Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350060 | RHN65795.1 | 80.818 | 391 | 72 | 1 | 17 | 404 | 51 | 441 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350060 | sp|Q9S7T8|SPZX_ARATH | 52.320 | 388 | 178 | 3 | 22 | 402 | 3 | 390 | 2.94e-140 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350060 | A0A396IPH6 | 80.818 | 391 | 72 | 1 | 17 | 404 | 51 | 441 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0350040 | Msa0350060 | 0.868343 | 7.006749e-66 | -8.615850e-47 |
| Msa0350060 | Msa0396610 | 0.868986 | 4.342412e-66 | -8.615850e-47 |
| Msa0350060 | Msa0444180 | 0.911252 | 7.506757e-83 | -8.615850e-47 |
| Msa0350060 | Msa0454910 | 0.803969 | 2.704715e-49 | -8.615850e-47 |
| Msa0350060 | Msa0491740 | 0.834931 | 2.253344e-56 | -8.615850e-47 |
| Msa0350060 | Msa0492670 | 0.800754 | 1.242279e-48 | -8.615850e-47 |
| Msa0350060 | Msa0502760 | 0.830260 | 3.246857e-55 | -8.615850e-47 |
| Msa0350060 | Msa0655860 | 0.802831 | 4.655774e-49 | -8.615850e-47 |
| Msa0350060 | Msa0967580 | 0.812505 | 4.099509e-51 | -8.615850e-47 |
| Msa0350060 | Msa1196960 | 0.801920 | 7.170662e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350060 | MtrunA17_Chr3g0083861 | 80.818 | 391 | 72 | 1 | 17 | 404 | 51 | 441 | 0.0 | 618 |
| Msa0350060 | MtrunA17_Chr3g0133391 | 72.280 | 386 | 101 | 2 | 22 | 402 | 3 | 387 | 0.0 | 526 |
| Msa0350060 | MtrunA17_Chr8g0346621 | 68.930 | 383 | 115 | 3 | 22 | 402 | 15 | 395 | 0.0 | 516 |
| Msa0350060 | MtrunA17_Chr4g0023671 | 66.580 | 383 | 124 | 2 | 23 | 402 | 5 | 386 | 1.94e-179 | 504 |
| Msa0350060 | MtrunA17_Chr2g0302581 | 67.179 | 390 | 117 | 5 | 22 | 404 | 3 | 388 | 1.11e-176 | 498 |
| Msa0350060 | MtrunA17_Chr2g0302611 | 66.154 | 390 | 121 | 4 | 22 | 404 | 3 | 388 | 3.28e-176 | 496 |
| Msa0350060 | MtrunA17_Chr3g0133511 | 64.304 | 395 | 123 | 6 | 24 | 402 | 6 | 398 | 1.81e-170 | 482 |
| Msa0350060 | MtrunA17_Chr3g0133411 | 63.500 | 400 | 117 | 5 | 29 | 402 | 40 | 436 | 1.17e-167 | 476 |
| Msa0350060 | MtrunA17_Chr3g0096411 | 62.992 | 381 | 120 | 4 | 25 | 402 | 28 | 390 | 1.34e-165 | 469 |
| Msa0350060 | MtrunA17_Chr3g0133481 | 62.371 | 388 | 133 | 4 | 23 | 402 | 5 | 387 | 5.22e-163 | 463 |
| Msa0350060 | MtrunA17_Chr7g0233731 | 58.680 | 409 | 151 | 4 | 1 | 400 | 1 | 400 | 5.72e-162 | 463 |
| Msa0350060 | MtrunA17_Chr7g0233731 | 59.016 | 61 | 18 | 2 | 350 | 403 | 399 | 459 | 9.95e-13 | 69.3 |
| Msa0350060 | MtrunA17_Chr7g0233701 | 61.224 | 392 | 142 | 4 | 21 | 403 | 5 | 395 | 4.89e-155 | 443 |
| Msa0350060 | MtrunA17_Chr3g0083001 | 60.500 | 400 | 117 | 4 | 13 | 403 | 5 | 372 | 6.22e-152 | 434 |
| Msa0350060 | MtrunA17_Chr3g0133431 | 64.062 | 384 | 120 | 7 | 27 | 402 | 32 | 405 | 4.18e-151 | 433 |
| Msa0350060 | MtrunA17_Chr3g0134681 | 55.072 | 414 | 139 | 7 | 4 | 402 | 35 | 416 | 4.23e-140 | 405 |
| Msa0350060 | MtrunA17_Chr3g0083871 | 69.732 | 261 | 57 | 2 | 148 | 404 | 9 | 251 | 7.31e-117 | 340 |
| Msa0350060 | MtrunA17_Chr3g0133531 | 59.804 | 306 | 109 | 4 | 105 | 402 | 5 | 304 | 1.96e-115 | 339 |
| Msa0350060 | MtrunA17_Chr3g0133371 | 64.844 | 256 | 83 | 2 | 152 | 403 | 35 | 287 | 1.35e-111 | 328 |
| Msa0350060 | MtrunA17_Chr4g0046911 | 65.504 | 258 | 87 | 2 | 146 | 402 | 2 | 258 | 2.45e-111 | 327 |
| Msa0350060 | MtrunA17_Chr8g0358841 | 63.433 | 268 | 90 | 3 | 144 | 404 | 3 | 269 | 1.91e-110 | 325 |
| Msa0350060 | MtrunA17_Chr7g0233691 | 61.710 | 269 | 95 | 2 | 142 | 403 | 10 | 277 | 5.10e-110 | 324 |
| Msa0350060 | MtrunA17_Chr8g0346661 | 68.919 | 222 | 69 | 0 | 22 | 243 | 4 | 225 | 2.83e-103 | 305 |
| Msa0350060 | MtrunA17_Chr7g0233721 | 59.480 | 269 | 101 | 3 | 142 | 403 | 10 | 277 | 3.03e-101 | 301 |
| Msa0350060 | MtrunA17_Chr3g0083041 | 63.462 | 260 | 85 | 3 | 150 | 403 | 43 | 298 | 3.96e-100 | 300 |
| Msa0350060 | MtrunA17_Chr7g0233751 | 51.534 | 326 | 118 | 7 | 1 | 315 | 1 | 297 | 1.74e-98 | 296 |
| Msa0350060 | MtrunA17_Chr3g0141031 | 67.619 | 210 | 65 | 1 | 196 | 402 | 9 | 218 | 3.98e-89 | 268 |
| Msa0350060 | MtrunA17_Chr3g0143151 | 42.347 | 392 | 207 | 11 | 25 | 401 | 20 | 407 | 2.32e-86 | 268 |
| Msa0350060 | MtrunA17_Chr2g0302701 | 63.285 | 207 | 68 | 3 | 205 | 404 | 9 | 214 | 1.15e-80 | 247 |
| Msa0350060 | MtrunA17_Chr3g0133091 | 61.850 | 173 | 63 | 2 | 189 | 359 | 1 | 172 | 8.39e-66 | 208 |
| Msa0350060 | MtrunA17_Chr3g0133501 | 64.557 | 158 | 46 | 2 | 254 | 402 | 1 | 157 | 9.62e-61 | 194 |
| Msa0350060 | MtrunA17_Chr3g0132731 | 64.865 | 148 | 52 | 0 | 146 | 293 | 11 | 158 | 1.46e-59 | 191 |
| Msa0350060 | MtrunA17_Chr8g0346651 | 67.550 | 151 | 45 | 3 | 254 | 402 | 1 | 149 | 2.29e-58 | 187 |
| Msa0350060 | MtrunA17_Chr3g0133351 | 73.810 | 126 | 33 | 0 | 23 | 148 | 4 | 129 | 1.37e-57 | 186 |
| Msa0350060 | MtrunA17_Chr3g0133471 | 60.000 | 165 | 58 | 2 | 222 | 378 | 1 | 165 | 2.65e-57 | 185 |
| Msa0350060 | MtrunA17_Chr3g0134651 | 59.146 | 164 | 57 | 2 | 211 | 365 | 1 | 163 | 2.66e-55 | 180 |
| Msa0350060 | MtrunA17_Chr4g0046941 | 72.800 | 125 | 34 | 0 | 24 | 148 | 7 | 131 | 5.44e-55 | 178 |
| Msa0350060 | MtrunA17_Chr4g0046951 | 70.085 | 117 | 35 | 0 | 146 | 262 | 2 | 118 | 1.44e-50 | 166 |
| Msa0350060 | MtrunA17_Chr3g0133401 | 51.099 | 182 | 54 | 1 | 222 | 403 | 1 | 147 | 8.53e-50 | 165 |
| Msa0350060 | MtrunA17_Chr7g0233711 | 59.231 | 130 | 51 | 1 | 21 | 148 | 5 | 134 | 5.70e-47 | 158 |
| Msa0350060 | MtrunA17_Chr7g0233681 | 57.252 | 131 | 54 | 1 | 21 | 149 | 11 | 141 | 1.02e-46 | 157 |
| Msa0350060 | MtrunA17_Chr8g0358851 | 66.142 | 127 | 41 | 1 | 24 | 148 | 6 | 132 | 1.10e-46 | 156 |
| Msa0350060 | MtrunA17_Chr3g0134661 | 71.845 | 103 | 27 | 1 | 34 | 134 | 1 | 103 | 3.89e-44 | 149 |
| Msa0350060 | MtrunA17_Chr4g0046961 | 67.826 | 115 | 33 | 3 | 287 | 399 | 6 | 118 | 4.83e-40 | 139 |
| Msa0350060 | MtrunA17_Chr3g0133521 | 65.625 | 96 | 33 | 0 | 149 | 244 | 2 | 97 | 1.57e-37 | 131 |
| Msa0350060 | MtrunA17_Chr3g0141021 | 75.714 | 70 | 17 | 0 | 132 | 201 | 1 | 70 | 7.30e-32 | 115 |
| Msa0350060 | MtrunA17_Chr3g0132691 | 62.712 | 59 | 22 | 0 | 222 | 280 | 1 | 59 | 2.96e-18 | 78.6 |
| Msa0350060 | MtrunA17_Chr3g0133491 | 81.818 | 33 | 6 | 0 | 370 | 402 | 12 | 44 | 6.86e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350060 | AT1G47710.1 | 52.320 | 388 | 178 | 3 | 22 | 402 | 3 | 390 | 2.99e-141 | 408 |
| Msa0350060 | AT1G47710.2 | 52.320 | 388 | 178 | 3 | 22 | 402 | 30 | 417 | 1.30e-140 | 407 |
| Msa0350060 | AT3G45220.1 | 48.338 | 391 | 188 | 7 | 22 | 401 | 3 | 390 | 1.40e-121 | 358 |
| Msa0350060 | AT2G25240.1 | 48.082 | 391 | 181 | 7 | 22 | 401 | 3 | 382 | 2.67e-115 | 342 |
| Msa0350060 | AT2G26390.1 | 47.716 | 394 | 182 | 7 | 22 | 401 | 3 | 386 | 9.82e-115 | 340 |
| Msa0350060 | AT1G64030.1 | 42.455 | 391 | 192 | 6 | 22 | 401 | 3 | 371 | 6.71e-96 | 292 |
| Msa0350060 | AT2G35580.1 | 42.716 | 405 | 182 | 10 | 11 | 401 | 3 | 371 | 9.58e-94 | 286 |
| Msa0350060 | AT2G14540.1 | 41.397 | 401 | 202 | 7 | 11 | 401 | 20 | 397 | 9.92e-93 | 285 |
| Msa0350060 | AT1G62170.1 | 41.026 | 390 | 194 | 7 | 24 | 401 | 66 | 431 | 2.20e-90 | 280 |
| Msa0350060 | AT1G62170.2 | 37.825 | 423 | 194 | 8 | 24 | 401 | 66 | 464 | 2.52e-83 | 263 |
| Msa0350060 | AT1G64010.2 | 42.857 | 217 | 98 | 4 | 189 | 401 | 1 | 195 | 2.33e-50 | 169 |
| Msa0350060 | AT1G64010.1 | 43.069 | 202 | 89 | 4 | 204 | 401 | 2 | 181 | 2.48e-44 | 152 |
| Msa0350060 | AT1G62160.1 | 40.678 | 177 | 82 | 7 | 228 | 401 | 62 | 218 | 3.83e-29 | 113 |
| Msa0350060 | AT1G63280.1 | 48.305 | 118 | 57 | 2 | 145 | 260 | 5 | 120 | 2.33e-28 | 108 |
| Msa0350060 | AT1G51330.1 | 46.903 | 113 | 55 | 2 | 146 | 254 | 29 | 140 | 4.67e-22 | 93.6 |
| Msa0350060 | AT1G64020.1 | 32.143 | 112 | 73 | 3 | 29 | 138 | 10 | 120 | 1.86e-12 | 64.3 |
Find 80 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3_1:-14591099 | Msa0350060:CDS |
| TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3_1:-14591200 | Msa0350060:CDS |
| TTCATTGAAGTAAATGAAAA+AGG | 0.248061 | 3_1:-14590616 | Msa0350060:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3_1:+14591157 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3_1:+14591617 | None:intergenic |
| GTTGAGATCATCGGTGGATT+TGG | 0.331266 | 3_1:+14591776 | None:intergenic |
| CAATGCTAACAGTCCATCTT+TGG | 0.352985 | 3_1:+14590873 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3_1:-14590490 | Msa0350060:CDS |
| CTCTCGGACGCCGCTTTCAC+TGG | 0.368166 | 3_1:-14591723 | Msa0350060:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 3_1:+14591655 | None:intergenic |
| GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3_1:-14591199 | Msa0350060:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3_1:-14590736 | Msa0350060:CDS |
| TTCTTTCGAGAACAGATGTT+TGG | 0.401374 | 3_1:+14591908 | None:intergenic |
| TGCCAAGGGAAACATTTGTT+TGG | 0.406136 | 3_1:+14591934 | None:intergenic |
| CTTTGTCTTCTTTATAAGAA+AGG | 0.406350 | 3_1:-14590940 | Msa0350060:CDS |
| AACAGTCCATCTTTGGCATC+TGG | 0.409162 | 3_1:+14590880 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3_1:-14590743 | Msa0350060:CDS |
| GACATTTGATGTATTGAAAA+CGG | 0.441854 | 3_1:-14591064 | Msa0350060:CDS |
| ATTCGCGAAGAATCGTTGTT+TGG | 0.444075 | 3_1:+14591967 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3_1:+14591656 | None:intergenic |
| TTTCTTCCAGATGCCAAAGA+TGG | 0.454297 | 3_1:-14590886 | Msa0350060:CDS |
| GTTAAGCTATCAACTGATCT+TGG | 0.455204 | 3_1:+14591135 | None:intergenic |
| GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 3_1:-14590860 | Msa0350060:CDS |
| AGATGGACTGTTAGCATTGG+TGG | 0.461266 | 3_1:-14590869 | Msa0350060:CDS |
| CGATGATGCTTAGCACAACT+TGG | 0.463699 | 3_1:+14591850 | None:intergenic |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3_1:-14590589 | Msa0350060:CDS |
| CGGACGCCGCTTTCACTGGC+GGG | 0.466882 | 3_1:-14591719 | Msa0350060:CDS |
| TGACTGAGCTTCCATTCAAA+AGG | 0.469619 | 3_1:+14591025 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3_1:+14590520 | None:intergenic |
| CATCCCCTCGGTGGTCATGA+AGG | 0.485289 | 3_1:+14590996 | None:intergenic |
| AGACTATCGTGTAGTAAGTC+AGG | 0.494602 | 3_1:+14590829 | None:intergenic |
| GTGCTAAGCATCATCGCTGC+TGG | 0.494658 | 3_1:-14591843 | Msa0350060:CDS |
| AACCAAACAAATGTTTCCCT+TGG | 0.496560 | 3_1:-14591936 | Msa0350060:CDS |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3_1:-14590508 | Msa0350060:CDS |
| CTCTGTTGATTTCATAACCA+AGG | 0.503875 | 3_1:-14591595 | Msa0350060:intron |
| CACTCTACTTTAAAGGAGCA+TGG | 0.505591 | 3_1:-14591092 | Msa0350060:CDS |
| GCGAAGAATCGTTGTTTGGT+TGG | 0.508179 | 3_1:+14591971 | None:intergenic |
| TCATCTACTTCTACTTCAGC+AGG | 0.509971 | 3_1:+14590802 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3_1:-14591834 | Msa0350060:CDS |
| TTTGGTTGGTGATTGATTCA+CGG | 0.515615 | 3_1:+14591985 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3_1:+14590521 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3_1:-14591835 | Msa0350060:CDS |
| AAGGGAAACATTTGTTTGGT+TGG | 0.522469 | 3_1:+14591938 | None:intergenic |
| CCTTGTTTCTATCGTCCTCT+CGG | 0.523904 | 3_1:-14591739 | Msa0350060:CDS |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3_1:+14590703 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3_1:+14590483 | None:intergenic |
| AACAAATGTTTCCCTTGGCA+TGG | 0.538587 | 3_1:-14591931 | Msa0350060:CDS |
| TCGGACGCCGCTTTCACTGG+CGG | 0.540020 | 3_1:-14591720 | Msa0350060:CDS |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3_1:+14590454 | None:intergenic |
| GCGAGGCCCGCCAGTGAAAG+CGG | 0.556128 | 3_1:+14591713 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3_1:+14590647 | None:intergenic |
| ACAGATGTTTGGCCATGCCA+AGG | 0.566119 | 3_1:+14591919 | None:intergenic |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3_1:+14591138 | None:intergenic |
| ATGAATAAACTGCATCCCCT+CGG | 0.570074 | 3_1:+14590984 | None:intergenic |
| ATCCCCTCGGTGGTCATGAA+GGG | 0.571981 | 3_1:+14590997 | None:intergenic |
| GGCGAGGTTGTTGAGATCAT+CGG | 0.582316 | 3_1:+14591767 | None:intergenic |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3_1:+14591809 | None:intergenic |
| TGCATTAGCAAAGATGAGGC+GGG | 0.588872 | 3_1:+14591113 | None:intergenic |
| TTTGAATGGAAGCTCAGTCA+AGG | 0.589562 | 3_1:-14591022 | Msa0350060:CDS |
| CAGATGTTTGGCCATGCCAA+GGG | 0.601831 | 3_1:+14591920 | None:intergenic |
| GTTCCCTTCATGACCACCGA+GGG | 0.602185 | 3_1:-14591000 | Msa0350060:CDS |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3_1:+14591810 | None:intergenic |
| GACGATAGAAACAAGGTGAG+AGG | 0.606218 | 3_1:+14591746 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3_1:-14590731 | Msa0350060:CDS |
| CATCGGTGGATTTGGACTCG+AGG | 0.615894 | 3_1:+14591784 | None:intergenic |
| CCGAGAGGACGATAGAAACA+AGG | 0.616826 | 3_1:+14591739 | None:intergenic |
| GTGCATTAGCAAAGATGAGG+CGG | 0.619571 | 3_1:+14591112 | None:intergenic |
| AGCACAACTTGGAGTGACAA+TGG | 0.624764 | 3_1:+14591861 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3_1:+14590524 | None:intergenic |
| AGAGTGCATTAGCAAAGATG+AGG | 0.641780 | 3_1:+14591109 | None:intergenic |
| CAAAGATGGACTGTTAGCAT+TGG | 0.645848 | 3_1:-14590872 | Msa0350060:CDS |
| CAGTGAAAGCGGCGTCCGAG+AGG | 0.655885 | 3_1:+14591724 | None:intergenic |
| AATAAACTGCATCCCCTCGG+TGG | 0.665848 | 3_1:+14590987 | None:intergenic |
| GAGGTTGTTGAGATCATCGG+TGG | 0.666044 | 3_1:+14591770 | None:intergenic |
| TAGAAACAAGGTGAGAGGCG+AGG | 0.684792 | 3_1:+14591751 | None:intergenic |
| CTTGGTTATGAAATCAACAG+AGG | 0.695380 | 3_1:+14591596 | None:intergenic |
| ATACACCATCAACAAAAGAG+AGG | 0.697514 | 3_1:+14591691 | None:intergenic |
| CCATCAACAAAAGAGAGGCG+AGG | 0.704628 | 3_1:+14591696 | None:intergenic |
| TTCCCTTCATGACCACCGAG+GGG | 0.716157 | 3_1:-14590999 | Msa0350060:CDS |
| GGTTCCCTTCATGACCACCG+AGG | 0.739875 | 3_1:-14591001 | Msa0350060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTAAATTAATTTA+AGG | - | chr3_1:14590960-14590979 | Msa0350060:CDS | 10.0% |
| !! | TTTCATGTAAATTAATTTAA+GGG | - | chr3_1:14590961-14590980 | Msa0350060:CDS | 10.0% |
| !! | ATTTCATGTAAATTAATTTA+AGG | - | chr3_1:14590960-14590979 | Msa0350060:CDS | 10.0% |
| !! | TTTCATGTAAATTAATTTAA+GGG | - | chr3_1:14590961-14590980 | Msa0350060:CDS | 10.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | - | chr3_1:14591238-14591257 | Msa0350060:intron | 15.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | - | chr3_1:14591238-14591257 | Msa0350060:intron | 15.0% |
| !! | TGCTGTGAAAAAAAAAAAAA+GGG | + | chr3_1:14590926-14590945 | None:intergenic | 20.0% |
| !! | TTGCTGTGAAAAAAAAAAAA+AGG | + | chr3_1:14590927-14590946 | None:intergenic | 20.0% |
| !!! | TACTATAGATTTTTTTGAAG+AGG | + | chr3_1:14591079-14591098 | None:intergenic | 20.0% |
| !! | CAAAAAAATCTATAGTACTA+AGG | - | chr3_1:14591082-14591101 | Msa0350060:CDS | 20.0% |
| !! | GTGAAAATTAAACCAATAAA+AGG | - | chr3_1:14591166-14591185 | Msa0350060:CDS | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | - | chr3_1:14591279-14591298 | Msa0350060:intron | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | - | chr3_1:14591280-14591299 | Msa0350060:intron | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | + | chr3_1:14591713-14591732 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | + | chr3_1:14591835-14591854 | None:intergenic | 20.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | - | chr3_1:14591863-14591882 | Msa0350060:CDS | 20.0% |
| !! | TGCTGTGAAAAAAAAAAAAA+GGG | + | chr3_1:14590926-14590945 | None:intergenic | 20.0% |
| !! | TTGCTGTGAAAAAAAAAAAA+AGG | + | chr3_1:14590927-14590946 | None:intergenic | 20.0% |
| !!! | TACTATAGATTTTTTTGAAG+AGG | + | chr3_1:14591079-14591098 | None:intergenic | 20.0% |
| !! | CAAAAAAATCTATAGTACTA+AGG | - | chr3_1:14591082-14591101 | Msa0350060:CDS | 20.0% |
| !! | GTGAAAATTAAACCAATAAA+AGG | - | chr3_1:14591166-14591185 | Msa0350060:CDS | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | - | chr3_1:14591279-14591298 | Msa0350060:intron | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | - | chr3_1:14591280-14591299 | Msa0350060:intron | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | + | chr3_1:14591713-14591732 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | + | chr3_1:14591835-14591854 | None:intergenic | 20.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | - | chr3_1:14591863-14591882 | Msa0350060:CDS | 20.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | + | chr3_1:14590865-14590884 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | + | chr3_1:14591124-14591143 | None:intergenic | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | + | chr3_1:14591125-14591144 | None:intergenic | 25.0% |
| !! | AGCATAAGAAAACCTTTTAT+TGG | + | chr3_1:14591181-14591200 | None:intergenic | 25.0% |
| ! | GACATTTGATGTATTGAAAA+CGG | - | chr3_1:14591415-14591434 | Msa0350060:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | - | chr3_1:14591443-14591462 | Msa0350060:intron | 25.0% |
| ! | CTTTGTCTTCTTTATAAGAA+AGG | - | chr3_1:14591539-14591558 | Msa0350060:intron | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | + | chr3_1:14591961-14591980 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | + | chr3_1:14591962-14591981 | None:intergenic | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | + | chr3_1:14590865-14590884 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | + | chr3_1:14591124-14591143 | None:intergenic | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | + | chr3_1:14591125-14591144 | None:intergenic | 25.0% |
| !! | AGCATAAGAAAACCTTTTAT+TGG | + | chr3_1:14591181-14591200 | None:intergenic | 25.0% |
| ! | GACATTTGATGTATTGAAAA+CGG | - | chr3_1:14591415-14591434 | Msa0350060:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | - | chr3_1:14591443-14591462 | Msa0350060:intron | 25.0% |
| ! | CTTTGTCTTCTTTATAAGAA+AGG | - | chr3_1:14591539-14591558 | Msa0350060:intron | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | + | chr3_1:14591961-14591980 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | + | chr3_1:14591962-14591981 | None:intergenic | 25.0% |
| ! | ACCAATTCTACACTGATTAA+AGG | - | chr3_1:14591011-14591030 | Msa0350060:CDS | 30.0% |
| TCCTTTAATCAGTGTAGAAT+TGG | + | chr3_1:14591015-14591034 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | + | chr3_1:14591325-14591344 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | - | chr3_1:14591736-14591755 | Msa0350060:CDS | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | + | chr3_1:14591958-14591977 | None:intergenic | 30.0% | |
| ! | ACCAATTCTACACTGATTAA+AGG | - | chr3_1:14591011-14591030 | Msa0350060:CDS | 30.0% |
| TCCTTTAATCAGTGTAGAAT+TGG | + | chr3_1:14591015-14591034 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | + | chr3_1:14591325-14591344 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | - | chr3_1:14591736-14591755 | Msa0350060:CDS | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | + | chr3_1:14591958-14591977 | None:intergenic | 30.0% | |
| !! | TTTGGTTGGTGATTGATTCA+CGG | + | chr3_1:14590497-14590516 | None:intergenic | 35.0% |
| AAGGGAAACATTTGTTTGGT+TGG | + | chr3_1:14590544-14590563 | None:intergenic | 35.0% | |
| AACCAAACAAATGTTTCCCT+TGG | - | chr3_1:14590543-14590562 | Msa0350060:CDS | 35.0% | |
| TTCTTTCGAGAACAGATGTT+TGG | + | chr3_1:14590574-14590593 | None:intergenic | 35.0% | |
| ATACACCATCAACAAAAGAG+AGG | + | chr3_1:14590791-14590810 | None:intergenic | 35.0% | |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | - | chr3_1:14590790-14590809 | Msa0350060:CDS | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | - | chr3_1:14590791-14590810 | Msa0350060:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | + | chr3_1:14590840-14590859 | None:intergenic | 35.0% |
| ! | GGAAGACAAGATTCTTTTGA+AGG | + | chr3_1:14590844-14590863 | None:intergenic | 35.0% |
| CTTGGTTATGAAATCAACAG+AGG | + | chr3_1:14590886-14590905 | None:intergenic | 35.0% | |
| !! | CTCTGTTGATTTCATAACCA+AGG | - | chr3_1:14590884-14590903 | Msa0350060:CDS | 35.0% |
| CAGTGTAGAATTGGTATACT+AGG | + | chr3_1:14591006-14591025 | None:intergenic | 35.0% | |
| ! | TAACAAAGTGTTTCGTCACA+TGG | + | chr3_1:14591052-14591071 | None:intergenic | 35.0% |
| TGCTAGAAAACAATAAAGGG+AGG | + | chr3_1:14591121-14591140 | None:intergenic | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | + | chr3_1:14591347-14591366 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | - | chr3_1:14591380-14591399 | Msa0350060:intron | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | - | chr3_1:14591743-14591762 | Msa0350060:CDS | 35.0% | |
| !! | TTTGGTTGGTGATTGATTCA+CGG | + | chr3_1:14590497-14590516 | None:intergenic | 35.0% |
| AAGGGAAACATTTGTTTGGT+TGG | + | chr3_1:14590544-14590563 | None:intergenic | 35.0% | |
| AACCAAACAAATGTTTCCCT+TGG | - | chr3_1:14590543-14590562 | Msa0350060:CDS | 35.0% | |
| TTCTTTCGAGAACAGATGTT+TGG | + | chr3_1:14590574-14590593 | None:intergenic | 35.0% | |
| ATACACCATCAACAAAAGAG+AGG | + | chr3_1:14590791-14590810 | None:intergenic | 35.0% | |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | - | chr3_1:14590790-14590809 | Msa0350060:CDS | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | - | chr3_1:14590791-14590810 | Msa0350060:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | + | chr3_1:14590840-14590859 | None:intergenic | 35.0% |
| ! | GGAAGACAAGATTCTTTTGA+AGG | + | chr3_1:14590844-14590863 | None:intergenic | 35.0% |
| CTTGGTTATGAAATCAACAG+AGG | + | chr3_1:14590886-14590905 | None:intergenic | 35.0% | |
| !! | CTCTGTTGATTTCATAACCA+AGG | - | chr3_1:14590884-14590903 | Msa0350060:CDS | 35.0% |
| CAGTGTAGAATTGGTATACT+AGG | + | chr3_1:14591006-14591025 | None:intergenic | 35.0% | |
| ! | TAACAAAGTGTTTCGTCACA+TGG | + | chr3_1:14591052-14591071 | None:intergenic | 35.0% |
| TGCTAGAAAACAATAAAGGG+AGG | + | chr3_1:14591121-14591140 | None:intergenic | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | + | chr3_1:14591347-14591366 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | - | chr3_1:14591380-14591399 | Msa0350060:intron | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | - | chr3_1:14591743-14591762 | Msa0350060:CDS | 35.0% | |
| ATTCGCGAAGAATCGTTGTT+TGG | + | chr3_1:14590515-14590534 | None:intergenic | 40.0% | |
| TGCCAAGGGAAACATTTGTT+TGG | + | chr3_1:14590548-14590567 | None:intergenic | 40.0% | |
| AACAAATGTTTCCCTTGGCA+TGG | - | chr3_1:14590548-14590567 | Msa0350060:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | + | chr3_1:14590826-14590845 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | + | chr3_1:14590827-14590846 | None:intergenic | 40.0% | |
| AAGCTATCAACTGATCTTGG+AGG | + | chr3_1:14591344-14591363 | None:intergenic | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | + | chr3_1:14591373-14591392 | None:intergenic | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | - | chr3_1:14591387-14591406 | Msa0350060:intron | 40.0% |
| TGACTGAGCTTCCATTCAAA+AGG | + | chr3_1:14591457-14591476 | None:intergenic | 40.0% | |
| TTTGAATGGAAGCTCAGTCA+AGG | - | chr3_1:14591457-14591476 | Msa0350060:intron | 40.0% | |
| ATGAATAAACTGCATCCCCT+CGG | + | chr3_1:14591498-14591517 | None:intergenic | 40.0% | |
| TTTCTTCCAGATGCCAAAGA+TGG | - | chr3_1:14591593-14591612 | Msa0350060:intron | 40.0% | |
| CAATGCTAACAGTCCATCTT+TGG | + | chr3_1:14591609-14591628 | None:intergenic | 40.0% | |
| !! | CAAAGATGGACTGTTAGCAT+TGG | - | chr3_1:14591607-14591626 | Msa0350060:CDS | 40.0% |
| AGACTATCGTGTAGTAAGTC+AGG | + | chr3_1:14591653-14591672 | None:intergenic | 40.0% | |
| TCATCTACTTCTACTTCAGC+AGG | + | chr3_1:14591680-14591699 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | - | chr3_1:14591748-14591767 | Msa0350060:CDS | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | - | chr3_1:14591784-14591803 | Msa0350060:CDS | 40.0% | |
| !! | ACCATTTTTGTCAAACCTCC+AGG | + | chr3_1:14591788-14591807 | None:intergenic | 40.0% |
| TGGAGGTTTGACAAAAATGG+TGG | - | chr3_1:14591787-14591806 | Msa0350060:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | - | chr3_1:14591971-14591990 | Msa0350060:CDS | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | - | chr3_1:14591989-14592008 | Msa0350060:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | + | chr3_1:14591999-14592018 | None:intergenic | 40.0% | |
| ATTCGCGAAGAATCGTTGTT+TGG | + | chr3_1:14590515-14590534 | None:intergenic | 40.0% | |
| TGCCAAGGGAAACATTTGTT+TGG | + | chr3_1:14590548-14590567 | None:intergenic | 40.0% | |
| AACAAATGTTTCCCTTGGCA+TGG | - | chr3_1:14590548-14590567 | Msa0350060:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | + | chr3_1:14590826-14590845 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | + | chr3_1:14590827-14590846 | None:intergenic | 40.0% | |
| AAGCTATCAACTGATCTTGG+AGG | + | chr3_1:14591344-14591363 | None:intergenic | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | + | chr3_1:14591373-14591392 | None:intergenic | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | - | chr3_1:14591387-14591406 | Msa0350060:intron | 40.0% |
| TGACTGAGCTTCCATTCAAA+AGG | + | chr3_1:14591457-14591476 | None:intergenic | 40.0% | |
| TTTGAATGGAAGCTCAGTCA+AGG | - | chr3_1:14591457-14591476 | Msa0350060:intron | 40.0% | |
| ATGAATAAACTGCATCCCCT+CGG | + | chr3_1:14591498-14591517 | None:intergenic | 40.0% | |
| TTTCTTCCAGATGCCAAAGA+TGG | - | chr3_1:14591593-14591612 | Msa0350060:intron | 40.0% | |
| CAATGCTAACAGTCCATCTT+TGG | + | chr3_1:14591609-14591628 | None:intergenic | 40.0% | |
| !! | CAAAGATGGACTGTTAGCAT+TGG | - | chr3_1:14591607-14591626 | Msa0350060:CDS | 40.0% |
| AGACTATCGTGTAGTAAGTC+AGG | + | chr3_1:14591653-14591672 | None:intergenic | 40.0% | |
| TCATCTACTTCTACTTCAGC+AGG | + | chr3_1:14591680-14591699 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | - | chr3_1:14591748-14591767 | Msa0350060:CDS | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | - | chr3_1:14591784-14591803 | Msa0350060:CDS | 40.0% | |
| !! | ACCATTTTTGTCAAACCTCC+AGG | + | chr3_1:14591788-14591807 | None:intergenic | 40.0% |
| TGGAGGTTTGACAAAAATGG+TGG | - | chr3_1:14591787-14591806 | Msa0350060:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | - | chr3_1:14591971-14591990 | Msa0350060:CDS | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | - | chr3_1:14591989-14592008 | Msa0350060:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | + | chr3_1:14591999-14592018 | None:intergenic | 40.0% | |
| GCGAAGAATCGTTGTTTGGT+TGG | + | chr3_1:14590511-14590530 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGTGACAA+TGG | + | chr3_1:14590621-14590640 | None:intergenic | 45.0% | |
| CGATGATGCTTAGCACAACT+TGG | + | chr3_1:14590632-14590651 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | + | chr3_1:14590672-14590691 | None:intergenic | 45.0% | |
| ! | GTTGAGATCATCGGTGGATT+TGG | + | chr3_1:14590706-14590725 | None:intergenic | 45.0% |
| GACGATAGAAACAAGGTGAG+AGG | + | chr3_1:14590736-14590755 | None:intergenic | 45.0% | |
| !! | CCTTGTTTCTATCGTCCTCT+CGG | - | chr3_1:14590740-14590759 | Msa0350060:CDS | 45.0% |
| GAGCTGTGTAACACAAACCT+TGG | + | chr3_1:14590904-14590923 | None:intergenic | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | + | chr3_1:14591041-14591060 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | - | chr3_1:14591299-14591318 | Msa0350060:intron | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | + | chr3_1:14591369-14591388 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | + | chr3_1:14591370-14591389 | None:intergenic | 45.0% | |
| AACAGTCCATCTTTGGCATC+TGG | + | chr3_1:14591602-14591621 | None:intergenic | 45.0% | |
| !! | AGATGGACTGTTAGCATTGG+TGG | - | chr3_1:14591610-14591629 | Msa0350060:CDS | 45.0% |
| !! | GTTAGCATTGGTGGAGAAGT+TGG | - | chr3_1:14591619-14591638 | Msa0350060:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | - | chr3_1:14591767-14591786 | Msa0350060:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | - | chr3_1:14591770-14591789 | Msa0350060:CDS | 45.0% |
| GCGAAGAATCGTTGTTTGGT+TGG | + | chr3_1:14590511-14590530 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGTGACAA+TGG | + | chr3_1:14590621-14590640 | None:intergenic | 45.0% | |
| CGATGATGCTTAGCACAACT+TGG | + | chr3_1:14590632-14590651 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | + | chr3_1:14590672-14590691 | None:intergenic | 45.0% | |
| ! | GTTGAGATCATCGGTGGATT+TGG | + | chr3_1:14590706-14590725 | None:intergenic | 45.0% |
| GACGATAGAAACAAGGTGAG+AGG | + | chr3_1:14590736-14590755 | None:intergenic | 45.0% | |
| !! | CCTTGTTTCTATCGTCCTCT+CGG | - | chr3_1:14590740-14590759 | Msa0350060:CDS | 45.0% |
| GAGCTGTGTAACACAAACCT+TGG | + | chr3_1:14590904-14590923 | None:intergenic | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | + | chr3_1:14591041-14591060 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | - | chr3_1:14591299-14591318 | Msa0350060:intron | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | + | chr3_1:14591369-14591388 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | + | chr3_1:14591370-14591389 | None:intergenic | 45.0% | |
| AACAGTCCATCTTTGGCATC+TGG | + | chr3_1:14591602-14591621 | None:intergenic | 45.0% | |
| !! | AGATGGACTGTTAGCATTGG+TGG | - | chr3_1:14591610-14591629 | Msa0350060:CDS | 45.0% |
| !! | GTTAGCATTGGTGGAGAAGT+TGG | - | chr3_1:14591619-14591638 | Msa0350060:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | - | chr3_1:14591767-14591786 | Msa0350060:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | - | chr3_1:14591770-14591789 | Msa0350060:CDS | 45.0% |
| CAGATGTTTGGCCATGCCAA+GGG | + | chr3_1:14590562-14590581 | None:intergenic | 50.0% | |
| ACAGATGTTTGGCCATGCCA+AGG | + | chr3_1:14590563-14590582 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | + | chr3_1:14590673-14590692 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATCATCGG+TGG | + | chr3_1:14590712-14590731 | None:intergenic | 50.0% | |
| GGCGAGGTTGTTGAGATCAT+CGG | + | chr3_1:14590715-14590734 | None:intergenic | 50.0% | |
| TAGAAACAAGGTGAGAGGCG+AGG | + | chr3_1:14590731-14590750 | None:intergenic | 50.0% | |
| CCGAGAGGACGATAGAAACA+AGG | + | chr3_1:14590743-14590762 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | + | chr3_1:14590786-14590805 | None:intergenic | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | - | chr3_1:14590783-14590802 | Msa0350060:CDS | 50.0% |
| AATAAACTGCATCCCCTCGG+TGG | + | chr3_1:14591495-14591514 | None:intergenic | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | + | chr3_1:14591779-14591798 | None:intergenic | 50.0% | |
| CAGATGTTTGGCCATGCCAA+GGG | + | chr3_1:14590562-14590581 | None:intergenic | 50.0% | |
| ACAGATGTTTGGCCATGCCA+AGG | + | chr3_1:14590563-14590582 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | + | chr3_1:14590673-14590692 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATCATCGG+TGG | + | chr3_1:14590712-14590731 | None:intergenic | 50.0% | |
| GGCGAGGTTGTTGAGATCAT+CGG | + | chr3_1:14590715-14590734 | None:intergenic | 50.0% | |
| TAGAAACAAGGTGAGAGGCG+AGG | + | chr3_1:14590731-14590750 | None:intergenic | 50.0% | |
| CCGAGAGGACGATAGAAACA+AGG | + | chr3_1:14590743-14590762 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | + | chr3_1:14590786-14590805 | None:intergenic | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | - | chr3_1:14590783-14590802 | Msa0350060:CDS | 50.0% |
| AATAAACTGCATCCCCTCGG+TGG | + | chr3_1:14591495-14591514 | None:intergenic | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | + | chr3_1:14591779-14591798 | None:intergenic | 50.0% | |
| GTGCTAAGCATCATCGCTGC+TGG | - | chr3_1:14590636-14590655 | Msa0350060:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | - | chr3_1:14590645-14590664 | Msa0350060:CDS | 55.0% |
| ! | CATCGGTGGATTTGGACTCG+AGG | + | chr3_1:14590698-14590717 | None:intergenic | 55.0% |
| GTTCCCTTCATGACCACCGA+GGG | - | chr3_1:14591479-14591498 | Msa0350060:intron | 55.0% | |
| TTCCCTTCATGACCACCGAG+GGG | - | chr3_1:14591480-14591499 | Msa0350060:intron | 55.0% | |
| ATCCCCTCGGTGGTCATGAA+GGG | + | chr3_1:14591485-14591504 | None:intergenic | 55.0% | |
| GTGCTAAGCATCATCGCTGC+TGG | - | chr3_1:14590636-14590655 | Msa0350060:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | - | chr3_1:14590645-14590664 | Msa0350060:CDS | 55.0% |
| ! | CATCGGTGGATTTGGACTCG+AGG | + | chr3_1:14590698-14590717 | None:intergenic | 55.0% |
| GTTCCCTTCATGACCACCGA+GGG | - | chr3_1:14591479-14591498 | Msa0350060:intron | 55.0% | |
| TTCCCTTCATGACCACCGAG+GGG | - | chr3_1:14591480-14591499 | Msa0350060:intron | 55.0% | |
| ATCCCCTCGGTGGTCATGAA+GGG | + | chr3_1:14591485-14591504 | None:intergenic | 55.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | - | chr3_1:14590644-14590663 | Msa0350060:CDS | 60.0% |
| GGTTCCCTTCATGACCACCG+AGG | - | chr3_1:14591478-14591497 | Msa0350060:intron | 60.0% | |
| CATCCCCTCGGTGGTCATGA+AGG | + | chr3_1:14591486-14591505 | None:intergenic | 60.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | - | chr3_1:14591890-14591909 | Msa0350060:CDS | 60.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | - | chr3_1:14590644-14590663 | Msa0350060:CDS | 60.0% |
| GGTTCCCTTCATGACCACCG+AGG | - | chr3_1:14591478-14591497 | Msa0350060:intron | 60.0% | |
| CATCCCCTCGGTGGTCATGA+AGG | + | chr3_1:14591486-14591505 | None:intergenic | 60.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | - | chr3_1:14591890-14591909 | Msa0350060:CDS | 60.0% | |
| CAGTGAAAGCGGCGTCCGAG+AGG | + | chr3_1:14590758-14590777 | None:intergenic | 65.0% | |
| ! | CTCTCGGACGCCGCTTTCAC+TGG | - | chr3_1:14590756-14590775 | Msa0350060:CDS | 65.0% |
| ! | TCGGACGCCGCTTTCACTGG+CGG | - | chr3_1:14590759-14590778 | Msa0350060:CDS | 65.0% |
| CAGTGAAAGCGGCGTCCGAG+AGG | + | chr3_1:14590758-14590777 | None:intergenic | 65.0% | |
| ! | CTCTCGGACGCCGCTTTCAC+TGG | - | chr3_1:14590756-14590775 | Msa0350060:CDS | 65.0% |
| ! | TCGGACGCCGCTTTCACTGG+CGG | - | chr3_1:14590759-14590778 | Msa0350060:CDS | 65.0% |
| ! | CGGACGCCGCTTTCACTGGC+GGG | - | chr3_1:14590760-14590779 | Msa0350060:CDS | 70.0% |
| GCGAGGCCCGCCAGTGAAAG+CGG | + | chr3_1:14590769-14590788 | None:intergenic | 70.0% | |
| ! | CGGACGCCGCTTTCACTGGC+GGG | - | chr3_1:14590760-14590779 | Msa0350060:CDS | 70.0% |
| GCGAGGCCCGCCAGTGAAAG+CGG | + | chr3_1:14590769-14590788 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 14590462 | 14592039 | 14590462 | ID=Msa0350060;Name=Msa0350060 |
| chr3_1 | mRNA | 14590462 | 14592039 | 14590462 | ID=Msa0350060-mRNA-1;Parent=Msa0350060;Name=Msa0350060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|404 |
| chr3_1 | exon | 14591596 | 14592039 | 14591596 | ID=Msa0350060-mRNA-1:exon:3628;Parent=Msa0350060-mRNA-1 |
| chr3_1 | exon | 14590462 | 14591232 | 14590462 | ID=Msa0350060-mRNA-1:exon:3627;Parent=Msa0350060-mRNA-1 |
| chr3_1 | CDS | 14591596 | 14592039 | 14591596 | ID=Msa0350060-mRNA-1:cds;Parent=Msa0350060-mRNA-1 |
| chr3_1 | CDS | 14590462 | 14591232 | 14590462 | ID=Msa0350060-mRNA-1:cds;Parent=Msa0350060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
