AlfalfaGEDB | Msa0724950

M. sativa cultivar zhongmu-4 / Msa0724950

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030957 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724950	XP_003613630.1	99.024	410	4	0	1	410	1	410	0.0	839

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724950	sp\|O49840\|PBL3_ARATH	71.127	426	105	4	1	409	1	425	0.0	607

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724950	Q2HTW4	99.024	410	4	0	1	410	1	410	0.0	839

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003560	Msa0724950	0.824216	9.100608e-54	-8.615850e-47
Msa0038020	Msa0724950	0.851392	9.146868e-61	-8.615850e-47
Msa0076700	Msa0724950	0.822638	2.128049e-53	-8.615850e-47
Msa0085720	Msa0724950	0.894684	1.955254e-75	-8.615850e-47
Msa0090390	Msa0724950	0.804843	1.778199e-49	-8.615850e-47
Msa0092440	Msa0724950	0.814139	1.793343e-51	-8.615850e-47
Msa0108850	Msa0724950	0.829017	6.511041e-55	-8.615850e-47
Msa0124550	Msa0724950	0.828696	7.787207e-55	-8.615850e-47
Msa0130520	Msa0724950	0.826454	2.688486e-54	-8.615850e-47
Msa0132240	Msa0724950	0.840177	1.017320e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724950	MtrunA17_Chr5g0416311	99.024	410	4	0	1	410	1	410	0.0	839
Msa0724950	MtrunA17_Chr4g0060531	65.039	389	126	5	1	381	1	387	0.0	528
Msa0724950	MtrunA17_Chr2g0328171	59.596	396	142	3	1	394	1	380	8.95e-174	491
Msa0724950	MtrunA17_Chr7g0238671	63.415	369	130	2	1	367	1	366	1.90e-169	480
Msa0724950	MtrunA17_Chr5g0435211	60.440	364	139	3	1	361	1	362	1.32e-165	471
Msa0724950	MtrunA17_Chr5g0441021	54.567	427	157	6	1	410	1	407	9.29e-161	458
Msa0724950	MtrunA17_Chr7g0216551	58.424	368	145	2	1	360	41	408	8.17e-155	446
Msa0724950	MtrunA17_Chr3g0093381	59.497	358	143	2	12	367	43	400	5.21e-154	441
Msa0724950	MtrunA17_Chr5g0416011	59.401	367	136	4	1	356	52	416	1.92e-151	437
Msa0724950	MtrunA17_Chr3g0111631	58.402	363	145	4	1	360	3	362	3.12e-151	434

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0724950	AT2G02800.1	71.127	426	105	4	1	409	1	425	0.0	607
Msa0724950	AT2G02800.2	71.127	426	105	4	1	409	1	425	0.0	607
Msa0724950	AT1G14370.1	70.423	426	108	5	1	409	1	425	0.0	590
Msa0724950	AT1G69790.1	71.739	368	94	3	1	360	1	366	0.0	544
Msa0724950	AT1G26970.1	64.833	418	131	6	1	409	1	411	0.0	534
Msa0724950	AT1G69790.2	71.508	358	96	3	5	360	2	355	0.0	531
Msa0724950	AT1G07570.1	64.305	367	121	3	1	365	1	359	1.18e-173	491
Msa0724950	AT1G07570.5	64.305	367	121	3	1	365	1	359	1.18e-173	491
Msa0724950	AT1G07570.2	64.305	367	121	3	1	365	1	359	1.18e-173	491
Msa0724950	AT5G02290.2	60.104	386	144	2	1	384	1	378	2.82e-171	484

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Find 209 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGGAATGAAGAACT+TGG	0.529480	5_1:-24177900	Msa0724950:three_prime_UTR
AAAATGAACAATACTCCGTT+AGG	0.472779	5_1:-24177782	Msa0724950:three_prime_UTR
AAACGTGGAATGAAGAACTT+GGG	0.613512	5_1:-24177899	Msa0724950:three_prime_UTR
AAAGCTGTATACATCACTCT+TGG	0.548445	5_1:+24178891	None:intergenic
AAATGAACATGTCATGTGAA+AGG	0.582141	5_1:+24181935	None:intergenic
AACAACGGACAGCCGTACAC+GGG	0.617103	5_1:+24177617	None:intergenic
AACAATGTACTCCATTAAGT+GGG	0.570395	5_1:-24178269	Msa0724950:three_prime_UTR
AACCACTGTCTTGGTCAATA+AGG	0.357178	5_1:-24179591	Msa0724950:CDS
AACGGACAGCCGTACACGGG+TGG	0.558049	5_1:+24177620	None:intergenic
AACTTACCAACCACTCTTTA+TGG	0.153876	5_1:+24180253	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGTACACAACAGAAAAAG+AGG	+	chr5_1:24177210-24177229	None:intergenic	30.0%
TGTACTTATAACAGTTGAAG+TGG	-	chr5_1:24177222-24177241	Msa0724950:three_prime_UTR	30.0%
ACATTAAGAACACAAGATGA+TGG	+	chr5_1:24177430-24177449	None:intergenic	30.0%
TTGTGATCATTATGTTCTTG+TGG	-	chr5_1:24177477-24177496	Msa0724950:three_prime_UTR	30.0%
AAACCAAACCAAACCAAAAT+TGG	+	chr5_1:24177625-24177644	None:intergenic	30.0%
GATAAGTACTTCAATAGAAG+AGG	+	chr5_1:24177919-24177938	None:intergenic	30.0%
TACTTCACTCCTAAAACATT+AGG	+	chr5_1:24177955-24177974	None:intergenic	30.0%
GATGGAATTGTTAAACTAGA+AGG	+	chr5_1:24178488-24178507	None:intergenic	30.0%
GCAAAGAATTCAAACTATTG+AGG	+	chr5_1:24178826-24178845	None:intergenic	30.0%
TTCCCCAAAAGACAAATATA+TGG	-	chr5_1:24179073-24179092	Msa0724950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	24177093	24181954	24177093	ID=Msa0724950;Name=Msa0724950
chr5_1	mRNA	24177093	24181954	24177093	ID=Msa0724950-mRNA-1;Parent=Msa0724950;Name=Msa0724950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=197\|1\|1\|1\|1\|1\|6\|1381\|410
chr5_1	exon	24177093	24178925	24177093	ID=Msa0724950-mRNA-1:exon:8867;Parent=Msa0724950-mRNA-1
chr5_1	exon	24179267	24179390	24179267	ID=Msa0724950-mRNA-1:exon:8866;Parent=Msa0724950-mRNA-1
chr5_1	exon	24179486	24179622	24179486	ID=Msa0724950-mRNA-1:exon:8865;Parent=Msa0724950-mRNA-1
chr5_1	exon	24179753	24179888	24179753	ID=Msa0724950-mRNA-1:exon:8864;Parent=Msa0724950-mRNA-1
chr5_1	exon	24180260	24180579	24180260	ID=Msa0724950-mRNA-1:exon:8863;Parent=Msa0724950-mRNA-1
chr5_1	exon	24181694	24181954	24181694	ID=Msa0724950-mRNA-1:exon:8862;Parent=Msa0724950-mRNA-1
chr5_1	five_prime_UTR	24181758	24181954	24181758	ID=Msa0724950-mRNA-1:five_prime_utr;Parent=Msa0724950-mRNA-1
chr5_1	CDS	24181694	24181757	24181694	ID=Msa0724950-mRNA-1:cds;Parent=Msa0724950-mRNA-1
chr5_1	CDS	24180260	24180579	24180260	ID=Msa0724950-mRNA-1:cds;Parent=Msa0724950-mRNA-1
chr5_1	CDS	24179753	24179888	24179753	ID=Msa0724950-mRNA-1:cds;Parent=Msa0724950-mRNA-1
chr5_1	CDS	24179486	24179622	24179486	ID=Msa0724950-mRNA-1:cds;Parent=Msa0724950-mRNA-1
chr5_1	CDS	24179267	24179390	24179267	ID=Msa0724950-mRNA-1:cds;Parent=Msa0724950-mRNA-1
chr5_1	CDS	24178474	24178925	24178474	ID=Msa0724950-mRNA-1:cds;Parent=Msa0724950-mRNA-1
chr5_1	three_prime_UTR	24177093	24178473	24177093	ID=Msa0724950-mRNA-1:three_prime_utr;Parent=Msa0724950-mRNA-1

Gene Sequence

>Msa0724950

ATGGGTAATTGTCTTGATTCTTCTGCTAAAGTTGATGCTGCTCAAAGCTCTAGATCCACTTCTGGAACCTCAAAAACTACTCCTTCTAGTTTAACAATTCCATCATACAGTGACAAAAGCAATTCCTCAAGTCTTCTTCCTACACCAAGGTCTGAGGGTGAAATCTTATCTTCTCCCAATCTTAAAGCATTCTCATTCAATGAGCTGAAAAATGCCACGAGGAATTTTCGTCCCGATAGTCTTCTAGGCGAAGGCGGATTTGGTCATGTTTATAAGGGATGGATCGACGAACACACATTCACAGCTGCAAAACCTGGATCAGGAATGGTTGTTGCTGTTAAAAGACTTAAGCCTGAAGGTTTTCAAGGCCATAAAGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTTCACCATCCTAATCTAGTCAAATTAATTGGTTACTGCTTGGAAGGAGAGAACAGGCTTTTGGTATATGAATTTATGCCTAAAGGGAGCTTAGAGAACCATCTTTTTAGACGAGGACCACAACCACTGTCTTGGTCAATAAGGATGAAAGTAGCTATCGGTGCTGCTAGAGGTCTCTCGTTTCTTCACAATGCAAAATCTCAAGTCATATACCGTGATTTCAAAGCTTCAAACATCCTTTTAGACGCGGAGTTTAATTCTAAACTCTCCGATTTTGGCTTGGCTAAAGCGGGTCCTACCGGTGATAGAACTCATGTGTCTACTCAAGTAGTCGGTACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTCGGCTAACGGCCAAGAGTGATGTATACAGCTTTGGAGTTGTTATGCTTGAACTTTTATCTGGAAGACGAGCCGTTGATAAAACAATAGCTGGCGTGGACCAGAATCTAGTAGACTGGGCAAAACCATATTTAGGCGATAAAAGAAGACTATTTCGGATCATGGATTCAAAATTAGAAGGTCAATATCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCACTACAATGCCTTAACAGAGAAGCTAAGGCAAGGCCTTCAATGACAGAGGTTTTAGCAACTCTAGAACAGATAGAAGCTCCTAAACAAGCATCACGGAATTCCTTATCGGAACATCATAGATTCCATGCTCCGGTCAGAAGGTCTCCTGCACGAAACCGAACGCCTTCAAATGTTACTCCTACTGCATCGCCATTGCCATCTGTCCGGCAATCTCCTCGTGCGCACTAG

Protein sequence

>Msa0724950

MGNCLDSSAKVDAAQSSRSTSGTSKTTPSSLTIPSYSDKSNSSSLLPTPRSEGEILSSPNLKAFSFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEHTFTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSIRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDRTHVSTQVVGTQGYAAPEYVATGRLTAKSDVYSFGVVMLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNREAKARPSMTEVLATLEQIEAPKQASRNSLSEHHRFHAPVRRSPARNRTPSNVTPTASPLPSVRQSPRAH*