0%
TTGTGAATTTGGTTAAGCAA+AGG + chr3_1:6771115-6771134 Msa0346380:CDS 30.0%
!! ATTGAGAAGTGCTATGAATT+TGG + chr3_1:6771197-6771216 Msa0346380:intron 30.0%
! CTATGAATTTGGTTTAGCAA+AGG + chr3_1:6771208-6771227 Msa0346380:intron 30.0%
TCATCATCTCAACGTTATTA+TGG + chr3_1:6771309-6771328 Msa0346380:intron 30.0%
ACGAACATGTCAAATAATGA+AGG + chr3_1:6771340-6771359 Msa0346380:intron 30.0%
AAAAAATCTAGTGTGGCAAT+TGG + chr3_1:6771786-6771805 Msa0346380:intron 30.0%
AATTCCAAACTCCAAATCAA+TGG + chr3_1:6771823-6771842 Msa0346380:intron 30.0%
GAAAAATTGAAGTAATCGTG+AGG - chr3_1:6771885-6771904 None:intergenic 30.0%
!! TAGAGAGAGTGAAAGTATTA+TGG - chr3_1:6771907-6771926 None:intergenic 30.0%
TGGAAAATAACTTACTGAGA+TGG - chr3_1:6771999-6772018 None:intergenic 30.0%
GAAGAAGTGAAATTAGACTA+GGG - chr3_1:6772067-6772086 None:intergenic 30.0%
TGAAGAAGTGAAATTAGACT+AGG - chr3_1:6772068-6772087 None:intergenic 30.0%
!! TTATAGAATTTTGGGGGAAA+TGG - chr3_1:6772101-6772120 None:intergenic 30.0%
! CACATTTGAATCATTTTCAG+GGG + chr3_1:6772363-6772382 Msa0346380:intron 30.0%
!! TTTTTCGGTCAAATTTTCGT+GGG + chr3_1:6772447-6772466 Msa0346380:intron 30.0%
! TTACGATTATCGTGGATTTT+AGG + chr3_1:6772599-6772618 Msa0346380:intron 30.0%
! TGTCAAGAATCATTTTCACA+AGG - chr3_1:6772727-6772746 None:intergenic 30.0%
TTATGAGGTTCTCAATGTTA+AGG + chr3_1:6772769-6772788 Msa0346380:CDS 30.0%
AATGTCTTCAATAGCTTATC+AGG - chr3_1:6772854-6772873 None:intergenic 30.0%
TACAGAAGATAGCAAACTAA+TGG + chr3_1:6773322-6773341 Msa0346380:three_prime_UTR 30.0%
!! AATGAAGTGTTGTCAAATAG+AGG - chr3_1:6773432-6773451 None:intergenic 30.0%
TCATTGTAGAGTTCCAAAAT+TGG + chr3_1:6773568-6773587 Msa0346380:three_prime_UTR 30.0%
CATTGTAGAGTTCCAAAATT+GGG + chr3_1:6773569-6773588 Msa0346380:three_prime_UTR 30.0%
TAGTAGTTCATAATCAACAG+TGG - chr3_1:6773724-6773743 None:intergenic 30.0%
AGCAAAGGTAATAGTCATGA+TGG + chr3_1:6771130-6771149 Msa0346380:intron 35.0%
!!! TAGTCATGATGGTTTTAGTG+TGG + chr3_1:6771141-6771160 Msa0346380:intron 35.0%
!!! ATGATGGTTTTAGTGTGGTA+AGG + chr3_1:6771146-6771165 Msa0346380:intron 35.0%
! TTTTAGTGTGGTAAGGTTTG+TGG + chr3_1:6771153-6771172 Msa0346380:intron 35.0%
AATACAACAGCTAAAGTGAC+CGG + chr3_1:6771275-6771294 Msa0346380:intron 35.0%
GTAACACTAGACACAAATGA+AGG + chr3_1:6771391-6771410 Msa0346380:intron 35.0%
TTTGATCTTACAGGAGAAAG+AGG - chr3_1:6771856-6771875 None:intergenic 35.0%
TCTCCTGTAAGATCAAATTC+TGG + chr3_1:6771859-6771878 Msa0346380:intron 35.0%
TTTCTCTTCTTCACCACAAA+CGG + chr3_1:6771940-6771959 Msa0346380:intron 35.0%
!! CATTTTCAGGGGTTCTATTT+TGG + chr3_1:6772374-6772393 Msa0346380:intron 35.0%
!! GTTTTTCGGTCAAATTTTCG+TGG + chr3_1:6772446-6772465 Msa0346380:intron 35.0%
!!! AAATTTTCGTGGGTGTTGTT+CGG + chr3_1:6772457-6772476 Msa0346380:intron 35.0%
TCACGTAAATAGTACTACTC+TGG - chr3_1:6772654-6772673 None:intergenic 35.0%
CATTGAGGAAACTCATTATG+AGG + chr3_1:6772754-6772773 Msa0346380:CDS 35.0%
TGTACTTGTTTGATCACTGT+TGG - chr3_1:6772885-6772904 None:intergenic 35.0%
AAGTACAGAGAGATTTCTCA+AGG + chr3_1:6772898-6772917 Msa0346380:CDS 35.0%
GAGATTTCTCAAGGTTCAAA+AGG + chr3_1:6772907-6772926 Msa0346380:CDS 35.0%
TGCAGAAGATTTAAGCTTAC+AGG + chr3_1:6773018-6773037 Msa0346380:CDS 35.0%
TCGTTGGAATTGCTGAAAAT+GGG + chr3_1:6773118-6773137 Msa0346380:CDS 35.0%
GGGTATTCCTTATTGAGAAA+TGG + chr3_1:6773139-6773158 Msa0346380:CDS 35.0%
TTTAACGAACAAGATCCACA+AGG - chr3_1:6773217-6773236 None:intergenic 35.0%
!!! TGACATTTTTTGCATGACTG+AGG + chr3_1:6773276-6773295 Msa0346380:three_prime_UTR 35.0%
GTTCAAATTTCTCCATGCTA+CGG + chr3_1:6773398-6773417 Msa0346380:three_prime_UTR 35.0%
TAGAGTTCCAAAATTGGGAT+TGG + chr3_1:6773574-6773593 Msa0346380:three_prime_UTR 35.0%
AGAGTTCCAAAATTGGGATT+GGG + chr3_1:6773575-6773594 Msa0346380:three_prime_UTR 35.0%
! ATATCACCCAATCCCAATTT+TGG - chr3_1:6773584-6773603 None:intergenic 35.0%
! GATGATGATGTTCCTTACAC+CGG - chr3_1:6771297-6771316 None:intergenic 40.0%
!! TTGGCCATTGATTTGGAGTT+TGG - chr3_1:6771830-6771849 None:intergenic 40.0%
TTACAGGAGAAAGAGGATCT+TGG - chr3_1:6771849-6771868 None:intergenic 40.0%
AGGCCAGAATTTGATCTTAC+AGG - chr3_1:6771865-6771884 None:intergenic 40.0%
CTTTCACTCTCTCTAACTCT+CGG + chr3_1:6771912-6771931 Msa0346380:intron 40.0%
GTGCTCAAAAGTGACTTCAA+TGG + chr3_1:6772488-6772507 Msa0346380:intron 40.0%
CTCAAAAGTGACTTCAATGG+AGG + chr3_1:6772491-6772510 Msa0346380:intron 40.0%
TTCACAAGGTTGTCTGCATT+CGG - chr3_1:6772713-6772732 None:intergenic 40.0%
TCTTGACAATCATGGCATTG+AGG + chr3_1:6772739-6772758 Msa0346380:CDS 40.0%
GTAAACTGAGTACAGCACTT+CGG - chr3_1:6772829-6772848 None:intergenic 40.0%
TTCTCAAGGTTCAAAAGGCA+TGG + chr3_1:6772912-6772931 Msa0346380:CDS 40.0%
! TCTCAAGGTTCAAAAGGCAT+GGG + chr3_1:6772913-6772932 Msa0346380:CDS 40.0%
ATAAGGAGCTGCAAAGATCA+AGG + chr3_1:6772972-6772991 Msa0346380:CDS 40.0%
! CTGTTTTATCAATGCCGATG+TGG + chr3_1:6773076-6773095 Msa0346380:CDS 40.0%
CAGAGAAGTAATCACCACAT+CGG - chr3_1:6773093-6773112 None:intergenic 40.0%
CTCGTTGGAATTGCTGAAAA+TGG + chr3_1:6773117-6773136 Msa0346380:CDS 40.0%
CGTTGGAATTGCTGAAAATG+GGG + chr3_1:6773119-6773138 Msa0346380:CDS 40.0%
CTCAATGGTGATACTTTACC+AGG + chr3_1:6773178-6773197 Msa0346380:CDS 40.0%
AGATCCACAAGGAAGAATCA+CGG - chr3_1:6773206-6773225 None:intergenic 40.0%
GAGTTGTGGAAAGTAGCAAA+TGG + chr3_1:6773376-6773395 Msa0346380:three_prime_UTR 40.0%
TTCATTGAATTGCGTATCGC+AGG + chr3_1:6773446-6773465 Msa0346380:three_prime_UTR 40.0%
AGTTCATAATCAACAGTGGC+TGG - chr3_1:6773720-6773739 None:intergenic 40.0%
TGACGTTTGGAAGGAGAGAT+TGG + chr3_1:6770995-6771014 Msa0346380:CDS 45.0%
GACGTTTGGAAGGAGAGATT+GGG + chr3_1:6770996-6771015 Msa0346380:CDS 45.0%
GAGAGATTGGGTGAGAGTTT+GGG + chr3_1:6771008-6771027 Msa0346380:CDS 45.0%
GCATTGTGAGACAGTGGAAT+GGG + chr3_1:6771035-6771054 Msa0346380:CDS 45.0%
! GAGGATCTTGGCCATTGATT+TGG - chr3_1:6771837-6771856 None:intergenic 45.0%
GGCAGAGAAATGTCAGAAAC+AGG - chr3_1:6772692-6772711 None:intergenic 45.0%
!! TTACTTCTCTGTCGACTCGT+TGG + chr3_1:6773102-6773121 Msa0346380:CDS 45.0%
AGCTCGTCTGATACTCAGTA+TGG + chr3_1:6773237-6773256 Msa0346380:CDS 45.0%
GTGTTGTGAATTGCGAGTTG+TGG + chr3_1:6773362-6773381 Msa0346380:three_prime_UTR 45.0%
GGAGAGATTGGGTGAGAGTT+TGG + chr3_1:6771007-6771026 Msa0346380:CDS 50.0%
ATTGGGTGAGAGTTTGGGCA+TGG + chr3_1:6771013-6771032 Msa0346380:CDS 50.0%
GGCATTGTGAGACAGTGGAA+TGG + chr3_1:6771034-6771053 Msa0346380:CDS 50.0%
CAGCTAAAGTGACCGGTGTA+AGG + chr3_1:6771282-6771301 Msa0346380:intron 50.0%
! ACGAAGGTCTTTGCCGTTTG+TGG - chr3_1:6771956-6771975 None:intergenic 50.0%
AGACCTTCGTTGTCACCATC+TGG + chr3_1:6771966-6771985 Msa0346380:intron 50.0%
GACCTTCGTTGTCACCATCT+GGG + chr3_1:6771967-6771986 Msa0346380:intron 50.0%
AACCCAGATGGTGACAACGA+AGG - chr3_1:6771972-6771991 None:intergenic 50.0%
TGAGATGGAGAGAACCCAGA+TGG - chr3_1:6771984-6772003 None:intergenic 50.0%
AAGATCAAGGCAGGATGCCT+TGG + chr3_1:6772985-6773004 Msa0346380:CDS 50.0%
TTCTGCAACTTCAGCAGCCA+AGG - chr3_1:6773005-6773024 None:intergenic 50.0%
CAAGGAAGAATCACGGATCC+TGG - chr3_1:6773199-6773218 None:intergenic 50.0%
GGATCCGTGATTCTTCCTTG+TGG + chr3_1:6773199-6773218 Msa0346380:CDS 50.0%
GAGGCTATAGTACCGTAGCA+TGG - chr3_1:6773413-6773432 None:intergenic 50.0%
GGCATGGCATTGTGAGACAG+TGG + chr3_1:6771029-6771048 Msa0346380:CDS 55.0%
GGAGCTGCAAAGATCAAGGC+AGG + chr3_1:6772976-6772995 Msa0346380:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 6770994 6773773 6770994 ID=Msa0346380;Name=Msa0346380
chr3_1 mRNA 6770994 6773773 6770994 ID=Msa0346380-mRNA-1;Parent=Msa0346380;Name=Msa0346380-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.33|0.33|1|1|3|503|232
chr3_1 exon 6770994 6771136 6770994 ID=Msa0346380-mRNA-1:exon:1876;Parent=Msa0346380-mRNA-1
chr3_1 exon 6771225 6771229 6771225 ID=Msa0346380-mRNA-1:exon:1877;Parent=Msa0346380-mRNA-1
chr3_1 exon 6772720 6773773 6772720 ID=Msa0346380-mRNA-1:exon:1878;Parent=Msa0346380-mRNA-1
chr3_1 CDS 6770994 6771136 6770994 ID=Msa0346380-mRNA-1:cds;Parent=Msa0346380-mRNA-1
chr3_1 CDS 6771225 6771229 6771225 ID=Msa0346380-mRNA-1:cds;Parent=Msa0346380-mRNA-1
chr3_1 CDS 6772720 6773270 6772720 ID=Msa0346380-mRNA-1:cds;Parent=Msa0346380-mRNA-1
chr3_1 three_prime_UTR 6773271 6773773 6773271 ID=Msa0346380-mRNA-1:three_prime_utr;Parent=Msa0346380-mRNA-1
Gene Sequence

>Msa0346380

ATGACGTTTGGAAGGAGAGATTGGGTGAGAGTTTGGGCATGGCATTGTGAGACAGTGGAATGGGTTTTGCAAGTTCGAAGTAGTGATGATAAGAGTTTACGTGACATTGTTATTGACTGTGTTGTGAATTTGGTTAAGCAAAGCAAAGACAACCTTGTGAAAATGATTCTTGACAATCATGGCATTGAGGAAACTCATTATGAGGTTCTCAATGTTAAGGAAGATGCAGATTATGAAGAAATTCGTGCTAGTTACCGAAGTGCTGTACTCAGTTTACATCCTGATAAGCTATTGAAGACATTTGATACATCCAACAGTGATCAAACAAGTACAGAGAGATTTCTCAAGGTTCAAAAGGCATGGGAAATTCTAAGCGATTCAAGATCCCGTTTATTATATGATAAGGAGCTGCAAAGATCAAGGCAGGATGCCTTGGCTGCTGAAGTTGCAGAAGATTTAAGCTTACAGGATATGACTGTTGAAGATGCTGATGAAGCATTAGAACTGTTTTATCAATGCCGATGTGGTGATTACTTCTCTGTCGACTCGTTGGAATTGCTGAAAATGGGGTATTCCTTATTGAGAAATGGAAATAGTATATCTATACTCAATGGTGATACTTTACCAGGATCCGTGATTCTTCCTTGTGGATCTTGTTCGTTAAAAGCTCGTCTGATACTCAGTATGGATAACAATTGA
Protein sequence

>Msa0346380

MTFGRRDWVRVWAWHCETVEWVLQVRSSDDKSLRDIVIDCVVNLVKQSKDNLVKMILDNHGIEETHYEVLNVKEDADYEEIRASYRSAVLSLHPDKLLKTFDTSNSDQTSTERFLKVQKAWEILSDSRSRLLYDKELQRSRQDALAAEVAEDLSLQDMTVEDADEALELFYQCRCGDYFSVDSLELLKMGYSLLRNGNSISILNGDTLPGSVILPCGSCSLKARLILSMDNN*