Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454910 | XP_027189543.1 | 67.391 | 506 | 131 | 9 | 14 | 496 | 754 | 1248 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454910 | sp|Q10251|IF2P_SCHPO | 45.019 | 522 | 229 | 8 | 10 | 492 | 445 | 947 | 5.32e-132 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454910 | A0A3Q7XQ97 | 67.391 | 506 | 131 | 9 | 14 | 496 | 754 | 1248 | 0.0 | 647 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0454910 | 0.820097 | 8.209246e-53 | -8.615850e-47 |
| Msa0016570 | Msa0454910 | 0.840915 | 6.519469e-58 | -8.615850e-47 |
| Msa0102070 | Msa0454910 | 0.837956 | 3.826640e-57 | -8.615850e-47 |
| Msa0111510 | Msa0454910 | 0.826986 | 2.007370e-54 | -8.615850e-47 |
| Msa0123810 | Msa0454910 | 0.821032 | 5.008365e-53 | -8.615850e-47 |
| Msa0124100 | Msa0454910 | 0.800941 | 1.137963e-48 | -8.615850e-47 |
| Msa0142220 | Msa0454910 | 0.810781 | 9.718393e-51 | -8.615850e-47 |
| Msa0145750 | Msa0454910 | 0.862933 | 3.566339e-64 | -8.615850e-47 |
| Msa0153910 | Msa0454910 | 0.818426 | 1.972098e-52 | -8.615850e-47 |
| Msa0200000 | Msa0454910 | 0.824199 | 9.188405e-54 | -8.615850e-47 |
| Msa0227480 | Msa0454910 | 0.842816 | 2.051871e-58 | -8.615850e-47 |
| Msa0232850 | Msa0454910 | 0.844794 | 6.061163e-59 | -8.615850e-47 |
| Msa0235140 | Msa0454910 | 0.808235 | 3.421443e-50 | -8.615850e-47 |
| Msa0365500 | Msa0454910 | 0.824098 | 9.701909e-54 | -8.615850e-47 |
| Msa0366580 | Msa0454910 | 0.820243 | 7.601189e-53 | -8.615850e-47 |
| Msa0384800 | Msa0454910 | 0.875098 | 4.026702e-68 | -8.615850e-47 |
| Msa0394970 | Msa0454910 | 0.821568 | 3.767083e-53 | -8.615850e-47 |
| Msa0396600 | Msa0454910 | 0.838998 | 2.061187e-57 | -8.615850e-47 |
| Msa0406120 | Msa0454910 | 0.830800 | 2.395032e-55 | -8.615850e-47 |
| Msa0414410 | Msa0454910 | 0.858555 | 7.600331e-63 | -8.615850e-47 |
| Msa0414420 | Msa0454910 | 0.878354 | 3.004488e-69 | -8.615850e-47 |
| Msa0423020 | Msa0454910 | 0.812415 | 4.289381e-51 | -8.615850e-47 |
| Msa0435230 | Msa0454910 | 0.802637 | 5.104123e-49 | -8.615850e-47 |
| Msa0436780 | Msa0454910 | 0.823094 | 1.666549e-53 | -8.615850e-47 |
| Msa0438620 | Msa0454910 | 0.810430 | 1.156991e-50 | -8.615850e-47 |
| Msa0444180 | Msa0454910 | 0.828057 | 1.111017e-54 | -8.615850e-47 |
| Msa0450000 | Msa0454910 | 0.817325 | 3.496775e-52 | -8.615850e-47 |
| Msa0451730 | Msa0454910 | 0.823065 | 1.693084e-53 | -8.615850e-47 |
| Msa0452900 | Msa0454910 | 0.889209 | 2.971624e-73 | -8.615850e-47 |
| Msa0453120 | Msa0454910 | 0.833681 | 4.637706e-56 | -8.615850e-47 |
| Msa0454370 | Msa0454910 | 0.845999 | 2.859451e-59 | -8.615850e-47 |
| Msa0454910 | Msa0459160 | 0.825260 | 5.165703e-54 | -8.615850e-47 |
| Msa0454910 | Msa0491590 | 0.832920 | 7.176430e-56 | -8.615850e-47 |
| Msa0454910 | Msa0502760 | 0.883623 | 3.836547e-71 | -8.615850e-47 |
| Msa0454910 | Msa0506270 | 0.828491 | 8.730013e-55 | -8.615850e-47 |
| Msa0454910 | Msa0548060 | 0.812417 | 4.284477e-51 | -8.615850e-47 |
| Msa0454910 | Msa0564890 | 0.869789 | 2.379762e-66 | -8.615850e-47 |
| Msa0454910 | Msa0596150 | 0.831333 | 1.772053e-55 | -8.615850e-47 |
| Msa0454910 | Msa0604350 | 0.806191 | 9.272097e-50 | -8.615850e-47 |
| Msa0454910 | Msa0636170 | 0.832392 | 9.702778e-56 | -8.615850e-47 |
| Msa0454910 | Msa0639610 | 0.808733 | 2.678239e-50 | -8.615850e-47 |
| Msa0454910 | Msa0678930 | 0.817506 | 3.182959e-52 | -8.615850e-47 |
| Msa0454910 | Msa0694370 | 0.814321 | 1.635056e-51 | -8.615850e-47 |
| Msa0454910 | Msa0726140 | 0.865187 | 7.081570e-65 | -8.615850e-47 |
| Msa0454910 | Msa0729800 | 0.822091 | 2.850736e-53 | -8.615850e-47 |
| Msa0454910 | Msa0732710 | 0.802089 | 6.617859e-49 | -8.615850e-47 |
| Msa0454910 | Msa0733290 | 0.843658 | 1.223939e-58 | -8.615850e-47 |
| Msa0454910 | Msa0735080 | 0.836604 | 8.489670e-57 | -8.615850e-47 |
| Msa0454910 | Msa0743810 | 0.880138 | 7.024557e-70 | -8.615850e-47 |
| Msa0454910 | Msa0745060 | 0.880969 | 3.540508e-70 | -8.615850e-47 |
| Msa0454910 | Msa0767720 | 0.853242 | 2.719116e-61 | -8.615850e-47 |
| Msa0454910 | Msa0777870 | 0.818110 | 2.325411e-52 | -8.615850e-47 |
| Msa0454910 | Msa0783160 | 0.886926 | 2.234266e-72 | -8.615850e-47 |
| Msa0454910 | Msa0787600 | 0.870699 | 1.198003e-66 | -8.615850e-47 |
| Msa0454910 | Msa0808010 | 0.825971 | 3.502944e-54 | -8.615850e-47 |
| Msa0454910 | Msa0808020 | 0.819626 | 1.052413e-52 | -8.615850e-47 |
| Msa0454910 | Msa0811270 | 0.806655 | 7.403903e-50 | -8.615850e-47 |
| Msa0454910 | Msa0824600 | 0.816949 | 4.248010e-52 | -8.615850e-47 |
| Msa0454910 | Msa0825860 | 0.886369 | 3.633114e-72 | -8.615850e-47 |
| Msa0454910 | Msa0833290 | 0.813074 | 3.076620e-51 | -8.615850e-47 |
| Msa0454910 | Msa0846210 | 0.823838 | 1.116577e-53 | -8.615850e-47 |
| Msa0454910 | Msa0846330 | 0.836900 | 7.136001e-57 | -8.615850e-47 |
| Msa0454910 | Msa0846350 | 0.846233 | 2.470133e-59 | -8.615850e-47 |
| Msa0454910 | Msa0854980 | 0.844595 | 6.859774e-59 | -8.615850e-47 |
| Msa0454910 | Msa0865320 | 0.874212 | 8.055076e-68 | -8.615850e-47 |
| Msa0454910 | Msa0872230 | 0.817294 | 3.552848e-52 | -8.615850e-47 |
| Msa0454910 | Msa0885280 | 0.811510 | 6.752713e-51 | -8.615850e-47 |
| Msa0454910 | Msa0885290 | 0.863472 | 2.429880e-64 | -8.615850e-47 |
| Msa0454910 | Msa0887920 | 0.812201 | 4.776423e-51 | -8.615850e-47 |
| Msa0454910 | Msa0888370 | 0.833325 | 5.690855e-56 | -8.615850e-47 |
| Msa0454910 | Msa0896080 | 0.810349 | 1.204705e-50 | -8.615850e-47 |
| Msa0454910 | Msa0899600 | 0.804343 | 2.260761e-49 | -8.615850e-47 |
| Msa0454910 | Msa0907260 | 0.802467 | 5.533394e-49 | -8.615850e-47 |
| Msa0454910 | Msa0956270 | 0.802598 | 5.200504e-49 | -8.615850e-47 |
| Msa0454910 | Msa0957860 | 0.827325 | 1.665428e-54 | -8.615850e-47 |
| Msa0454910 | Msa0957960 | 0.827589 | 1.439171e-54 | -8.615850e-47 |
| Msa0454910 | Msa0979410 | 0.803649 | 3.151858e-49 | -8.615850e-47 |
| Msa0454910 | Msa0981370 | 0.815960 | 7.073754e-52 | -8.615850e-47 |
| Msa0454910 | Msa0989060 | 0.851280 | 9.835425e-61 | -8.615850e-47 |
| Msa0454910 | Msa1016280 | 0.863098 | 3.172076e-64 | -8.615850e-47 |
| Msa0454910 | Msa1024240 | 0.855201 | 7.392500e-62 | -8.615850e-47 |
| Msa0454910 | Msa1025360 | 0.877906 | 4.313809e-69 | -8.615850e-47 |
| Msa0454910 | Msa1025370 | 0.890137 | 1.292838e-73 | -8.615850e-47 |
| Msa0454910 | Msa1042430 | 0.822628 | 2.139886e-53 | -8.615850e-47 |
| Msa0454910 | Msa1044830 | 0.883397 | 4.645894e-71 | -8.615850e-47 |
| Msa0454910 | Msa1044840 | 0.880434 | 5.506871e-70 | -8.615850e-47 |
| Msa0454910 | Msa1054790 | 0.800284 | 1.548906e-48 | -8.615850e-47 |
| Msa0454910 | Msa1060840 | 0.812197 | 4.785596e-51 | -8.615850e-47 |
| Msa0454910 | Msa1092990 | 0.863424 | 2.515131e-64 | -8.615850e-47 |
| Msa0454910 | Msa1100980 | 0.899372 | 2.115738e-77 | -8.615850e-47 |
| Msa0454910 | Msa1109440 | 0.844047 | 9.625638e-59 | -8.615850e-47 |
| Msa0454910 | Msa1121200 | 0.839859 | 1.231295e-57 | -8.615850e-47 |
| Msa0454910 | Msa1135740 | 0.878963 | 1.835376e-69 | -8.615850e-47 |
| Msa0454910 | Msa1136090 | 0.813339 | 2.691684e-51 | -8.615850e-47 |
| Msa0454910 | Msa1146110 | 0.849470 | 3.168273e-60 | -8.615850e-47 |
| Msa0454910 | Msa1149360 | 0.803643 | 3.160990e-49 | -8.615850e-47 |
| Msa0454910 | Msa1150370 | 0.833879 | 4.137548e-56 | -8.615850e-47 |
| Msa0454910 | Msa1160670 | 0.804309 | 2.297970e-49 | -8.615850e-47 |
| Msa0454910 | Msa1173920 | 0.836410 | 9.515170e-57 | -8.615850e-47 |
| Msa0454910 | Msa1178340 | 0.812414 | 4.291649e-51 | -8.615850e-47 |
| Msa0454910 | Msa1182090 | 0.814183 | 1.754231e-51 | -8.615850e-47 |
| Msa0454910 | Msa1187940 | 0.856691 | 2.710659e-62 | -8.615850e-47 |
| Msa0454910 | Msa1187950 | 0.866118 | 3.600678e-65 | -8.615850e-47 |
| Msa0454910 | Msa1192640 | 0.862386 | 5.259225e-64 | -8.615850e-47 |
| Msa0454910 | Msa1230430 | 0.815590 | 8.549671e-52 | -8.615850e-47 |
| Msa0454910 | Msa1246880 | 0.838394 | 2.952106e-57 | -8.615850e-47 |
| Msa0454910 | Msa1260100 | 0.811592 | 6.480525e-51 | -8.615850e-47 |
| Msa0454910 | Msa1269670 | 0.871768 | 5.313953e-67 | -8.615850e-47 |
| Msa0454910 | Msa1270230 | 0.870735 | 1.165502e-66 | -8.615850e-47 |
| Msa0454910 | Msa1270240 | 0.880660 | 4.570373e-70 | -8.615850e-47 |
| Msa0454910 | Msa1270270 | 0.870707 | 1.190704e-66 | -8.615850e-47 |
| Msa0454910 | Msa1273230 | 0.820890 | 5.398862e-53 | -8.615850e-47 |
| Msa0454910 | Msa1283330 | 0.883148 | 5.733109e-71 | -8.615850e-47 |
| Msa0454910 | Msa1285930 | 0.882326 | 1.143955e-70 | -8.615850e-47 |
| Msa0454910 | Msa1287800 | 0.873132 | 1.863806e-67 | -8.615850e-47 |
| Msa0454910 | Msa1287810 | 0.882907 | 7.025212e-71 | -8.615850e-47 |
| Msa0454910 | Msa1287820 | 0.824529 | 7.685239e-54 | -8.615850e-47 |
| Msa0454910 | Msa1287830 | 0.823786 | 1.148447e-53 | -8.615850e-47 |
| Msa0454910 | Msa1289430 | 0.838618 | 2.583543e-57 | -8.615850e-47 |
| Msa0454910 | Msa1297210 | 0.842887 | 1.964824e-58 | -8.615850e-47 |
| Msa0454910 | Msa1305480 | 0.802477 | 5.506446e-49 | -8.615850e-47 |
| Msa0454910 | Msa1307890 | 0.820749 | 5.817539e-53 | -8.615850e-47 |
| Msa0454910 | Msa1310120 | 0.813957 | 1.967500e-51 | -8.615850e-47 |
| Msa0454910 | Msa1314280 | 0.809006 | 2.341953e-50 | -8.615850e-47 |
| Msa0454910 | Msa1320300 | 0.836476 | 9.150562e-57 | -8.615850e-47 |
| Msa0454910 | Msa1321560 | 0.800260 | 1.566392e-48 | -8.615850e-47 |
| Msa0454910 | Msa1340590 | 0.840332 | 9.266427e-58 | -8.615850e-47 |
| Msa0454910 | Msa1342200 | 0.846086 | 2.709134e-59 | -8.615850e-47 |
| Msa0454910 | Msa1370210 | 0.805763 | 1.140940e-49 | -8.615850e-47 |
| Msa0454910 | Msa1382690 | 0.801425 | 9.059198e-49 | -8.615850e-47 |
| Msa0454910 | Msa1386330 | 0.831447 | 1.661010e-55 | -8.615850e-47 |
| Msa0454910 | Msa1397580 | 0.831742 | 1.404640e-55 | -8.615850e-47 |
| Msa0454910 | Msa1404000 | 0.865991 | 3.949515e-65 | -8.615850e-47 |
| Msa0454910 | Msa1408780 | 0.811310 | 7.463731e-51 | -8.615850e-47 |
| Msa0454910 | Msa1415310 | 0.871541 | 6.320419e-67 | -8.615850e-47 |
| Msa0454910 | Msa1422180 | 0.860159 | 2.508795e-63 | -8.615850e-47 |
| Msa0454910 | Msa1433120 | 0.839773 | 1.296376e-57 | -8.615850e-47 |
| Msa0454910 | Msa1451190 | 0.841810 | 3.790459e-58 | -8.615850e-47 |
| Msa0256440 | Msa0454910 | 0.802854 | 4.603172e-49 | -8.615850e-47 |
| Msa0267000 | Msa0454910 | 0.880995 | 3.465645e-70 | -8.615850e-47 |
| Msa0267010 | Msa0454910 | 0.873115 | 1.887580e-67 | -8.615850e-47 |
| Msa0270520 | Msa0454910 | 0.825848 | 3.747516e-54 | -8.615850e-47 |
| Msa0304170 | Msa0454910 | 0.809959 | 1.462405e-50 | -8.615850e-47 |
| Msa0306460 | Msa0454910 | 0.810463 | 1.138155e-50 | -8.615850e-47 |
| Msa0313760 | Msa0454910 | 0.816744 | 4.722330e-52 | -8.615850e-47 |
| Msa0342240 | Msa0454910 | 0.858016 | 1.099948e-62 | -8.615850e-47 |
| Msa0350060 | Msa0454910 | 0.803969 | 2.704715e-49 | -8.615850e-47 |
| Msa0360510 | Msa0454910 | 0.835838 | 1.329317e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454910 | MtrunA17_Chr1g0202021 | 64.717 | 530 | 139 | 8 | 5 | 496 | 699 | 1218 | 0.0 | 630 |
| Msa0454910 | MtrunA17_Chr1g0201991 | 62.382 | 529 | 153 | 6 | 5 | 496 | 184 | 703 | 0.0 | 625 |
| Msa0454910 | MtrunA17_Chr4g0000221 | 58.259 | 448 | 146 | 13 | 19 | 442 | 5 | 435 | 3.22e-152 | 442 |
| Msa0454910 | MtrunA17_Chr4g0000991 | 59.897 | 389 | 129 | 7 | 3 | 374 | 15 | 393 | 1.19e-150 | 436 |
| Msa0454910 | MtrunA17_Chr7g0264901 | 47.352 | 321 | 142 | 4 | 53 | 346 | 38 | 358 | 3.69e-84 | 265 |
| Msa0454910 | MtrunA17_Chr4g0004141 | 49.767 | 215 | 92 | 4 | 39 | 244 | 1 | 208 | 2.03e-60 | 204 |
| Msa0454910 | MtrunA17_Chr4g0004141 | 44.872 | 156 | 56 | 3 | 330 | 485 | 212 | 337 | 4.96e-27 | 113 |
| Msa0454910 | MtrunA17_Chr7g0264471 | 42.697 | 267 | 126 | 6 | 53 | 294 | 57 | 321 | 1.58e-55 | 189 |
| Msa0454910 | MtrunA17_Chr7g0263861 | 48.485 | 132 | 61 | 1 | 354 | 485 | 119 | 243 | 5.46e-28 | 112 |
| Msa0454910 | MtrunA17_Chr4g0038951 | 81.481 | 54 | 4 | 1 | 252 | 305 | 33 | 80 | 8.06e-22 | 89.7 |
| Msa0454910 | MtrunA17_Chr4g0038951 | 47.619 | 63 | 30 | 1 | 149 | 211 | 1 | 60 | 1.17e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0454910 | AT1G76810.1 | 55.303 | 528 | 192 | 6 | 4 | 496 | 654 | 1172 | 0.0 | 542 |
| Msa0454910 | AT1G76720.1 | 56.639 | 482 | 155 | 7 | 50 | 496 | 624 | 1086 | 3.39e-167 | 504 |
| Msa0454910 | AT1G76720.2 | 56.723 | 476 | 154 | 6 | 54 | 496 | 663 | 1119 | 1.71e-166 | 503 |
| Msa0454910 | AT2G27700.1 | 54.393 | 478 | 174 | 8 | 19 | 463 | 11 | 477 | 7.96e-164 | 473 |
| Msa0454910 | AT1G21160.1 | 51.044 | 527 | 211 | 7 | 4 | 496 | 451 | 964 | 1.35e-163 | 492 |
| Msa0454910 | AT2G27700.2 | 54.280 | 479 | 174 | 9 | 19 | 463 | 11 | 478 | 6.27e-162 | 468 |
Find 104 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACTTGAACATGCTATTTC+TGG | 0.142171 | 3_3:+46831638 | Msa0454910:CDS |
| TCATCTATTTCGTCAATTTA+AGG | 0.162437 | 3_3:+46832024 | Msa0454910:CDS |
| ATGTTGTGATATTGCAATTT+TGG | 0.224570 | 3_3:+46829951 | Msa0454910:CDS |
| ATTTCTCAATCATGGTCTTT+TGG | 0.234728 | 3_3:-46830716 | None:intergenic |
| CTCAGCACCTTGTTGAATAT+TGG | 0.241938 | 3_3:-46829854 | None:intergenic |
| GCTTCACGAATTGGAGTATT+AGG | 0.280188 | 3_3:-46830196 | None:intergenic |
| CATTCAATAACTCCCATTCT+TGG | 0.303659 | 3_3:+46829914 | Msa0454910:CDS |
| GGATTACAAGGACGACATTA+AGG | 0.326871 | 3_3:+46832045 | Msa0454910:CDS |
| GGCTTACATGGACTACATTA+AGG | 0.341508 | 3_3:+46832066 | Msa0454910:CDS |
| GGTGATCAAATAGTTGTATC+TGG | 0.345405 | 3_3:+46830945 | Msa0454910:CDS |
| TTTACACAAAGTTCCTTCAT+TGG | 0.348516 | 3_3:-46831091 | None:intergenic |
| ATTCAATAACTCCCATTCTT+GGG | 0.354056 | 3_3:+46829915 | Msa0454910:CDS |
| TTCATCACTGCTTCACGAAT+TGG | 0.360062 | 3_3:-46830205 | None:intergenic |
| TCAAGCTGACTTTCATATAA+AGG | 0.365373 | 3_3:+46830243 | Msa0454910:CDS |
| TGTTATTTCTGTTGTCTCAA+TGG | 0.372537 | 3_3:+46830691 | Msa0454910:CDS |
| TGCTTTCTATCTTCAGCCAC+AGG | 0.379616 | 3_3:-46829679 | None:intergenic |
| TATTGCTCAGTTCAAGTCTC+AGG | 0.396407 | 3_3:+46830369 | Msa0454910:CDS |
| GCTCGAATTGTGGTAACAAT+TGG | 0.397760 | 3_3:-46831052 | None:intergenic |
| TTACCTAGCATGTAGCAAAT+TGG | 0.398483 | 3_3:-46829787 | None:intergenic |
| CTAACAGGAATATTCACTTC+TGG | 0.399897 | 3_3:-46831830 | None:intergenic |
| GGTGAAGCCTGACGATGATT+TGG | 0.402494 | 3_3:+46831676 | Msa0454910:CDS |
| ACAGGAGTATGCTACTATAT+TGG | 0.407838 | 3_3:+46831919 | Msa0454910:CDS |
| TCATCATCACTCCGCTTAGA+AGG | 0.409417 | 3_3:-46829757 | None:intergenic |
| TTGTGCCAACAAGTGCAATA+AGG | 0.411211 | 3_3:+46830446 | Msa0454910:CDS |
| CTGCAAGTTGGCTAGCTTCA+AGG | 0.412273 | 3_3:-46831961 | None:intergenic |
| TGCAATGCTTGGAAAGAAAC+AGG | 0.412921 | 3_3:+46831901 | Msa0454910:CDS |
| AGCATCTACACCTAGCTCAT+TGG | 0.414459 | 3_3:+46831781 | Msa0454910:CDS |
| TATTATTTAAACAAAACATT+GGG | 0.429917 | 3_3:+46830409 | Msa0454910:CDS |
| GTCCTCATCCACAACAACTT+TGG | 0.432312 | 3_3:-46829704 | None:intergenic |
| AATGGGAGTTATTGAATGAT+TGG | 0.434627 | 3_3:-46829909 | None:intergenic |
| ACATATTCCAAATCATCGTC+AGG | 0.436232 | 3_3:-46831683 | None:intergenic |
| TTTCATCATTGCCTTGACTA+AGG | 0.437077 | 3_3:+46830047 | Msa0454910:CDS |
| AGTTACCTTATTGCACTTGT+TGG | 0.437745 | 3_3:-46830451 | None:intergenic |
| GACAACAGAAATAACATGTC+CGG | 0.452241 | 3_3:-46830684 | None:intergenic |
| TAAGAGTTTATGATTCAAAT+CGG | 0.453619 | 3_3:-46832148 | None:intergenic |
| CTTTCATATAAAGGTCTTTG+AGG | 0.455230 | 3_3:+46830252 | Msa0454910:CDS |
| TTGAGCAAGTCTCTAGTTTG+CGG | 0.457372 | 3_3:-46830000 | None:intergenic |
| TTGCAAGTCAAGGTTATTGA+AGG | 0.478444 | 3_3:+46830873 | Msa0454910:CDS |
| GTACGTAAATTTCTCAATCA+TGG | 0.480088 | 3_3:-46830724 | None:intergenic |
| GTTAATGGTGTTCTTCATGA+AGG | 0.485509 | 3_3:+46830924 | Msa0454910:CDS |
| AAGCAGTGATGAAGCAGAAT+CGG | 0.486153 | 3_3:+46830215 | Msa0454910:CDS |
| GTCAAGGTTATTGAAGGCTA+TGG | 0.489864 | 3_3:+46830879 | Msa0454910:CDS |
| TTCTGGCGCTAGTTTATATG+TGG | 0.492196 | 3_3:+46831655 | Msa0454910:CDS |
| GGCCAAAGTTGTTGTGGATG+AGG | 0.499049 | 3_3:+46829702 | Msa0454910:CDS |
| ATTTGATATTTCAGTGGTGA+AGG | 0.501007 | 3_3:+46830657 | Msa0454910:intron |
| ATGAGCTAGGTGTAGATGCT+TGG | 0.503356 | 3_3:-46831778 | None:intergenic |
| ATCACATCCTTTGTATGCAC+GGG | 0.503820 | 3_3:-46831869 | None:intergenic |
| AATAGTTGTATCTGGAATGC+AGG | 0.504285 | 3_3:+46830953 | Msa0454910:CDS |
| AATGAAGGAACTTTGTGTAA+AGG | 0.514687 | 3_3:+46831093 | Msa0454910:CDS |
| TTCAATAACTCCCATTCTTG+GGG | 0.516062 | 3_3:+46829916 | Msa0454910:CDS |
| TAGAGCTGAACCCCAAGAAT+GGG | 0.517077 | 3_3:-46829926 | None:intergenic |
| CAAAGTTCCTTCATTGGATG+AGG | 0.517848 | 3_3:-46831085 | None:intergenic |
| TTATTATTTAAACAAAACAT+TGG | 0.518076 | 3_3:+46830408 | Msa0454910:CDS |
| TCGAATACGATCTAGAAGCT+TGG | 0.522606 | 3_3:-46829827 | None:intergenic |
| TCGTCAATTTAAGGATTACA+AGG | 0.525897 | 3_3:+46832033 | Msa0454910:CDS |
| CACCTAGGTCATCTGCAAGT+TGG | 0.529239 | 3_3:-46831973 | None:intergenic |
| ATAGAGCTGAACCCCAAGAA+TGG | 0.530896 | 3_3:-46829927 | None:intergenic |
| GGACGACATTAAGGCTTACA+TGG | 0.538382 | 3_3:+46832054 | Msa0454910:CDS |
| ATGAAGGCAGGTGCAATGCT+TGG | 0.538510 | 3_3:+46831890 | Msa0454910:CDS |
| CATCACATCCTTTGTATGCA+CGG | 0.539170 | 3_3:-46831870 | None:intergenic |
| TTACCAATTTGCTACATGCT+AGG | 0.543273 | 3_3:+46829784 | Msa0454910:CDS |
| AAGGCCCAGCAGACATGAGT+TGG | 0.543712 | 3_3:-46829738 | None:intergenic |
| ATTGACGCCTCATCCAATGA+AGG | 0.546272 | 3_3:+46831078 | Msa0454910:CDS |
| ACAAAGGATGTGATGAAGGC+AGG | 0.546463 | 3_3:+46831878 | Msa0454910:CDS |
| ATGTGGAGTTATTCTTGAGA+AGG | 0.546575 | 3_3:+46831726 | Msa0454910:CDS |
| TGCAAGTTGGCTAGCTTCAA+GGG | 0.548771 | 3_3:-46831960 | None:intergenic |
| GCTTTCTATCTTCAGCCACA+GGG | 0.549214 | 3_3:-46829678 | None:intergenic |
| GGGCATCAAGATCATTGCCC+AGG | 0.550099 | 3_3:+46831493 | Msa0454910:CDS |
| AAAACCAACTCATGTCTGCT+GGG | 0.552708 | 3_3:+46829734 | Msa0454910:CDS |
| AAAAGCAGCCTTGGAAGATG+TGG | 0.555021 | 3_3:+46831709 | Msa0454910:CDS |
| ATTGCTCAGTTCAAGTCTCA+GGG | 0.557151 | 3_3:+46830370 | Msa0454910:CDS |
| GCATACAAAGGATGTGATGA+AGG | 0.560996 | 3_3:+46831874 | Msa0454910:CDS |
| TACGTACAGTGAAGACGTGC+AGG | 0.564272 | 3_3:+46830740 | Msa0454910:CDS |
| TCTATCTTCAGCCACAGGGT+TGG | 0.566996 | 3_3:-46829674 | None:intergenic |
| AGAGAGAAAATCTGTTCATG+AGG | 0.568427 | 3_3:+46832096 | Msa0454910:CDS |
| ACAACAGAAATAACATGTCC+GGG | 0.568971 | 3_3:-46830683 | None:intergenic |
| TATAGGTCCCGTGCATACAA+AGG | 0.570154 | 3_3:+46831862 | Msa0454910:CDS |
| CAAAACAATCAAAGCTGTGA+GGG | 0.570460 | 3_3:+46831472 | Msa0454910:CDS |
| AAAGCAGGCCAAAGTTGTTG+TGG | 0.575307 | 3_3:+46829696 | Msa0454910:CDS |
| TTTCAGTGGTGAAGGAATCC+CGG | 0.575451 | 3_3:+46830665 | Msa0454910:intron |
| TGGAATGCTTACCTTAGTCA+AGG | 0.577623 | 3_3:-46830058 | None:intergenic |
| AGTAATGCTTCCAATGAGCT+AGG | 0.580423 | 3_3:-46831791 | None:intergenic |
| AGGATCGACAGCAGTGGTGA+CGG | 0.591853 | 3_3:+46831746 | Msa0454910:CDS |
| GGGAGTTATTGAATGATTGG+TGG | 0.598923 | 3_3:-46829906 | None:intergenic |
| GAATAACTCCACATCTTCCA+AGG | 0.600132 | 3_3:-46831717 | None:intergenic |
| TGTGGCTGAAGATAGAAAGC+AGG | 0.600172 | 3_3:+46829681 | Msa0454910:CDS |
| CAATATTCAACAAGGTGCTG+AGG | 0.616143 | 3_3:+46829855 | Msa0454910:CDS |
| CGAGAAACCAATATTCAACA+AGG | 0.617328 | 3_3:+46829847 | Msa0454910:CDS |
| TTGGTTGTTAACATTATGCG+TGG | 0.622797 | 3_3:+46829970 | Msa0454910:CDS |
| GAGGCTCCGGTCATGACGAA+AGG | 0.627668 | 3_3:+46829530 | None:intergenic |
| CGTCAATAAAGCTCGAATTG+TGG | 0.631263 | 3_3:-46831062 | None:intergenic |
| ATGCTAGGTAATTTCTACAC+TGG | 0.643265 | 3_3:+46829799 | Msa0454910:CDS |
| TTGAGAAGGATCGACAGCAG+TGG | 0.656911 | 3_3:+46831740 | Msa0454910:CDS |
| AGCCAACTTGCAGATGACCT+AGG | 0.663504 | 3_3:+46831971 | Msa0454910:CDS |
| AAATAGATGATCAATGACAT+CGG | 0.665923 | 3_3:-46832011 | None:intergenic |
| AAAACAATCAAAGCTGTGAG+GGG | 0.666926 | 3_3:+46831473 | Msa0454910:CDS |
| AGGTGGATATGATTCCTCGC+TGG | 0.668513 | 3_3:+46830164 | Msa0454910:intron |
| TGTCTGCTGGGCCTTCTAAG+CGG | 0.669760 | 3_3:+46829746 | Msa0454910:CDS |
| TTAGGACATGCTTTCCAGCG+AGG | 0.676372 | 3_3:-46830178 | None:intergenic |
| TTACATGGACTACATTAAGG+AGG | 0.688289 | 3_3:+46832069 | Msa0454910:CDS |
| ACAAAACAATCAAAGCTGTG+AGG | 0.694973 | 3_3:+46831471 | Msa0454910:CDS |
| AGATGCTATTTCCAACCCTG+TGG | 0.697316 | 3_3:+46829663 | Msa0454910:CDS |
| TTGCTCAGTTCAAGTCTCAG+GGG | 0.697871 | 3_3:+46830371 | Msa0454910:CDS |
| TAGATGATCAATGACATCGG+AGG | 0.705929 | 3_3:-46832008 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTTAAACAAAACAT+TGG | + | chr3_3:46830408-46830427 | Msa0454910:CDS | 10.0% |
| !! | TATTATTTAAACAAAACATT+GGG | + | chr3_3:46830409-46830428 | Msa0454910:CDS | 10.0% |
| !! | TTAAATATTATGTGAAAATA+AGG | - | chr3_3:46830770-46830789 | None:intergenic | 10.0% |
| !! | ACTAATAAACTTTATAATTT+AGG | + | chr3_3:46831027-46831046 | Msa0454910:intron | 10.0% |
| !! | CTAATAAACTTTATAATTTA+GGG | + | chr3_3:46831028-46831047 | Msa0454910:intron | 10.0% |
| !! | TTTAATATTTGATATTTCAG+TGG | + | chr3_3:46830651-46830670 | Msa0454910:intron | 15.0% |
| !! | AATAAAATAATATCAACCTA+GGG | - | chr3_3:46831234-46831253 | None:intergenic | 15.0% |
| !!! | TTGATATTATTTTATTGATC+CGG | + | chr3_3:46831238-46831257 | Msa0454910:intron | 15.0% |
| !! | AAAATCAAGAAAAACATTAT+TGG | - | chr3_3:46831562-46831581 | None:intergenic | 15.0% |
| !!! | TTGTTGTTTAACATCAATAA+TGG | - | chr3_3:46829589-46829608 | None:intergenic | 20.0% |
| !!! | AAAAAACACATAATGGAATT+TGG | - | chr3_3:46830103-46830122 | None:intergenic | 20.0% |
| !!! | ATAAATGATTTTGAATGGTA+GGG | - | chr3_3:46830511-46830530 | None:intergenic | 20.0% |
| !!! | AATAAATGATTTTGAATGGT+AGG | - | chr3_3:46830512-46830531 | None:intergenic | 20.0% |
| !! | ACCATTCAAAATCATTTATT+TGG | + | chr3_3:46830512-46830531 | Msa0454910:intron | 20.0% |
| !! | CCATTCAAAATCATTTATTT+GGG | + | chr3_3:46830513-46830532 | Msa0454910:intron | 20.0% |
| !! | CATTCAAAATCATTTATTTG+GGG | + | chr3_3:46830514-46830533 | Msa0454910:intron | 20.0% |
| !!! | AGATTTAACTGTTATTTAAC+TGG | + | chr3_3:46830831-46830850 | Msa0454910:intron | 20.0% |
| !!! | ATTGATGTTGTTTTAGTTAA+TGG | + | chr3_3:46830909-46830928 | Msa0454910:CDS | 20.0% |
| !! | CAATAAAATAATATCAACCT+AGG | - | chr3_3:46831235-46831254 | None:intergenic | 20.0% |
| ! | GGTAATGCTAAATCTAAAAA+AGG | + | chr3_3:46829551-46829570 | Msa0454910:CDS | 25.0% |
| ! | TTGTTTAACATCAATAATGG+AGG | - | chr3_3:46829586-46829605 | None:intergenic | 25.0% |
| !! | ATGTTGTGATATTGCAATTT+TGG | + | chr3_3:46829951-46829970 | Msa0454910:CDS | 25.0% |
| !!! | TTCCATTATGTGTTTTTTAC+AGG | + | chr3_3:46830105-46830124 | Msa0454910:intron | 25.0% |
| ! | AACCTGTAAAAAACACATAA+TGG | - | chr3_3:46830110-46830129 | None:intergenic | 25.0% |
| !! | TTTTCTTTACTTCTAAGTTG+TGG | + | chr3_3:46830291-46830310 | Msa0454910:intron | 25.0% |
| ! | TAAACAGAGAAAAATTAGCA+TGG | - | chr3_3:46830340-46830359 | None:intergenic | 25.0% |
| !! | TAAATGATTTTGAATGGTAG+GGG | - | chr3_3:46830510-46830529 | None:intergenic | 25.0% |
| !! | CCCAAATAAATGATTTTGAA+TGG | - | chr3_3:46830516-46830535 | None:intergenic | 25.0% |
| !! | TTTAACTGTTATTTAACTGG+CGG | + | chr3_3:46830834-46830853 | Msa0454910:intron | 25.0% |
| ! | TTATAAAGTTTATTAGTCCG+AGG | - | chr3_3:46831024-46831043 | None:intergenic | 25.0% |
| !!! | ATATCAAATTTGTTGCTTGA+TGG | + | chr3_3:46831153-46831172 | Msa0454910:intron | 25.0% |
| ! | AAATAGATGATCAATGACAT+CGG | - | chr3_3:46832014-46832033 | None:intergenic | 25.0% |
| ! | TCATCTATTTCGTCAATTTA+AGG | + | chr3_3:46832024-46832043 | Msa0454910:CDS | 25.0% |
| AATGGGAGTTATTGAATGAT+TGG | - | chr3_3:46829912-46829931 | None:intergenic | 30.0% | |
| ATTCAATAACTCCCATTCTT+GGG | + | chr3_3:46829915-46829934 | Msa0454910:CDS | 30.0% | |
| ! | TCAAGCTGACTTTCATATAA+AGG | + | chr3_3:46830243-46830262 | Msa0454910:CDS | 30.0% |
| CTTTCATATAAAGGTCTTTG+AGG | + | chr3_3:46830252-46830271 | Msa0454910:CDS | 30.0% | |
| ! | CAAAATCATTTATTTGGGGT+TGG | + | chr3_3:46830518-46830537 | Msa0454910:intron | 30.0% |
| TTGGTAAATATCACAATAGC+TGG | + | chr3_3:46830537-46830556 | Msa0454910:intron | 30.0% | |
| !! | AATATCACAATAGCTGGTTT+TGG | + | chr3_3:46830543-46830562 | Msa0454910:intron | 30.0% |
| AAATCTGCTTAATTCTTGGT+CGG | + | chr3_3:46830611-46830630 | Msa0454910:intron | 30.0% | |
| ATTTGATATTTCAGTGGTGA+AGG | + | chr3_3:46830657-46830676 | Msa0454910:intron | 30.0% | |
| !! | TGTTATTTCTGTTGTCTCAA+TGG | + | chr3_3:46830691-46830710 | Msa0454910:CDS | 30.0% |
| ! | TTTCTCAATCATGGTCTTTT+GGG | - | chr3_3:46830718-46830737 | None:intergenic | 30.0% |
| ! | ATTTCTCAATCATGGTCTTT+TGG | - | chr3_3:46830719-46830738 | None:intergenic | 30.0% |
| GTACGTAAATTTCTCAATCA+TGG | - | chr3_3:46830727-46830746 | None:intergenic | 30.0% | |
| ! | TTAACTGTTATTTAACTGGC+GGG | + | chr3_3:46830835-46830854 | Msa0454910:intron | 30.0% |
| TTAATACTTACTTTCTGCCT+CGG | + | chr3_3:46831004-46831023 | Msa0454910:intron | 30.0% | |
| TTTACACAAAGTTCCTTCAT+TGG | - | chr3_3:46831094-46831113 | None:intergenic | 30.0% | |
| AATGAAGGAACTTTGTGTAA+AGG | + | chr3_3:46831093-46831112 | Msa0454910:CDS | 30.0% | |
| ATGGCAAAACTATATAACCT+TGG | + | chr3_3:46831172-46831191 | Msa0454910:intron | 30.0% | |
| CCAAACAATACTTAAGTTAC+CGG | - | chr3_3:46831260-46831279 | None:intergenic | 30.0% | |
| ! | CGGTAACTTAAGTATTGTTT+GGG | + | chr3_3:46831258-46831277 | Msa0454910:intron | 30.0% |
| ! | TAACTTAAGTATTGTTTGGG+TGG | + | chr3_3:46831261-46831280 | Msa0454910:intron | 30.0% |
| ! | AACTTAAGTATTGTTTGGGT+GGG | + | chr3_3:46831262-46831281 | Msa0454910:intron | 30.0% |
| ATATTCGTAACATGAAGCTA+AGG | + | chr3_3:46831351-46831370 | Msa0454910:intron | 30.0% | |
| AAGTAATGTCGTCTAATTTC+AGG | + | chr3_3:46831433-46831452 | Msa0454910:intron | 30.0% | |
| AGTAATGTCGTCTAATTTCA+GGG | + | chr3_3:46831434-46831453 | Msa0454910:intron | 30.0% | |
| ATATGTTAAAAAAGCAGCCT+TGG | + | chr3_3:46831700-46831719 | Msa0454910:CDS | 30.0% | |
| !!! | CCTATATTTTTAGCACTAAC+AGG | - | chr3_3:46831848-46831867 | None:intergenic | 30.0% |
| CCTGTTAGTGCTAAAAATAT+AGG | + | chr3_3:46831845-46831864 | Msa0454910:CDS | 30.0% | |
| TCGTCAATTTAAGGATTACA+AGG | + | chr3_3:46832033-46832052 | Msa0454910:CDS | 30.0% | |
| !!! | GAATTTTAACTACCATGCAT+GGG | - | chr3_3:46832129-46832148 | None:intergenic | 30.0% |
| !! | TTACCAATTTGCTACATGCT+AGG | + | chr3_3:46829784-46829803 | Msa0454910:CDS | 35.0% |
| TTACCTAGCATGTAGCAAAT+TGG | - | chr3_3:46829790-46829809 | None:intergenic | 35.0% | |
| ATGCTAGGTAATTTCTACAC+TGG | + | chr3_3:46829799-46829818 | Msa0454910:CDS | 35.0% | |
| CGAGAAACCAATATTCAACA+AGG | + | chr3_3:46829847-46829866 | Msa0454910:CDS | 35.0% | |
| CATTCAATAACTCCCATTCT+TGG | + | chr3_3:46829914-46829933 | Msa0454910:CDS | 35.0% | |
| TTCAATAACTCCCATTCTTG+GGG | + | chr3_3:46829916-46829935 | Msa0454910:CDS | 35.0% | |
| TTGGTTGTTAACATTATGCG+TGG | + | chr3_3:46829970-46829989 | Msa0454910:CDS | 35.0% | |
| TTTCATCATTGCCTTGACTA+AGG | + | chr3_3:46830047-46830066 | Msa0454910:CDS | 35.0% | |
| AGAACAGTGTGACAAAATTG+AGG | - | chr3_3:46830133-46830152 | None:intergenic | 35.0% | |
| AGTTACCTTATTGCACTTGT+TGG | - | chr3_3:46830454-46830473 | None:intergenic | 35.0% | |
| TTCACGTAACGCTAAAGAAT+GGG | - | chr3_3:46830593-46830612 | None:intergenic | 35.0% | |
| TTTCACGTAACGCTAAAGAA+TGG | - | chr3_3:46830594-46830613 | None:intergenic | 35.0% | |
| CGTGAAATCTGCTTAATTCT+TGG | + | chr3_3:46830607-46830626 | Msa0454910:intron | 35.0% | |
| ACAACAGAAATAACATGTCC+GGG | - | chr3_3:46830686-46830705 | None:intergenic | 35.0% | |
| GACAACAGAAATAACATGTC+CGG | - | chr3_3:46830687-46830706 | None:intergenic | 35.0% | |
| TTGCAAGTCAAGGTTATTGA+AGG | + | chr3_3:46830873-46830892 | Msa0454910:CDS | 35.0% | |
| GTTAATGGTGTTCTTCATGA+AGG | + | chr3_3:46830924-46830943 | Msa0454910:CDS | 35.0% | |
| GGTGATCAAATAGTTGTATC+TGG | + | chr3_3:46830945-46830964 | Msa0454910:CDS | 35.0% | |
| ! | AATAGTTGTATCTGGAATGC+AGG | + | chr3_3:46830953-46830972 | Msa0454910:CDS | 35.0% |
| ! | CCGGTAACTTAAGTATTGTT+TGG | + | chr3_3:46831257-46831276 | Msa0454910:intron | 35.0% |
| AGGCATTTAGAAACTCGAAT+CGG | + | chr3_3:46831289-46831308 | Msa0454910:intron | 35.0% | |
| !! | ATGATAAGTGTTGGAAACGT+AGG | + | chr3_3:46831317-46831336 | Msa0454910:intron | 35.0% |
| ATAGCACGTAAAGTTGTTCA+TGG | + | chr3_3:46831383-46831402 | Msa0454910:intron | 35.0% | |
| TTCATATTAGCATGTCTTCC+AGG | + | chr3_3:46831406-46831425 | Msa0454910:intron | 35.0% | |
| ACAAAACAATCAAAGCTGTG+AGG | + | chr3_3:46831471-46831490 | Msa0454910:CDS | 35.0% | |
| CAAAACAATCAAAGCTGTGA+GGG | + | chr3_3:46831472-46831491 | Msa0454910:CDS | 35.0% | |
| AAAACAATCAAAGCTGTGAG+GGG | + | chr3_3:46831473-46831492 | Msa0454910:CDS | 35.0% | |
| ATAAGATTTCCTGTTATCGC+AGG | + | chr3_3:46831616-46831635 | Msa0454910:intron | 35.0% | |
| TAAGATTTCCTGTTATCGCA+GGG | + | chr3_3:46831617-46831636 | Msa0454910:intron | 35.0% | |
| ACATATTCCAAATCATCGTC+AGG | - | chr3_3:46831686-46831705 | None:intergenic | 35.0% | |
| ATGTGGAGTTATTCTTGAGA+AGG | + | chr3_3:46831726-46831745 | Msa0454910:CDS | 35.0% | |
| CTAACAGGAATATTCACTTC+TGG | - | chr3_3:46831833-46831852 | None:intergenic | 35.0% | |
| ! | ACAGGAGTATGCTACTATAT+TGG | + | chr3_3:46831919-46831938 | Msa0454910:CDS | 35.0% |
| ! | TTACATGGACTACATTAAGG+AGG | + | chr3_3:46832069-46832088 | Msa0454910:CDS | 35.0% |
| AGAGAGAAAATCTGTTCATG+AGG | + | chr3_3:46832096-46832115 | Msa0454910:CDS | 35.0% | |
| !!! | GGAATTTTAACTACCATGCA+TGG | - | chr3_3:46832130-46832149 | None:intergenic | 35.0% |
| AAAAACCAACTCATGTCTGC+TGG | + | chr3_3:46829733-46829752 | Msa0454910:CDS | 40.0% | |
| AAAACCAACTCATGTCTGCT+GGG | + | chr3_3:46829734-46829753 | Msa0454910:CDS | 40.0% | |
| TCGAATACGATCTAGAAGCT+TGG | - | chr3_3:46829830-46829849 | None:intergenic | 40.0% | |
| CTCAGCACCTTGTTGAATAT+TGG | - | chr3_3:46829857-46829876 | None:intergenic | 40.0% | |
| !! | CAATATTCAACAAGGTGCTG+AGG | + | chr3_3:46829855-46829874 | Msa0454910:CDS | 40.0% |
| GGGAGTTATTGAATGATTGG+TGG | - | chr3_3:46829909-46829928 | None:intergenic | 40.0% | |
| ! | TTGAGCAAGTCTCTAGTTTG+CGG | - | chr3_3:46830003-46830022 | None:intergenic | 40.0% |
| TGGAATGCTTACCTTAGTCA+AGG | - | chr3_3:46830061-46830080 | None:intergenic | 40.0% | |
| GAAGCAGCAAGTCATAGAAT+TGG | - | chr3_3:46830081-46830100 | None:intergenic | 40.0% | |
| ! | GCTTCACGAATTGGAGTATT+AGG | - | chr3_3:46830199-46830218 | None:intergenic | 40.0% |
| TTCATCACTGCTTCACGAAT+TGG | - | chr3_3:46830208-46830227 | None:intergenic | 40.0% | |
| AAGCAGTGATGAAGCAGAAT+CGG | + | chr3_3:46830215-46830234 | Msa0454910:CDS | 40.0% | |
| TATTGCTCAGTTCAAGTCTC+AGG | + | chr3_3:46830369-46830388 | Msa0454910:CDS | 40.0% | |
| ATTGCTCAGTTCAAGTCTCA+GGG | + | chr3_3:46830370-46830389 | Msa0454910:CDS | 40.0% | |
| TTGTGCCAACAAGTGCAATA+AGG | + | chr3_3:46830446-46830465 | Msa0454910:CDS | 40.0% | |
| GAAAGACCCAACAGATAATG+GGG | - | chr3_3:46830571-46830590 | None:intergenic | 40.0% | |
| GGAAAGACCCAACAGATAAT+GGG | - | chr3_3:46830572-46830591 | None:intergenic | 40.0% | |
| ! | TGACTTGCAAAACAGTACAC+TGG | - | chr3_3:46830863-46830882 | None:intergenic | 40.0% |
| ! | GTGTACTGTTTTGCAAGTCA+AGG | + | chr3_3:46830863-46830882 | Msa0454910:intron | 40.0% |
| GTCAAGGTTATTGAAGGCTA+TGG | + | chr3_3:46830879-46830898 | Msa0454910:CDS | 40.0% | |
| GCTCGAATTGTGGTAACAAT+TGG | - | chr3_3:46831055-46831074 | None:intergenic | 40.0% | |
| CGTCAATAAAGCTCGAATTG+TGG | - | chr3_3:46831065-46831084 | None:intergenic | 40.0% | |
| CAAAGTTCCTTCATTGGATG+AGG | - | chr3_3:46831088-46831107 | None:intergenic | 40.0% | |
| ATAACCTTGGTCCATACTAG+TGG | + | chr3_3:46831185-46831204 | Msa0454910:intron | 40.0% | |
| GTATTGTTTGGGTGGGAAAA+AGG | + | chr3_3:46831269-46831288 | Msa0454910:intron | 40.0% | |
| TCGGTGCAAATGATAAGTGT+TGG | + | chr3_3:46831308-46831327 | Msa0454910:intron | 40.0% | |
| CTCGATATCACTAAGTACCT+GGG | - | chr3_3:46831513-46831532 | None:intergenic | 40.0% | |
| ACTCGATATCACTAAGTACC+TGG | - | chr3_3:46831514-46831533 | None:intergenic | 40.0% | |
| !! | GGACTTGAACATGCTATTTC+TGG | + | chr3_3:46831638-46831657 | Msa0454910:CDS | 40.0% |
| ! | TTCTGGCGCTAGTTTATATG+TGG | + | chr3_3:46831655-46831674 | Msa0454910:CDS | 40.0% |
| GAATAACTCCACATCTTCCA+AGG | - | chr3_3:46831720-46831739 | None:intergenic | 40.0% | |
| AGTAATGCTTCCAATGAGCT+AGG | - | chr3_3:46831794-46831813 | None:intergenic | 40.0% | |
| ATCACATCCTTTGTATGCAC+GGG | - | chr3_3:46831872-46831891 | None:intergenic | 40.0% | |
| CATCACATCCTTTGTATGCA+CGG | - | chr3_3:46831873-46831892 | None:intergenic | 40.0% | |
| GCATACAAAGGATGTGATGA+AGG | + | chr3_3:46831874-46831893 | Msa0454910:CDS | 40.0% | |
| TGCAATGCTTGGAAAGAAAC+AGG | + | chr3_3:46831901-46831920 | Msa0454910:CDS | 40.0% | |
| AGGAAAAAATTCGCACACCT+AGG | - | chr3_3:46831991-46832010 | None:intergenic | 40.0% | |
| TAGATGATCAATGACATCGG+AGG | - | chr3_3:46832011-46832030 | None:intergenic | 40.0% | |
| GGATTACAAGGACGACATTA+AGG | + | chr3_3:46832045-46832064 | Msa0454910:CDS | 40.0% | |
| ! | GGCTTACATGGACTACATTA+AGG | + | chr3_3:46832066-46832085 | Msa0454910:CDS | 40.0% |
| GTTGGAAATAGCATCTGCTG+TGG | - | chr3_3:46829659-46829678 | None:intergenic | 45.0% | |
| !! | AGATGCTATTTCCAACCCTG+TGG | + | chr3_3:46829663-46829682 | Msa0454910:CDS | 45.0% |
| GCTTTCTATCTTCAGCCACA+GGG | - | chr3_3:46829681-46829700 | None:intergenic | 45.0% | |
| TGCTTTCTATCTTCAGCCAC+AGG | - | chr3_3:46829682-46829701 | None:intergenic | 45.0% | |
| TGTGGCTGAAGATAGAAAGC+AGG | + | chr3_3:46829681-46829700 | Msa0454910:CDS | 45.0% | |
| AAAGCAGGCCAAAGTTGTTG+TGG | + | chr3_3:46829696-46829715 | Msa0454910:CDS | 45.0% | |
| GTCCTCATCCACAACAACTT+TGG | - | chr3_3:46829707-46829726 | None:intergenic | 45.0% | |
| TCATCATCACTCCGCTTAGA+AGG | - | chr3_3:46829760-46829779 | None:intergenic | 45.0% | |
| TAGAGCTGAACCCCAAGAAT+GGG | - | chr3_3:46829929-46829948 | None:intergenic | 45.0% | |
| ATAGAGCTGAACCCCAAGAA+TGG | - | chr3_3:46829930-46829949 | None:intergenic | 45.0% | |
| CACTGTTCTTGCAACTTTGC+AGG | + | chr3_3:46830144-46830163 | Msa0454910:intron | 45.0% | |
| TGTTCTTGCAACTTTGCAGG+TGG | + | chr3_3:46830147-46830166 | Msa0454910:intron | 45.0% | |
| TTGCTCAGTTCAAGTCTCAG+GGG | + | chr3_3:46830371-46830390 | Msa0454910:CDS | 45.0% | |
| ! | TTTGGAGCCCCATTATCTGT+TGG | + | chr3_3:46830561-46830580 | Msa0454910:intron | 45.0% |
| TTGGAGCCCCATTATCTGTT+GGG | + | chr3_3:46830562-46830581 | Msa0454910:intron | 45.0% | |
| GGGAAAGACCCAACAGATAA+TGG | - | chr3_3:46830573-46830592 | None:intergenic | 45.0% | |
| TTTCAGTGGTGAAGGAATCC+CGG | + | chr3_3:46830665-46830684 | Msa0454910:intron | 45.0% | |
| ATTGACGCCTCATCCAATGA+AGG | + | chr3_3:46831078-46831097 | Msa0454910:CDS | 45.0% | |
| TGGTTCACATGCCACTAGTA+TGG | - | chr3_3:46831199-46831218 | None:intergenic | 45.0% | |
| ! | ACCAGTGATTCTTTTGCCCT+AGG | + | chr3_3:46831215-46831234 | Msa0454910:intron | 45.0% |
| ACCTAGGGCAAAAGAATCAC+TGG | - | chr3_3:46831219-46831238 | None:intergenic | 45.0% | |
| AAAAGCAGCCTTGGAAGATG+TGG | + | chr3_3:46831709-46831728 | Msa0454910:CDS | 45.0% | |
| ATGAGCTAGGTGTAGATGCT+TGG | - | chr3_3:46831781-46831800 | None:intergenic | 45.0% | |
| AGCATCTACACCTAGCTCAT+TGG | + | chr3_3:46831781-46831800 | Msa0454910:CDS | 45.0% | |
| TATAGGTCCCGTGCATACAA+AGG | + | chr3_3:46831862-46831881 | Msa0454910:CDS | 45.0% | |
| ACAAAGGATGTGATGAAGGC+AGG | + | chr3_3:46831878-46831897 | Msa0454910:CDS | 45.0% | |
| !! | TGCAAGTTGGCTAGCTTCAA+GGG | - | chr3_3:46831963-46831982 | None:intergenic | 45.0% |
| GGACGACATTAAGGCTTACA+TGG | + | chr3_3:46832054-46832073 | Msa0454910:CDS | 45.0% | |
| ! | TGAGGAAGTTTTCCCATGCA+TGG | + | chr3_3:46832114-46832133 | Msa0454910:CDS | 45.0% |
| GGAAATAGCATCTGCTGTGG+AGG | - | chr3_3:46829656-46829675 | None:intergenic | 50.0% | |
| TCTATCTTCAGCCACAGGGT+TGG | - | chr3_3:46829677-46829696 | None:intergenic | 50.0% | |
| GGCCAAAGTTGTTGTGGATG+AGG | + | chr3_3:46829702-46829721 | Msa0454910:CDS | 50.0% | |
| AGGTGGATATGATTCCTCGC+TGG | + | chr3_3:46830164-46830183 | Msa0454910:intron | 50.0% | |
| TTAGGACATGCTTTCCAGCG+AGG | - | chr3_3:46830181-46830200 | None:intergenic | 50.0% | |
| TACGTACAGTGAAGACGTGC+AGG | + | chr3_3:46830740-46830759 | Msa0454910:CDS | 50.0% | |
| CATGCCACTAGTATGGACCA+AGG | - | chr3_3:46831192-46831211 | None:intergenic | 50.0% | |
| AGACGACATTACTTAGCGCC+TGG | - | chr3_3:46831427-46831446 | None:intergenic | 50.0% | |
| GTTCAAGTCCCTGCGATAAC+AGG | - | chr3_3:46831628-46831647 | None:intergenic | 50.0% | |
| GGTGAAGCCTGACGATGATT+TGG | + | chr3_3:46831676-46831695 | Msa0454910:CDS | 50.0% | |
| TTGAGAAGGATCGACAGCAG+TGG | + | chr3_3:46831740-46831759 | Msa0454910:CDS | 50.0% | |
| ATGAAGGCAGGTGCAATGCT+TGG | + | chr3_3:46831890-46831909 | Msa0454910:CDS | 50.0% | |
| !! | CTGCAAGTTGGCTAGCTTCA+AGG | - | chr3_3:46831964-46831983 | None:intergenic | 50.0% |
| AGCCAACTTGCAGATGACCT+AGG | + | chr3_3:46831971-46831990 | Msa0454910:CDS | 50.0% | |
| CACCTAGGTCATCTGCAAGT+TGG | - | chr3_3:46831976-46831995 | None:intergenic | 50.0% | |
| AAGGCCCAGCAGACATGAGT+TGG | - | chr3_3:46829741-46829760 | None:intergenic | 55.0% | |
| TGTCTGCTGGGCCTTCTAAG+CGG | + | chr3_3:46829746-46829765 | Msa0454910:CDS | 55.0% | |
| !! | GGGGCACAGAAAGAGTGTTG+TGG | - | chr3_3:46830491-46830510 | None:intergenic | 55.0% |
| GGGCATCAAGATCATTGCCC+AGG | + | chr3_3:46831493-46831512 | Msa0454910:CDS | 55.0% | |
| AGGATCGACAGCAGTGGTGA+CGG | + | chr3_3:46831746-46831765 | Msa0454910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 46829542 | 46832156 | 46829542 | ID=Msa0454910;Name=Msa0454910 |
| chr3_3 | mRNA | 46829542 | 46832156 | 46829542 | ID=Msa0454910-mRNA-1;Parent=Msa0454910;Name=Msa0454910-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.88|1|1|9|0|497 |
| chr3_3 | exon | 46829542 | 46829572 | 46829542 | ID=Msa0454910-mRNA-1:exon:8682;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46829662 | 46830068 | 46829662 | ID=Msa0454910-mRNA-1:exon:8683;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46830166 | 46830273 | 46830166 | ID=Msa0454910-mRNA-1:exon:8684;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46830367 | 46830467 | 46830367 | ID=Msa0454910-mRNA-1:exon:8685;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46830671 | 46830761 | 46830671 | ID=Msa0454910-mRNA-1:exon:8686;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46830864 | 46830974 | 46830864 | ID=Msa0454910-mRNA-1:exon:8687;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46831049 | 46831114 | 46831049 | ID=Msa0454910-mRNA-1:exon:8688;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46831455 | 46831514 | 46831455 | ID=Msa0454910-mRNA-1:exon:8689;Parent=Msa0454910-mRNA-1 |
| chr3_3 | exon | 46831638 | 46832156 | 46831638 | ID=Msa0454910-mRNA-1:exon:8690;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46829542 | 46829572 | 46829542 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46829662 | 46830068 | 46829662 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46830166 | 46830273 | 46830166 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46830367 | 46830467 | 46830367 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46830671 | 46830761 | 46830671 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46830864 | 46830974 | 46830864 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46831049 | 46831114 | 46831049 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46831455 | 46831514 | 46831455 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| chr3_3 | CDS | 46831638 | 46832156 | 46831638 | ID=Msa0454910-mRNA-1:cds;Parent=Msa0454910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
