AlfalfaGEDB | Msa1178180

M. sativa cultivar zhongmu-4 / Msa1178180

KEGG: K14500
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178180	XP_013444845.1	99.593	491	2	0	1	491	1	491	0.0	1026

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178180	sp\|Q8W4L3\|BSK3_ARATH	80.244	491	95	2	1	491	1	489	0.0	834

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178180	A0A072TZD1	99.593	491	2	0	1	491	1	491	0.0	1026

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa1178180	0.819089	1.394559e-52	-8.615850e-47
Msa0006110	Msa1178180	0.805666	1.195786e-49	-8.615850e-47
Msa0010890	Msa1178180	0.813196	2.893245e-51	-8.615850e-47
Msa0011660	Msa1178180	-0.844947	5.512678e-59	-8.615850e-47
Msa0014710	Msa1178180	0.830531	2.787601e-55	-8.615850e-47
Msa0015390	Msa1178180	0.813618	2.336574e-51	-8.615850e-47
Msa0017510	Msa1178180	0.830063	3.625878e-55	-8.615850e-47
Msa0027230	Msa1178180	0.802330	5.904544e-49	-8.615850e-47
Msa0028640	Msa1178180	0.805697	1.177963e-49	-8.615850e-47
Msa0029310	Msa1178180	0.803710	3.061207e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1178180	MtrunA17_Chr8g0349041	99.593	491	2	0	1	491	1	491	0.0	1026
Msa1178180	MtrunA17_Chr7g0247441	84.756	492	74	1	1	491	1	492	0.0	882
Msa1178180	MtrunA17_Chr8g0386761	75.670	485	116	2	1	483	1	485	0.0	771
Msa1178180	MtrunA17_Chr4g0032361	68.496	492	148	3	1	485	1	492	0.0	715
Msa1178180	MtrunA17_Chr5g0448561	64.468	470	157	4	23	483	48	516	0.0	621
Msa1178180	MtrunA17_Chr4g0054861	61.726	452	169	1	36	483	40	491	0.0	599
Msa1178180	MtrunA17_Chr4g0008911	74.064	374	93	1	1	370	1	374	0.0	580
Msa1178180	MtrunA17_Chr2g0328731	55.705	298	72	6	78	371	2	243	6.20e-103	308
Msa1178180	MtrunA17_Chr2g0328171	35.119	336	179	11	11	314	32	360	2.59e-48	171
Msa1178180	MtrunA17_Chr5g0416311	32.092	349	187	9	9	323	33	365	1.19e-46	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1178180	AT4G00710.1	80.244	491	95	2	1	491	1	489	834
Msa1178180	AT4G00710.2	80.244	491	95	2	1	491	1	489	834
Msa1178180	AT1G63500.1	77.938	485	107	0	1	485	1	485	796
Msa1178180	AT5G41260.1	75.464	485	119	0	1	485	1	485	780
Msa1178180	AT5G59010.1	71.253	487	132	2	1	483	1	483	732
Msa1178180	AT3G54030.1	71.575	489	129	3	1	483	1	485	723
Msa1178180	AT1G01740.2	70.468	491	135	5	1	490	1	482	698
Msa1178180	AT1G01740.1	70.468	491	135	5	1	490	1	482	698
Msa1178180	AT1G01740.5	69.043	491	134	4	1	490	1	474	682
Msa1178180	AT4G35230.1	65.778	450	148	2	39	483	56	504	622

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Find 116 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGCCACCAATGATTT+AGG	0.235401	8_1:-10848222	None:intergenic
AAATGAGAATTGCTGTTAAA+CGG	0.378605	8_1:+10845423	Msa1178180:CDS
AACGGTTTAATAGAAATGCT+TGG	0.479346	8_1:+10845441	Msa1178180:CDS
AAGAATGACTTACATGACTC+GGG	0.526282	8_1:-10847930	None:intergenic
AAGCTATATATTACACTTTC+TGG	0.150839	8_1:-10847865	None:intergenic
AAGGCCTAATCCTAAATCAT+TGG	0.486437	8_1:+10848212	Msa1178180:CDS
AATCCTAGGCTTTCTACTTT+TGG	0.204064	8_1:+10847263	Msa1178180:CDS
AATGACTTACATGACTCGGG+GGG	0.726049	8_1:-10847927	None:intergenic
ACATCTGAAGATTTCTGTCC+CGG	0.494019	8_1:-10848095	None:intergenic
ACCTCGGTTTCTTTCTGAAG+AGG	0.521522	8_1:-10848249	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTAGCTCAAATTCTTTC+TGG	+	chr8_1:10844039-10844058	Msa1178180:five_prime_UTR	30.0%
TCTTAGCTCAAATTCTTTCT+GGG	+	chr8_1:10844040-10844059	Msa1178180:five_prime_UTR	30.0%
TGTAAATGCTGTTCAAAATG+TGG	+	chr8_1:10844107-10844126	Msa1178180:five_prime_UTR	30.0%
TGTCATTGGAAGAAGTTTAA+AGG	+	chr8_1:10844220-10844239	Msa1178180:five_prime_UTR	30.0%
GTCTAAGTGAAGCTATAAAA+GGG	-	chr8_1:10844911-10844930	None:intergenic	30.0%
AGTCTAAGTGAAGCTATAAA+AGG	-	chr8_1:10844912-10844931	None:intergenic	30.0%
GGTAGATTCATATCTTATTC+TGG	+	chr8_1:10845175-10845194	Msa1178180:intron	30.0%
AGAAAATGATGATAGAAGTG+AGG	+	chr8_1:10845262-10845281	Msa1178180:intron	30.0%
AACGGTTTAATAGAAATGCT+TGG	+	chr8_1:10845441-10845460	Msa1178180:CDS	30.0%
AGTGTGGTTGAATAAATCAT+TGG	-	chr8_1:10845504-10845523	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	10843995	10849923	10843995	ID=Msa1178180;Name=Msa1178180
chr8_1	mRNA	10843995	10849923	10843995	ID=Msa1178180-mRNA-1;Parent=Msa1178180;Name=Msa1178180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=379\|1\|1\|1\|0.9\|0.81\|11\|57\|491
chr8_1	exon	10843995	10844271	10843995	ID=Msa1178180-mRNA-1:exon:3750;Parent=Msa1178180-mRNA-1
chr8_1	exon	10844988	10845171	10844988	ID=Msa1178180-mRNA-1:exon:3751;Parent=Msa1178180-mRNA-1
chr8_1	exon	10845264	10845484	10845264	ID=Msa1178180-mRNA-1:exon:3752;Parent=Msa1178180-mRNA-1
chr8_1	exon	10846204	10846339	10846204	ID=Msa1178180-mRNA-1:exon:3753;Parent=Msa1178180-mRNA-1
chr8_1	exon	10847050	10847183	10847050	ID=Msa1178180-mRNA-1:exon:3754;Parent=Msa1178180-mRNA-1
chr8_1	exon	10847257	10847362	10847257	ID=Msa1178180-mRNA-1:exon:3755;Parent=Msa1178180-mRNA-1
chr8_1	exon	10847854	10847939	10847854	ID=Msa1178180-mRNA-1:exon:3756;Parent=Msa1178180-mRNA-1
chr8_1	exon	10848081	10848269	10848081	ID=Msa1178180-mRNA-1:exon:3757;Parent=Msa1178180-mRNA-1
chr8_1	exon	10848966	10849118	10848966	ID=Msa1178180-mRNA-1:exon:3758;Parent=Msa1178180-mRNA-1
chr8_1	exon	10849219	10849332	10849219	ID=Msa1178180-mRNA-1:exon:3759;Parent=Msa1178180-mRNA-1
chr8_1	exon	10849612	10849923	10849612	ID=Msa1178180-mRNA-1:exon:3760;Parent=Msa1178180-mRNA-1
chr8_1	five_prime_UTR	10843995	10844271	10843995	ID=Msa1178180-mRNA-1:five_prime_utr;Parent=Msa1178180-mRNA-1
chr8_1	five_prime_UTR	10844988	10845089	10844988	ID=Msa1178180-mRNA-1:five_prime_utr;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10845090	10845171	10845090	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10845264	10845484	10845264	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10846204	10846339	10846204	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10847050	10847183	10847050	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10847257	10847362	10847257	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10847854	10847939	10847854	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10848081	10848269	10848081	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10848966	10849118	10848966	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10849219	10849332	10849219	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	CDS	10849612	10849866	10849612	ID=Msa1178180-mRNA-1:cds;Parent=Msa1178180-mRNA-1
chr8_1	three_prime_UTR	10849867	10849923	10849867	ID=Msa1178180-mRNA-1:three_prime_utr;Parent=Msa1178180-mRNA-1

Gene Sequence

>Msa1178180

ATGGGGATTCAGTGCTCGAGACTCATTCCATGTTGTGTGAATTCGCAAGTTAAGGCGTCGGTTCTGGAAACTCCAGATGCTGAAAATGATGATAGAAGTGAGGTTAGTAACTGGCCTACGTTCCGTGAGTTTACACTCGAGCAACTTAAGAATGCAACATCTGGTTTTGCTGTCGAGAATATTGTATCTGAGCATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAGCTGGAAAATCAAATGAGAATTGCTGTTAAACGGTTTAATAGAAATGCTTGGCCTGATACTCGGCAGTTTTTGGAGGAAGCAAAAGCAGTTGGCCAGCTTCGTAACCAAAGGTTGGCAAACTTGCTTGGTTGTTGTTGTGAAGGAGATGAGAGGTTGCTTGTGGCAGAATATATGCCAAATGAAACACTTGCAAAACACCTTTTCCATTGGGAATCACAACCTATGAAATGGGCGATGCGACTAAGGGTTGTTCTGCATCTTGCACAAGCTCTAGAGTACTGCACAGGCAAAGGGCGTGCTCTATATCACGATCTCAATGCATATAGAGTTCTCTTTGATGAGGATGGTAATCCTAGGCTTTCTACTTTTGGACTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAATATCTCCGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTACTTGACCTTCTCAGTGGAAAGCATATCCCCCCGAGTCATGCCCTCGATTTGATCCGGGACAGAAATCTTCAGATGTTGACAGATTCTTGTTTGGAAGGACAATTTTCTGACAATGACGGAACTGAGCTGGTACGCTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAAAGGCCTAATCCTAAATCATTGGTGGCTGCTTTGGCTCCTCTTCAGAAAGAAACCGAGGTTCCTTCACACGTATTGATGGGTATACCCCATAGCACCAGTTTTGCATCATTATCTCCACTCGGTGAAGCATGTTCAAGAAAGGACTTGACTGCTATACGCGAAGTTCTGGATAGTATTGGTTATAAAGATGATGAAGGAGTTACAAATGAGTTATCATTCCATATGTGGACTGATCAAATGCAGGACATATTAAATTGCAAGAAAAAGGGGGATGCTGCTTTCCGACAGAAAGAGTTTAGAGAAGCAATCGAGTGCTATACACAGTTCATCGATGCTGGAACAATGGTTTCTCCAACAGTCTATGCACGACGCAGTTTGTGTTATCTCATAAGCGACATGGCTAACGAAGGGCTAAATGACGCAATGCAAGCGCAAGTTATTTCACCAATATGGCACATTGCATCATATCTTCAATCTGTTGCACTTGCAACACTTGGTATGGAGAATGAAGCACAAGCAGCACTTAAAGAAAGCACAACACTCGAATCGAAGTGGAACGCGACTTCGAAACAAAAGTGA

Protein sequence

>Msa1178180

MGIQCSRLIPCCVNSQVKASVLETPDAENDDRSEVSNWPTFREFTLEQLKNATSGFAVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNRNAWPDTRQFLEEAKAVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWESQPMKWAMRLRVVLHLAQALEYCTGKGRALYHDLNAYRVLFDEDGNPRLSTFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDNDGTELVRLASRCLQYEPRERPNPKSLVAALAPLQKETEVPSHVLMGIPHSTSFASLSPLGEACSRKDLTAIREVLDSIGYKDDEGVTNELSFHMWTDQMQDILNCKKKGDAAFRQKEFREAIECYTQFIDAGTMVSPTVYARRSLCYLISDMANEGLNDAMQAQVISPIWHIASYLQSVALATLGMENEAQAALKESTTLESKWNATSKQK*