Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502760 | XP_027189543.1 | 66.008 | 506 | 138 | 9 | 14 | 496 | 754 | 1248 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502760 | sp|Q10251|IF2P_SCHPO | 46.835 | 474 | 207 | 6 | 53 | 492 | 485 | 947 | 7.28e-129 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502760 | A0A3Q7XQ97 | 66.008 | 506 | 138 | 9 | 14 | 496 | 754 | 1248 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0502760 | 0.827849 | 1.246597e-54 | -8.615850e-47 |
| Msa0016570 | Msa0502760 | 0.867720 | 1.111354e-65 | -8.615850e-47 |
| Msa0016580 | Msa0502760 | 0.844504 | 7.258676e-59 | -8.615850e-47 |
| Msa0102070 | Msa0502760 | 0.828304 | 9.684347e-55 | -8.615850e-47 |
| Msa0110270 | Msa0502760 | 0.846194 | 2.530830e-59 | -8.615850e-47 |
| Msa0111510 | Msa0502760 | 0.811215 | 7.825169e-51 | -8.615850e-47 |
| Msa0123810 | Msa0502760 | 0.800969 | 1.122832e-48 | -8.615850e-47 |
| Msa0142220 | Msa0502760 | 0.802453 | 5.571336e-49 | -8.615850e-47 |
| Msa0145750 | Msa0502760 | 0.831187 | 1.924696e-55 | -8.615850e-47 |
| Msa0200000 | Msa0502760 | 0.845864 | 3.112018e-59 | -8.615850e-47 |
| Msa0227480 | Msa0502760 | 0.819701 | 1.011717e-52 | -8.615850e-47 |
| Msa0232850 | Msa0502760 | 0.847709 | 9.741395e-60 | -8.615850e-47 |
| Msa0365500 | Msa0502760 | 0.825215 | 5.292577e-54 | -8.615850e-47 |
| Msa0384800 | Msa0502760 | 0.860203 | 2.432062e-63 | -8.615850e-47 |
| Msa0394970 | Msa0502760 | 0.810879 | 9.252719e-51 | -8.615850e-47 |
| Msa0396600 | Msa0502760 | 0.810443 | 1.150069e-50 | -8.615850e-47 |
| Msa0396610 | Msa0502760 | 0.808521 | 2.973856e-50 | -8.615850e-47 |
| Msa0406120 | Msa0502760 | 0.816133 | 6.468911e-52 | -8.615850e-47 |
| Msa0414410 | Msa0502760 | 0.827306 | 1.682506e-54 | -8.615850e-47 |
| Msa0414420 | Msa0502760 | 0.860742 | 1.671247e-63 | -8.615850e-47 |
| Msa0435230 | Msa0502760 | 0.801128 | 1.042189e-48 | -8.615850e-47 |
| Msa0438620 | Msa0502760 | 0.840909 | 6.544426e-58 | -8.615850e-47 |
| Msa0444180 | Msa0502760 | 0.862194 | 6.020969e-64 | -8.615850e-47 |
| Msa0450000 | Msa0502760 | 0.819149 | 1.351697e-52 | -8.615850e-47 |
| Msa0451730 | Msa0502760 | 0.803651 | 3.148907e-49 | -8.615850e-47 |
| Msa0452900 | Msa0502760 | 0.868290 | 7.288159e-66 | -8.615850e-47 |
| Msa0453120 | Msa0502760 | 0.828147 | 1.056846e-54 | -8.615850e-47 |
| Msa0454370 | Msa0502760 | 0.812347 | 4.437179e-51 | -8.615850e-47 |
| Msa0454910 | Msa0502760 | 0.883623 | 3.836547e-71 | -8.615850e-47 |
| Msa0459160 | Msa0502760 | 0.800744 | 1.248208e-48 | -8.615850e-47 |
| Msa0267000 | Msa0502760 | 0.842838 | 2.024534e-58 | -8.615850e-47 |
| Msa0267010 | Msa0502760 | 0.847890 | 8.685092e-60 | -8.615850e-47 |
| Msa0270520 | Msa0502760 | 0.818408 | 1.991084e-52 | -8.615850e-47 |
| Msa0304170 | Msa0502760 | 0.808834 | 2.549446e-50 | -8.615850e-47 |
| Msa0306460 | Msa0502760 | 0.830082 | 3.587978e-55 | -8.615850e-47 |
| Msa0342240 | Msa0502760 | 0.837399 | 5.319413e-57 | -8.615850e-47 |
| Msa0350060 | Msa0502760 | 0.830260 | 3.246857e-55 | -8.615850e-47 |
| Msa0360510 | Msa0502760 | 0.824864 | 6.407720e-54 | -8.615850e-47 |
| Msa0363300 | Msa0502760 | 0.800747 | 1.246448e-48 | -8.615850e-47 |
| Msa0491590 | Msa0502760 | 0.842519 | 2.460878e-58 | -8.615850e-47 |
| Msa0502760 | Msa0506270 | 0.807267 | 5.494105e-50 | -8.615850e-47 |
| Msa0502760 | Msa0564890 | 0.848964 | 4.381286e-60 | -8.615850e-47 |
| Msa0502760 | Msa0596150 | 0.827349 | 1.642793e-54 | -8.615850e-47 |
| Msa0502760 | Msa0636170 | 0.814780 | 1.293878e-51 | -8.615850e-47 |
| Msa0502760 | Msa0639610 | 0.814694 | 1.351866e-51 | -8.615850e-47 |
| Msa0502760 | Msa0694370 | 0.820099 | 8.201529e-53 | -8.615850e-47 |
| Msa0502760 | Msa0726140 | 0.854836 | 9.440273e-62 | -8.615850e-47 |
| Msa0502760 | Msa0729800 | 0.836475 | 9.157500e-57 | -8.615850e-47 |
| Msa0502760 | Msa0733290 | 0.862251 | 5.785425e-64 | -8.615850e-47 |
| Msa0502760 | Msa0735080 | 0.802930 | 4.440419e-49 | -8.615850e-47 |
| Msa0502760 | Msa0743810 | 0.881802 | 1.773395e-70 | -8.615850e-47 |
| Msa0502760 | Msa0745060 | 0.859402 | 4.240555e-63 | -8.615850e-47 |
| Msa0502760 | Msa0767720 | 0.849853 | 2.476331e-60 | -8.615850e-47 |
| Msa0502760 | Msa0783160 | 0.864638 | 1.052530e-64 | -8.615850e-47 |
| Msa0502760 | Msa0787600 | 0.844030 | 9.730629e-59 | -8.615850e-47 |
| Msa0502760 | Msa0789250 | 0.819614 | 1.058901e-52 | -8.615850e-47 |
| Msa0502760 | Msa0808010 | 0.831734 | 1.410843e-55 | -8.615850e-47 |
| Msa0502760 | Msa0808020 | 0.824718 | 6.934648e-54 | -8.615850e-47 |
| Msa0502760 | Msa0811080 | 0.811049 | 8.504417e-51 | -8.615850e-47 |
| Msa0502760 | Msa0811270 | 0.831263 | 1.843541e-55 | -8.615850e-47 |
| Msa0502760 | Msa0824600 | 0.814719 | 1.335164e-51 | -8.615850e-47 |
| Msa0502760 | Msa0825860 | 0.857115 | 2.033042e-62 | -8.615850e-47 |
| Msa0502760 | Msa0846210 | 0.817980 | 2.488392e-52 | -8.615850e-47 |
| Msa0502760 | Msa0846330 | 0.823772 | 1.157182e-53 | -8.615850e-47 |
| Msa0502760 | Msa0846350 | 0.843492 | 1.355514e-58 | -8.615850e-47 |
| Msa0502760 | Msa0858980 | 0.818109 | 2.327031e-52 | -8.615850e-47 |
| Msa0502760 | Msa0860110 | 0.828908 | 6.922338e-55 | -8.615850e-47 |
| Msa0502760 | Msa0865320 | 0.837753 | 4.314925e-57 | -8.615850e-47 |
| Msa0502760 | Msa0885290 | 0.844372 | 7.873178e-59 | -8.615850e-47 |
| Msa0502760 | Msa0887920 | 0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa0502760 | Msa0888370 | 0.843251 | 1.571602e-58 | -8.615850e-47 |
| Msa0502760 | Msa0895270 | 0.807598 | 4.673523e-50 | -8.615850e-47 |
| Msa0502760 | Msa0898080 | 0.810616 | 1.055229e-50 | -8.615850e-47 |
| Msa0502760 | Msa0899600 | 0.805676 | 1.189755e-49 | -8.615850e-47 |
| Msa0502760 | Msa0907260 | 0.808843 | 2.538096e-50 | -8.615850e-47 |
| Msa0502760 | Msa0956270 | 0.811691 | 6.167747e-51 | -8.615850e-47 |
| Msa0502760 | Msa0957860 | 0.821837 | 3.264589e-53 | -8.615850e-47 |
| Msa0502760 | Msa0957960 | 0.821743 | 3.432897e-53 | -8.615850e-47 |
| Msa0502760 | Msa0967580 | 0.807622 | 4.620648e-50 | -8.615850e-47 |
| Msa0502760 | Msa0979410 | 0.805723 | 1.163004e-49 | -8.615850e-47 |
| Msa0502760 | Msa0981370 | 0.803236 | 3.838999e-49 | -8.615850e-47 |
| Msa0502760 | Msa0989060 | 0.854332 | 1.321031e-61 | -8.615850e-47 |
| Msa0502760 | Msa1016280 | 0.843869 | 1.074839e-58 | -8.615850e-47 |
| Msa0502760 | Msa1024240 | 0.809310 | 2.016092e-50 | -8.615850e-47 |
| Msa0502760 | Msa1025360 | 0.852226 | 5.306164e-61 | -8.615850e-47 |
| Msa0502760 | Msa1025370 | 0.853276 | 2.658675e-61 | -8.615850e-47 |
| Msa0502760 | Msa1044830 | 0.852233 | 5.279809e-61 | -8.615850e-47 |
| Msa0502760 | Msa1044840 | 0.855080 | 8.019277e-62 | -8.615850e-47 |
| Msa0502760 | Msa1092990 | 0.872243 | 3.693936e-67 | -8.615850e-47 |
| Msa0502760 | Msa1100980 | 0.861786 | 8.030443e-64 | -8.615850e-47 |
| Msa0502760 | Msa1109440 | 0.824761 | 6.773217e-54 | -8.615850e-47 |
| Msa0502760 | Msa1121200 | 0.809744 | 1.626556e-50 | -8.615850e-47 |
| Msa0502760 | Msa1131730 | 0.812823 | 3.491752e-51 | -8.615850e-47 |
| Msa0502760 | Msa1135740 | 0.840670 | 7.562162e-58 | -8.615850e-47 |
| Msa0502760 | Msa1146110 | 0.843553 | 1.305432e-58 | -8.615850e-47 |
| Msa0502760 | Msa1147790 | 0.818087 | 2.353144e-52 | -8.615850e-47 |
| Msa0502760 | Msa1150370 | 0.816669 | 4.908622e-52 | -8.615850e-47 |
| Msa0502760 | Msa1187940 | 0.861584 | 9.261842e-64 | -8.615850e-47 |
| Msa0502760 | Msa1187950 | 0.843814 | 1.111468e-58 | -8.615850e-47 |
| Msa0502760 | Msa1192640 | 0.844122 | 9.194480e-59 | -8.615850e-47 |
| Msa0502760 | Msa1196960 | 0.817924 | 2.561809e-52 | -8.615850e-47 |
| Msa0502760 | Msa1246880 | 0.815591 | 8.547453e-52 | -8.615850e-47 |
| Msa0502760 | Msa1269670 | 0.855669 | 5.401172e-62 | -8.615850e-47 |
| Msa0502760 | Msa1270230 | 0.866740 | 2.285235e-65 | -8.615850e-47 |
| Msa0502760 | Msa1270240 | 0.863897 | 1.792675e-64 | -8.615850e-47 |
| Msa0502760 | Msa1270270 | 0.854575 | 1.123147e-61 | -8.615850e-47 |
| Msa0502760 | Msa1273230 | 0.800505 | 1.396916e-48 | -8.615850e-47 |
| Msa0502760 | Msa1283330 | 0.866179 | 3.444861e-65 | -8.615850e-47 |
| Msa0502760 | Msa1285930 | 0.866407 | 2.916206e-65 | -8.615850e-47 |
| Msa0502760 | Msa1287800 | 0.855607 | 5.633728e-62 | -8.615850e-47 |
| Msa0502760 | Msa1287810 | 0.865097 | 7.557872e-65 | -8.615850e-47 |
| Msa0502760 | Msa1287820 | 0.803796 | 2.937861e-49 | -8.615850e-47 |
| Msa0502760 | Msa1287830 | 0.802413 | 5.676063e-49 | -8.615850e-47 |
| Msa0502760 | Msa1289430 | 0.822443 | 2.362188e-53 | -8.615850e-47 |
| Msa0502760 | Msa1320300 | 0.840179 | 1.015995e-57 | -8.615850e-47 |
| Msa0502760 | Msa1340590 | 0.851556 | 8.216920e-61 | -8.615850e-47 |
| Msa0502760 | Msa1342200 | 0.821261 | 4.436465e-53 | -8.615850e-47 |
| Msa0502760 | Msa1344520 | 0.800365 | 1.491261e-48 | -8.615850e-47 |
| Msa0502760 | Msa1386330 | 0.819183 | 1.327924e-52 | -8.615850e-47 |
| Msa0502760 | Msa1397580 | 0.845365 | 4.250009e-59 | -8.615850e-47 |
| Msa0502760 | Msa1402790 | 0.802203 | 6.269934e-49 | -8.615850e-47 |
| Msa0502760 | Msa1404000 | 0.866843 | 2.120084e-65 | -8.615850e-47 |
| Msa0502760 | Msa1415310 | 0.840020 | 1.118276e-57 | -8.615850e-47 |
| Msa0502760 | Msa1422180 | 0.870457 | 1.438087e-66 | -8.615850e-47 |
| Msa0502760 | Msa1433120 | 0.829918 | 3.934385e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502760 | MtrunA17_Chr1g0202021 | 64.272 | 529 | 135 | 9 | 11 | 496 | 701 | 1218 | 0.0 | 616 |
| Msa0502760 | MtrunA17_Chr1g0201991 | 61.437 | 529 | 158 | 6 | 5 | 496 | 184 | 703 | 0.0 | 607 |
| Msa0502760 | MtrunA17_Chr4g0000221 | 56.696 | 448 | 153 | 13 | 19 | 442 | 5 | 435 | 4.19e-147 | 429 |
| Msa0502760 | MtrunA17_Chr4g0000991 | 57.841 | 389 | 137 | 7 | 3 | 374 | 15 | 393 | 9.09e-143 | 416 |
| Msa0502760 | MtrunA17_Chr7g0264901 | 47.664 | 321 | 141 | 4 | 53 | 346 | 38 | 358 | 9.77e-85 | 267 |
| Msa0502760 | MtrunA17_Chr4g0004141 | 50.467 | 214 | 90 | 4 | 39 | 243 | 1 | 207 | 1.13e-60 | 205 |
| Msa0502760 | MtrunA17_Chr4g0004141 | 41.026 | 156 | 62 | 3 | 330 | 485 | 212 | 337 | 4.83e-22 | 98.6 |
| Msa0502760 | MtrunA17_Chr7g0264471 | 41.901 | 284 | 132 | 8 | 53 | 306 | 57 | 337 | 8.33e-57 | 192 |
| Msa0502760 | MtrunA17_Chr7g0263861 | 46.212 | 132 | 64 | 1 | 354 | 485 | 119 | 243 | 2.28e-27 | 110 |
| Msa0502760 | MtrunA17_Chr4g0038951 | 79.630 | 54 | 5 | 1 | 252 | 305 | 33 | 80 | 3.19e-20 | 85.1 |
| Msa0502760 | MtrunA17_Chr4g0038951 | 47.619 | 63 | 30 | 1 | 149 | 211 | 1 | 60 | 8.59e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0502760 | AT1G76810.1 | 55.114 | 528 | 193 | 6 | 4 | 496 | 654 | 1172 | 3.52e-179 | 538 |
| Msa0502760 | AT1G76720.1 | 55.882 | 476 | 158 | 6 | 54 | 496 | 630 | 1086 | 5.49e-162 | 490 |
| Msa0502760 | AT1G21160.1 | 51.044 | 527 | 211 | 7 | 4 | 496 | 451 | 964 | 1.26e-161 | 487 |
| Msa0502760 | AT1G76720.2 | 55.882 | 476 | 158 | 6 | 54 | 496 | 663 | 1119 | 1.99e-161 | 489 |
| Msa0502760 | AT2G27700.1 | 54.255 | 470 | 174 | 7 | 33 | 464 | 12 | 478 | 7.44e-158 | 457 |
| Msa0502760 | AT2G27700.2 | 54.140 | 471 | 174 | 8 | 33 | 464 | 12 | 479 | 2.59e-156 | 453 |
Find 105 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTATTTCGTCAATTTA+AGG | 0.151064 | 3_4:-45476054 | Msa0502760:CDS |
| GGACTTGAACACGCTATTTC+TGG | 0.155512 | 3_4:-45476440 | Msa0502760:CDS |
| ATGTTGTGATATTGCAATTT+TGG | 0.224570 | 3_4:-45478289 | Msa0502760:CDS |
| ATTTCTCAATCATGGTCTTT+TGG | 0.234728 | 3_4:+45477370 | None:intergenic |
| CTCAGCACCTTGTTGAATAT+TGG | 0.241938 | 3_4:+45478386 | None:intergenic |
| TAGCTCATTGGAAGCATTAC+TGG | 0.256266 | 3_4:-45476285 | Msa0502760:CDS |
| TTTCATCATTGCCTTGAATA+AGG | 0.292294 | 3_4:-45478193 | Msa0502760:intron |
| CATTCAATAACTCCCATTCT+TGG | 0.303659 | 3_4:-45478326 | Msa0502760:CDS |
| GGATTACATGGACGGCATTA+AGG | 0.337919 | 3_4:-45476033 | Msa0502760:CDS |
| TTCTGGCGCTAGTCTATATA+TGG | 0.338960 | 3_4:-45476423 | Msa0502760:CDS |
| GGTGATCAAATAGTTGTATC+TGG | 0.345405 | 3_4:-45477141 | Msa0502760:CDS |
| TTAACACAAAGTTCCTTCAT+TGG | 0.348516 | 3_4:+45476995 | None:intergenic |
| ATTCAATAACTCCCATTCTT+GGG | 0.354056 | 3_4:-45478325 | Msa0502760:CDS |
| CCTATATTTGTAGCACTAAC+AGG | 0.364895 | 3_4:+45476233 | None:intergenic |
| TATTATTTAAACAAATCAAT+AGG | 0.372750 | 3_4:-45477818 | Msa0502760:CDS |
| TGCTTTCTATCTTCAGCCAC+AGG | 0.379616 | 3_4:+45478561 | None:intergenic |
| GGTGAAGCCTGATGATGATT+TGG | 0.394558 | 3_4:-45476402 | Msa0502760:CDS |
| TATTGCTCAGTTCAAGTCTC+AGG | 0.396407 | 3_4:-45477858 | Msa0502760:CDS |
| TTACCTAGCATGTAGCAAAT+TGG | 0.398483 | 3_4:+45478453 | None:intergenic |
| TCAAGCTGACTTTCATATAA+AGG | 0.398585 | 3_4:-45477996 | Msa0502760:CDS |
| CTGCAAGTTGGCTAGCTTCA+AGG | 0.407350 | 3_4:+45476117 | None:intergenic |
| ACAGGAGTATGCTACTATAT+TGG | 0.407838 | 3_4:-45476159 | Msa0502760:CDS |
| TTCATCACTGCTACACGAAT+TGG | 0.409024 | 3_4:+45478034 | None:intergenic |
| TCATCATCACTCCGCTTAGA+AGG | 0.409417 | 3_4:+45478483 | None:intergenic |
| GCTACACGAATTGGAGCATT+AGG | 0.411662 | 3_4:+45478043 | None:intergenic |
| TTGTGCCAACAGGTGCAATA+AGG | 0.411898 | 3_4:-45477781 | Msa0502760:intron |
| ACATATTCCAAATCATCATC+AGG | 0.412129 | 3_4:+45476395 | None:intergenic |
| GGCATCTACACCTAGCTCAT+TGG | 0.414459 | 3_4:-45476297 | Msa0502760:CDS |
| AATGAAGGAACTTTGTGTTA+AGG | 0.418973 | 3_4:-45476993 | Msa0502760:intron |
| GACATTAGAAATAACATGTC+CGG | 0.420081 | 3_4:+45477402 | None:intergenic |
| ATCCTCAACCACAACAACTT+TGG | 0.429900 | 3_4:+45478536 | None:intergenic |
| TGTAATGCTTGGAAAGAAAC+AGG | 0.439527 | 3_4:-45476177 | Msa0502760:CDS |
| TGGAATGCTGACCTTATTCA+AGG | 0.444984 | 3_4:+45478182 | None:intergenic |
| CCTGTTAGTGCTACAAATAT+AGG | 0.452695 | 3_4:-45476233 | Msa0502760:CDS |
| CTTTCATATAAAGGTCTTTG+AGG | 0.455230 | 3_4:-45477987 | Msa0502760:intron |
| TTGAGCAAGTCTCTAGTTTG+CGG | 0.457372 | 3_4:+45478240 | None:intergenic |
| GGCTTACATGGACTACGTTA+AGG | 0.463624 | 3_4:-45476012 | Msa0502760:CDS |
| GGGAGTTATTGAATGATTGC+TGG | 0.463993 | 3_4:+45478334 | None:intergenic |
| AAAACCAACTCATGTCTGTT+GGG | 0.467686 | 3_4:-45478506 | Msa0502760:CDS |
| TTGCAAGTCAAGGTTATTGA+AGG | 0.478444 | 3_4:-45477213 | Msa0502760:CDS |
| GTACGTAAATTTCTCAATCA+TGG | 0.480088 | 3_4:+45477362 | None:intergenic |
| ACATTCAGCATTGTGCCAAC+AGG | 0.483959 | 3_4:-45477791 | Msa0502760:CDS |
| GTTAATGGTGTTCTACATGA+AGG | 0.485509 | 3_4:-45477162 | Msa0502760:CDS |
| GTCAAGGTTATTGAAGGCTA+TGG | 0.489864 | 3_4:-45477207 | Msa0502760:CDS |
| ATGAGCTAGGTGTAGATGCC+TGG | 0.492758 | 3_4:+45476300 | None:intergenic |
| TCGTCAATTTAAGGATTACA+TGG | 0.497561 | 3_4:-45476045 | Msa0502760:CDS |
| ATTTGATATTTCAGTGGTGA+AGG | 0.501007 | 3_4:-45477429 | Msa0502760:intron |
| AATAGTTGTATCTGGAATGC+AGG | 0.504285 | 3_4:-45477133 | Msa0502760:intron |
| GGCCAAAGTTGTTGTGGTTG+AGG | 0.504378 | 3_4:-45478538 | Msa0502760:CDS |
| TGGTGATGGCGTTTATGTCC+AGG | 0.505358 | 3_4:-45476318 | Msa0502760:CDS |
| TAGCCAACTTGCAGATGACC+TGG | 0.507809 | 3_4:-45476108 | Msa0502760:CDS |
| ATCACATCCTTCGTATGCAC+TGG | 0.510474 | 3_4:+45476209 | None:intergenic |
| AGAGAGAGAATCTGTTGATG+AGG | 0.512217 | 3_4:-45475982 | Msa0502760:CDS |
| TTCAATAACTCCCATTCTTG+GGG | 0.516062 | 3_4:-45478324 | Msa0502760:CDS |
| AAGGCCCAACAGACATGAGT+TGG | 0.516577 | 3_4:+45478502 | None:intergenic |
| TAGAGCTGAACCCCAAGAAT+GGG | 0.517077 | 3_4:+45478314 | None:intergenic |
| CAAAGTTCCTTCATTGGATG+AGG | 0.519140 | 3_4:+45477001 | None:intergenic |
| ATTGACACCTCATCCAATGA+AGG | 0.523422 | 3_4:-45477008 | Msa0502760:CDS |
| ATAGAGCTGAACCCCAAGAA+TGG | 0.530896 | 3_4:+45478313 | None:intergenic |
| TGCAAGTTGGCTAGCTTCAA+GGG | 0.536115 | 3_4:+45476118 | None:intergenic |
| GGACGGCATTAAGGCTTACA+TGG | 0.536858 | 3_4:-45476024 | Msa0502760:CDS |
| TTACCAATTTGCTACATGCT+AGG | 0.543273 | 3_4:-45478456 | Msa0502760:CDS |
| ACGAAGGATGTGATGAAGGC+AGG | 0.546463 | 3_4:-45476200 | Msa0502760:CDS |
| GATGTGGAGTTATTCTTGAG+AGG | 0.548290 | 3_4:-45476353 | Msa0502760:CDS |
| GCTTTCTATCTTCAGCCACA+GGG | 0.549214 | 3_4:+45478562 | None:intergenic |
| GGGCATCAAGATCATTGCCC+AGG | 0.550099 | 3_4:-45476585 | Msa0502760:intron |
| ATGTGGAGTTATTCTTGAGA+GGG | 0.554543 | 3_4:-45476352 | Msa0502760:CDS |
| AAAAGCGGCCTTCGAAGATG+TGG | 0.554660 | 3_4:-45476369 | Msa0502760:CDS |
| ACATTAGAAATAACATGTCC+GGG | 0.555589 | 3_4:+45477403 | None:intergenic |
| ATTGCTCAGTTCAAGTCTCA+GGG | 0.557151 | 3_4:-45477857 | Msa0502760:CDS |
| CAATTTAAGGATTACATGGA+CGG | 0.558916 | 3_4:-45476041 | Msa0502760:CDS |
| GCATACGAAGGATGTGATGA+AGG | 0.563379 | 3_4:-45476204 | Msa0502760:CDS |
| TACGTACAGTGAAAACGTGC+AGG | 0.563555 | 3_4:-45477346 | Msa0502760:intron |
| AGTAATGCTTCCAATGAGCT+AGG | 0.564410 | 3_4:+45476287 | None:intergenic |
| AGTTACCTTATTGCACCTGT+TGG | 0.566159 | 3_4:+45477776 | None:intergenic |
| TCTATCTTCAGCCACAGGGT+TGG | 0.566996 | 3_4:+45478566 | None:intergenic |
| CACCCAGGTCATCTGCAAGT+TGG | 0.567348 | 3_4:+45476105 | None:intergenic |
| CAAAGAAATCAAAGCTGTGA+GGG | 0.570214 | 3_4:-45476606 | Msa0502760:CDS |
| TTTCAGTGGTGAAGGAATCC+CGG | 0.575451 | 3_4:-45477421 | Msa0502760:intron |
| AAAGCAGGCCAAAGTTGTTG+TGG | 0.584453 | 3_4:-45478544 | Msa0502760:CDS |
| GGGATCGACAGTAGTGGTGA+TGG | 0.584966 | 3_4:-45476332 | Msa0502760:CDS |
| AAATAGATGATCGATGACAT+TGG | 0.585243 | 3_4:+45476067 | None:intergenic |
| ATGAAGGCAGGTGTAATGCT+TGG | 0.590346 | 3_4:-45476188 | Msa0502760:CDS |
| TGTGGCTGAAGATAGAAAGC+AGG | 0.600172 | 3_4:-45478559 | Msa0502760:CDS |
| CAATATTCAACAAGGTGCTG+AGG | 0.616143 | 3_4:-45478385 | Msa0502760:CDS |
| CGAGAAACCAATATTCAACA+AGG | 0.617328 | 3_4:-45478393 | Msa0502760:CDS |
| GAATAACTCCACATCTTCGA+AGG | 0.618972 | 3_4:+45476361 | None:intergenic |
| TTGGTTGTTAACATTATGCG+TGG | 0.622797 | 3_4:-45478270 | Msa0502760:CDS |
| TAGATGATCGATGACATTGG+AGG | 0.627169 | 3_4:+45476070 | None:intergenic |
| GAGGCTCCGGTCATGACGAA+AGG | 0.627668 | 3_4:-45478710 | None:intergenic |
| TGAGGAAGTCTTCCCATGCA+TGG | 0.630259 | 3_4:-45475964 | Msa0502760:CDS |
| TGTCAATAAAGCTCGAATTG+TGG | 0.631490 | 3_4:+45477024 | None:intergenic |
| AGCCAACTTGCAGATGACCT+GGG | 0.639297 | 3_4:-45476107 | Msa0502760:CDS |
| ATGCTAGGTAATTTCTACAC+TGG | 0.643265 | 3_4:-45478441 | Msa0502760:CDS |
| TTGAGAGGGATCGACAGTAG+TGG | 0.645635 | 3_4:-45476338 | Msa0502760:CDS |
| TGTTATTTCTAATGTCTCAG+TGG | 0.650373 | 3_4:-45477395 | Msa0502760:CDS |
| AGGTGCTATTTCCAACCCTG+TGG | 0.655657 | 3_4:-45478577 | Msa0502760:CDS |
| AAAGAAATCAAAGCTGTGAG+GGG | 0.659897 | 3_4:-45476605 | Msa0502760:CDS |
| AGGTGGATATGATTCCTCGC+TGG | 0.668513 | 3_4:-45478075 | Msa0502760:CDS |
| TGTCTGTTGGGCCTTCTAAG+CGG | 0.669760 | 3_4:-45478494 | Msa0502760:CDS |
| TTACATGGACTACGTTAAGG+AGG | 0.675391 | 3_4:-45476009 | Msa0502760:CDS |
| TTAGGACATGCTTTCCAGCG+AGG | 0.675961 | 3_4:+45478061 | None:intergenic |
| TATAGGTCCAGTGCATACGA+AGG | 0.681108 | 3_4:-45476216 | Msa0502760:CDS |
| ACAAAGAAATCAAAGCTGTG+AGG | 0.694513 | 3_4:-45476607 | Msa0502760:CDS |
| TTGCTCAGTTCAAGTCTCAG+GGG | 0.697871 | 3_4:-45477856 | Msa0502760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTTAAACAAATCAAT+AGG | - | chr3_4:45476824-45476843 | Msa0502760:intron | 10.0% |
| !! | TTAAATATTATGTGAAAATA+AGG | + | chr3_4:45477326-45477345 | None:intergenic | 10.0% |
| !! | ACTAATAAACTTTATAATTT+AGG | - | chr3_4:45477583-45477602 | Msa0502760:intron | 10.0% |
| !! | CTAATAAACTTTATAATTTA+GGG | - | chr3_4:45477584-45477603 | Msa0502760:intron | 10.0% |
| !! | TTTAATATTTGATATTTCAG+TGG | - | chr3_4:45477207-45477226 | Msa0502760:CDS | 15.0% |
| !! | AAAATCAAGAAAAACATAAT+TGG | + | chr3_4:45478124-45478143 | None:intergenic | 15.0% |
| !!! | TTGTTGTTTAACATCAATAA+TGG | + | chr3_4:45475991-45476010 | None:intergenic | 20.0% |
| !!! | AAAAAACACATAATGGAATT+TGG | + | chr3_4:45476505-45476524 | None:intergenic | 20.0% |
| !!! | TTTGTTTGGTTTAATATGTA+TGG | - | chr3_4:45476952-45476971 | Msa0502760:intron | 20.0% |
| !!! | TTGTTTGGTTTAATATGTAT+GGG | - | chr3_4:45476953-45476972 | Msa0502760:intron | 20.0% |
| !!! | ATTGATGTTGTTTTAGTTAA+TGG | - | chr3_4:45477465-45477484 | Msa0502760:intron | 20.0% |
| !! | ATAAAAGTAATATCAACCTA+GGG | + | chr3_4:45477796-45477815 | None:intergenic | 20.0% |
| !! | AATAAAAGTAATATCAACCT+AGG | + | chr3_4:45477797-45477816 | None:intergenic | 20.0% |
| !!! | TGATATTACTTTTATTGATC+CGG | - | chr3_4:45477801-45477820 | Msa0502760:CDS | 20.0% |
| !!! | TTTGGAATATGTTAAAAAAG+CGG | - | chr3_4:45478258-45478277 | Msa0502760:CDS | 20.0% |
| ! | GGTAATGCTAAATCTAAAAA+AGG | - | chr3_4:45475953-45475972 | Msa0502760:CDS | 25.0% |
| ! | TTGTTTAACATCAATAATGG+AGG | + | chr3_4:45475988-45476007 | None:intergenic | 25.0% |
| !! | ATGTTGTGATATTGCAATTT+TGG | - | chr3_4:45476353-45476372 | Msa0502760:CDS | 25.0% |
| !!! | TCCATTATGTGTTTTTTTAC+AGG | - | chr3_4:45476508-45476527 | Msa0502760:intron | 25.0% |
| ! | ACCTGTAAAAAAACACATAA+TGG | + | chr3_4:45476512-45476531 | None:intergenic | 25.0% |
| !! | CTTTCTTTTATTCTAAGTTG+TGG | - | chr3_4:45476707-45476726 | Msa0502760:intron | 25.0% |
| ! | TAAACCAAACAAATCCTAAA+TGG | + | chr3_4:45476945-45476964 | None:intergenic | 25.0% |
| !!! | ATCAAATAAAGTTAGTTTGC+TGG | - | chr3_4:45477013-45477032 | Msa0502760:CDS | 25.0% |
| !!! | TCAAATAAAGTTAGTTTGCT+GGG | - | chr3_4:45477014-45477033 | Msa0502760:CDS | 25.0% |
| ! | AAATCTGCTTAATTCTTTGA+CGG | - | chr3_4:45477167-45477186 | Msa0502760:CDS | 25.0% |
| ! | TTATAAAGTTTATTAGTCCG+AGG | + | chr3_4:45477580-45477599 | None:intergenic | 25.0% |
| ! | ATGGCAAAACTATATAATCT+TGG | - | chr3_4:45477728-45477747 | Msa0502760:intron | 25.0% |
| ! | AAGTAATGTTGTCTAATTTC+AGG | - | chr3_4:45477997-45478016 | Msa0502760:CDS | 25.0% |
| ! | AGTAATGTTGTCTAATTTCA+GGG | - | chr3_4:45477998-45478017 | Msa0502760:CDS | 25.0% |
| ! | TCATCTATTTCGTCAATTTA+AGG | - | chr3_4:45478588-45478607 | Msa0502760:intron | 25.0% |
| ATTCAATAACTCCCATTCTT+GGG | - | chr3_4:45476317-45476336 | Msa0502760:CDS | 30.0% | |
| TTTCATCATTGCCTTGAATA+AGG | - | chr3_4:45476449-45476468 | Msa0502760:intron | 30.0% | |
| AGAATAGTGTGACAAAATTG+AGG | + | chr3_4:45476536-45476555 | None:intergenic | 30.0% | |
| ! | TCAAGCTGACTTTCATATAA+AGG | - | chr3_4:45476646-45476665 | Msa0502760:intron | 30.0% |
| CTTTCATATAAAGGTCTTTG+AGG | - | chr3_4:45476655-45476674 | Msa0502760:intron | 30.0% | |
| GTAAACAGAGAATATTAGCA+TGG | + | chr3_4:45476756-45476775 | None:intergenic | 30.0% | |
| ATTTGATATTTCAGTGGTGA+AGG | - | chr3_4:45477213-45477232 | Msa0502760:CDS | 30.0% | |
| ACATTAGAAATAACATGTCC+GGG | + | chr3_4:45477242-45477261 | None:intergenic | 30.0% | |
| GACATTAGAAATAACATGTC+CGG | + | chr3_4:45477243-45477262 | None:intergenic | 30.0% | |
| !! | TGTTATTTCTAATGTCTCAG+TGG | - | chr3_4:45477247-45477266 | Msa0502760:intron | 30.0% |
| ! | TTTCTCAATCATGGTCTTTT+GGG | + | chr3_4:45477274-45477293 | None:intergenic | 30.0% |
| ! | ATTTCTCAATCATGGTCTTT+TGG | + | chr3_4:45477275-45477294 | None:intergenic | 30.0% |
| GTACGTAAATTTCTCAATCA+TGG | + | chr3_4:45477283-45477302 | None:intergenic | 30.0% | |
| TTAATACTTACTTTCTGCCT+CGG | - | chr3_4:45477560-45477579 | Msa0502760:intron | 30.0% | |
| TTAACACAAAGTTCCTTCAT+TGG | + | chr3_4:45477650-45477669 | None:intergenic | 30.0% | |
| AATGAAGGAACTTTGTGTTA+AGG | - | chr3_4:45477649-45477668 | Msa0502760:intron | 30.0% | |
| !! | CTATCAAATTTGTTGCTTGA+TGG | - | chr3_4:45477709-45477728 | Msa0502760:intron | 30.0% |
| ATTGATCCGGTATTTAAGTA+TGG | - | chr3_4:45477814-45477833 | Msa0502760:CDS | 30.0% | |
| ! | TATTTAAGTATGGTTTGGGT+AGG | - | chr3_4:45477824-45477843 | Msa0502760:CDS | 30.0% |
| !! | ATGATAAGTGTTGGAAACTT+AGG | - | chr3_4:45477879-45477898 | Msa0502760:intron | 30.0% |
| TTACGATATTCGTAACATGA+AGG | - | chr3_4:45477908-45477927 | Msa0502760:intron | 30.0% | |
| TATATCTGTGTAGAGAGAAT+CGG | - | chr3_4:45478150-45478169 | Msa0502760:intron | 30.0% | |
| ACATATTCCAAATCATCATC+AGG | + | chr3_4:45478250-45478269 | None:intergenic | 30.0% | |
| AAATAGATGATCGATGACAT+TGG | + | chr3_4:45478578-45478597 | None:intergenic | 30.0% | |
| TCGTCAATTTAAGGATTACA+TGG | - | chr3_4:45478597-45478616 | Msa0502760:intron | 30.0% | |
| CAATTTAAGGATTACATGGA+CGG | - | chr3_4:45478601-45478620 | Msa0502760:intron | 30.0% | |
| !!! | GAATTTTAACTACCATGCAT+GGG | + | chr3_4:45478693-45478712 | None:intergenic | 30.0% |
| AAAAACCAACTCATGTCTGT+TGG | - | chr3_4:45476135-45476154 | Msa0502760:CDS | 35.0% | |
| AAAACCAACTCATGTCTGTT+GGG | - | chr3_4:45476136-45476155 | Msa0502760:CDS | 35.0% | |
| !! | TTACCAATTTGCTACATGCT+AGG | - | chr3_4:45476186-45476205 | Msa0502760:CDS | 35.0% |
| TTACCTAGCATGTAGCAAAT+TGG | + | chr3_4:45476192-45476211 | None:intergenic | 35.0% | |
| ATGCTAGGTAATTTCTACAC+TGG | - | chr3_4:45476201-45476220 | Msa0502760:CDS | 35.0% | |
| CGAGAAACCAATATTCAACA+AGG | - | chr3_4:45476249-45476268 | Msa0502760:CDS | 35.0% | |
| CATTCAATAACTCCCATTCT+TGG | - | chr3_4:45476316-45476335 | Msa0502760:CDS | 35.0% | |
| TTCAATAACTCCCATTCTTG+GGG | - | chr3_4:45476318-45476337 | Msa0502760:CDS | 35.0% | |
| TTGGTTGTTAACATTATGCG+TGG | - | chr3_4:45476372-45476391 | Msa0502760:CDS | 35.0% | |
| GAAGCAGCAAGTCATAAAAT+TGG | + | chr3_4:45476483-45476502 | None:intergenic | 35.0% | |
| CACTATTCTTACAACTTTGC+AGG | - | chr3_4:45476547-45476566 | Msa0502760:intron | 35.0% | |
| TATTCTTACAACTTTGCAGG+TGG | - | chr3_4:45476550-45476569 | Msa0502760:intron | 35.0% | |
| AACAAATCCTAAATGGATGC+AGG | + | chr3_4:45476938-45476957 | None:intergenic | 35.0% | |
| ! | GCATCCATTTAGGATTTGTT+TGG | - | chr3_4:45476938-45476957 | Msa0502760:intron | 35.0% |
| GTTTAATATGTATGGGAGAG+TGG | - | chr3_4:45476960-45476979 | Msa0502760:intron | 35.0% | |
| !! | TGGAGAAGATTCTAGAATCA+AGG | - | chr3_4:45476983-45477002 | Msa0502760:intron | 35.0% |
| !! | GGAGAAGATTCTAGAATCAA+GGG | - | chr3_4:45476984-45477003 | Msa0502760:intron | 35.0% |
| TTATCCCCATCAGAAACAAA+TGG | + | chr3_4:45477089-45477108 | None:intergenic | 35.0% | |
| ! | TGTTTCTGATGGGGATAATT+TGG | - | chr3_4:45477091-45477110 | Msa0502760:intron | 35.0% |
| !!! | GAGCGCAAATCTTTGTTTTT+GGG | - | chr3_4:45477117-45477136 | Msa0502760:intron | 35.0% |
| AGACTTAACTGTTATTCCAC+TGG | - | chr3_4:45477387-45477406 | Msa0502760:CDS | 35.0% | |
| TTGCAAGTCAAGGTTATTGA+AGG | - | chr3_4:45477429-45477448 | Msa0502760:intron | 35.0% | |
| GTTAATGGTGTTCTACATGA+AGG | - | chr3_4:45477480-45477499 | Msa0502760:intron | 35.0% | |
| GGTGATCAAATAGTTGTATC+TGG | - | chr3_4:45477501-45477520 | Msa0502760:intron | 35.0% | |
| ! | AATAGTTGTATCTGGAATGC+AGG | - | chr3_4:45477509-45477528 | Msa0502760:intron | 35.0% |
| TGTCAATAAAGCTCGAATTG+TGG | + | chr3_4:45477621-45477640 | None:intergenic | 35.0% | |
| ACATACACACTAGATGGTTA+TGG | + | chr3_4:45477755-45477774 | None:intergenic | 35.0% | |
| ATAACCATCTAGTGTGTATG+TGG | - | chr3_4:45477754-45477773 | Msa0502760:intron | 35.0% | |
| TCCGGTATTTAAGTATGGTT+TGG | - | chr3_4:45477819-45477838 | Msa0502760:CDS | 35.0% | |
| CCCAAACCATACTTAAATAC+CGG | + | chr3_4:45477823-45477842 | None:intergenic | 35.0% | |
| CCGGTATTTAAGTATGGTTT+GGG | - | chr3_4:45477820-45477839 | Msa0502760:CDS | 35.0% | |
| TCCAACACTTATCATTTGCA+CGG | + | chr3_4:45477874-45477893 | None:intergenic | 35.0% | |
| TTAGCAAGTAAAGTTGTTCG+TGG | - | chr3_4:45477947-45477966 | Msa0502760:intron | 35.0% | |
| ACAAAGAAATCAAAGCTGTG+AGG | - | chr3_4:45478035-45478054 | Msa0502760:CDS | 35.0% | |
| CAAAGAAATCAAAGCTGTGA+GGG | - | chr3_4:45478036-45478055 | Msa0502760:CDS | 35.0% | |
| AAAGAAATCAAAGCTGTGAG+GGG | - | chr3_4:45478037-45478056 | Msa0502760:CDS | 35.0% | |
| CAACTCAATATCAAGTACCT+GGG | + | chr3_4:45478077-45478096 | None:intergenic | 35.0% | |
| TCAACTCAATATCAAGTACC+TGG | + | chr3_4:45478078-45478097 | None:intergenic | 35.0% | |
| ATAAGATTTCCTGTTATCGC+AGG | - | chr3_4:45478180-45478199 | Msa0502760:intron | 35.0% | |
| TAAGATTTCCTGTTATCGCA+GGG | - | chr3_4:45478181-45478200 | Msa0502760:intron | 35.0% | |
| ATGTGGAGTTATTCTTGAGA+GGG | - | chr3_4:45478290-45478309 | Msa0502760:CDS | 35.0% | |
| CCTATATTTGTAGCACTAAC+AGG | + | chr3_4:45478412-45478431 | None:intergenic | 35.0% | |
| CCTGTTAGTGCTACAAATAT+AGG | - | chr3_4:45478409-45478428 | Msa0502760:CDS | 35.0% | |
| TGTAATGCTTGGAAAGAAAC+AGG | - | chr3_4:45478465-45478484 | Msa0502760:CDS | 35.0% | |
| ! | ACAGGAGTATGCTACTATAT+TGG | - | chr3_4:45478483-45478502 | Msa0502760:CDS | 35.0% |
| !!! | GGAATTTTAACTACCATGCA+TGG | + | chr3_4:45478694-45478713 | None:intergenic | 35.0% |
| ATCCTCAACCACAACAACTT+TGG | + | chr3_4:45476109-45476128 | None:intergenic | 40.0% | |
| CTCAGCACCTTGTTGAATAT+TGG | + | chr3_4:45476259-45476278 | None:intergenic | 40.0% | |
| !! | CAATATTCAACAAGGTGCTG+AGG | - | chr3_4:45476257-45476276 | Msa0502760:CDS | 40.0% |
| GGGAGTTATTGAATGATTGC+TGG | + | chr3_4:45476311-45476330 | None:intergenic | 40.0% | |
| ! | TTGAGCAAGTCTCTAGTTTG+CGG | + | chr3_4:45476405-45476424 | None:intergenic | 40.0% |
| TGGAATGCTGACCTTATTCA+AGG | + | chr3_4:45476463-45476482 | None:intergenic | 40.0% | |
| TTCATCACTGCTACACGAAT+TGG | + | chr3_4:45476611-45476630 | None:intergenic | 40.0% | |
| TATTGCTCAGTTCAAGTCTC+AGG | - | chr3_4:45476784-45476803 | Msa0502760:intron | 40.0% | |
| ATTGCTCAGTTCAAGTCTCA+GGG | - | chr3_4:45476785-45476804 | Msa0502760:intron | 40.0% | |
| AGTTACCTTATTGCACCTGT+TGG | + | chr3_4:45476869-45476888 | None:intergenic | 40.0% | |
| TCTTGTTCCTGCATCCATTT+AGG | - | chr3_4:45476928-45476947 | Msa0502760:intron | 40.0% | |
| TAATATGTATGGGAGAGTGG+TGG | - | chr3_4:45476963-45476982 | Msa0502760:intron | 40.0% | |
| !! | GAAGATTCTAGAATCAAGGG+AGG | - | chr3_4:45476987-45477006 | Msa0502760:intron | 40.0% |
| AAACAAATGGAGCAGCTTAC+AGG | + | chr3_4:45477076-45477095 | None:intergenic | 40.0% | |
| !! | CTGCTCCATTTGTTTCTGAT+GGG | - | chr3_4:45477081-45477100 | Msa0502760:intron | 40.0% |
| !! | TGCTCCATTTGTTTCTGATG+GGG | - | chr3_4:45477082-45477101 | Msa0502760:intron | 40.0% |
| TCTGATGGGGATAATTTGGT+AGG | - | chr3_4:45477095-45477114 | Msa0502760:intron | 40.0% | |
| !!! | GGAGCGCAAATCTTTGTTTT+TGG | - | chr3_4:45477116-45477135 | Msa0502760:intron | 40.0% |
| CTTAACTGTTATTCCACTGG+CGG | - | chr3_4:45477390-45477409 | Msa0502760:CDS | 40.0% | |
| TTAACTGTTATTCCACTGGC+GGG | - | chr3_4:45477391-45477410 | Msa0502760:CDS | 40.0% | |
| ! | TGACTTGCAAAACAGTACAC+TGG | + | chr3_4:45477419-45477438 | None:intergenic | 40.0% |
| ! | GTGTACTGTTTTGCAAGTCA+AGG | - | chr3_4:45477419-45477438 | Msa0502760:intron | 40.0% |
| GTCAAGGTTATTGAAGGCTA+TGG | - | chr3_4:45477435-45477454 | Msa0502760:intron | 40.0% | |
| ATTGACACCTCATCCAATGA+AGG | - | chr3_4:45477634-45477653 | Msa0502760:intron | 40.0% | |
| CAAAGTTCCTTCATTGGATG+AGG | + | chr3_4:45477644-45477663 | None:intergenic | 40.0% | |
| ! | GTATGGTTTGGGTAGGAAAA+AGG | - | chr3_4:45477831-45477850 | Msa0502760:CDS | 40.0% |
| TCCGTGCAAATGATAAGTGT+TGG | - | chr3_4:45477870-45477889 | Msa0502760:intron | 40.0% | |
| TTCATATTAGCATGCCTTCC+AGG | - | chr3_4:45477970-45477989 | Msa0502760:intron | 40.0% | |
| ! | TTCTGGCGCTAGTCTATATA+TGG | - | chr3_4:45478219-45478238 | Msa0502760:CDS | 40.0% |
| GAATAACTCCACATCTTCGA+AGG | + | chr3_4:45478284-45478303 | None:intergenic | 40.0% | |
| GATGTGGAGTTATTCTTGAG+AGG | - | chr3_4:45478289-45478308 | Msa0502760:CDS | 40.0% | |
| AGTAATGCTTCCAATGAGCT+AGG | + | chr3_4:45478358-45478377 | None:intergenic | 40.0% | |
| !! | TAGCTCATTGGAAGCATTAC+TGG | - | chr3_4:45478357-45478376 | Msa0502760:CDS | 40.0% |
| TAGATGATCGATGACATTGG+AGG | + | chr3_4:45478575-45478594 | None:intergenic | 40.0% | |
| ! | TTACATGGACTACGTTAAGG+AGG | - | chr3_4:45478633-45478652 | Msa0502760:intron | 40.0% |
| AGAGAGAGAATCTGTTGATG+AGG | - | chr3_4:45478660-45478679 | Msa0502760:intron | 40.0% | |
| !! | TTTTGCTTTTCCTCCACAGC+AGG | - | chr3_4:45476045-45476064 | Msa0502760:CDS | 45.0% |
| GCTTTCTATCTTCAGCCACA+GGG | + | chr3_4:45476083-45476102 | None:intergenic | 45.0% | |
| TGCTTTCTATCTTCAGCCAC+AGG | + | chr3_4:45476084-45476103 | None:intergenic | 45.0% | |
| TGTGGCTGAAGATAGAAAGC+AGG | - | chr3_4:45476083-45476102 | Msa0502760:CDS | 45.0% | |
| AAAGCAGGCCAAAGTTGTTG+TGG | - | chr3_4:45476098-45476117 | Msa0502760:CDS | 45.0% | |
| TCATCATCACTCCGCTTAGA+AGG | + | chr3_4:45476162-45476181 | None:intergenic | 45.0% | |
| TAGAGCTGAACCCCAAGAAT+GGG | + | chr3_4:45476331-45476350 | None:intergenic | 45.0% | |
| ATAGAGCTGAACCCCAAGAA+TGG | + | chr3_4:45476332-45476351 | None:intergenic | 45.0% | |
| ! | GCTACACGAATTGGAGCATT+AGG | + | chr3_4:45476602-45476621 | None:intergenic | 45.0% |
| TTGCTCAGTTCAAGTCTCAG+GGG | - | chr3_4:45476786-45476805 | Msa0502760:intron | 45.0% | |
| ACATTCAGCATTGTGCCAAC+AGG | - | chr3_4:45476851-45476870 | Msa0502760:intron | 45.0% | |
| TTGTGCCAACAGGTGCAATA+AGG | - | chr3_4:45476861-45476880 | Msa0502760:intron | 45.0% | |
| CAGGAACAAGAACAGCGAAT+AGG | + | chr3_4:45476919-45476938 | None:intergenic | 45.0% | |
| !! | GCTGCTCCATTTGTTTCTGA+TGG | - | chr3_4:45477080-45477099 | Msa0502760:intron | 45.0% |
| TTTCAGTGGTGAAGGAATCC+CGG | - | chr3_4:45477221-45477240 | Msa0502760:CDS | 45.0% | |
| TACGTACAGTGAAAACGTGC+AGG | - | chr3_4:45477296-45477315 | Msa0502760:intron | 45.0% | |
| TAACTGTTATTCCACTGGCG+GGG | - | chr3_4:45477392-45477411 | Msa0502760:CDS | 45.0% | |
| TGGTCCACATACACACTAGA+TGG | + | chr3_4:45477761-45477780 | None:intergenic | 45.0% | |
| ! | ACCAGTGATTCTTTTGCCCT+AGG | - | chr3_4:45477777-45477796 | Msa0502760:intron | 45.0% |
| ACCTAGGGCAAAAGAATCAC+TGG | + | chr3_4:45477781-45477800 | None:intergenic | 45.0% | |
| AACATTACTTAGCGCCTGGA+AGG | + | chr3_4:45477987-45478006 | None:intergenic | 45.0% | |
| AGACAACATTACTTAGCGCC+TGG | + | chr3_4:45477991-45478010 | None:intergenic | 45.0% | |
| ! | GGACTTGAACACGCTATTTC+TGG | - | chr3_4:45478202-45478221 | Msa0502760:CDS | 45.0% |
| ! | GGTGAAGCCTGATGATGATT+TGG | - | chr3_4:45478240-45478259 | Msa0502760:CDS | 45.0% |
| TATAGGTCCAGTGCATACGA+AGG | - | chr3_4:45478426-45478445 | Msa0502760:CDS | 45.0% | |
| ATCACATCCTTCGTATGCAC+TGG | + | chr3_4:45478436-45478455 | None:intergenic | 45.0% | |
| GCATACGAAGGATGTGATGA+AGG | - | chr3_4:45478438-45478457 | Msa0502760:CDS | 45.0% | |
| ATGAAGGCAGGTGTAATGCT+TGG | - | chr3_4:45478454-45478473 | Msa0502760:CDS | 45.0% | |
| !! | TGCAAGTTGGCTAGCTTCAA+GGG | + | chr3_4:45478527-45478546 | None:intergenic | 45.0% |
| AGGAAAAAATTCGCACACCC+AGG | + | chr3_4:45478555-45478574 | None:intergenic | 45.0% | |
| GGATTACATGGACGGCATTA+AGG | - | chr3_4:45478609-45478628 | Msa0502760:intron | 45.0% | |
| ! | GGCTTACATGGACTACGTTA+AGG | - | chr3_4:45478630-45478649 | Msa0502760:intron | 45.0% |
| GTTGGAAATAGCACCTGCTG+TGG | + | chr3_4:45476061-45476080 | None:intergenic | 50.0% | |
| !! | AGGTGCTATTTCCAACCCTG+TGG | - | chr3_4:45476065-45476084 | Msa0502760:CDS | 50.0% |
| TCTATCTTCAGCCACAGGGT+TGG | + | chr3_4:45476079-45476098 | None:intergenic | 50.0% | |
| GGCCAAAGTTGTTGTGGTTG+AGG | - | chr3_4:45476104-45476123 | Msa0502760:CDS | 50.0% | |
| AAGGCCCAACAGACATGAGT+TGG | + | chr3_4:45476143-45476162 | None:intergenic | 50.0% | |
| TGTCTGTTGGGCCTTCTAAG+CGG | - | chr3_4:45476148-45476167 | Msa0502760:CDS | 50.0% | |
| AGGTGGATATGATTCCTCGC+TGG | - | chr3_4:45476567-45476586 | Msa0502760:intron | 50.0% | |
| TTAGGACATGCTTTCCAGCG+AGG | + | chr3_4:45476584-45476603 | None:intergenic | 50.0% | |
| GTTCAAGTCCCTGCGATAAC+AGG | + | chr3_4:45478192-45478211 | None:intergenic | 50.0% | |
| AAAAGCGGCCTTCGAAGATG+TGG | - | chr3_4:45478273-45478292 | Msa0502760:CDS | 50.0% | |
| TTGAGAGGGATCGACAGTAG+TGG | - | chr3_4:45478304-45478323 | Msa0502760:CDS | 50.0% | |
| !! | TGGTGATGGCGTTTATGTCC+AGG | - | chr3_4:45478324-45478343 | Msa0502760:CDS | 50.0% |
| ATGAGCTAGGTGTAGATGCC+TGG | + | chr3_4:45478345-45478364 | None:intergenic | 50.0% | |
| GGCATCTACACCTAGCTCAT+TGG | - | chr3_4:45478345-45478364 | Msa0502760:CDS | 50.0% | |
| ACGAAGGATGTGATGAAGGC+AGG | - | chr3_4:45478442-45478461 | Msa0502760:CDS | 50.0% | |
| !! | CTGCAAGTTGGCTAGCTTCA+AGG | + | chr3_4:45478528-45478547 | None:intergenic | 50.0% |
| TAGCCAACTTGCAGATGACC+TGG | - | chr3_4:45478534-45478553 | Msa0502760:CDS | 50.0% | |
| AGCCAACTTGCAGATGACCT+GGG | - | chr3_4:45478535-45478554 | Msa0502760:CDS | 50.0% | |
| GGACGGCATTAAGGCTTACA+TGG | - | chr3_4:45478618-45478637 | Msa0502760:intron | 50.0% | |
| TGAGGAAGTCTTCCCATGCA+TGG | - | chr3_4:45478678-45478697 | Msa0502760:intron | 50.0% | |
| GGAAATAGCACCTGCTGTGG+AGG | + | chr3_4:45476058-45476077 | None:intergenic | 55.0% | |
| GGGCATCAAGATCATTGCCC+AGG | - | chr3_4:45478057-45478076 | Msa0502760:CDS | 55.0% | |
| GGGATCGACAGTAGTGGTGA+TGG | - | chr3_4:45478310-45478329 | Msa0502760:CDS | 55.0% | |
| CACCCAGGTCATCTGCAAGT+TGG | + | chr3_4:45478540-45478559 | None:intergenic | 55.0% | |
| AGTACACTGGTCCCCGCCAG+TGG | + | chr3_4:45477406-45477425 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 45475944 | 45478720 | 45475944 | ID=Msa0502760;Name=Msa0502760 |
| chr3_4 | mRNA | 45475944 | 45478720 | 45475944 | ID=Msa0502760-mRNA-1;Parent=Msa0502760;Name=Msa0502760-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.88|1|1|9|0|497 |
| chr3_4 | exon | 45478690 | 45478720 | 45478690 | ID=Msa0502760-mRNA-1:exon:9659;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45478194 | 45478600 | 45478194 | ID=Msa0502760-mRNA-1:exon:9658;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45477988 | 45478095 | 45477988 | ID=Msa0502760-mRNA-1:exon:9657;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45477782 | 45477882 | 45477782 | ID=Msa0502760-mRNA-1:exon:9656;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45477347 | 45477437 | 45477347 | ID=Msa0502760-mRNA-1:exon:9655;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45477134 | 45477244 | 45477134 | ID=Msa0502760-mRNA-1:exon:9654;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45476994 | 45477059 | 45476994 | ID=Msa0502760-mRNA-1:exon:9653;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45476586 | 45476645 | 45476586 | ID=Msa0502760-mRNA-1:exon:9652;Parent=Msa0502760-mRNA-1 |
| chr3_4 | exon | 45475944 | 45476462 | 45475944 | ID=Msa0502760-mRNA-1:exon:9651;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45478690 | 45478720 | 45478690 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45478194 | 45478600 | 45478194 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45477988 | 45478095 | 45477988 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45477782 | 45477882 | 45477782 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45477347 | 45477437 | 45477347 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45477134 | 45477244 | 45477134 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45476994 | 45477059 | 45476994 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45476586 | 45476645 | 45476586 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| chr3_4 | CDS | 45475944 | 45476462 | 45475944 | ID=Msa0502760-mRNA-1:cds;Parent=Msa0502760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
