AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141620 MtrunA17_Chr7g0235761 83.582 134 21 1 1 133 1 134 3.66e-73 223
Msa0141620 MtrunA17_Chr2g0306391 40.000 65 39 0 68 132 123 187 5.05e-12 62.0
Msa0141620 MtrunA17_Chr4g0062811 38.462 65 40 0 68 132 121 185 1.47e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141620 AT3G25110.1 55.072 138 54 3 1 133 1 135 3.78e-37 130
Msa0141620 AT4G13050.1 50.000 144 51 4 1 133 1 134 1.38e-31 115
Msa0141620 AT1G08510.1 38.462 65 40 0 68 132 125 189 2.58e-11 60.5

Find 104 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAATGGTTCGAATTTA+AGG 0.122811 1_3:-76988568 None:intergenic
CTTAAAGAAAATTCCAAAAT+TGG 0.139050 1_3:+76993498 Msa0141620:three_prime_UTR
TGAGCAGGATCTCCCAATTT+TGG 0.174673 1_3:-76993511 None:intergenic
AGGGAATTAGGCAAGTAATT+AGG 0.197246 1_3:-76995186 None:intergenic
GTTAACAATGTCGCCTATAT+TGG 0.254819 1_3:+76993739 Msa0141620:three_prime_UTR
CAATTCTAGACTTGGTCTTA+TGG 0.261441 1_3:+76993534 Msa0141620:three_prime_UTR
ACCGGCCGGAGCTCAGTTAA+AGG 0.298683 1_3:+76988748 Msa0141620:CDS
AACCGTTGCTAATCTCTTGC+AGG 0.304990 1_3:+76988969 Msa0141620:CDS
CTACAAAGGCGTTCCGGTTC+AGG 0.311227 1_3:+76988780 Msa0141620:CDS
GGGAATTAGGCAAGTAATTA+GGG 0.315381 1_3:-76995185 None:intergenic
CATGTCTCAATGCGGGTTTA+TGG 0.316770 1_3:+76988705 Msa0141620:CDS
AAGTTGTTAAGGAGGGAATT+AGG 0.325171 1_3:-76995198 None:intergenic
ATAAAGAGAAGTTCATTGTT+AGG 0.329960 1_3:+76988908 Msa0141620:CDS
ATGTCTCAATGCGGGTTTAT+GGG 0.336816 1_3:+76988706 Msa0141620:CDS
CCCGTTCTACAAAGGCGTTC+CGG 0.339647 1_3:+76988774 Msa0141620:CDS
CATGAAAATATCATCTCATA+TGG 0.342270 1_3:+76990946 Msa0141620:CDS
AGGACGGTGCGGTGGTGAAC+CGG 0.354014 1_3:+76988818 Msa0141620:CDS
GAGAAGAATTTGAATGGAAA+TGG 0.356775 1_3:-76988581 None:intergenic
TGAACCGGGTGAACGGATAT+TGG 0.360699 1_3:+76988833 Msa0141620:CDS
GTGAACGGATATTGGGAGTT+TGG 0.368296 1_3:+76988841 Msa0141620:CDS
ATGAAGGACTTGAAATAAAC+CGG 0.377663 1_3:+76994955 Msa0141620:three_prime_UTR
ATGTCGAGATCGGATCTTCT+AGG 0.378784 1_3:-76993706 None:intergenic
GCATTCTCGTCTGTAATCTA+AGG 0.386254 1_3:-76994781 None:intergenic
TTAAAGAAAATTCCAAAATT+GGG 0.388373 1_3:+76993499 Msa0141620:three_prime_UTR
TTCCATGCAATGGGGTGGAC+CGG 0.405990 1_3:+76988674 Msa0141620:CDS
GAACCGGGTGAACGGATATT+GGG 0.421066 1_3:+76988834 Msa0141620:CDS
CCAGAACTCAAAAGTACAAA+TGG 0.424338 1_3:+76994867 Msa0141620:three_prime_UTR
CCGGAACGCCTTTGTAGAAC+GGG 0.434627 1_3:-76988774 None:intergenic
TTCTCCATTCTGTTCGCCCC+CGG 0.443197 1_3:-76994974 None:intergenic
TTGGCGAACCGGTTGCGGCT+TGG 0.447926 1_3:+76988860 Msa0141620:CDS
TACGCAACAAATGAAGTAAT+CGG 0.449812 1_3:+76991164 Msa0141620:three_prime_UTR
CTCAAGCACCCATCCAATAT+AGG 0.452585 1_3:-76993752 None:intergenic
TGTTGAAACTTCCATGCAAT+GGG 0.456338 1_3:+76988665 Msa0141620:CDS
ATATTGGGAGTTTGGCGAAC+CGG 0.457870 1_3:+76988849 Msa0141620:CDS
TGTAATCATGCTCAGATTGT+TGG 0.461753 1_3:+76990890 Msa0141620:CDS
AGGCGTTCCGGTTCAGGCTG+TGG 0.462399 1_3:+76988786 Msa0141620:CDS
GATAAGCTCCAAGCCGCAAC+CGG 0.471716 1_3:-76988868 None:intergenic
TCGAAAGAGAAGAATTTGAA+TGG 0.472143 1_3:-76988587 None:intergenic
GATAGGTTAAGTTGTTAAGG+AGG 0.473472 1_3:-76995206 None:intergenic
GCTGACGCCACAGCCTGAAC+CGG 0.482127 1_3:-76988793 None:intergenic
TGAATTGAATTAGATAGAGA+TGG 0.488630 1_3:-76988539 None:intergenic
TCAGGCTGTGGCGTCAGCTA+AGG 0.491478 1_3:+76988798 Msa0141620:CDS
ATAGGTTAAGTTGTTAAGGA+GGG 0.496260 1_3:-76995205 None:intergenic
CCTGCTCACAATTCTAGACT+TGG 0.496653 1_3:+76993526 Msa0141620:three_prime_UTR
TTCACCTCATGTCTCAATGC+GGG 0.499355 1_3:+76988698 Msa0141620:CDS
GGAGTTTGGCGAACCGGTTG+CGG 0.504279 1_3:+76988855 Msa0141620:CDS
CTACTTAGATTGTCTAATGA+AGG 0.504999 1_3:+76994939 Msa0141620:three_prime_UTR
GGACGGTGCGGTGGTGAACC+GGG 0.505565 1_3:+76988819 Msa0141620:CDS
ATGTTGAAACTTCCATGCAA+TGG 0.511109 1_3:+76988664 Msa0141620:CDS
ATTGTTAGGAGCTATGAAGT+TGG 0.512151 1_3:+76988922 Msa0141620:CDS
ACAATGTCGCCTATATTGGA+TGG 0.518087 1_3:+76993743 Msa0141620:three_prime_UTR
TCCATGCAATGGGGTGGACC+GGG 0.521004 1_3:+76988675 Msa0141620:CDS
GAATTGAATTAGATAGAGAT+GGG 0.522067 1_3:-76988538 None:intergenic
ATGGTGTCAAGCAGAAGGAC+GGG 0.523668 1_3:+76991112 Msa0141620:three_prime_UTR
AAGAACAAAACCAACCATGC+AGG 0.527681 1_3:-76991008 None:intergenic
GCTTGGAGCTTATCTGAGGA+TGG 0.528730 1_3:+76988877 Msa0141620:CDS
ACCGGAACGCCTTTGTAGAA+CGG 0.536102 1_3:-76988775 None:intergenic
AAGCAGAAGGACGGGGAACA+AGG 0.537425 1_3:+76991120 Msa0141620:three_prime_UTR
TCCTTTAACTGAGCTCCGGC+CGG 0.538553 1_3:-76988749 None:intergenic
TATTTATTGTTTCAGCAAGT+GGG 0.553709 1_3:+76992399 Msa0141620:intron
TAAGTAGATGAAGAAACTGT+TGG 0.555570 1_3:-76994923 None:intergenic
ACCCGGTCCACCCCATTGCA+TGG 0.556937 1_3:-76988676 None:intergenic
ATGCTGATTCATGTCGAGAT+CGG 0.559767 1_3:-76993716 None:intergenic
TTTACTGTCCTCGAGAGCTA+AGG 0.562749 1_3:+76992486 Msa0141620:three_prime_UTR
ATGAAAATATCATCTCATAT+GGG 0.566914 1_3:+76990947 Msa0141620:CDS
GCGGTGGTGAACCGGGTGAA+CGG 0.574700 1_3:+76988826 Msa0141620:CDS
CATGGTGTCAAGCAGAAGGA+CGG 0.581111 1_3:+76991111 Msa0141620:three_prime_UTR
AGAACAAAACCAACCATGCA+GGG 0.581789 1_3:-76991007 None:intergenic
AAATGGATCTAGTAAAGCAA+TGG 0.582303 1_3:+76994884 Msa0141620:three_prime_UTR
CTTTAGGTTGGCAATTCCTG+AGG 0.582880 1_3:+76993462 Msa0141620:intron
TAGCTATCAATGATTTCTTG+AGG 0.584652 1_3:-76994741 None:intergenic
AATATTGTAATAATTATGAG+TGG 0.587170 1_3:+76995106 Msa0141620:three_prime_UTR
GTCAGCTAAGGACGGTGCGG+TGG 0.588906 1_3:+76988810 Msa0141620:CDS
CCAAGTCTAGAATTGTGAGC+AGG 0.590441 1_3:-76993526 None:intergenic
CAATGTCGCCTATATTGGAT+GGG 0.590779 1_3:+76993744 Msa0141620:three_prime_UTR
AAGTCTACAAATACCCTGCA+TGG 0.597776 1_3:+76990994 Msa0141620:exon
CTATATTGGATGGGTGCTTG+AGG 0.600206 1_3:+76993753 Msa0141620:three_prime_UTR
TGCGGCTTGGAGCTTATCTG+AGG 0.602493 1_3:+76988873 Msa0141620:CDS
GAGACATGGTGTCAAGCAGA+AGG 0.605086 1_3:+76991107 Msa0141620:three_prime_UTR
TGAAGGACTTGAAATAAACC+GGG 0.608698 1_3:+76994956 Msa0141620:three_prime_UTR
AACCTGCAAGAGATTAGCAA+CGG 0.609951 1_3:-76988971 None:intergenic
GGTATCCTTTAACTGAGCTC+CGG 0.617207 1_3:-76988753 None:intergenic
ATTGAGACATGAGGTGAACC+CGG 0.617979 1_3:-76988693 None:intergenic
TGGTGTCAAGCAGAAGGACG+GGG 0.621653 1_3:+76991113 Msa0141620:three_prime_UTR
ACTCCCAATATCCGTTCACC+CGG 0.623368 1_3:-76988837 None:intergenic
AAAGGATACCCGTTCTACAA+AGG 0.625459 1_3:+76988766 Msa0141620:CDS
TGTTGAGAGAAGTTTACTCA+CGG 0.637081 1_3:-76995029 None:intergenic
AGTACCGACCTTAGCTCTCG+AGG 0.641152 1_3:-76992494 None:intergenic
AGTTGATTCACTAACAAGTG+TGG 0.644468 1_3:+76994818 Msa0141620:three_prime_UTR
GCTGTGGCGTCAGCTAAGGA+CGG 0.644742 1_3:+76988802 Msa0141620:CDS
GAAACTTCCATGCAATGGGG+TGG 0.660785 1_3:+76988669 Msa0141620:CDS
AGATGGGAAAGAAAGAAATG+TGG 0.672021 1_3:-76988522 None:intergenic
ACAAGTGTGGAAGCACGTGA+AGG 0.679433 1_3:+76994831 Msa0141620:three_prime_UTR
GTTCACCTCATGTCTCAATG+CGG 0.681231 1_3:+76988697 Msa0141620:CDS
AAGTAATCGGAAGAGCAACA+AGG 0.684096 1_3:+76991177 Msa0141620:three_prime_UTR
GAAGGACTTGAAATAAACCG+GGG 0.685296 1_3:+76994957 Msa0141620:three_prime_UTR
GGCGTCAGCTAAGGACGGTG+CGG 0.685500 1_3:+76988807 Msa0141620:CDS
TAATGATGAATGAGGACACG+AGG 0.687767 1_3:+76992422 Msa0141620:three_prime_UTR
CAAGTGGGTAATGATGAATG+AGG 0.688947 1_3:+76992414 Msa0141620:three_prime_UTR
ATGTGGCACGTGTTCAAGTG+TGG 0.692816 1_3:-76988505 None:intergenic
TAAACCCGCATTGAGACATG+AGG 0.694340 1_3:-76988702 None:intergenic
AAGGACTTGAAATAAACCGG+GGG 0.736513 1_3:+76994958 Msa0141620:three_prime_UTR
ATGTTGTTGAGATAGAGACA+TGG 0.775216 1_3:+76991093 Msa0141620:three_prime_UTR
GTTGAAACTTCCATGCAATG+GGG 0.786120 1_3:+76988666 Msa0141620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATAAATAAAAA+TGG + chr1_3:76991516-76991535 Msa0141620:intron 0.0%
!! ATATATATATAAATAAAAAT+GGG + chr1_3:76991517-76991536 Msa0141620:intron 0.0%
!!! TGTTATTTTTAAAATATTAC+CGG + chr1_3:76989249-76989268 Msa0141620:intron 10.0%
!! TTAAGATTAACAATTAAATT+AGG - chr1_3:76989883-76989902 None:intergenic 10.0%
!!! TTTTCTTTTTTTTTTTTTGA+AGG + chr1_3:76990094-76990113 Msa0141620:intron 10.0%
!!! TTTCTTTTTTTTTTTTTGAA+GGG + chr1_3:76990095-76990114 Msa0141620:intron 10.0%
!! AAATTTAAATAAACTAAGTA+CGG + chr1_3:76991404-76991423 Msa0141620:intron 10.0%
!!! AATACTTTTTTAATTGATTG+TGG + chr1_3:76989122-76989141 Msa0141620:intron 15.0%
!!! CATTTTATATTATAGTTTTG+AGG + chr1_3:76989625-76989644 Msa0141620:intron 15.0%
!! TAAGACATAGAATTAATTTA+AGG + chr1_3:76989817-76989836 Msa0141620:intron 15.0%
!! AAGACATAGAATTAATTTAA+GGG + chr1_3:76989818-76989837 Msa0141620:intron 15.0%
!! GAGTATTATTACATATATAT+TGG + chr1_3:76990181-76990200 Msa0141620:intron 15.0%
!! TATTACATATATATTGGATT+TGG + chr1_3:76990187-76990206 Msa0141620:intron 15.0%
!!! TACAAATTACCTTTTAAATT+AGG + chr1_3:76991200-76991219 Msa0141620:intron 15.0%
!! TTGATATTATTATACACTAT+AGG + chr1_3:76991265-76991284 Msa0141620:intron 15.0%
!! TGATATTATTATACACTATA+GGG + chr1_3:76991266-76991285 Msa0141620:intron 15.0%
!! AATTTAAATAAACTAAGTAC+GGG + chr1_3:76991405-76991424 Msa0141620:intron 15.0%
!! TAATAAAAAATGTACTGAAA+AGG + chr1_3:76991697-76991716 Msa0141620:intron 15.0%
!! AAAAAATAAAAACACAAACA+GGG + chr1_3:76991985-76992004 Msa0141620:intron 15.0%
!! TATATGTAAATATCAATTCA+AGG + chr1_3:76993395-76993414 Msa0141620:intron 15.0%
!! ATATGTAAATATCAATTCAA+GGG + chr1_3:76993396-76993415 Msa0141620:intron 15.0%
!! TTAAAGAAAATTCCAAAATT+GGG + chr1_3:76993499-76993518 Msa0141620:three_prime_UTR 15.0%
!!! TTAACTCAATATTTTTAACT+TGG + chr1_3:76993930-76993949 Msa0141620:intron 15.0%
!!! TAACTCAATATTTTTAACTT+GGG + chr1_3:76993931-76993950 Msa0141620:intron 15.0%
!!! TCAATATTTTAAAAACCAAT+CGG + chr1_3:76994336-76994355 Msa0141620:intron 15.0%
!! AATATTGTAATAATTATGAG+TGG + chr1_3:76995106-76995125 Msa0141620:three_prime_UTR 15.0%
!! AGTGTCATAATTTATATCTT+TGG + chr1_3:76989310-76989329 Msa0141620:intron 20.0%
!! ATTAATTCTATGTCTTAGTA+CGG - chr1_3:76989814-76989833 None:intergenic 20.0%
!! AAGAGATAGAAAAGAAAATA+AGG + chr1_3:76989984-76990003 Msa0141620:intron 20.0%
!!! GCATATTAAACATTGAATTT+TGG + chr1_3:76990409-76990428 Msa0141620:intron 20.0%
!! ACCTAAGAACAATTAATAAT+AGG - chr1_3:76990565-76990584 None:intergenic 20.0%
!!! ATCATTGTTGTTTTATCAAA+TGG + chr1_3:76990616-76990635 Msa0141620:intron 20.0%
!!! TCATTGTTGTTTTATCAAAT+GGG + chr1_3:76990617-76990636 Msa0141620:intron 20.0%
!! ATGAAAATATCATCTCATAT+GGG + chr1_3:76990947-76990966 Msa0141620:CDS 20.0%
!!! AATTACCTTTTAAATTAGGA+TGG + chr1_3:76991204-76991223 Msa0141620:intron 20.0%
!!! TGTGTTTTTATTTTTTGACT+GGG - chr1_3:76991981-76992000 None:intergenic 20.0%
!!! TTGTGTTTTTATTTTTTGAC+TGG - chr1_3:76991982-76992001 None:intergenic 20.0%
!! CAAAAAATAAAAACACAAAC+AGG + chr1_3:76991984-76992003 Msa0141620:intron 20.0%
!!! TTTTACAATAATCAGTATCT+TGG - chr1_3:76992131-76992150 None:intergenic 20.0%
!! AATTATTGTTAATCATACCA+TGG - chr1_3:76992262-76992281 None:intergenic 20.0%
!!! CATTACTTTTATTTAGAATC+AGG + chr1_3:76992778-76992797 Msa0141620:intron 20.0%
!! TTATATCATTATCCTATGAT+GGG - chr1_3:76992901-76992920 None:intergenic 20.0%
!! TTTATATCATTATCCTATGA+TGG - chr1_3:76992902-76992921 None:intergenic 20.0%
!! TTTATATTCATAATAACTCC+TGG - chr1_3:76992987-76993006 None:intergenic 20.0%
!!! CTTTTCTTTATTCTTTTATG+TGG + chr1_3:76993439-76993458 Msa0141620:intron 20.0%
!! CTTAAAGAAAATTCCAAAAT+TGG + chr1_3:76993498-76993517 Msa0141620:three_prime_UTR 20.0%
!!! ACTCAATATTTTTAACTTTG+AGG + chr1_3:76993957-76993976 Msa0141620:intron 20.0%
!! AAAAATATTTATACTGAGAG+TGG - chr1_3:76994173-76994192 None:intergenic 20.0%
!! TTAGTGAATGTTTAAATTAG+TGG + chr1_3:76994297-76994316 Msa0141620:intron 20.0%
!!! TTTAAATTAGTGGAACTTTT+GGG + chr1_3:76994307-76994326 Msa0141620:intron 20.0%
!!! CAATATTTTAAAAACCAATC+GGG + chr1_3:76994337-76994356 Msa0141620:intron 20.0%
! GAATTGAATTAGATAGAGAT+GGG - chr1_3:76988541-76988560 None:intergenic 25.0%
! TGAATTGAATTAGATAGAGA+TGG - chr1_3:76988542-76988561 None:intergenic 25.0%
! ATAAAGAGAAGTTCATTGTT+AGG + chr1_3:76988908-76988927 Msa0141620:CDS 25.0%
! TTGATCCAATTGTTAATGAT+TGG + chr1_3:76989051-76989070 Msa0141620:intron 25.0%
! TTGATCCAATTGTTAATGAT+AGG + chr1_3:76989051-76989070 Msa0141620:intron 25.0%
! ATATCTCTATTCTCTACTAA+CGG - chr1_3:76989518-76989537 None:intergenic 25.0%
! TTAATTCTATGTCTTAGTAC+GGG - chr1_3:76989813-76989832 None:intergenic 25.0%
!! AAAAGAAAATAAGGCTTGTT+GGG + chr1_3:76989993-76990012 Msa0141620:intron 25.0%
!!! ATTAATTTGCTCAAATGAGA+GGG - chr1_3:76990320-76990339 None:intergenic 25.0%
! GCCTATTATTAATTGTTCTT+AGG + chr1_3:76990561-76990580 Msa0141620:intron 25.0%
!! CATATGAGATGATATTTTCA+TGG - chr1_3:76990948-76990967 None:intergenic 25.0%
! CATGAAAATATCATCTCATA+TGG + chr1_3:76990946-76990965 Msa0141620:CDS 25.0%
! TAAATAAAAATGGGCAAAAC+AGG + chr1_3:76991526-76991545 Msa0141620:intron 25.0%
! ATAAAATACCAAAACAGAGT+GGG + chr1_3:76991554-76991573 Msa0141620:intron 25.0%
! GAACAAGTTTCTTTATTAGA+TGG - chr1_3:76991613-76991632 None:intergenic 25.0%
! AAGTCTTCATGAAATATTAG+TGG + chr1_3:76991765-76991784 Msa0141620:intron 25.0%
! AATAATTCAAAGCTTGTGAA+AGG - chr1_3:76991820-76991839 None:intergenic 25.0%
! TGATTATTGTAAAAGTCACA+AGG + chr1_3:76992137-76992156 Msa0141620:intron 25.0%
! TTTGTCCAAATTTAGATCTT+AGG - chr1_3:76992207-76992226 None:intergenic 25.0%
! AATATAGGTGGTTATCTTTA+TGG - chr1_3:76992383-76992402 None:intergenic 25.0%
! CTTGCTGAAACAATAAATAT+AGG - chr1_3:76992398-76992417 None:intergenic 25.0%
! ATATTTATTGTTTCAGCAAG+TGG + chr1_3:76992398-76992417 Msa0141620:intron 25.0%
! TATTTATTGTTTCAGCAAGT+GGG + chr1_3:76992399-76992418 Msa0141620:intron 25.0%
! AAATACGTTTGATAAAGCAT+AGG + chr1_3:76992605-76992624 Msa0141620:intron 25.0%
! TGATATACTTTATTAAGTCC+TGG - chr1_3:76992719-76992738 None:intergenic 25.0%
!!! TACTTTTATTTAGAATCAGG+CGG + chr1_3:76992781-76992800 Msa0141620:intron 25.0%
! AGGATAATGATATAAACTCT+AGG + chr1_3:76992906-76992925 Msa0141620:intron 25.0%
! CTTTATGATTTCAAAGATAC+AGG - chr1_3:76992962-76992981 None:intergenic 25.0%
! TTGAGAATCACATAAATTGT+TGG - chr1_3:76993011-76993030 None:intergenic 25.0%
!!! GTTTTGTTTGTTCGAAATAA+AGG + chr1_3:76993094-76993113 Msa0141620:intron 25.0%
!! TGTTCGAAATAAAGGTTTTT+CGG + chr1_3:76993102-76993121 Msa0141620:intron 25.0%
!! ATGCACATATTATTGATTGA+AGG + chr1_3:76993153-76993172 Msa0141620:intron 25.0%
!! TGCACATATTATTGATTGAA+GGG + chr1_3:76993154-76993173 Msa0141620:intron 25.0%
!! TATTGATTGAAGGGTAAAAT+TGG + chr1_3:76993163-76993182 Msa0141620:intron 25.0%
! GTATGTTTCATTGGAATTAT+AGG + chr1_3:76993282-76993301 Msa0141620:intron 25.0%
! TTTCATTGGAATTATAGGAA+TGG + chr1_3:76993287-76993306 Msa0141620:intron 25.0%
! TATAGGAATGGATGTATAAT+TGG + chr1_3:76993299-76993318 Msa0141620:intron 25.0%
! ATAGGAATGGATGTATAATT+GGG + chr1_3:76993300-76993319 Msa0141620:intron 25.0%
!! TTATTCTTTTATGTGGCTTT+AGG + chr1_3:76993446-76993465 Msa0141620:intron 25.0%
! CCTGATAAAATAATAGAGAA+AGG - chr1_3:76993592-76993611 None:intergenic 25.0%
!!! CCTTTCTCTATTATTTTATC+AGG + chr1_3:76993589-76993608 Msa0141620:intron 25.0%
! TATAAAACTAGATACAGCAT+GGG - chr1_3:76994053-76994072 None:intergenic 25.0%
! ATATAAAACTAGATACAGCA+TGG - chr1_3:76994054-76994073 None:intergenic 25.0%
!! GTTTAAATTAGTGGAACTTT+TGG + chr1_3:76994306-76994325 Msa0141620:intron 25.0%
! CAATGATTTAAAAATCCAAC+TGG - chr1_3:76994484-76994503 None:intergenic 25.0%
!! CAGTTGGATTTTTAAATCAT+TGG + chr1_3:76994482-76994501 Msa0141620:intron 25.0%
!!! TTTACTTTTTCCCTATGTTT+TGG + chr1_3:76994542-76994561 Msa0141620:intron 25.0%
! TTCATAATGCACAACTATAT+TGG + chr1_3:76994613-76994632 Msa0141620:intron 25.0%
ATGGAAATGGTTCGAATTTA+AGG - chr1_3:76988571-76988590 None:intergenic 30.0%
GAGAAGAATTTGAATGGAAA+TGG - chr1_3:76988584-76988603 None:intergenic 30.0%
TCGAAAGAGAAGAATTTGAA+TGG - chr1_3:76988590-76988609 None:intergenic 30.0%
ACTCACCAATCATTAACAAT+TGG - chr1_3:76989059-76989078 None:intergenic 30.0%
ACTCACCTATCATTAACAAT+TGG - chr1_3:76989093-76989112 None:intergenic 30.0%
!! TTGTGTGTGATTCTAAGATT+AGG + chr1_3:76989146-76989165 Msa0141620:intron 30.0%
!! TGTGTGTGATTCTAAGATTA+GGG + chr1_3:76989147-76989166 Msa0141620:intron 30.0%
ATAAATTATGACACTGACAC+CGG - chr1_3:76989305-76989324 None:intergenic 30.0%
AAAGAAACAAAGTTTCCACT+TGG - chr1_3:76989373-76989392 None:intergenic 30.0%
!!! CATGTTTTTTGAGACTATTC+TGG + chr1_3:76989418-76989437 Msa0141620:intron 30.0%
TTTATATACACTGACAGTGT+AGG + chr1_3:76989459-76989478 Msa0141620:intron 30.0%
TTATATACACTGACAGTGTA+GGG + chr1_3:76989460-76989479 Msa0141620:intron 30.0%
!! CTGTTTTCTGGCAATTTTAT+AGG + chr1_3:76989657-76989676 Msa0141620:intron 30.0%
! TTTATAGGTGCAGATTTTCT+TGG + chr1_3:76989672-76989691 Msa0141620:intron 30.0%
GAAAAGAAAATAAGGCTTGT+TGG + chr1_3:76989992-76990011 Msa0141620:intron 30.0%
TGAAAAATGGTATTAGAGGA+GGG - chr1_3:76990228-76990247 None:intergenic 30.0%
GAACTGAAAAATGGTATTAG+AGG - chr1_3:76990232-76990251 None:intergenic 30.0%
ATACAAATTGCCCTAATTTG+GGG - chr1_3:76990255-76990274 None:intergenic 30.0%
CATACAAATTGCCCTAATTT+GGG - chr1_3:76990256-76990275 None:intergenic 30.0%
TCATACAAATTGCCCTAATT+TGG - chr1_3:76990257-76990276 None:intergenic 30.0%
!! TGTTGAACTCTTTTAAAAGC+TGG + chr1_3:76990283-76990302 Msa0141620:intron 30.0%
!! CATTAATTTGCTCAAATGAG+AGG - chr1_3:76990321-76990340 None:intergenic 30.0%
TCTATAGCTCAATAAAGAAC+AGG - chr1_3:76990344-76990363 None:intergenic 30.0%
! ATAAAATTACGGACTACTTC+TGG + chr1_3:76990510-76990529 Msa0141620:intron 30.0%
TATGTTTACCCAATAAACAG+CGG - chr1_3:76990597-76990616 None:intergenic 30.0%
!!! TTCCACAATTTTAAGATGTC+TGG + chr1_3:76990841-76990860 Msa0141620:intron 30.0%
TACCAGACATCTTAAAATTG+TGG - chr1_3:76990846-76990865 None:intergenic 30.0%
! ATTGTTGGATTTTCAACTGA+TGG + chr1_3:76990905-76990924 Msa0141620:CDS 30.0%
TACGCAACAAATGAAGTAAT+CGG + chr1_3:76991164-76991183 Msa0141620:three_prime_UTR 30.0%
CATGACCATCCTAATTTAAA+AGG - chr1_3:76991212-76991231 None:intergenic 30.0%
! CTTTTAAATTAGGATGGTCA+TGG + chr1_3:76991210-76991229 Msa0141620:intron 30.0%
ATTACGATCATTGAACTCAA+AGG - chr1_3:76991315-76991334 None:intergenic 30.0%
GATAAAATACCAAAACAGAG+TGG + chr1_3:76991553-76991572 Msa0141620:intron 30.0%
TAAAATACCAAAACAGAGTG+GGG + chr1_3:76991555-76991574 Msa0141620:intron 30.0%
TACATTTGCACTTCAATAAC+AGG - chr1_3:76991638-76991657 None:intergenic 30.0%
! TTCACCAAAAAAAAGTGCAT+AGG + chr1_3:76991664-76991683 Msa0141620:intron 30.0%
! TCACCAAAAAAAAGTGCATA+GGG + chr1_3:76991665-76991684 Msa0141620:intron 30.0%
ATGAAGACTTGAAAAGTTGA+AGG - chr1_3:76991755-76991774 None:intergenic 30.0%
!! GTCTGAGTAATTGCTTTTAA+GGG - chr1_3:76991853-76991872 None:intergenic 30.0%
CTCTTTAGCAGCAAAAATAT+AGG + chr1_3:76992102-76992121 Msa0141620:intron 30.0%
GCTGAAACAATAAATATAGG+TGG - chr1_3:76992395-76992414 None:intergenic 30.0%
! AGCATAGGAGAAAATACTTT+TGG + chr1_3:76992620-76992639 Msa0141620:intron 30.0%
! GCATAGGAGAAAATACTTTT+GGG + chr1_3:76992621-76992640 Msa0141620:intron 30.0%
! CATAGGAGAAAATACTTTTG+GGG + chr1_3:76992622-76992641 Msa0141620:intron 30.0%
! ATAGGAGAAAATACTTTTGG+GGG + chr1_3:76992623-76992642 Msa0141620:intron 30.0%
TATCTTTATGAGTTCTTACC+AGG + chr1_3:76992698-76992717 Msa0141620:intron 30.0%
! CACCAAAAGTTTGTTCAAAA+TGG + chr1_3:76992753-76992772 Msa0141620:intron 30.0%
! CACCATTTTGAACAAACTTT+TGG - chr1_3:76992758-76992777 None:intergenic 30.0%
CAAGACAAATCATTTCAAGA+AGG - chr1_3:76992816-76992835 None:intergenic 30.0%
!!! TGTTTCACATGGCTATTTTT+AGG + chr1_3:76992934-76992953 Msa0141620:intron 30.0%
!! CTTTGAAATCATAAAGTTCC+AGG + chr1_3:76992966-76992985 Msa0141620:intron 30.0%
! GTTCGAAATAAAGGTTTTTC+GGG + chr1_3:76993103-76993122 Msa0141620:intron 30.0%
!!! AAATAAAGGTTTTTCGGGTA+AGG + chr1_3:76993108-76993127 Msa0141620:intron 30.0%
!!! AATAAAGGTTTTTCGGGTAA+GGG + chr1_3:76993109-76993128 Msa0141620:intron 30.0%
CTGAAAATGACTTTCAATCT+AGG + chr1_3:76993214-76993233 Msa0141620:intron 30.0%
TACAAATTCAGCACTCATTA+TGG + chr1_3:76993249-76993268 Msa0141620:intron 30.0%
ACAAATTCAGCACTCATTAT+GGG + chr1_3:76993250-76993269 Msa0141620:intron 30.0%
ACAGATGAAGTATGTTTCAT+TGG + chr1_3:76993273-76993292 Msa0141620:intron 30.0%
! AAGCAATTACTATTTTCCTC+AGG - chr1_3:76993481-76993500 None:intergenic 30.0%
TCCATTGACAGAAAAAAAGT+TGG + chr1_3:76993627-76993646 Msa0141620:intron 30.0%
TATTCACCATTTAATGAGTC+TGG + chr1_3:76993812-76993831 Msa0141620:intron 30.0%
! TTGTATGAAAGTATGTCCTA+TGG - chr1_3:76993857-76993876 None:intergenic 30.0%
! AGAGTATTTGTCTTACTCAT+AGG + chr1_3:76994134-76994153 Msa0141620:intron 30.0%
!! GTACTGATTCAAAGTTAAAC+CGG - chr1_3:76994372-76994391 None:intergenic 30.0%
CTTTGAATCAGTACTTTCTT+TGG + chr1_3:76994378-76994397 Msa0141620:intron 30.0%
!! TACTTTCTTTGGTTTGATTG+CGG + chr1_3:76994389-76994408 Msa0141620:intron 30.0%
ATCTAAGCATCCAAAACATA+GGG - chr1_3:76994555-76994574 None:intergenic 30.0%
! CTTTTAGATATGTTGTGTGT+TGG + chr1_3:76994671-76994690 Msa0141620:intron 30.0%
TAGCTATCAATGATTTCTTG+AGG - chr1_3:76994744-76994763 None:intergenic 30.0%
!!! AATCAACTATGTCGTTTTGT+TGG - chr1_3:76994806-76994825 None:intergenic 30.0%
AAATGGATCTAGTAAAGCAA+TGG + chr1_3:76994884-76994903 Msa0141620:three_prime_UTR 30.0%
TAAGTAGATGAAGAAACTGT+TGG - chr1_3:76994926-76994945 None:intergenic 30.0%
CTACTTAGATTGTCTAATGA+AGG + chr1_3:76994939-76994958 Msa0141620:three_prime_UTR 30.0%
ATGAAGGACTTGAAATAAAC+CGG + chr1_3:76994955-76994974 Msa0141620:three_prime_UTR 30.0%
AGATGGGAAAGAAAGAAATG+TGG - chr1_3:76988525-76988544 None:intergenic 35.0%
ATGTTGAAACTTCCATGCAA+TGG + chr1_3:76988664-76988683 Msa0141620:CDS 35.0%
TGTTGAAACTTCCATGCAAT+GGG + chr1_3:76988665-76988684 Msa0141620:CDS 35.0%
ATTGTTAGGAGCTATGAAGT+TGG + chr1_3:76988922-76988941 Msa0141620:CDS 35.0%
!! GTGTGTGATTCTAAGATTAG+GGG + chr1_3:76989148-76989167 Msa0141620:intron 35.0%
! GGTGTTTCTGATTATCTTCA+CGG + chr1_3:76989331-76989350 Msa0141620:intron 35.0%
TAAGAACTAACCACTGTGTA+TGG + chr1_3:76989540-76989559 Msa0141620:intron 35.0%
GATTCATTTCTATGCACTGA+CGG - chr1_3:76989604-76989623 None:intergenic 35.0%
!!! AGGTTTTGTTTGCTGTTTTC+TGG + chr1_3:76989645-76989664 Msa0141620:intron 35.0%
CTGAAAAATGGTATTAGAGG+AGG - chr1_3:76990229-76990248 None:intergenic 35.0%
AATTTGGGGGAACTGAAAAA+TGG - chr1_3:76990241-76990260 None:intergenic 35.0%
!! TTTTTCAGTTCCCCCAAATT+AGG + chr1_3:76990241-76990260 Msa0141620:intron 35.0%
! TTTTCAGTTCCCCCAAATTA+GGG + chr1_3:76990242-76990261 Msa0141620:intron 35.0%
TACAAATTGCCCTAATTTGG+GGG - chr1_3:76990254-76990273 None:intergenic 35.0%
CTATAGATTGCTGATATTGC+AGG + chr1_3:76990357-76990376 Msa0141620:intron 35.0%
CTAAACTTCTCAATCCAGAA+AGG - chr1_3:76990389-76990408 None:intergenic 35.0%
CTTTCTGGATTGAGAAGTTT+AGG + chr1_3:76990387-76990406 Msa0141620:intron 35.0%
TCTTGAATTCCGCTGTTTAT+TGG + chr1_3:76990585-76990604 Msa0141620:intron 35.0%
CTTGAATTCCGCTGTTTATT+GGG + chr1_3:76990586-76990605 Msa0141620:intron 35.0%
CAAATGGGAATGTCTTTAAG+AGG + chr1_3:76990632-76990651 Msa0141620:intron 35.0%
! TTCCTAAGTTGAGTTATGAC+TGG - chr1_3:76990677-76990696 None:intergenic 35.0%
! GTCATGTTCTAACGTGTTTT+TGG - chr1_3:76990754-76990773 None:intergenic 35.0%
!!! TCTGGTAACTTTTTTGTTGC+AGG + chr1_3:76990859-76990878 Msa0141620:intron 35.0%
TGTAATCATGCTCAGATTGT+TGG + chr1_3:76990890-76990909 Msa0141620:CDS 35.0%
CCTGTTGGAATCATTTAAGT+TGG - chr1_3:76991069-76991088 None:intergenic 35.0%
CCAACTTAAATGATTCCAAC+AGG + chr1_3:76991066-76991085 Msa0141620:intron 35.0%
ATGTTGTTGAGATAGAGACA+TGG + chr1_3:76991093-76991112 Msa0141620:three_prime_UTR 35.0%
ACGTATCATTACAAGTGTCA+GGG - chr1_3:76991384-76991403 None:intergenic 35.0%
TACGTATCATTACAAGTGTC+AGG - chr1_3:76991385-76991404 None:intergenic 35.0%
ATAAAAATGGGCAAAACAGG+CGG + chr1_3:76991529-76991548 Msa0141620:intron 35.0%
AACACTTCAATGCAAAACAG+AGG + chr1_3:76991582-76991601 Msa0141620:intron 35.0%
!!! AGTCCCTATGCACTTTTTTT+TGG - chr1_3:76991671-76991690 None:intergenic 35.0%
!! CGTCTGAGTAATTGCTTTTA+AGG - chr1_3:76991854-76991873 None:intergenic 35.0%
AAAAGCAATTACTCAGACGA+TGG + chr1_3:76991855-76991874 Msa0141620:intron 35.0%
!! TTTTTGCTGCTAAAGAGCAT+AGG - chr1_3:76992099-76992118 None:intergenic 35.0%
GCTGTCCTAAGATCTAAATT+TGG + chr1_3:76992199-76992218 Msa0141620:intron 35.0%
GCATCAATTTACATGATGTG+AGG - chr1_3:76992286-76992305 None:intergenic 35.0%
!! TTTTATTTAGAATCAGGCGG+AGG + chr1_3:76992784-76992803 Msa0141620:intron 35.0%
ACCTAGTCAATAGCAACTAA+TGG - chr1_3:76992853-76992872 None:intergenic 35.0%
! GCTATTGACTAGGTAATATC+TGG + chr1_3:76992859-76992878 Msa0141620:intron 35.0%
TGAATCAAGTTTCTCTAGCT+TGG + chr1_3:76993056-76993075 Msa0141620:intron 35.0%
!!! ATAAAGGTTTTTCGGGTAAG+GGG + chr1_3:76993110-76993129 Msa0141620:intron 35.0%
GGATGTATAATTGGGAAGTT+TGG + chr1_3:76993308-76993327 Msa0141620:intron 35.0%
!!! TCTTTTATGTGGCTTTAGGT+TGG + chr1_3:76993450-76993469 Msa0141620:intron 35.0%
!! CAATTCTAGACTTGGTCTTA+TGG + chr1_3:76993534-76993553 Msa0141620:three_prime_UTR 35.0%
! GGTCTTATGGTATGATCATT+TGG + chr1_3:76993547-76993566 Msa0141620:intron 35.0%
!!! GCCAACTTTTTTTCTGTCAA+TGG - chr1_3:76993631-76993650 None:intergenic 35.0%
ATCTTCTAGGCTGCAATATT+GGG - chr1_3:76993696-76993715 None:intergenic 35.0%
GTTAACAATGTCGCCTATAT+TGG + chr1_3:76993739-76993758 Msa0141620:three_prime_UTR 35.0%
AGAGTTCCAGACTCATTAAA+TGG - chr1_3:76993821-76993840 None:intergenic 35.0%
! ATTTAATGAGTCTGGAACTC+TGG + chr1_3:76993820-76993839 Msa0141620:intron 35.0%
GGAACATGATATGCAAAAGT+TGG - chr1_3:76993882-76993901 None:intergenic 35.0%
AACACATACATACACACAGA+AGG - chr1_3:76994095-76994114 None:intergenic 35.0%
TGTGTGTATGTATGTGTTGA+TGG + chr1_3:76994097-76994116 Msa0141620:intron 35.0%
! GTGTTGATGGATACCTATAT+CGG + chr1_3:76994110-76994129 Msa0141620:intron 35.0%
GACAAATACTCTTCCGATAT+AGG - chr1_3:76994126-76994145 None:intergenic 35.0%
TTTGTCTTACTCATAGGACT+TGG + chr1_3:76994140-76994159 Msa0141620:intron 35.0%
ATAGTCAACTCTTAGAAGTG+AGG - chr1_3:76994222-76994241 None:intergenic 35.0%
!! ATTTTAAAAACCAATCGGGC+TGG + chr1_3:76994341-76994360 Msa0141620:intron 35.0%
CATCTAAGCATCCAAAACAT+AGG - chr1_3:76994556-76994575 None:intergenic 35.0%
! AGTTGATTCACTAACAAGTG+TGG + chr1_3:76994818-76994837 Msa0141620:three_prime_UTR 35.0%
!!! CCATTTGTACTTTTGAGTTC+TGG - chr1_3:76994870-76994889 None:intergenic 35.0%
! CCAGAACTCAAAAGTACAAA+TGG + chr1_3:76994867-76994886 Msa0141620:three_prime_UTR 35.0%
TGAAGGACTTGAAATAAACC+GGG + chr1_3:76994956-76994975 Msa0141620:three_prime_UTR 35.0%
AACAGAATGGAGAAAAAAGG+CGG + chr1_3:76994983-76995002 Msa0141620:three_prime_UTR 35.0%
TGTTGAGAGAAGTTTACTCA+CGG - chr1_3:76995032-76995051 None:intergenic 35.0%
GGGAATTAGGCAAGTAATTA+GGG - chr1_3:76995188-76995207 None:intergenic 35.0%
AGGGAATTAGGCAAGTAATT+AGG - chr1_3:76995189-76995208 None:intergenic 35.0%
GTTGAAACTTCCATGCAATG+GGG + chr1_3:76988666-76988685 Msa0141620:CDS 40.0%
ATGTCTCAATGCGGGTTTAT+GGG + chr1_3:76988706-76988725 Msa0141620:CDS 40.0%
AAAGGATACCCGTTCTACAA+AGG + chr1_3:76988766-76988785 Msa0141620:CDS 40.0%
AACCTGCAAGAGATTAGCAA+CGG - chr1_3:76988974-76988993 None:intergenic 40.0%
! TGTTTTGTGTGACAATGGCA+AGG + chr1_3:76989199-76989218 Msa0141620:intron 40.0%
! GATATTGTTGAAGTGCCAAG+TGG + chr1_3:76989355-76989374 Msa0141620:intron 40.0%
!! AATAAGGCTTGTTGGGAGTT+TGG + chr1_3:76990000-76990019 Msa0141620:intron 40.0%
! TGGTATTAGAGGAGGGTTTT+GGG - chr1_3:76990221-76990240 None:intergenic 40.0%
! ATGGTATTAGAGGAGGGTTT+TGG - chr1_3:76990222-76990241 None:intergenic 40.0%
TTCTGGTGATCACTATTTGC+TGG + chr1_3:76990527-76990546 Msa0141620:intron 40.0%
AGCCAGTCATAACTCAACTT+AGG + chr1_3:76990672-76990691 Msa0141620:intron 40.0%
!!! GGTAACTTTTTTGTTGCAGG+AGG + chr1_3:76990862-76990881 Msa0141620:intron 40.0%
!!! ACTTTTTTGTTGCAGGAGGT+TGG + chr1_3:76990866-76990885 Msa0141620:intron 40.0%
AAGTCTACAAATACCCTGCA+TGG + chr1_3:76990994-76991013 Msa0141620:exon 40.0%
AGAACAAAACCAACCATGCA+GGG - chr1_3:76991010-76991029 None:intergenic 40.0%
AAGAACAAAACCAACCATGC+AGG - chr1_3:76991011-76991030 None:intergenic 40.0%
AAGTAATCGGAAGAGCAACA+AGG + chr1_3:76991177-76991196 Msa0141620:three_prime_UTR 40.0%
!! GGTGCTGAGTTTTTCTGATA+TGG + chr1_3:76991287-76991306 Msa0141620:intron 40.0%
ATCATTACAAGTGTCAGGGT+CGG - chr1_3:76991380-76991399 None:intergenic 40.0%
TGGACTTAATGGTCGAATTG+CGG - chr1_3:76991905-76991924 None:intergenic 40.0%
!! TCTTAATACCTCTGAAGCAC+GGG - chr1_3:76992070-76992089 None:intergenic 40.0%
!! GTCTTAATACCTCTGAAGCA+CGG - chr1_3:76992071-76992090 None:intergenic 40.0%
CAAGTGGGTAATGATGAATG+AGG + chr1_3:76992414-76992433 Msa0141620:three_prime_UTR 40.0%
TAATGATGAATGAGGACACG+AGG + chr1_3:76992422-76992441 Msa0141620:three_prime_UTR 40.0%
TGTTGAGTCCACTAATGCAA+AGG + chr1_3:76992650-76992669 Msa0141620:intron 40.0%
GTTGAGTCCACTAATGCAAA+GGG + chr1_3:76992651-76992670 Msa0141620:intron 40.0%
TTGAGTCCACTAATGCAAAG+GGG + chr1_3:76992652-76992671 Msa0141620:intron 40.0%
! GCCATTAGTTGCTATTGACT+AGG + chr1_3:76992849-76992868 Msa0141620:intron 40.0%
AATATCTGGCATCACTCATG+AGG + chr1_3:76992873-76992892 Msa0141620:intron 40.0%
! TCTAGGACACATGTTTCACA+TGG + chr1_3:76992923-76992942 Msa0141620:intron 40.0%
! TTCTCTAGCTTGGCAATTGA+AGG + chr1_3:76993066-76993085 Msa0141620:intron 40.0%
GGCGAAACGCTAAAATATGT+TGG - chr1_3:76993658-76993677 None:intergenic 40.0%
TCTTCTAGGCTGCAATATTG+GGG - chr1_3:76993695-76993714 None:intergenic 40.0%
GATCTTCTAGGCTGCAATAT+TGG - chr1_3:76993697-76993716 None:intergenic 40.0%
!! ATGCTGATTCATGTCGAGAT+CGG - chr1_3:76993719-76993738 None:intergenic 40.0%
ACAATGTCGCCTATATTGGA+TGG + chr1_3:76993743-76993762 Msa0141620:three_prime_UTR 40.0%
CAATGTCGCCTATATTGGAT+GGG + chr1_3:76993744-76993763 Msa0141620:three_prime_UTR 40.0%
! GAAAGTATGTCCTATGGTGT+TGG - chr1_3:76993851-76993870 None:intergenic 40.0%
CATACATACACACAGAAGGT+AGG - chr1_3:76994091-76994110 None:intergenic 40.0%
!! CTTTAAAACCCCACTCAAAC+CGG - chr1_3:76994422-76994441 None:intergenic 40.0%
AAAGCAGTTGATCCATGATC+TGG + chr1_3:76994438-76994457 Msa0141620:intron 40.0%
! AGATATGTTGTGTGTTGGTG+TGG + chr1_3:76994676-76994695 Msa0141620:intron 40.0%
GCATTCTCGTCTGTAATCTA+AGG - chr1_3:76994784-76994803 None:intergenic 40.0%
GAAGGACTTGAAATAAACCG+GGG + chr1_3:76994957-76994976 Msa0141620:three_prime_UTR 40.0%
AAGGACTTGAAATAAACCGG+GGG + chr1_3:76994958-76994977 Msa0141620:three_prime_UTR 40.0%
GCGAACAGAATGGAGAAAAA+AGG + chr1_3:76994980-76994999 Msa0141620:three_prime_UTR 40.0%
AGAAAAAAGGCGGTGAGATA+AGG + chr1_3:76994993-76995012 Msa0141620:three_prime_UTR 40.0%
AAGCGACAGCTAGAAAAAAC+AGG - chr1_3:76995163-76995182 None:intergenic 40.0%
ATTGAGACATGAGGTGAACC+CGG - chr1_3:76988696-76988715 None:intergenic 45.0%
GTTCACCTCATGTCTCAATG+CGG + chr1_3:76988697-76988716 Msa0141620:CDS 45.0%
TTCACCTCATGTCTCAATGC+GGG + chr1_3:76988698-76988717 Msa0141620:CDS 45.0%
TAAACCCGCATTGAGACATG+AGG - chr1_3:76988705-76988724 None:intergenic 45.0%
CATGTCTCAATGCGGGTTTA+TGG + chr1_3:76988705-76988724 Msa0141620:CDS 45.0%
!!! CGACCCACTTCCTTTTTTAC+CGG + chr1_3:76988730-76988749 Msa0141620:CDS 45.0%
GGTATCCTTTAACTGAGCTC+CGG - chr1_3:76988756-76988775 None:intergenic 45.0%
GTGAACGGATATTGGGAGTT+TGG + chr1_3:76988841-76988860 Msa0141620:CDS 45.0%
ATATTGGGAGTTTGGCGAAC+CGG + chr1_3:76988849-76988868 Msa0141620:CDS 45.0%
AACCGTTGCTAATCTCTTGC+AGG + chr1_3:76988969-76988988 Msa0141620:CDS 45.0%
!! GACGCTGTTTTGTGTGACAA+TGG + chr1_3:76989194-76989213 Msa0141620:intron 45.0%
TCAAGTCACACCATACACAG+TGG - chr1_3:76989553-76989572 None:intergenic 45.0%
! TTGGCACTGAGATTCATGCA+TGG + chr1_3:76989691-76989710 Msa0141620:intron 45.0%
TATGCTAACTAGTGCCCCTA+GGG + chr1_3:76989841-76989860 Msa0141620:intron 45.0%
!! AATGCTAAAGAGTGCCCTAG+GGG - chr1_3:76989858-76989877 None:intergenic 45.0%
!! GAATGCTAAAGAGTGCCCTA+GGG - chr1_3:76989859-76989878 None:intergenic 45.0%
!! AGAATGCTAAAGAGTGCCCT+AGG - chr1_3:76989860-76989879 None:intergenic 45.0%
TTTGGAGGGCTGAGATTAGA+GGG + chr1_3:76990037-76990056 Msa0141620:intron 45.0%
ATTGCAGGTCTACTCCTTTC+TGG + chr1_3:76990372-76990391 Msa0141620:intron 45.0%
CTACAAATACCCTGCATGGT+TGG + chr1_3:76990998-76991017 Msa0141620:intron 45.0%
CTCAACAACATCACTCCTGT+TGG - chr1_3:76991084-76991103 None:intergenic 45.0%
! GTTTCATCCCCACTCTGTTT+TGG - chr1_3:76991565-76991584 None:intergenic 45.0%
TTTGACTGGGTACAAGCCAA+CGG - chr1_3:76991968-76991987 None:intergenic 45.0%
! GTTGGTTGAAGTACCAGTAC+CGG - chr1_3:76992039-76992058 None:intergenic 45.0%
TCATACCATGGAACTCGCTT+TGG - chr1_3:76992250-76992269 None:intergenic 45.0%
! CGACATCGTCAGACACTTTT+TGG - chr1_3:76992453-76992472 None:intergenic 45.0%
TTTACTGTCCTCGAGAGCTA+AGG + chr1_3:76992486-76992505 Msa0141620:three_prime_UTR 45.0%
TGCAACGCACTGTCAACAAA+GGG - chr1_3:76992528-76992547 None:intergenic 45.0%
TTGCAACGCACTGTCAACAA+AGG - chr1_3:76992529-76992548 None:intergenic 45.0%
TGAGTCCACTAATGCAAAGG+GGG + chr1_3:76992653-76992672 Msa0141620:intron 45.0%
TTTGTCTTGAGCTGCAGTTC+AGG + chr1_3:76992827-76992846 Msa0141620:intron 45.0%
! AAGGGGTGTAGGTTGACTTA+AGG + chr1_3:76993127-76993146 Msa0141620:intron 45.0%
! AGGGGTGTAGGTTGACTTAA+GGG + chr1_3:76993128-76993147 Msa0141620:intron 45.0%
!! CTTTAGGTTGGCAATTCCTG+AGG + chr1_3:76993462-76993481 Msa0141620:intron 45.0%
! TGAGCAGGATCTCCCAATTT+TGG - chr1_3:76993514-76993533 None:intergenic 45.0%
! CCAAGTCTAGAATTGTGAGC+AGG - chr1_3:76993529-76993548 None:intergenic 45.0%
CCTGCTCACAATTCTAGACT+TGG + chr1_3:76993526-76993545 Msa0141620:three_prime_UTR 45.0%
ATTGGGGGGAAAATGTGAGA+AGG - chr1_3:76993679-76993698 None:intergenic 45.0%
TTCTAGGCTGCAATATTGGG+GGG - chr1_3:76993693-76993712 None:intergenic 45.0%
CTTCTAGGCTGCAATATTGG+GGG - chr1_3:76993694-76993713 None:intergenic 45.0%
ATGTCGAGATCGGATCTTCT+AGG - chr1_3:76993709-76993728 None:intergenic 45.0%
CTCAAGCACCCATCCAATAT+AGG - chr1_3:76993755-76993774 None:intergenic 45.0%
CTATATTGGATGGGTGCTTG+AGG + chr1_3:76993753-76993772 Msa0141620:three_prime_UTR 45.0%
TCTGGATCTACCAACACCAT+AGG + chr1_3:76993838-76993857 Msa0141620:intron 45.0%
TCTTGACTGCGTGTCTATCT+TGG + chr1_3:76994014-76994033 Msa0141620:intron 45.0%
GTCAACTCTTAGAAGTGAGG+CGG - chr1_3:76994219-76994238 None:intergenic 45.0%
GTTTGATTGCGGTTTCGTTC+CGG + chr1_3:76994400-76994419 Msa0141620:intron 45.0%
TCACTTGTTCGATGTCCAGT+TGG + chr1_3:76994466-76994485 Msa0141620:intron 45.0%
!! ATTAATTAATTAATATAAAC+AGG - chr1_3:76989917-76989936 None:intergenic 5.0%
!! ATAAAATAAAATATAGTTAA+TGG + chr1_3:76989940-76989959 Msa0141620:intron 5.0%
!! TCTAAAAAAAAATAAAATTA+CGG + chr1_3:76990499-76990518 Msa0141620:intron 5.0%
!! AATTATGAAATTAAATTAAA+TGG - chr1_3:76993903-76993922 None:intergenic 5.0%
ATGTGGCACGTGTTCAAGTG+TGG - chr1_3:76988508-76988527 None:intergenic 50.0%
GAAACTTCCATGCAATGGGG+TGG + chr1_3:76988669-76988688 Msa0141620:CDS 50.0%
CGGCCGGTAAAAAAGGAAGT+GGG - chr1_3:76988736-76988755 None:intergenic 50.0%
!!! CCACTTCCTTTTTTACCGGC+CGG + chr1_3:76988734-76988753 Msa0141620:CDS 50.0%
ACCGGAACGCCTTTGTAGAA+CGG - chr1_3:76988778-76988797 None:intergenic 50.0%
TGAACCGGGTGAACGGATAT+TGG + chr1_3:76988833-76988852 Msa0141620:CDS 50.0%
GAACCGGGTGAACGGATATT+GGG + chr1_3:76988834-76988853 Msa0141620:CDS 50.0%
ACTCCCAATATCCGTTCACC+CGG - chr1_3:76988840-76988859 None:intergenic 50.0%
GCTTGGAGCTTATCTGAGGA+TGG + chr1_3:76988877-76988896 Msa0141620:CDS 50.0%
! ATTACCGGTGTCAGACTCAG+AGG + chr1_3:76989264-76989283 Msa0141620:intron 50.0%
CTGAGATTCATGCATGGTCG+AGG + chr1_3:76989697-76989716 Msa0141620:intron 50.0%
GTATGCTAACTAGTGCCCCT+AGG + chr1_3:76989840-76989859 Msa0141620:intron 50.0%
!! AAGGCTTGTTGGGAGTTTGG+AGG + chr1_3:76990003-76990022 Msa0141620:intron 50.0%
!! AGGCTTGTTGGGAGTTTGGA+GGG + chr1_3:76990004-76990023 Msa0141620:intron 50.0%
TGTTGGGAGTTTGGAGGGTA+AGG + chr1_3:76990009-76990028 Msa0141620:intron 50.0%
GTTGGGAGTTTGGAGGGTAA+GGG + chr1_3:76990010-76990029 Msa0141620:intron 50.0%
! CTTTGGAGGGCTGAGATTAG+AGG + chr1_3:76990036-76990055 Msa0141620:intron 50.0%
ATCTGTCTAAGTACGCAGCG+TGG + chr1_3:76990704-76990723 Msa0141620:intron 50.0%
! GAGACATGGTGTCAAGCAGA+AGG + chr1_3:76991107-76991126 Msa0141620:three_prime_UTR 50.0%
! CATGGTGTCAAGCAGAAGGA+CGG + chr1_3:76991111-76991130 Msa0141620:three_prime_UTR 50.0%
! ATGGTGTCAAGCAGAAGGAC+GGG + chr1_3:76991112-76991131 Msa0141620:three_prime_UTR 50.0%
! GGGTGATGACGTGGACTTAA+TGG - chr1_3:76991916-76991935 None:intergenic 50.0%
! TGTACAGATGGGTGATGACG+TGG - chr1_3:76991925-76991944 None:intergenic 50.0%
GATGCGGCACATGTACAGAT+GGG - chr1_3:76991936-76991955 None:intergenic 50.0%
TGATGCGGCACATGTACAGA+TGG - chr1_3:76991937-76991956 None:intergenic 50.0%
CCAACGGATACGGTATGATG+CGG - chr1_3:76991952-76991971 None:intergenic 50.0%
TGGGTACAAGCCAACGGATA+CGG - chr1_3:76991962-76991981 None:intergenic 50.0%
GTACAGCACGGGTAAGTATC+AGG - chr1_3:76992017-76992036 None:intergenic 50.0%
GATACTTACCCGTGCTGTAC+CGG + chr1_3:76992017-76992036 Msa0141620:intron 50.0%
TCTTGCCAAAGCGAGTTCCA+TGG + chr1_3:76992242-76992261 Msa0141620:intron 50.0%
TGTAGCCCCCTTTGCATTAG+TGG - chr1_3:76992661-76992680 None:intergenic 50.0%
! ACTCATGAGGCACCCATCAT+AGG + chr1_3:76992886-76992905 Msa0141620:intron 50.0%
!!! GTTTTTCGGGTAAGGGGTGT+AGG + chr1_3:76993116-76993135 Msa0141620:intron 50.0%
! GGTTTCGTTCCGGTTTGAGT+GGG + chr1_3:76994410-76994429 Msa0141620:intron 50.0%
! GTTTCGTTCCGGTTTGAGTG+GGG + chr1_3:76994411-76994430 Msa0141620:intron 50.0%
GCAGTTGATCCATGATCTGG+AGG + chr1_3:76994441-76994460 Msa0141620:intron 50.0%
CAAGTGAGACCTCCAGATCA+TGG - chr1_3:76994453-76994472 None:intergenic 50.0%
! ACAAGTGTGGAAGCACGTGA+AGG + chr1_3:76994831-76994850 Msa0141620:three_prime_UTR 50.0%
TTCCATGCAATGGGGTGGAC+CGG + chr1_3:76988674-76988693 Msa0141620:CDS 55.0%
CCGGCCGGTAAAAAAGGAAG+TGG - chr1_3:76988737-76988756 None:intergenic 55.0%
TGAGCTCCGGCCGGTAAAAA+AGG - chr1_3:76988743-76988762 None:intergenic 55.0%
TCCTTTAACTGAGCTCCGGC+CGG - chr1_3:76988752-76988771 None:intergenic 55.0%
CCGGAACGCCTTTGTAGAAC+GGG - chr1_3:76988777-76988796 None:intergenic 55.0%
!! CCCGTTCTACAAAGGCGTTC+CGG + chr1_3:76988774-76988793 Msa0141620:CDS 55.0%
!! CTACAAAGGCGTTCCGGTTC+AGG + chr1_3:76988780-76988799 Msa0141620:CDS 55.0%
GATAAGCTCCAAGCCGCAAC+CGG - chr1_3:76988871-76988890 None:intergenic 55.0%
! TGCGGCTTGGAGCTTATCTG+AGG + chr1_3:76988873-76988892 Msa0141620:CDS 55.0%
ACCACCTCTGAGTCTGACAC+CGG - chr1_3:76989271-76989290 None:intergenic 55.0%
GAGGTGGTCAGTGTTGTGTC+CGG + chr1_3:76989283-76989302 Msa0141620:intron 55.0%
CGGGTCTGTTCGCTGAATTG+AGG - chr1_3:76989794-76989813 None:intergenic 55.0%
TTGGAGGGTAAGGGAGGCTT+TGG + chr1_3:76990019-76990038 Msa0141620:intron 55.0%
!! AGGGTAAGGGAGGCTTTGGA+GGG + chr1_3:76990023-76990042 Msa0141620:intron 55.0%
! TGGTGTCAAGCAGAAGGACG+GGG + chr1_3:76991113-76991132 Msa0141620:three_prime_UTR 55.0%
AAGCAGAAGGACGGGGAACA+AGG + chr1_3:76991120-76991139 Msa0141620:three_prime_UTR 55.0%
AAGTGTCAGGGTCGGACACT+TGG - chr1_3:76991372-76991391 None:intergenic 55.0%
GAATTGCGGTGAGAACGTGC+AGG - chr1_3:76991891-76991910 None:intergenic 55.0%
CCGCATCATACCGTATCCGT+TGG + chr1_3:76991949-76991968 Msa0141620:intron 55.0%
!! TACCAGTACCGGTACAGCAC+GGG - chr1_3:76992028-76992047 None:intergenic 55.0%
!! GTACCAGTACCGGTACAGCA+CGG - chr1_3:76992029-76992048 None:intergenic 55.0%
CTGTCCTCGAGAGCTAAGGT+CGG + chr1_3:76992490-76992509 Msa0141620:intron 55.0%
!! AGTACCGACCTTAGCTCTCG+AGG - chr1_3:76992497-76992516 None:intergenic 55.0%
!! ACCAATCGGGCTGGTTTAGC+CGG + chr1_3:76994350-76994369 Msa0141620:intron 55.0%
! CGGTTTCGTTCCGGTTTGAG+TGG + chr1_3:76994409-76994428 Msa0141620:intron 55.0%
TAAACCGGGGGCGAACAGAA+TGG + chr1_3:76994970-76994989 Msa0141620:three_prime_UTR 55.0%
TTCTCCATTCTGTTCGCCCC+CGG - chr1_3:76994977-76994996 None:intergenic 55.0%
TCCATGCAATGGGGTGGACC+GGG + chr1_3:76988675-76988694 Msa0141620:CDS 60.0%
ACCGGCCGGAGCTCAGTTAA+AGG + chr1_3:76988748-76988767 Msa0141620:CDS 60.0%
TCAGGCTGTGGCGTCAGCTA+AGG + chr1_3:76988798-76988817 Msa0141620:CDS 60.0%
GCTGTGGCGTCAGCTAAGGA+CGG + chr1_3:76988802-76988821 Msa0141620:CDS 60.0%
GGAGTTTGGCGAACCGGTTG+CGG + chr1_3:76988855-76988874 Msa0141620:CDS 60.0%
! ACCGGTGTCAGACTCAGAGG+TGG + chr1_3:76989267-76989286 Msa0141620:intron 60.0%
GGGAGTTTGGAGGGTAAGGG+AGG + chr1_3:76990013-76990032 Msa0141620:intron 60.0%
! GAGGGTAAGGGAGGCTTTGG+AGG + chr1_3:76990022-76990041 Msa0141620:intron 60.0%
TTGCGGTGAGAACGTGCAGG+TGG - chr1_3:76991888-76991907 None:intergenic 60.0%
! TACCCGTGCTGTACCGGTAC+TGG + chr1_3:76992023-76992042 Msa0141620:intron 60.0%
GAAGCACGGGTACGCTGAGT+TGG - chr1_3:76992057-76992076 None:intergenic 60.0%
TCAGCGTACCCGTGCTTCAG+AGG + chr1_3:76992059-76992078 Msa0141620:intron 60.0%
ACCGGCTAAACCAGCCCGAT+TGG - chr1_3:76994354-76994373 None:intergenic 60.0%
ACCCGGTCCACCCCATTGCA+TGG - chr1_3:76988679-76988698 None:intergenic 65.0%
AGGCGTTCCGGTTCAGGCTG+TGG + chr1_3:76988786-76988805 Msa0141620:CDS 65.0%
GCTGACGCCACAGCCTGAAC+CGG - chr1_3:76988796-76988815 None:intergenic 65.0%
GGCGTCAGCTAAGGACGGTG+CGG + chr1_3:76988807-76988826 Msa0141620:CDS 65.0%
GTCAGCTAAGGACGGTGCGG+TGG + chr1_3:76988810-76988829 Msa0141620:CDS 65.0%
AGGACGGTGCGGTGGTGAAC+CGG + chr1_3:76988818-76988837 Msa0141620:CDS 65.0%
GCGGTGGTGAACCGGGTGAA+CGG + chr1_3:76988826-76988845 Msa0141620:CDS 65.0%
TTGGCGAACCGGTTGCGGCT+TGG + chr1_3:76988860-76988879 Msa0141620:CDS 65.0%
GGACGGTGCGGTGGTGAACC+GGG + chr1_3:76988819-76988838 Msa0141620:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 76988481 76995214 76988481 ID=Msa0141620;Name=Msa0141620
chr1_3 mRNA 76988481 76995214 76988481 ID=Msa0141620-mRNA-1;Parent=Msa0141620;Name=Msa0141620-mRNA-1;_AED=0.08;_eAED=0.08;_QI=183|1|1|1|0.5|0.71|7|863|146
chr1_3 exon 76988481 76988990 76988481 ID=Msa0141620-mRNA-1:exon:26771;Parent=Msa0141620-mRNA-1
chr1_3 exon 76990881 76991015 76990881 ID=Msa0141620-mRNA-1:exon:26772;Parent=Msa0141620-mRNA-1
chr1_3 exon 76991088 76991198 76991088 ID=Msa0141620-mRNA-1:exon:26773;Parent=Msa0141620-mRNA-1
chr1_3 exon 76992414 76992507 76992414 ID=Msa0141620-mRNA-1:exon:26774;Parent=Msa0141620-mRNA-1
chr1_3 exon 76993468 76993555 76993468 ID=Msa0141620-mRNA-1:exon:26775;Parent=Msa0141620-mRNA-1
chr1_3 exon 76993706 76993774 76993706 ID=Msa0141620-mRNA-1:exon:26776;Parent=Msa0141620-mRNA-1
chr1_3 exon 76994735 76995214 76994735 ID=Msa0141620-mRNA-1:exon:26777;Parent=Msa0141620-mRNA-1
chr1_3 five_prime_UTR 76988481 76988663 76988481 ID=Msa0141620-mRNA-1:five_prime_utr;Parent=Msa0141620-mRNA-1
chr1_3 CDS 76988664 76988990 76988664 ID=Msa0141620-mRNA-1:cds;Parent=Msa0141620-mRNA-1
chr1_3 CDS 76990881 76990994 76990881 ID=Msa0141620-mRNA-1:cds;Parent=Msa0141620-mRNA-1
chr1_3 three_prime_UTR 76990995 76991015 76990995 ID=Msa0141620-mRNA-1:three_prime_utr;Parent=Msa0141620-mRNA-1
chr1_3 three_prime_UTR 76991088 76991198 76991088 ID=Msa0141620-mRNA-1:three_prime_utr;Parent=Msa0141620-mRNA-1
chr1_3 three_prime_UTR 76992414 76992507 76992414 ID=Msa0141620-mRNA-1:three_prime_utr;Parent=Msa0141620-mRNA-1
chr1_3 three_prime_UTR 76993468 76993555 76993468 ID=Msa0141620-mRNA-1:three_prime_utr;Parent=Msa0141620-mRNA-1
chr1_3 three_prime_UTR 76993706 76993774 76993706 ID=Msa0141620-mRNA-1:three_prime_utr;Parent=Msa0141620-mRNA-1
chr1_3 three_prime_UTR 76994735 76995214 76994735 ID=Msa0141620-mRNA-1:three_prime_utr;Parent=Msa0141620-mRNA-1
Gene Sequence

>Msa0141620

ATGTTGAAACTTCCATGCAATGGGGTGGACCGGGTTCACCTCATGTCTCAATGCGGGTTTATGGGTCGACCCACTTCCTTTTTTACCGGCCGGAGCTCAGTTAAAGGATACCCGTTCTACAAAGGCGTTCCGGTTCAGGCTGTGGCGTCAGCTAAGGACGGTGCGGTGGTGAACCGGGTGAACGGATATTGGGAGTTTGGCGAACCGGTTGCGGCTTGGAGCTTATCTGAGGATGGATTGTCTTATAAAGAGAAGTTCATTGTTAGGAGCTATGAAGTTGGAATCAATAAAACTGCTACTGTTGAAACCGTTGCTAATCTCTTGCAGGAGGTTGGATGTAATCATGCTCAGATTGTTGGATTTTCAACTGATGGTTTTGCAACAAACACTACCATGAAAATATCATCTCATATGGGTGACTGCTCGCATGCATCACATTGA
Protein sequence

>Msa0141620

MLKLPCNGVDRVHLMSQCGFMGRPTSFFTGRSSVKGYPFYKGVPVQAVASAKDGAVVNRVNGYWEFGEPVAAWSLSEDGLSYKEKFIVRSYEVGINKTATVETVANLLQEVGCNHAQIVGFSTDGFATNTTMKISSHMGDCSHASH*