Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357750 | XP_003616690.1 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 7.40e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357750 | sp|Q8LBW3|LBD12_ARATH | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 4.52e-57 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357750 | G7K288 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 3.53e-75 | 231 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0357750 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0357750 | Msa0357800 | 0.813251 | 2.813367e-51 | -8.615850e-47 |
| Msa0357750 | Msa0357810 | 0.839613 | 1.426915e-57 | -8.615850e-47 |
| Msa0357750 | Msa0357820 | 0.982460 | 3.769801e-155 | -8.615850e-47 |
| Msa0357750 | Msa0357880 | 0.946591 | 3.448062e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357750 | MtrunA17_Chr5g0437571 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 6.81e-79 | 231 |
| Msa0357750 | MtrunA17_Chr3g0114061 | 64.828 | 145 | 43 | 3 | 11 | 151 | 1 | 141 | 1.11e-60 | 184 |
| Msa0357750 | MtrunA17_Chr3g0106101 | 56.291 | 151 | 55 | 2 | 12 | 151 | 3 | 153 | 1.97e-55 | 172 |
| Msa0357750 | MtrunA17_Chr2g0311601 | 62.500 | 128 | 40 | 1 | 9 | 136 | 6 | 125 | 6.26e-53 | 165 |
| Msa0357750 | MtrunA17_Chr4g0043421 | 64.912 | 114 | 40 | 0 | 9 | 122 | 8 | 121 | 8.22e-51 | 160 |
| Msa0357750 | MtrunA17_Chr4g0030001 | 58.772 | 114 | 46 | 1 | 15 | 127 | 23 | 136 | 3.01e-45 | 146 |
| Msa0357750 | MtrunA17_Chr1g0200201 | 60.360 | 111 | 44 | 0 | 17 | 127 | 73 | 183 | 1.66e-43 | 143 |
| Msa0357750 | MtrunA17_Chr3g0115431 | 61.538 | 104 | 40 | 0 | 13 | 116 | 6 | 109 | 1.72e-42 | 140 |
| Msa0357750 | MtrunA17_Chr5g0438091 | 51.128 | 133 | 58 | 1 | 6 | 131 | 22 | 154 | 2.72e-42 | 139 |
| Msa0357750 | MtrunA17_Chr7g0227511 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 9.56e-41 | 134 |
| Msa0357750 | MtrunA17_Chr3g0117121 | 62.857 | 105 | 39 | 0 | 12 | 116 | 6 | 110 | 1.58e-40 | 134 |
| Msa0357750 | MtrunA17_Chr4g0058651 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 2.58e-40 | 134 |
| Msa0357750 | MtrunA17_Chr6g0449641 | 51.639 | 122 | 59 | 0 | 14 | 135 | 7 | 128 | 3.72e-40 | 132 |
| Msa0357750 | MtrunA17_Chr6g0449651 | 59.223 | 103 | 42 | 0 | 14 | 116 | 65 | 167 | 1.58e-39 | 132 |
| Msa0357750 | MtrunA17_Chr5g0402611 | 52.273 | 132 | 60 | 2 | 12 | 140 | 4 | 135 | 9.68e-39 | 133 |
| Msa0357750 | MtrunA17_Chr3g0129071 | 57.407 | 108 | 46 | 0 | 15 | 122 | 46 | 153 | 3.41e-38 | 130 |
| Msa0357750 | MtrunA17_Chr5g0437401 | 52.033 | 123 | 57 | 1 | 13 | 135 | 8 | 128 | 4.61e-38 | 127 |
| Msa0357750 | MtrunA17_Chr3g0113891 | 59.406 | 101 | 41 | 0 | 13 | 113 | 11 | 111 | 8.73e-38 | 127 |
| Msa0357750 | MtrunA17_Chr7g0225111 | 50.450 | 111 | 55 | 0 | 15 | 125 | 4 | 114 | 1.52e-37 | 124 |
| Msa0357750 | MtrunA17_Chr3g0097221 | 54.286 | 105 | 48 | 0 | 12 | 116 | 3 | 107 | 3.60e-37 | 129 |
| Msa0357750 | MtrunA17_Chr5g0444351 | 48.718 | 117 | 60 | 0 | 17 | 133 | 6 | 122 | 1.23e-36 | 123 |
| Msa0357750 | MtrunA17_Chr8g0353981 | 54.237 | 118 | 52 | 1 | 12 | 129 | 3 | 118 | 1.21e-34 | 120 |
| Msa0357750 | MtrunA17_Chr5g0432451 | 58.824 | 102 | 42 | 0 | 15 | 116 | 42 | 143 | 3.70e-34 | 119 |
| Msa0357750 | MtrunA17_Chr1g0184281 | 52.381 | 105 | 49 | 1 | 12 | 115 | 11 | 115 | 7.37e-34 | 118 |
| Msa0357750 | MtrunA17_Chr5g0435641 | 41.333 | 150 | 78 | 4 | 11 | 153 | 1 | 147 | 3.26e-33 | 115 |
| Msa0357750 | MtrunA17_Chr7g0260971 | 51.429 | 105 | 50 | 1 | 15 | 118 | 13 | 117 | 1.23e-32 | 115 |
| Msa0357750 | MtrunA17_Chr6g0460951 | 39.437 | 142 | 75 | 3 | 15 | 153 | 39 | 172 | 3.44e-31 | 111 |
| Msa0357750 | MtrunA17_Chr7g0261031 | 51.402 | 107 | 50 | 2 | 11 | 115 | 2 | 108 | 6.03e-31 | 111 |
| Msa0357750 | MtrunA17_Chr8g0351721 | 47.934 | 121 | 60 | 2 | 13 | 132 | 15 | 133 | 1.60e-30 | 109 |
| Msa0357750 | MtrunA17_Chr8g0351701 | 53.125 | 96 | 44 | 1 | 16 | 110 | 23 | 118 | 1.93e-30 | 110 |
| Msa0357750 | MtrunA17_Chr8g0374591 | 46.535 | 101 | 54 | 0 | 16 | 116 | 8 | 108 | 3.21e-30 | 106 |
| Msa0357750 | MtrunA17_Chr1g0184271 | 40.714 | 140 | 80 | 2 | 16 | 154 | 12 | 149 | 3.65e-30 | 109 |
| Msa0357750 | MtrunA17_Chr7g0245871 | 50.980 | 102 | 49 | 1 | 16 | 116 | 27 | 128 | 1.25e-29 | 108 |
| Msa0357750 | MtrunA17_Chr8g0374601 | 45.536 | 112 | 59 | 1 | 16 | 127 | 26 | 135 | 1.79e-29 | 108 |
| Msa0357750 | MtrunA17_Chr7g0245861 | 52.688 | 93 | 41 | 2 | 13 | 102 | 9 | 101 | 1.94e-27 | 99.8 |
| Msa0357750 | MtrunA17_Chr6g0460941 | 46.591 | 88 | 46 | 1 | 16 | 102 | 7 | 94 | 3.82e-25 | 92.4 |
| Msa0357750 | MtrunA17_Chr6g0452691 | 37.719 | 114 | 70 | 1 | 11 | 123 | 4 | 117 | 6.60e-25 | 94.4 |
| Msa0357750 | MtrunA17_Chr8g0374581 | 42.478 | 113 | 62 | 2 | 16 | 127 | 8 | 118 | 2.93e-23 | 91.3 |
| Msa0357750 | MtrunA17_Chr6g0452661 | 34.234 | 111 | 72 | 1 | 14 | 123 | 7 | 117 | 3.07e-21 | 86.7 |
| Msa0357750 | MtrunA17_Chr6g0452671 | 31.496 | 127 | 87 | 0 | 17 | 143 | 12 | 138 | 4.04e-21 | 85.1 |
| Msa0357750 | MtrunA17_Chr2g0330201 | 38.000 | 100 | 62 | 0 | 17 | 116 | 20 | 119 | 4.77e-21 | 86.7 |
| Msa0357750 | MtrunA17_Chr4g0059901 | 41.935 | 93 | 54 | 0 | 17 | 109 | 11 | 103 | 6.95e-21 | 85.9 |
| Msa0357750 | MtrunA17_Chr4g0040831 | 37.391 | 115 | 66 | 1 | 17 | 131 | 16 | 124 | 1.55e-20 | 83.6 |
| Msa0357750 | MtrunA17_Chr8g0342351 | 35.000 | 100 | 65 | 0 | 17 | 116 | 13 | 112 | 1.13e-19 | 82.4 |
| Msa0357750 | MtrunA17_Chr2g0326051 | 55.224 | 67 | 30 | 0 | 61 | 127 | 5 | 71 | 2.30e-19 | 78.6 |
| Msa0357750 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 15 | 62 | 32 | 79 | 9.53e-19 | 75.9 |
| Msa0357750 | MtrunA17_Chr4g0055441 | 32.456 | 114 | 76 | 1 | 17 | 129 | 3 | 116 | 9.91e-19 | 77.8 |
| Msa0357750 | MtrunA17_Chr4g0046201 | 37.634 | 93 | 58 | 0 | 11 | 103 | 1 | 93 | 1.30e-18 | 79.7 |
| Msa0357750 | MtrunA17_Chr5g0439111 | 40.964 | 83 | 48 | 1 | 14 | 95 | 7 | 89 | 2.07e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357750 | AT2G30130.1 | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 4.60e-58 | 179 |
| Msa0357750 | AT2G28500.1 | 50.714 | 140 | 68 | 1 | 15 | 154 | 54 | 192 | 5.09e-48 | 155 |
| Msa0357750 | AT1G07900.1 | 63.889 | 108 | 37 | 1 | 15 | 122 | 32 | 137 | 1.06e-47 | 153 |
| Msa0357750 | AT1G31320.1 | 59.350 | 123 | 50 | 0 | 7 | 129 | 4 | 126 | 5.39e-45 | 145 |
| Msa0357750 | AT1G16530.1 | 60.748 | 107 | 41 | 1 | 15 | 120 | 13 | 119 | 3.27e-43 | 140 |
| Msa0357750 | AT5G63090.4 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357750 | AT5G63090.3 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357750 | AT5G63090.2 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357750 | AT5G63090.1 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357750 | AT3G27650.1 | 60.194 | 103 | 41 | 0 | 14 | 116 | 37 | 139 | 4.72e-40 | 132 |
| Msa0357750 | AT3G26620.1 | 49.600 | 125 | 54 | 1 | 17 | 141 | 6 | 121 | 8.39e-40 | 130 |
| Msa0357750 | AT3G26660.1 | 57.000 | 100 | 43 | 0 | 17 | 116 | 6 | 105 | 2.67e-39 | 129 |
| Msa0357750 | AT2G30340.1 | 52.941 | 119 | 56 | 0 | 15 | 133 | 51 | 169 | 1.32e-38 | 132 |
| Msa0357750 | AT2G30340.2 | 52.941 | 119 | 56 | 0 | 15 | 133 | 52 | 170 | 1.35e-38 | 132 |
| Msa0357750 | AT2G23660.2 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
| Msa0357750 | AT2G23660.3 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
| Msa0357750 | AT2G23660.1 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
| Msa0357750 | AT3G11090.1 | 54.310 | 116 | 52 | 1 | 14 | 128 | 9 | 124 | 1.65e-37 | 126 |
| Msa0357750 | AT5G66870.1 | 52.459 | 122 | 57 | 1 | 12 | 132 | 3 | 124 | 6.36e-37 | 129 |
| Msa0357750 | AT1G65620.1 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357750 | AT1G65620.4 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357750 | AT1G65620.3 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357750 | AT1G65620.5 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357750 | AT1G65620.2 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357750 | AT2G40470.2 | 60.784 | 102 | 40 | 0 | 15 | 116 | 19 | 120 | 3.51e-35 | 121 |
| Msa0357750 | AT2G40470.1 | 60.784 | 102 | 40 | 0 | 15 | 116 | 44 | 145 | 5.37e-35 | 122 |
| Msa0357750 | AT4G00210.1 | 48.031 | 127 | 55 | 3 | 11 | 131 | 1 | 122 | 1.36e-33 | 118 |
| Msa0357750 | AT3G03760.1 | 52.427 | 103 | 48 | 1 | 15 | 116 | 50 | 152 | 3.92e-33 | 118 |
| Msa0357750 | AT2G42430.1 | 53.846 | 104 | 47 | 1 | 14 | 116 | 13 | 116 | 4.38e-33 | 117 |
| Msa0357750 | AT3G50510.1 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.33e-31 | 112 |
| Msa0357750 | AT3G50510.2 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.33e-31 | 112 |
| Msa0357750 | AT2G45410.1 | 45.238 | 126 | 65 | 2 | 19 | 140 | 19 | 144 | 2.15e-31 | 111 |
| Msa0357750 | AT2G42440.1 | 43.750 | 128 | 69 | 3 | 11 | 135 | 1 | 128 | 6.27e-31 | 112 |
| Msa0357750 | AT2G31310.1 | 40.714 | 140 | 73 | 3 | 11 | 140 | 1 | 140 | 1.74e-29 | 106 |
| Msa0357750 | AT3G58190.1 | 49.495 | 99 | 49 | 1 | 16 | 113 | 11 | 109 | 1.77e-29 | 107 |
| Msa0357750 | AT5G06080.1 | 41.600 | 125 | 69 | 2 | 12 | 132 | 3 | 127 | 1.07e-27 | 101 |
| Msa0357750 | AT2G45420.1 | 46.154 | 104 | 55 | 1 | 19 | 121 | 40 | 143 | 4.43e-27 | 102 |
| Msa0357750 | AT4G00220.1 | 48.077 | 104 | 53 | 1 | 19 | 121 | 20 | 123 | 5.20e-27 | 101 |
| Msa0357750 | AT5G35900.1 | 40.777 | 103 | 61 | 0 | 17 | 119 | 6 | 108 | 4.52e-24 | 93.2 |
| Msa0357750 | AT3G13850.1 | 36.800 | 125 | 65 | 3 | 17 | 127 | 37 | 161 | 2.87e-23 | 92.4 |
| Msa0357750 | AT1G72980.1 | 41.176 | 102 | 60 | 0 | 15 | 116 | 12 | 113 | 1.18e-22 | 89.7 |
| Msa0357750 | AT3G47870.1 | 38.889 | 90 | 55 | 0 | 10 | 99 | 30 | 119 | 2.19e-18 | 80.5 |
| Msa0357750 | AT1G06280.1 | 45.455 | 77 | 42 | 0 | 17 | 93 | 25 | 101 | 2.69e-18 | 78.2 |
| Msa0357750 | AT2G19820.1 | 38.542 | 96 | 58 | 1 | 15 | 109 | 11 | 106 | 1.65e-17 | 73.9 |
| Msa0357750 | AT4G22700.1 | 40.659 | 91 | 52 | 2 | 17 | 106 | 6 | 95 | 2.89e-15 | 70.1 |
| Msa0357750 | AT5G15060.1 | 41.892 | 74 | 39 | 2 | 17 | 87 | 18 | 90 | 8.57e-13 | 62.4 |
| Msa0357750 | AT1G36000.1 | 29.348 | 92 | 65 | 0 | 11 | 102 | 4 | 95 | 1.19e-12 | 61.6 |
Find 22 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAACTACGACAAACTTT+TGG | 0.258263 | 3_1:-41411156 | None:intergenic |
| AGATTGAGTGACCCAGTTTA+TGG | 0.284882 | 3_1:+41413814 | Msa0357750:CDS |
| AACAAGAAATATCATAATTA+AGG | 0.293198 | 3_1:-41414011 | None:intergenic |
| GGAGCAAAGATGCAATCTTT+TGG | 0.343297 | 3_1:-41411112 | None:intergenic |
| GCTCCAGCACAACCATAAAC+TGG | 0.357617 | 3_1:-41413826 | None:intergenic |
| CATATATCACTTGCAAAATC+AGG | 0.363361 | 3_1:+41413849 | Msa0357750:CDS |
| GCACCTTCCCTTTGCTGAAT+CGG | 0.373246 | 3_1:-41413760 | None:intergenic |
| AGGTATTGAGCGAGTTCATC+TGG | 0.379557 | 3_1:-41413991 | None:intergenic |
| CAACGTTGGCAGAATGTTGC+AGG | 0.398392 | 3_1:+41411195 | Msa0357750:CDS |
| GGTTCAAGAGAAGGAAAATA+AGG | 0.429065 | 3_1:-41411133 | None:intergenic |
| TCTTGGTTGAATTGTGGTGC+TGG | 0.452174 | 3_1:-41413949 | None:intergenic |
| GACCCAGTTTATGGTTGTGC+TGG | 0.452179 | 3_1:+41413823 | Msa0357750:CDS |
| TAAAGTAAGATGTGTGATCT+TGG | 0.468213 | 3_1:-41413966 | None:intergenic |
| GGATCTTCCGATTCAGCAAA+GGG | 0.503129 | 3_1:+41413753 | Msa0357750:intron |
| TTGCTCGAGCAACTGCAAGT+TGG | 0.520454 | 3_1:-41413888 | None:intergenic |
| CTCCAGCACAACCATAAACT+GGG | 0.573541 | 3_1:-41413825 | None:intergenic |
| GTGTGATCTTGGTTGAATTG+TGG | 0.577677 | 3_1:-41413955 | None:intergenic |
| AGGATCTTCCGATTCAGCAA+AGG | 0.581668 | 3_1:+41413752 | Msa0357750:intron |
| AAAGTTTGTCGTAGTTCACA+AGG | 0.596548 | 3_1:+41411159 | Msa0357750:CDS |
| AGAATCTTGCATGAAGCACA+TGG | 0.616501 | 3_1:-41411076 | None:intergenic |
| CTTCCGATTCAGCAAAGGGA+AGG | 0.633097 | 3_1:+41413757 | Msa0357750:CDS |
| GAAAAGAAAATTGTAAACAG+AGG | 0.681415 | 3_1:-41411028 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTATTTTATAATTAT+CGG | + | chr3_1:41411806-41411825 | Msa0357750:intron | 0.0% |
| !! | AATTTAAAAAAATCATCAAA+CGG | + | chr3_1:41413110-41413129 | Msa0357750:intron | 10.0% |
| !! | TAAATAATTAACCATTAAAA+AGG | - | chr3_1:41413474-41413493 | None:intergenic | 10.0% |
| !!! | ATAAGTGTTTATTATTTTTT+AGG | + | chr3_1:41413516-41413535 | Msa0357750:intron | 10.0% |
| !!! | TAAGTGTTTATTATTTTTTA+GGG | + | chr3_1:41413517-41413536 | Msa0357750:intron | 10.0% |
| !! | TTAATCATCTAAAAAGTAAA+TGG | - | chr3_1:41411244-41411263 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAGACATATTTT+AGG | + | chr3_1:41411425-41411444 | Msa0357750:intron | 15.0% |
| !!! | TCTTTTATGTTTTTTATATC+CGG | - | chr3_1:41411630-41411649 | None:intergenic | 15.0% |
| !! | GTATTAAATACAAATTCATA+AGG | - | chr3_1:41411657-41411676 | None:intergenic | 15.0% |
| !! | GAATAAAAAAAACTTAGAAA+AGG | - | chr3_1:41411686-41411705 | None:intergenic | 15.0% |
| !! | ATTATATAAGCAACTAAAAA+GGG | - | chr3_1:41411786-41411805 | None:intergenic | 15.0% |
| !! | TATTATATAAGCAACTAAAA+AGG | - | chr3_1:41411787-41411806 | None:intergenic | 15.0% |
| !! | TTGATAAAATTGAGAAATAT+AGG | - | chr3_1:41412425-41412444 | None:intergenic | 15.0% |
| !!! | TTTTTAATTCATTCACAAAA+TGG | + | chr3_1:41413026-41413045 | Msa0357750:intron | 15.0% |
| !!! | GTTTGATGATTTTTTTAAAT+TGG | - | chr3_1:41413111-41413130 | None:intergenic | 15.0% |
| !!! | AAGTGTTTATTATTTTTTAG+GGG | + | chr3_1:41413518-41413537 | Msa0357750:intron | 15.0% |
| !! | AACAAGAAATATCATAATTA+AGG | - | chr3_1:41414014-41414033 | None:intergenic | 15.0% |
| !! | CAATATAAACAACTAATCTT+GGG | - | chr3_1:41411296-41411315 | None:intergenic | 20.0% |
| !! | ACAATATAAACAACTAATCT+TGG | - | chr3_1:41411297-41411316 | None:intergenic | 20.0% |
| !!! | TAGTTTGTGAATAAAATGTT+TGG | + | chr3_1:41411362-41411381 | Msa0357750:intron | 20.0% |
| !!! | ATTTTCAGAAAAGTAACTAT+TGG | + | chr3_1:41411504-41411523 | Msa0357750:intron | 20.0% |
| !!! | ATCGGATTTTAAAATATAGT+TGG | + | chr3_1:41411824-41411843 | Msa0357750:intron | 20.0% |
| !!! | GTCATCAAATTTATATGTTT+TGG | - | chr3_1:41411952-41411971 | None:intergenic | 20.0% |
| !!! | ATTTTTGGAAAAAAAACACA+GGG | - | chr3_1:41412006-41412025 | None:intergenic | 20.0% |
| !!! | TCAGATTTTAATATCTGAAT+AGG | + | chr3_1:41412039-41412058 | Msa0357750:intron | 20.0% |
| !!! | TTTTACTGATTTTATTTCCA+AGG | - | chr3_1:41412318-41412337 | None:intergenic | 20.0% |
| !!! | TTTTGAACATATTTGTAACA+TGG | - | chr3_1:41412560-41412579 | None:intergenic | 20.0% |
| !! | TCGGATTATAAAATACAAAT+TGG | + | chr3_1:41412704-41412723 | Msa0357750:intron | 20.0% |
| !!! | TTTAAAATCTAACAATCTCA+AGG | + | chr3_1:41412776-41412795 | Msa0357750:intron | 20.0% |
| !! | TTAAAATCTAACAATCTCAA+GGG | + | chr3_1:41412777-41412796 | Msa0357750:intron | 20.0% |
| !! | TAGTCTAAATTGATTGAATA+TGG | + | chr3_1:41412857-41412876 | Msa0357750:intron | 20.0% |
| !! | TGAATGAATTAAAAAGTGAT+TGG | - | chr3_1:41413021-41413040 | None:intergenic | 20.0% |
| !!! | AAACTGATTTAAAAAGTGAT+TGG | - | chr3_1:41413086-41413105 | None:intergenic | 20.0% |
| !!! | TATTTAGGAAATTGCTTTTT+AGG | - | chr3_1:41413175-41413194 | None:intergenic | 20.0% |
| !! | AGCAATTTCCTAAATATTTA+TGG | + | chr3_1:41413179-41413198 | Msa0357750:intron | 20.0% |
| !! | GCAATTTCCTAAATATTTAT+GGG | + | chr3_1:41413180-41413199 | Msa0357750:intron | 20.0% |
| !! | TCATTAACCCATAAATATTT+AGG | - | chr3_1:41413190-41413209 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTTGCAATGAAA+AGG | + | chr3_1:41413418-41413437 | Msa0357750:intron | 20.0% |
| !!! | ACGATTTAAAACCTTTTTAA+TGG | + | chr3_1:41413460-41413479 | Msa0357750:intron | 20.0% |
| !! | TTTTCGAAGAAAAAAATGAG+TGG | + | chr3_1:41411046-41411065 | Msa0357750:CDS | 25.0% |
| !! | TTTTCTTTTGGTCTCAAAAA+AGG | - | chr3_1:41411388-41411407 | None:intergenic | 25.0% |
| !! | ATATCGGATCACAATTTTTA+TGG | - | chr3_1:41411567-41411586 | None:intergenic | 25.0% |
| ! | ATAAAAATTGTGATCCGATA+TGG | + | chr3_1:41411566-41411585 | Msa0357750:intron | 25.0% |
| ! | TATCAAATTGTTCACCATAT+CGG | - | chr3_1:41411583-41411602 | None:intergenic | 25.0% |
| ! | ATACTAAGCAAATCATGATT+GGG | - | chr3_1:41411928-41411947 | None:intergenic | 25.0% |
| ! | TATACTAAGCAAATCATGAT+TGG | - | chr3_1:41411929-41411948 | None:intergenic | 25.0% |
| !!! | CATTTTTGGAAAAAAAACAC+AGG | - | chr3_1:41412007-41412026 | None:intergenic | 25.0% |
| ! | ATTAAAATCTGAATTGCACA+GGG | - | chr3_1:41412031-41412050 | None:intergenic | 25.0% |
| ! | TATTAAAATCTGAATTGCAC+AGG | - | chr3_1:41412032-41412051 | None:intergenic | 25.0% |
| ! | TATATAATCTGAACTCAGTT+AGG | + | chr3_1:41412150-41412169 | Msa0357750:intron | 25.0% |
| !! | ATGGATCATATAACATTTTC+TGG | + | chr3_1:41412173-41412192 | Msa0357750:intron | 25.0% |
| ! | AATAACTATTCATGAGAGTT+AGG | - | chr3_1:41412213-41412232 | None:intergenic | 25.0% |
| !!! | TAACATGGATAGTCATTTTA+AGG | - | chr3_1:41412545-41412564 | None:intergenic | 25.0% |
| !! | ATTTTCGGAAGGAAAAAAAT+AGG | + | chr3_1:41412801-41412820 | Msa0357750:intron | 25.0% |
| !! | TTTTCGGAAGGAAAAAAATA+GGG | + | chr3_1:41412802-41412821 | Msa0357750:intron | 25.0% |
| ! | CTAAATTGATTGAATATGGT+TGG | + | chr3_1:41412861-41412880 | Msa0357750:intron | 25.0% |
| ! | GACTCAACTCATAAAAATTT+GGG | + | chr3_1:41412935-41412954 | Msa0357750:intron | 25.0% |
| !!! | TTGATTTTTGAGCAATTAGA+GGG | - | chr3_1:41412977-41412996 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTGAGCAATTAG+AGG | - | chr3_1:41412978-41412997 | None:intergenic | 25.0% |
| !! | ATATTTATGGGTTAATGAGT+CGG | + | chr3_1:41413192-41413211 | Msa0357750:intron | 25.0% |
| !!! | TGTTGTACTTTTTTACTATG+CGG | - | chr3_1:41413611-41413630 | None:intergenic | 25.0% |
| !! | AAAAAGTACAACAATGTTGT+TGG | + | chr3_1:41413618-41413637 | Msa0357750:intron | 25.0% |
| ! | GCAATTAGCTATGAAGTTTT+AGG | - | chr3_1:41411458-41411477 | None:intergenic | 30.0% |
| ! | TATTGGTTGTTACCACTTAA+TGG | + | chr3_1:41411521-41411540 | Msa0357750:intron | 30.0% |
| ATTGGTTGTTACCACTTAAT+GGG | + | chr3_1:41411522-41411541 | Msa0357750:intron | 30.0% | |
| !!! | TGTTTTTTATATCCGGAAGT+TGG | - | chr3_1:41411623-41411642 | None:intergenic | 30.0% |
| TTAAAATCTGAATTGCACAG+GGG | - | chr3_1:41412030-41412049 | None:intergenic | 30.0% | |
| ! | CTGTTTTATCCCTTGAAATA+GGG | - | chr3_1:41412094-41412113 | None:intergenic | 30.0% |
| ! | ACTGTTTTATCCCTTGAAAT+AGG | - | chr3_1:41412095-41412114 | None:intergenic | 30.0% |
| TATATAATCCGAACTCAGTT+AGG | + | chr3_1:41412121-41412140 | Msa0357750:intron | 30.0% | |
| ATTATTCTTCCTAACTCTCA+TGG | - | chr3_1:41412517-41412536 | None:intergenic | 30.0% | |
| TCCGAAAACCTCAAAAAATA+GGG | - | chr3_1:41412689-41412708 | None:intergenic | 30.0% | |
| ATCCGAAAACCTCAAAAAAT+AGG | - | chr3_1:41412690-41412709 | None:intergenic | 30.0% | |
| ! | TGAGTTTTTCCTTTGTAATG+AGG | - | chr3_1:41412748-41412767 | None:intergenic | 30.0% |
| TACAAAGGAAAAACTCAGTT+CGG | + | chr3_1:41412751-41412770 | Msa0357750:intron | 30.0% | |
| CGACTCAACTCATAAAAATT+TGG | + | chr3_1:41412934-41412953 | Msa0357750:intron | 30.0% | |
| AAATTTGGGTGTAGTTCATT+AGG | + | chr3_1:41412949-41412968 | Msa0357750:intron | 30.0% | |
| !! | TAGGGGTCAAATTTTGATAA+GGG | - | chr3_1:41413319-41413338 | None:intergenic | 30.0% |
| !! | TTAGGGGTCAAATTTTGATA+AGG | - | chr3_1:41413320-41413339 | None:intergenic | 30.0% |
| GTAATGTATTAAAGGCTTAG+GGG | - | chr3_1:41413336-41413355 | None:intergenic | 30.0% | |
| GGTAATGTATTAAAGGCTTA+GGG | - | chr3_1:41413337-41413356 | None:intergenic | 30.0% | |
| GAAAAGGATTACAATAAGAG+AGG | + | chr3_1:41413434-41413453 | Msa0357750:intron | 30.0% | |
| ! | TTTTACTATGCGGAAAAGTA+AGG | - | chr3_1:41413601-41413620 | None:intergenic | 30.0% |
| AAGAACACAATGATTGATCA+AGG | - | chr3_1:41413669-41413688 | None:intergenic | 30.0% | |
| ! | TTTTTCTCATACAATGCATC+AGG | + | chr3_1:41413732-41413751 | Msa0357750:intron | 30.0% |
| ! | CTGATTTTGCAAGTGATATA+TGG | - | chr3_1:41413851-41413870 | None:intergenic | 30.0% |
| CATATATCACTTGCAAAATC+AGG | + | chr3_1:41413849-41413868 | Msa0357750:CDS | 30.0% | |
| TAAAGTAAGATGTGTGATCT+TGG | - | chr3_1:41413969-41413988 | None:intergenic | 30.0% | |
| ! | GAGCAAAGATGCAATCTTTT+GGG | - | chr3_1:41411114-41411133 | None:intergenic | 35.0% |
| GGTTCAAGAGAAGGAAAATA+AGG | - | chr3_1:41411136-41411155 | None:intergenic | 35.0% | |
| ! | TGAACTACGACAAACTTTTG+GGG | - | chr3_1:41411157-41411176 | None:intergenic | 35.0% |
| ! | GTGAACTACGACAAACTTTT+GGG | - | chr3_1:41411158-41411177 | None:intergenic | 35.0% |
| ! | TGTGAACTACGACAAACTTT+TGG | - | chr3_1:41411159-41411178 | None:intergenic | 35.0% |
| AAAGTTTGTCGTAGTTCACA+AGG | + | chr3_1:41411159-41411178 | Msa0357750:CDS | 35.0% | |
| !!! | CATTCCTCGCTTTTTTCTTT+TGG | - | chr3_1:41411400-41411419 | None:intergenic | 35.0% |
| TTGGTTGTTACCACTTAATG+GGG | + | chr3_1:41411523-41411542 | Msa0357750:intron | 35.0% | |
| ACATTGTAACTTTAACGTCG+TGG | - | chr3_1:41411866-41411885 | None:intergenic | 35.0% | |
| TAAGCAAATCATGATTGGGT+TGG | - | chr3_1:41411924-41411943 | None:intergenic | 35.0% | |
| ATCATCAACACCCTATTTCA+AGG | + | chr3_1:41412081-41412100 | Msa0357750:intron | 35.0% | |
| TCATCAACACCCTATTTCAA+GGG | + | chr3_1:41412082-41412101 | Msa0357750:intron | 35.0% | |
| TAATCCATCCTAACTGAGTT+CGG | - | chr3_1:41412132-41412151 | None:intergenic | 35.0% | |
| TAATCTGAACTCAGTTAGGA+TGG | + | chr3_1:41412154-41412173 | Msa0357750:intron | 35.0% | |
| GTCGTTCTTAGTCAAAAATC+CGG | + | chr3_1:41412247-41412266 | Msa0357750:intron | 35.0% | |
| ! | TAGTCAAAAATCCGGTTTTC+AGG | + | chr3_1:41412255-41412274 | Msa0357750:intron | 35.0% |
| TTATTTCCAAGGCCAAGTTT+CGG | - | chr3_1:41412307-41412326 | None:intergenic | 35.0% | |
| !! | CTCTCATGGATAGTCATTTT+AGG | - | chr3_1:41412503-41412522 | None:intergenic | 35.0% |
| AATGACTATCCATGAGAGTT+AGG | + | chr3_1:41412505-41412524 | Msa0357750:intron | 35.0% | |
| ! | TTTCTAGGGGAAAAACAGTT+AGG | - | chr3_1:41412613-41412632 | None:intergenic | 35.0% |
| ! | CCTAAACACTCTTTTTCTAG+GGG | - | chr3_1:41412626-41412645 | None:intergenic | 35.0% |
| ! | CCCTAAACACTCTTTTTCTA+GGG | - | chr3_1:41412627-41412646 | None:intergenic | 35.0% |
| !! | CCCTAGAAAAAGAGTGTTTA+GGG | + | chr3_1:41412624-41412643 | Msa0357750:intron | 35.0% |
| !! | CCTAGAAAAAGAGTGTTTAG+GGG | + | chr3_1:41412625-41412644 | Msa0357750:intron | 35.0% |
| !!! | GCCCTATTTTTTGAGGTTTT+CGG | + | chr3_1:41412685-41412704 | Msa0357750:intron | 35.0% |
| ! | CATTTTCCACCTCATTACAA+AGG | + | chr3_1:41412736-41412755 | Msa0357750:intron | 35.0% |
| ! | GTTTTTCCTTTGTAATGAGG+TGG | - | chr3_1:41412745-41412764 | None:intergenic | 35.0% |
| !!! | AACAATCTCAAGGGCATTTT+CGG | + | chr3_1:41412786-41412805 | Msa0357750:intron | 35.0% |
| CTCAAAAATCAAACTACCGT+TGG | + | chr3_1:41412985-41413004 | Msa0357750:intron | 35.0% | |
| !! | TCGTTCGACACTTTTTAGAT+TGG | + | chr3_1:41413059-41413078 | Msa0357750:intron | 35.0% |
| !!! | AATTGCTTTTTAGGCAACCA+CGG | - | chr3_1:41413166-41413185 | None:intergenic | 35.0% |
| TCTAGATATAGTCACGATTG+AGG | + | chr3_1:41413248-41413267 | Msa0357750:intron | 35.0% | |
| GGGTAATGTATTAAAGGCTT+AGG | - | chr3_1:41413338-41413357 | None:intergenic | 35.0% | |
| GCTAAGGGGTAATGTATTAA+AGG | - | chr3_1:41413344-41413363 | None:intergenic | 35.0% | |
| AATCAAACCTGCATGATGTA+GGG | - | chr3_1:41413392-41413411 | None:intergenic | 35.0% | |
| AGAATCTTGCATGAAGCACA+TGG | - | chr3_1:41411079-41411098 | None:intergenic | 40.0% | |
| ! | GGAGCAAAGATGCAATCTTT+TGG | - | chr3_1:41411115-41411134 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCAAGAGA+AGG | - | chr3_1:41411145-41411164 | None:intergenic | 40.0% |
| ! | GTCGTAGTTCACAAGGTTTT+TGG | + | chr3_1:41411166-41411185 | Msa0357750:CDS | 40.0% |
| ! | GGAACACTAAAAAGAGTACG+AGG | - | chr3_1:41411223-41411242 | None:intergenic | 40.0% |
| GAGACCAAAAGAAAAAAGCG+AGG | + | chr3_1:41411393-41411412 | Msa0357750:intron | 40.0% | |
| TAATCCGAACTCAGTTAGGA+TGG | + | chr3_1:41412125-41412144 | Msa0357750:intron | 40.0% | |
| TGATCAAGTAGCCTGAAAAC+CGG | - | chr3_1:41412269-41412288 | None:intergenic | 40.0% | |
| ATTCAGATTGCTCCGAAACT+TGG | + | chr3_1:41412292-41412311 | Msa0357750:intron | 40.0% | |
| !! | CCCCTAGAAAAAGAGTGTTT+AGG | + | chr3_1:41412623-41412642 | Msa0357750:intron | 40.0% |
| ! | CCCCTAAACACTCTTTTTCT+AGG | - | chr3_1:41412628-41412647 | None:intergenic | 40.0% |
| ! | GGCGCGTTACTTGAATTTTT+CGG | - | chr3_1:41412668-41412687 | None:intergenic | 40.0% |
| GGTTGGATCGATTGTTGTAA+TGG | + | chr3_1:41412878-41412897 | Msa0357750:intron | 40.0% | |
| TTGAGTCGTGAAGTTCAACA+AGG | - | chr3_1:41412922-41412941 | None:intergenic | 40.0% | |
| !! | CAAACTACCGTTGGTTTGAT+TGG | + | chr3_1:41412994-41413013 | Msa0357750:intron | 40.0% |
| GATTGGACCAATCAAACCAA+CGG | - | chr3_1:41413004-41413023 | None:intergenic | 40.0% | |
| ! | CTCAACTGGTTTAAGCTAAG+GGG | - | chr3_1:41413358-41413377 | None:intergenic | 40.0% |
| ! | GCTCAACTGGTTTAAGCTAA+GGG | - | chr3_1:41413359-41413378 | None:intergenic | 40.0% |
| ! | AGCTCAACTGGTTTAAGCTA+AGG | - | chr3_1:41413360-41413379 | None:intergenic | 40.0% |
| ATCAAACCTGCATGATGTAG+GGG | - | chr3_1:41413391-41413410 | None:intergenic | 40.0% | |
| GAATCAAACCTGCATGATGT+AGG | - | chr3_1:41413393-41413412 | None:intergenic | 40.0% | |
| AGATTGAGTGACCCAGTTTA+TGG | + | chr3_1:41413814-41413833 | Msa0357750:CDS | 40.0% | |
| GTGTGATCTTGGTTGAATTG+TGG | - | chr3_1:41413958-41413977 | None:intergenic | 40.0% | |
| GTGAGTAGAACCCCATTAAG+TGG | - | chr3_1:41411536-41411555 | None:intergenic | 45.0% | |
| ATTGAGCAATCGCCAACTTC+CGG | + | chr3_1:41411608-41411627 | Msa0357750:intron | 45.0% | |
| !!! | GAATTGCACAGGGGCATTTT+TGG | - | chr3_1:41412021-41412040 | None:intergenic | 45.0% |
| !!! | GTAACGCGCCCTATTTTTTG+AGG | + | chr3_1:41412678-41412697 | Msa0357750:intron | 45.0% |
| !!! | ATCTCAAGGGCATTTTCGGA+AGG | + | chr3_1:41412790-41412809 | Msa0357750:intron | 45.0% |
| CGCTCGAGAAATGAATATGG+TGG | + | chr3_1:41412825-41412844 | Msa0357750:intron | 45.0% | |
| AAACGGCAGTTAAGTGTCAC+TGG | + | chr3_1:41413127-41413146 | Msa0357750:intron | 45.0% | |
| TCAAACCTGCATGATGTAGG+GGG | - | chr3_1:41413390-41413409 | None:intergenic | 45.0% | |
| AGGATCTTCCGATTCAGCAA+AGG | + | chr3_1:41413752-41413771 | Msa0357750:intron | 45.0% | |
| GGATCTTCCGATTCAGCAAA+GGG | + | chr3_1:41413753-41413772 | Msa0357750:intron | 45.0% | |
| CTCCAGCACAACCATAAACT+GGG | - | chr3_1:41413828-41413847 | None:intergenic | 45.0% | |
| TCTTGGTTGAATTGTGGTGC+TGG | - | chr3_1:41413952-41413971 | None:intergenic | 45.0% | |
| !! | AGGTATTGAGCGAGTTCATC+TGG | - | chr3_1:41413994-41414013 | None:intergenic | 45.0% |
| !! | AATAAAAAAAATACTAAAAA+AGG | - | chr3_1:41411713-41411732 | None:intergenic | 5.0% |
| !! | TAAAAAAATACTAATAAAAA+AGG | - | chr3_1:41411752-41411771 | None:intergenic | 5.0% |
| !!! | GTTTTTGGCGCTAGCAACGT+TGG | + | chr3_1:41411181-41411200 | Msa0357750:CDS | 50.0% |
| CAACGTTGGCAGAATGTTGC+AGG | + | chr3_1:41411195-41411214 | Msa0357750:CDS | 50.0% | |
| ATTGCTCCGAAACTTGGCCT+TGG | + | chr3_1:41412298-41412317 | Msa0357750:intron | 50.0% | |
| GGGCGCTCGAGAAATGAATA+TGG | + | chr3_1:41412822-41412841 | Msa0357750:intron | 50.0% | |
| CTGGATGTAAGAGCAAACCG+TGG | + | chr3_1:41413146-41413165 | Msa0357750:intron | 50.0% | |
| CAAACCTGCATGATGTAGGG+GGG | - | chr3_1:41413389-41413408 | None:intergenic | 50.0% | |
| CTTCCGATTCAGCAAAGGGA+AGG | + | chr3_1:41413757-41413776 | Msa0357750:CDS | 50.0% | |
| GCACCTTCCCTTTGCTGAAT+CGG | - | chr3_1:41413763-41413782 | None:intergenic | 50.0% | |
| GACCCAGTTTATGGTTGTGC+TGG | + | chr3_1:41413823-41413842 | Msa0357750:CDS | 50.0% | |
| GCTCCAGCACAACCATAAAC+TGG | - | chr3_1:41413829-41413848 | None:intergenic | 50.0% | |
| TTGCTCGAGCAACTGCAAGT+TGG | - | chr3_1:41413891-41413910 | None:intergenic | 50.0% | |
| ! | GGGGGGTTTGATAGCTCAAC+TGG | - | chr3_1:41413372-41413391 | None:intergenic | 55.0% |
| CAAACCCCCCTACATCATGC+AGG | + | chr3_1:41413382-41413401 | Msa0357750:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 41411031 | 41414035 | 41411031 | ID=Msa0357750;Name=Msa0357750 |
| chr3_1 | mRNA | 41411031 | 41414035 | 41411031 | ID=Msa0357750-mRNA-1;Parent=Msa0357750;Name=Msa0357750-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|155 |
| chr3_1 | exon | 41411031 | 41411216 | 41411031 | ID=Msa0357750-mRNA-1:exon:7220;Parent=Msa0357750-mRNA-1 |
| chr3_1 | exon | 41413754 | 41414035 | 41413754 | ID=Msa0357750-mRNA-1:exon:7221;Parent=Msa0357750-mRNA-1 |
| chr3_1 | CDS | 41411031 | 41411216 | 41411031 | ID=Msa0357750-mRNA-1:cds;Parent=Msa0357750-mRNA-1 |
| chr3_1 | CDS | 41413754 | 41414035 | 41413754 | ID=Msa0357750-mRNA-1:cds;Parent=Msa0357750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
