Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357880 | XP_003616690.1 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 7.40e-75 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357880 | sp|Q8LBW3|LBD12_ARATH | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 4.52e-57 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357880 | G7K288 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 3.53e-75 | 231 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0357880 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0357750 | Msa0357880 | 0.946591 | 3.448062e-105 | -8.615850e-47 |
| Msa0357800 | Msa0357880 | 0.865993 | 3.944282e-65 | -8.615850e-47 |
| Msa0357810 | Msa0357880 | 0.862085 | 6.505006e-64 | -8.615850e-47 |
| Msa0357820 | Msa0357880 | 0.952865 | 9.616785e-111 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357880 | MtrunA17_Chr5g0437571 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 6.81e-79 | 231 |
| Msa0357880 | MtrunA17_Chr3g0114061 | 64.828 | 145 | 43 | 3 | 11 | 151 | 1 | 141 | 1.11e-60 | 184 |
| Msa0357880 | MtrunA17_Chr3g0106101 | 56.291 | 151 | 55 | 2 | 12 | 151 | 3 | 153 | 1.97e-55 | 172 |
| Msa0357880 | MtrunA17_Chr2g0311601 | 62.500 | 128 | 40 | 1 | 9 | 136 | 6 | 125 | 6.26e-53 | 165 |
| Msa0357880 | MtrunA17_Chr4g0043421 | 64.912 | 114 | 40 | 0 | 9 | 122 | 8 | 121 | 8.22e-51 | 160 |
| Msa0357880 | MtrunA17_Chr4g0030001 | 58.772 | 114 | 46 | 1 | 15 | 127 | 23 | 136 | 3.01e-45 | 146 |
| Msa0357880 | MtrunA17_Chr1g0200201 | 60.360 | 111 | 44 | 0 | 17 | 127 | 73 | 183 | 1.66e-43 | 143 |
| Msa0357880 | MtrunA17_Chr3g0115431 | 61.538 | 104 | 40 | 0 | 13 | 116 | 6 | 109 | 1.72e-42 | 140 |
| Msa0357880 | MtrunA17_Chr5g0438091 | 51.128 | 133 | 58 | 1 | 6 | 131 | 22 | 154 | 2.72e-42 | 139 |
| Msa0357880 | MtrunA17_Chr7g0227511 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 9.56e-41 | 134 |
| Msa0357880 | MtrunA17_Chr3g0117121 | 62.857 | 105 | 39 | 0 | 12 | 116 | 6 | 110 | 1.58e-40 | 134 |
| Msa0357880 | MtrunA17_Chr4g0058651 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 2.58e-40 | 134 |
| Msa0357880 | MtrunA17_Chr6g0449641 | 51.639 | 122 | 59 | 0 | 14 | 135 | 7 | 128 | 3.72e-40 | 132 |
| Msa0357880 | MtrunA17_Chr6g0449651 | 59.223 | 103 | 42 | 0 | 14 | 116 | 65 | 167 | 1.58e-39 | 132 |
| Msa0357880 | MtrunA17_Chr5g0402611 | 52.273 | 132 | 60 | 2 | 12 | 140 | 4 | 135 | 9.68e-39 | 133 |
| Msa0357880 | MtrunA17_Chr3g0129071 | 57.407 | 108 | 46 | 0 | 15 | 122 | 46 | 153 | 3.41e-38 | 130 |
| Msa0357880 | MtrunA17_Chr5g0437401 | 52.033 | 123 | 57 | 1 | 13 | 135 | 8 | 128 | 4.61e-38 | 127 |
| Msa0357880 | MtrunA17_Chr3g0113891 | 59.406 | 101 | 41 | 0 | 13 | 113 | 11 | 111 | 8.73e-38 | 127 |
| Msa0357880 | MtrunA17_Chr7g0225111 | 50.450 | 111 | 55 | 0 | 15 | 125 | 4 | 114 | 1.52e-37 | 124 |
| Msa0357880 | MtrunA17_Chr3g0097221 | 54.286 | 105 | 48 | 0 | 12 | 116 | 3 | 107 | 3.60e-37 | 129 |
| Msa0357880 | MtrunA17_Chr5g0444351 | 48.718 | 117 | 60 | 0 | 17 | 133 | 6 | 122 | 1.23e-36 | 123 |
| Msa0357880 | MtrunA17_Chr8g0353981 | 54.237 | 118 | 52 | 1 | 12 | 129 | 3 | 118 | 1.21e-34 | 120 |
| Msa0357880 | MtrunA17_Chr5g0432451 | 58.824 | 102 | 42 | 0 | 15 | 116 | 42 | 143 | 3.70e-34 | 119 |
| Msa0357880 | MtrunA17_Chr1g0184281 | 52.381 | 105 | 49 | 1 | 12 | 115 | 11 | 115 | 7.37e-34 | 118 |
| Msa0357880 | MtrunA17_Chr5g0435641 | 41.333 | 150 | 78 | 4 | 11 | 153 | 1 | 147 | 3.26e-33 | 115 |
| Msa0357880 | MtrunA17_Chr7g0260971 | 51.429 | 105 | 50 | 1 | 15 | 118 | 13 | 117 | 1.23e-32 | 115 |
| Msa0357880 | MtrunA17_Chr6g0460951 | 39.437 | 142 | 75 | 3 | 15 | 153 | 39 | 172 | 3.44e-31 | 111 |
| Msa0357880 | MtrunA17_Chr7g0261031 | 51.402 | 107 | 50 | 2 | 11 | 115 | 2 | 108 | 6.03e-31 | 111 |
| Msa0357880 | MtrunA17_Chr8g0351721 | 47.934 | 121 | 60 | 2 | 13 | 132 | 15 | 133 | 1.60e-30 | 109 |
| Msa0357880 | MtrunA17_Chr8g0351701 | 53.125 | 96 | 44 | 1 | 16 | 110 | 23 | 118 | 1.93e-30 | 110 |
| Msa0357880 | MtrunA17_Chr8g0374591 | 46.535 | 101 | 54 | 0 | 16 | 116 | 8 | 108 | 3.21e-30 | 106 |
| Msa0357880 | MtrunA17_Chr1g0184271 | 40.714 | 140 | 80 | 2 | 16 | 154 | 12 | 149 | 3.65e-30 | 109 |
| Msa0357880 | MtrunA17_Chr7g0245871 | 50.980 | 102 | 49 | 1 | 16 | 116 | 27 | 128 | 1.25e-29 | 108 |
| Msa0357880 | MtrunA17_Chr8g0374601 | 45.536 | 112 | 59 | 1 | 16 | 127 | 26 | 135 | 1.79e-29 | 108 |
| Msa0357880 | MtrunA17_Chr7g0245861 | 52.688 | 93 | 41 | 2 | 13 | 102 | 9 | 101 | 1.94e-27 | 99.8 |
| Msa0357880 | MtrunA17_Chr6g0460941 | 46.591 | 88 | 46 | 1 | 16 | 102 | 7 | 94 | 3.82e-25 | 92.4 |
| Msa0357880 | MtrunA17_Chr6g0452691 | 37.719 | 114 | 70 | 1 | 11 | 123 | 4 | 117 | 6.60e-25 | 94.4 |
| Msa0357880 | MtrunA17_Chr8g0374581 | 42.478 | 113 | 62 | 2 | 16 | 127 | 8 | 118 | 2.93e-23 | 91.3 |
| Msa0357880 | MtrunA17_Chr6g0452661 | 34.234 | 111 | 72 | 1 | 14 | 123 | 7 | 117 | 3.07e-21 | 86.7 |
| Msa0357880 | MtrunA17_Chr6g0452671 | 31.496 | 127 | 87 | 0 | 17 | 143 | 12 | 138 | 4.04e-21 | 85.1 |
| Msa0357880 | MtrunA17_Chr2g0330201 | 38.000 | 100 | 62 | 0 | 17 | 116 | 20 | 119 | 4.77e-21 | 86.7 |
| Msa0357880 | MtrunA17_Chr4g0059901 | 41.935 | 93 | 54 | 0 | 17 | 109 | 11 | 103 | 6.95e-21 | 85.9 |
| Msa0357880 | MtrunA17_Chr4g0040831 | 37.391 | 115 | 66 | 1 | 17 | 131 | 16 | 124 | 1.55e-20 | 83.6 |
| Msa0357880 | MtrunA17_Chr8g0342351 | 35.000 | 100 | 65 | 0 | 17 | 116 | 13 | 112 | 1.13e-19 | 82.4 |
| Msa0357880 | MtrunA17_Chr2g0326051 | 55.224 | 67 | 30 | 0 | 61 | 127 | 5 | 71 | 2.30e-19 | 78.6 |
| Msa0357880 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 15 | 62 | 32 | 79 | 9.53e-19 | 75.9 |
| Msa0357880 | MtrunA17_Chr4g0055441 | 32.456 | 114 | 76 | 1 | 17 | 129 | 3 | 116 | 9.91e-19 | 77.8 |
| Msa0357880 | MtrunA17_Chr4g0046201 | 37.634 | 93 | 58 | 0 | 11 | 103 | 1 | 93 | 1.30e-18 | 79.7 |
| Msa0357880 | MtrunA17_Chr5g0439111 | 40.964 | 83 | 48 | 1 | 14 | 95 | 7 | 89 | 2.07e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0357880 | AT2G30130.1 | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 4.60e-58 | 179 |
| Msa0357880 | AT2G28500.1 | 50.714 | 140 | 68 | 1 | 15 | 154 | 54 | 192 | 5.09e-48 | 155 |
| Msa0357880 | AT1G07900.1 | 63.889 | 108 | 37 | 1 | 15 | 122 | 32 | 137 | 1.06e-47 | 153 |
| Msa0357880 | AT1G31320.1 | 59.350 | 123 | 50 | 0 | 7 | 129 | 4 | 126 | 5.39e-45 | 145 |
| Msa0357880 | AT1G16530.1 | 60.748 | 107 | 41 | 1 | 15 | 120 | 13 | 119 | 3.27e-43 | 140 |
| Msa0357880 | AT5G63090.4 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357880 | AT5G63090.3 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357880 | AT5G63090.2 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357880 | AT5G63090.1 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
| Msa0357880 | AT3G27650.1 | 60.194 | 103 | 41 | 0 | 14 | 116 | 37 | 139 | 4.72e-40 | 132 |
| Msa0357880 | AT3G26620.1 | 49.600 | 125 | 54 | 1 | 17 | 141 | 6 | 121 | 8.39e-40 | 130 |
| Msa0357880 | AT3G26660.1 | 57.000 | 100 | 43 | 0 | 17 | 116 | 6 | 105 | 2.67e-39 | 129 |
| Msa0357880 | AT2G30340.1 | 52.941 | 119 | 56 | 0 | 15 | 133 | 51 | 169 | 1.32e-38 | 132 |
| Msa0357880 | AT2G30340.2 | 52.941 | 119 | 56 | 0 | 15 | 133 | 52 | 170 | 1.35e-38 | 132 |
| Msa0357880 | AT2G23660.2 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
| Msa0357880 | AT2G23660.3 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
| Msa0357880 | AT2G23660.1 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
| Msa0357880 | AT3G11090.1 | 54.310 | 116 | 52 | 1 | 14 | 128 | 9 | 124 | 1.65e-37 | 126 |
| Msa0357880 | AT5G66870.1 | 52.459 | 122 | 57 | 1 | 12 | 132 | 3 | 124 | 6.36e-37 | 129 |
| Msa0357880 | AT1G65620.1 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357880 | AT1G65620.4 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357880 | AT1G65620.3 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357880 | AT1G65620.5 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357880 | AT1G65620.2 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
| Msa0357880 | AT2G40470.2 | 60.784 | 102 | 40 | 0 | 15 | 116 | 19 | 120 | 3.51e-35 | 121 |
| Msa0357880 | AT2G40470.1 | 60.784 | 102 | 40 | 0 | 15 | 116 | 44 | 145 | 5.37e-35 | 122 |
| Msa0357880 | AT4G00210.1 | 48.031 | 127 | 55 | 3 | 11 | 131 | 1 | 122 | 1.36e-33 | 118 |
| Msa0357880 | AT3G03760.1 | 52.427 | 103 | 48 | 1 | 15 | 116 | 50 | 152 | 3.92e-33 | 118 |
| Msa0357880 | AT2G42430.1 | 53.846 | 104 | 47 | 1 | 14 | 116 | 13 | 116 | 4.38e-33 | 117 |
| Msa0357880 | AT3G50510.1 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.33e-31 | 112 |
| Msa0357880 | AT3G50510.2 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.33e-31 | 112 |
| Msa0357880 | AT2G45410.1 | 45.238 | 126 | 65 | 2 | 19 | 140 | 19 | 144 | 2.15e-31 | 111 |
| Msa0357880 | AT2G42440.1 | 43.750 | 128 | 69 | 3 | 11 | 135 | 1 | 128 | 6.27e-31 | 112 |
| Msa0357880 | AT2G31310.1 | 40.714 | 140 | 73 | 3 | 11 | 140 | 1 | 140 | 1.74e-29 | 106 |
| Msa0357880 | AT3G58190.1 | 49.495 | 99 | 49 | 1 | 16 | 113 | 11 | 109 | 1.77e-29 | 107 |
| Msa0357880 | AT5G06080.1 | 41.600 | 125 | 69 | 2 | 12 | 132 | 3 | 127 | 1.07e-27 | 101 |
| Msa0357880 | AT2G45420.1 | 46.154 | 104 | 55 | 1 | 19 | 121 | 40 | 143 | 4.43e-27 | 102 |
| Msa0357880 | AT4G00220.1 | 48.077 | 104 | 53 | 1 | 19 | 121 | 20 | 123 | 5.20e-27 | 101 |
| Msa0357880 | AT5G35900.1 | 40.777 | 103 | 61 | 0 | 17 | 119 | 6 | 108 | 4.52e-24 | 93.2 |
| Msa0357880 | AT3G13850.1 | 36.800 | 125 | 65 | 3 | 17 | 127 | 37 | 161 | 2.87e-23 | 92.4 |
| Msa0357880 | AT1G72980.1 | 41.176 | 102 | 60 | 0 | 15 | 116 | 12 | 113 | 1.18e-22 | 89.7 |
| Msa0357880 | AT3G47870.1 | 38.889 | 90 | 55 | 0 | 10 | 99 | 30 | 119 | 2.19e-18 | 80.5 |
| Msa0357880 | AT1G06280.1 | 45.455 | 77 | 42 | 0 | 17 | 93 | 25 | 101 | 2.69e-18 | 78.2 |
| Msa0357880 | AT2G19820.1 | 38.542 | 96 | 58 | 1 | 15 | 109 | 11 | 106 | 1.65e-17 | 73.9 |
| Msa0357880 | AT4G22700.1 | 40.659 | 91 | 52 | 2 | 17 | 106 | 6 | 95 | 2.89e-15 | 70.1 |
| Msa0357880 | AT5G15060.1 | 41.892 | 74 | 39 | 2 | 17 | 87 | 18 | 90 | 8.57e-13 | 62.4 |
| Msa0357880 | AT1G36000.1 | 29.348 | 92 | 65 | 0 | 11 | 102 | 4 | 95 | 1.19e-12 | 61.6 |
Find 22 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAACTACGACAAACTTT+TGG | 0.258263 | 3_1:+41860979 | None:intergenic |
| AGATTGAGTGACCCAGTTTA+TGG | 0.284882 | 3_1:-41858297 | Msa0357880:CDS |
| AACAAGAAATATCATAATTA+AGG | 0.293198 | 3_1:+41858100 | None:intergenic |
| GGAGCAAAGATGCAATCTTT+TGG | 0.343297 | 3_1:+41861023 | None:intergenic |
| GCTCCAGCACAACCATAAAC+TGG | 0.357617 | 3_1:+41858285 | None:intergenic |
| CATATATCACTTGCAAAATC+AGG | 0.363361 | 3_1:-41858262 | Msa0357880:CDS |
| GCACCTTCCCTTTGCTGAAT+CGG | 0.373246 | 3_1:+41858351 | None:intergenic |
| AGGTATTGAGCGAGTTCATC+TGG | 0.379557 | 3_1:+41858120 | None:intergenic |
| CAACGTTGGCAGAATGTTGC+AGG | 0.398392 | 3_1:-41860940 | Msa0357880:intron |
| GGTTCAAGAGAAGGAAAATA+AGG | 0.429065 | 3_1:+41861002 | None:intergenic |
| TCTTGGTTGAATTGTGGTGC+TGG | 0.452174 | 3_1:+41858162 | None:intergenic |
| GACCCAGTTTATGGTTGTGC+TGG | 0.452179 | 3_1:-41858288 | Msa0357880:CDS |
| TAAAGTAAGATGTGTGATCT+TGG | 0.468213 | 3_1:+41858145 | None:intergenic |
| GGATCTTCCGATTCAGCAAA+GGG | 0.503129 | 3_1:-41858358 | Msa0357880:CDS |
| TTGCTCGAGCAACTGCAAGT+TGG | 0.520454 | 3_1:+41858223 | None:intergenic |
| CTCCAGCACAACCATAAACT+GGG | 0.573541 | 3_1:+41858286 | None:intergenic |
| GTGTGATCTTGGTTGAATTG+TGG | 0.577677 | 3_1:+41858156 | None:intergenic |
| AGGATCTTCCGATTCAGCAA+AGG | 0.581668 | 3_1:-41858359 | Msa0357880:CDS |
| AAAGTTTGTCGTAGTTCACA+AGG | 0.596548 | 3_1:-41860976 | Msa0357880:CDS |
| AGAATCTTGCATGAAGCACA+TGG | 0.616501 | 3_1:+41861059 | None:intergenic |
| CTTCCGATTCAGCAAAGGGA+AGG | 0.633097 | 3_1:-41858354 | Msa0357880:CDS |
| GAAAAGAAAATTGTAAACAG+AGG | 0.681415 | 3_1:+41861107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAGCTAAAAAA+AGG | + | chr3_1:41858778-41858797 | None:intergenic | 10.0% |
| !!! | TTTTAATTTTACTGATTTTA+TGG | + | chr3_1:41859420-41859439 | None:intergenic | 10.0% |
| !! | TTAATAAAATTGAGAAATAT+AGG | + | chr3_1:41859522-41859541 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAAAAAGTGTT+TGG | + | chr3_1:41860313-41860332 | None:intergenic | 10.0% |
| !! | TAAATAATTAACCATTAAAA+AGG | + | chr3_1:41860565-41860584 | None:intergenic | 10.0% |
| !!! | ATAAGTGTTTATTATTTTTT+AGG | - | chr3_1:41860607-41860626 | Msa0357880:intron | 10.0% |
| !!! | TAAGTGTTTATTATTTTTTA+GGG | - | chr3_1:41860608-41860627 | Msa0357880:intron | 10.0% |
| !! | TTAATCATCTAAAAAGTAAA+TGG | + | chr3_1:41858311-41858330 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTAGACATATTTT+AGG | - | chr3_1:41858492-41858511 | Msa0357880:intron | 15.0% |
| !!! | TCTTTTATGTTTTTTATATC+CGG | + | chr3_1:41858696-41858715 | None:intergenic | 15.0% |
| !! | GTATTAAATACAAATTCATA+AGG | + | chr3_1:41858723-41858742 | None:intergenic | 15.0% |
| !! | TGAATAAAAAAACTTAGAAA+AGG | + | chr3_1:41858752-41858771 | None:intergenic | 15.0% |
| !! | ATTTATTAAGCAACTTAAAA+GGG | + | chr3_1:41858858-41858877 | None:intergenic | 15.0% |
| !! | TATTTATTAAGCAACTTAAA+AGG | + | chr3_1:41858859-41858878 | None:intergenic | 15.0% |
| !!! | TTTTTGAAAGAGTATTTTTT+TGG | + | chr3_1:41859476-41859495 | None:intergenic | 15.0% |
| !! | TTCGATTATAAAATTCAAAT+TGG | - | chr3_1:41859801-41859820 | Msa0357880:intron | 15.0% |
| !!! | GTTTGATGATTTTTTTAAAT+TGG | + | chr3_1:41860208-41860227 | None:intergenic | 15.0% |
| !!! | ATGATTTAAAACCTTTTTAA+TGG | - | chr3_1:41860551-41860570 | Msa0357880:intron | 15.0% |
| !!! | AAGTGTTTATTATTTTTTAG+GGG | - | chr3_1:41860609-41860628 | Msa0357880:intron | 15.0% |
| !! | AACAAGAAATATCATAATTA+AGG | + | chr3_1:41861105-41861124 | None:intergenic | 15.0% |
| !! | CAATATAAACAACTAATCTT+GGG | + | chr3_1:41858363-41858382 | None:intergenic | 20.0% |
| !! | ACAATATAAACAACTAATCT+TGG | + | chr3_1:41858364-41858383 | None:intergenic | 20.0% |
| !!! | TAGTTTGTGAATAAAATGTT+TGG | - | chr3_1:41858429-41858448 | Msa0357880:intron | 20.0% |
| !!! | ATTTTCAGAAAAGTAACTAT+TGG | - | chr3_1:41858573-41858592 | Msa0357880:intron | 20.0% |
| !!! | ATCGGATTTTAAAATATAGT+TGG | - | chr3_1:41858922-41858941 | Msa0357880:intron | 20.0% |
| !!! | AGTCATCAATTTATATGTTT+TGG | + | chr3_1:41859057-41859076 | None:intergenic | 20.0% |
| !! | ATTAAAATCTAAATTGCACA+GGG | + | chr3_1:41859135-41859154 | None:intergenic | 20.0% |
| !! | TATTAAAATCTAAATTGCAC+AGG | + | chr3_1:41859136-41859155 | None:intergenic | 20.0% |
| !!! | TTAGATTTTAATATCCGAAT+TGG | - | chr3_1:41859143-41859162 | Msa0357880:intron | 20.0% |
| !! | ATCGAAAATCTCAAAAAATA+GGG | + | chr3_1:41859787-41859806 | None:intergenic | 20.0% |
| !! | AATCGAAAATCTCAAAAAAT+AGG | + | chr3_1:41859788-41859807 | None:intergenic | 20.0% |
| !!! | TTTAAAATCTGAAAATCTCA+AGG | - | chr3_1:41859873-41859892 | Msa0357880:intron | 20.0% |
| !! | TTAAAATCTGAAAATCTCAA+GGG | - | chr3_1:41859874-41859893 | Msa0357880:intron | 20.0% |
| !!! | ATTTTCAGAAGGAAAAAAAT+AGG | - | chr3_1:41859898-41859917 | Msa0357880:intron | 20.0% |
| !!! | TTTTCAGAAGGAAAAAAATA+GGG | - | chr3_1:41859899-41859918 | Msa0357880:intron | 20.0% |
| !! | TAGTCTAAATTGATTGAATA+TGG | - | chr3_1:41859954-41859973 | Msa0357880:intron | 20.0% |
| !!! | TTTTTAATTCATCCACAAAA+TGG | - | chr3_1:41860123-41860142 | Msa0357880:intron | 20.0% |
| !!! | AAACTGATTTAAAAAGTGAT+TGG | + | chr3_1:41860183-41860202 | None:intergenic | 20.0% |
| !!! | TATTTAGGAAATTGCTTTTT+AGG | + | chr3_1:41860272-41860291 | None:intergenic | 20.0% |
| !! | AAAGCAATTTCCTAAATATT+TGG | - | chr3_1:41860274-41860293 | Msa0357880:intron | 20.0% |
| !! | AAGCAATTTCCTAAATATTT+GGG | - | chr3_1:41860275-41860294 | Msa0357880:intron | 20.0% |
| !!! | TTTTTTGTTTTGCAATGAAA+AGG | - | chr3_1:41860509-41860528 | Msa0357880:intron | 20.0% |
| !! | TTTTCGAAGAAAAAAATGAG+TGG | - | chr3_1:41858113-41858132 | Msa0357880:CDS | 25.0% |
| !! | TTTTCTTTTGGTCTCAAAAA+AGG | + | chr3_1:41858455-41858474 | None:intergenic | 25.0% |
| ! | TACAAGTAGAATTGTCATAT+AGG | - | chr3_1:41858998-41859017 | Msa0357880:intron | 25.0% |
| ! | ATACTAAGCAAATCATGATT+GGG | + | chr3_1:41859033-41859052 | None:intergenic | 25.0% |
| ! | TATACTAAGCAAATCATGAT+TGG | + | chr3_1:41859034-41859053 | None:intergenic | 25.0% |
| !!! | ATTTTTGGAAAAAAAGCACA+GGG | + | chr3_1:41859110-41859129 | None:intergenic | 25.0% |
| ! | TTAAAATCTAAATTGCACAG+GGG | + | chr3_1:41859134-41859153 | None:intergenic | 25.0% |
| !! | AAATGAGTTTTTCACCAATT+CGG | + | chr3_1:41859160-41859179 | None:intergenic | 25.0% |
| !! | ATGGATCATATAACATTTTC+TGG | - | chr3_1:41859277-41859296 | Msa0357880:intron | 25.0% |
| ! | AATAACTATTCATGAGAGTT+AGG | + | chr3_1:41859317-41859336 | None:intergenic | 25.0% |
| !!! | CTCTCATGAATAGTTATTTT+AGG | - | chr3_1:41859319-41859338 | Msa0357880:intron | 25.0% |
| !!! | TTTTACTGATTTTATGGTCA+AGG | + | chr3_1:41859414-41859433 | None:intergenic | 25.0% |
| !!! | TAACATGGATAGTCATTTTA+AGG | + | chr3_1:41859642-41859661 | None:intergenic | 25.0% |
| !! | TTTTGAACATGTTTGTAACA+TGG | + | chr3_1:41859657-41859676 | None:intergenic | 25.0% |
| !! | TGAATTTTTCCTTTGTAATG+AGG | + | chr3_1:41859845-41859864 | None:intergenic | 25.0% |
| ! | TACAAAGGAAAAATTCAGTT+TGG | - | chr3_1:41859848-41859867 | Msa0357880:intron | 25.0% |
| ! | CTAAATTGATTGAATATGGT+TGG | - | chr3_1:41859958-41859977 | Msa0357880:intron | 25.0% |
| ! | GACTCAACTCATAAAAATTT+GGG | - | chr3_1:41860032-41860051 | Msa0357880:intron | 25.0% |
| !!! | TTGATTTTTGAGCAATTAGA+GGG | + | chr3_1:41860074-41860093 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTGAGCAATTAG+AGG | + | chr3_1:41860075-41860094 | None:intergenic | 25.0% |
| ! | TGGATGAATTAAAAAGTGAT+TGG | + | chr3_1:41860118-41860137 | None:intergenic | 25.0% |
| ! | ACTCATTAACCCAAATATTT+AGG | + | chr3_1:41860287-41860306 | None:intergenic | 25.0% |
| !! | AAATATTTGGGTTAATGAGT+CGG | - | chr3_1:41860287-41860306 | Msa0357880:intron | 25.0% |
| ! | GTAATGTATTAAAGGTTTAG+GGG | + | chr3_1:41860427-41860446 | None:intergenic | 25.0% |
| ! | GGTAATGTATTAAAGGTTTA+GGG | + | chr3_1:41860428-41860447 | None:intergenic | 25.0% |
| !!! | TGTTGTACTTTTTTACTATG+CGG | + | chr3_1:41860702-41860721 | None:intergenic | 25.0% |
| !! | AAAAAGTACAACAATGTTGT+TGG | - | chr3_1:41860709-41860728 | Msa0357880:intron | 25.0% |
| ! | TATTGGTTGTTACCACTTAA+TGG | - | chr3_1:41858590-41858609 | Msa0357880:intron | 30.0% |
| ATTGGTTGTTACCACTTAAT+GGG | - | chr3_1:41858591-41858610 | Msa0357880:intron | 30.0% | |
| !!! | TGTTTTTTATATCCGGAAGT+TGG | + | chr3_1:41858689-41858708 | None:intergenic | 30.0% |
| !! | CATTTTTGGAAAAAAAGCAC+AGG | + | chr3_1:41859111-41859130 | None:intergenic | 30.0% |
| ATCATAAACACCCTATTTCA+AGG | - | chr3_1:41859184-41859203 | Msa0357880:intron | 30.0% | |
| TCATAAACACCCTATTTCAA+GGG | - | chr3_1:41859185-41859204 | Msa0357880:intron | 30.0% | |
| ! | CTGTTTTATCCCTTGAAATA+GGG | + | chr3_1:41859197-41859216 | None:intergenic | 30.0% |
| ! | ACTGTTTTATCCCTTGAAAT+AGG | + | chr3_1:41859198-41859217 | None:intergenic | 30.0% |
| TATATAATCCGAACTCAGTT+AGG | - | chr3_1:41859224-41859243 | Msa0357880:intron | 30.0% | |
| ATTATTCTTCCTAACTCTCA+TGG | + | chr3_1:41859614-41859633 | None:intergenic | 30.0% | |
| ! | AAATTTGTGCTGATACAGTT+CGG | - | chr3_1:41859674-41859693 | Msa0357880:intron | 30.0% |
| ! | ATTTTTCCTTTGTAATGAGG+TGG | + | chr3_1:41859842-41859861 | None:intergenic | 30.0% |
| CGACTCAACTCATAAAAATT+TGG | - | chr3_1:41860031-41860050 | Msa0357880:intron | 30.0% | |
| AAATTTGGGTGTAGTTCATT+AGG | - | chr3_1:41860046-41860065 | Msa0357880:intron | 30.0% | |
| ! | GACACTTAATAACCATTTTG+TGG | + | chr3_1:41860138-41860157 | None:intergenic | 30.0% |
| !! | TCGTTCGACAATTTTTAGAT+TGG | - | chr3_1:41860156-41860175 | Msa0357880:intron | 30.0% |
| !! | TAGGGGTCAAATTTTGATAA+GGG | + | chr3_1:41860410-41860429 | None:intergenic | 30.0% |
| !! | TTAGGGGTCAAATTTTGATA+AGG | + | chr3_1:41860411-41860430 | None:intergenic | 30.0% |
| GGGTAATGTATTAAAGGTTT+AGG | + | chr3_1:41860429-41860448 | None:intergenic | 30.0% | |
| ! | TTTTACTATGCGGAAAAGTA+AGG | + | chr3_1:41860692-41860711 | None:intergenic | 30.0% |
| AAGAACACAATGATTGATCA+AGG | + | chr3_1:41860760-41860779 | None:intergenic | 30.0% | |
| ! | TTTTTCTCATACAATGCATC+AGG | - | chr3_1:41860823-41860842 | Msa0357880:intron | 30.0% |
| ! | CTGATTTTGCAAGTGATATA+TGG | + | chr3_1:41860942-41860961 | None:intergenic | 30.0% |
| CATATATCACTTGCAAAATC+AGG | - | chr3_1:41860940-41860959 | Msa0357880:intron | 30.0% | |
| TAAAGTAAGATGTGTGATCT+TGG | + | chr3_1:41861060-41861079 | None:intergenic | 30.0% | |
| ! | GAGCAAAGATGCAATCTTTT+GGG | + | chr3_1:41858181-41858200 | None:intergenic | 35.0% |
| GGTTCAAGAGAAGGAAAATA+AGG | + | chr3_1:41858203-41858222 | None:intergenic | 35.0% | |
| ! | TGAACTACGACAAACTTTTG+GGG | + | chr3_1:41858224-41858243 | None:intergenic | 35.0% |
| ! | GTGAACTACGACAAACTTTT+GGG | + | chr3_1:41858225-41858244 | None:intergenic | 35.0% |
| ! | TGTGAACTACGACAAACTTT+TGG | + | chr3_1:41858226-41858245 | None:intergenic | 35.0% |
| AAAGTTTGTCGTAGTTCACA+AGG | - | chr3_1:41858226-41858245 | Msa0357880:CDS | 35.0% | |
| !!! | CATTCCTCGCTTTTTTCTTT+TGG | + | chr3_1:41858467-41858486 | None:intergenic | 35.0% |
| ! | CCATCGGATCACAATTTTTA+TGG | + | chr3_1:41858635-41858654 | None:intergenic | 35.0% |
| CCATAAAAATTGTGATCCGA+TGG | - | chr3_1:41858632-41858651 | Msa0357880:intron | 35.0% | |
| GTTCTCAAATTGTTCACCAT+CGG | + | chr3_1:41858651-41858670 | None:intergenic | 35.0% | |
| CATTGTAACTTTAACAGTCG+TGG | + | chr3_1:41858964-41858983 | None:intergenic | 35.0% | |
| TAAGCAAATCATGATTGGGT+TGG | + | chr3_1:41859029-41859048 | None:intergenic | 35.0% | |
| TAATCCATCCTAACTGAGTT+CGG | + | chr3_1:41859235-41859254 | None:intergenic | 35.0% | |
| AATCTGAACTCAGTTGAACA+TGG | - | chr3_1:41859258-41859277 | Msa0357880:intron | 35.0% | |
| !!! | ACCGGATTTTTGGTTAAGAA+CGG | + | chr3_1:41859355-41859374 | None:intergenic | 35.0% |
| ! | TAACCAAAAATCCGGTTTTC+AGG | - | chr3_1:41859359-41859378 | Msa0357880:intron | 35.0% |
| !! | CTCTCATGGATAGTCATTTT+AGG | + | chr3_1:41859600-41859619 | None:intergenic | 35.0% |
| AATGACTATCCATGAGAGTT+AGG | - | chr3_1:41859602-41859621 | Msa0357880:intron | 35.0% | |
| ! | TTCTAGGGGAAAAAACAGTT+AGG | + | chr3_1:41859710-41859729 | None:intergenic | 35.0% |
| ! | CCTAAACACTCTTTTTCTAG+GGG | + | chr3_1:41859724-41859743 | None:intergenic | 35.0% |
| ! | CCCTAAACACTCTTTTTCTA+GGG | + | chr3_1:41859725-41859744 | None:intergenic | 35.0% |
| !! | CCCTAGAAAAAGAGTGTTTA+GGG | - | chr3_1:41859722-41859741 | Msa0357880:intron | 35.0% |
| !! | CCTAGAAAAAGAGTGTTTAG+GGG | - | chr3_1:41859723-41859742 | Msa0357880:intron | 35.0% |
| ! | CATTTTCCACCTCATTACAA+AGG | - | chr3_1:41859833-41859852 | Msa0357880:intron | 35.0% |
| CTCAAAAATCAAACTACCGT+TGG | - | chr3_1:41860082-41860101 | Msa0357880:intron | 35.0% | |
| !!! | AATTGCTTTTTAGGCAACCA+CGG | + | chr3_1:41860263-41860282 | None:intergenic | 35.0% |
| TCTAGATATAGTCACGATTG+AGG | - | chr3_1:41860339-41860358 | Msa0357880:intron | 35.0% | |
| GCTAAGGGGTAATGTATTAA+AGG | + | chr3_1:41860435-41860454 | None:intergenic | 35.0% | |
| AATCAAACCTGCATGATGTA+GGG | + | chr3_1:41860483-41860502 | None:intergenic | 35.0% | |
| AGAATCTTGCATGAAGCACA+TGG | + | chr3_1:41858146-41858165 | None:intergenic | 40.0% | |
| ! | GGAGCAAAGATGCAATCTTT+TGG | + | chr3_1:41858182-41858201 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCAAGAGA+AGG | + | chr3_1:41858212-41858231 | None:intergenic | 40.0% |
| ! | GTCGTAGTTCACAAGGTTTT+TGG | - | chr3_1:41858233-41858252 | Msa0357880:CDS | 40.0% |
| ! | GGAACACTAAAAAGAGTACG+AGG | + | chr3_1:41858290-41858309 | None:intergenic | 40.0% |
| GAGACCAAAAGAAAAAAGCG+AGG | - | chr3_1:41858460-41858479 | Msa0357880:intron | 40.0% | |
| TGTGAGTAGAACCCATTAAG+TGG | + | chr3_1:41858605-41858624 | None:intergenic | 40.0% | |
| !!! | AAATTGCACAGGGGCATTTT+TGG | + | chr3_1:41859125-41859144 | None:intergenic | 40.0% |
| TAATCCGAACTCAGTTAGGA+TGG | - | chr3_1:41859228-41859247 | Msa0357880:intron | 40.0% | |
| GCCGTTCTTAACCAAAAATC+CGG | - | chr3_1:41859351-41859370 | Msa0357880:intron | 40.0% | |
| ! | TAGCCTGAAAACCGGATTTT+TGG | + | chr3_1:41859365-41859384 | None:intergenic | 40.0% |
| TGATCAAGTAGCCTGAAAAC+CGG | + | chr3_1:41859373-41859392 | None:intergenic | 40.0% | |
| GATCAGATTGCTCCAAAACT+TGG | - | chr3_1:41859388-41859407 | Msa0357880:intron | 40.0% | |
| ! | TTATGGTCAAGGCCAAGTTT+TGG | + | chr3_1:41859403-41859422 | None:intergenic | 40.0% |
| !! | CCCCTAGAAAAAGAGTGTTT+AGG | - | chr3_1:41859721-41859740 | Msa0357880:intron | 40.0% |
| ! | CCCCTAAACACTCTTTTTCT+AGG | + | chr3_1:41859726-41859745 | None:intergenic | 40.0% |
| !!! | ATCTCAAGGGCATTTTCAGA+AGG | - | chr3_1:41859887-41859906 | Msa0357880:intron | 40.0% |
| GGTTGGATCGATTGTTGTAA+TGG | - | chr3_1:41859975-41859994 | Msa0357880:intron | 40.0% | |
| TTGAGTCGTGAAGTTCAACA+AGG | + | chr3_1:41860019-41860038 | None:intergenic | 40.0% | |
| !! | CAAACTACCGTTGGTTTGAT+TGG | - | chr3_1:41860091-41860110 | Msa0357880:intron | 40.0% |
| GATTGGACCAATCAAACCAA+CGG | + | chr3_1:41860101-41860120 | None:intergenic | 40.0% | |
| AAACAGTAGTTAACTGTCGC+TGG | - | chr3_1:41860224-41860243 | Msa0357880:intron | 40.0% | |
| !!! | ATTGCTTTTTAGGCAACCAC+GGG | + | chr3_1:41860262-41860281 | None:intergenic | 40.0% |
| ! | CTCAACTGGTTTAAGCTAAG+GGG | + | chr3_1:41860449-41860468 | None:intergenic | 40.0% |
| ! | GCTCAACTGGTTTAAGCTAA+GGG | + | chr3_1:41860450-41860469 | None:intergenic | 40.0% |
| ! | AGCTCAACTGGTTTAAGCTA+AGG | + | chr3_1:41860451-41860470 | None:intergenic | 40.0% |
| ATCAAACCTGCATGATGTAG+GGG | + | chr3_1:41860482-41860501 | None:intergenic | 40.0% | |
| GAATCAAACCTGCATGATGT+AGG | + | chr3_1:41860484-41860503 | None:intergenic | 40.0% | |
| AGATTGAGTGACCCAGTTTA+TGG | - | chr3_1:41860905-41860924 | Msa0357880:intron | 40.0% | |
| GTGTGATCTTGGTTGAATTG+TGG | + | chr3_1:41861049-41861068 | None:intergenic | 40.0% | |
| ATTGAGCAATCGCCAACTTC+CGG | - | chr3_1:41858674-41858693 | Msa0357880:intron | 45.0% | |
| TCAAACCTGCATGATGTAGG+GGG | + | chr3_1:41860481-41860500 | None:intergenic | 45.0% | |
| AGGATCTTCCGATTCAGCAA+AGG | - | chr3_1:41860843-41860862 | Msa0357880:intron | 45.0% | |
| GGATCTTCCGATTCAGCAAA+GGG | - | chr3_1:41860844-41860863 | Msa0357880:intron | 45.0% | |
| CTCCAGCACAACCATAAACT+GGG | + | chr3_1:41860919-41860938 | None:intergenic | 45.0% | |
| TCTTGGTTGAATTGTGGTGC+TGG | + | chr3_1:41861043-41861062 | None:intergenic | 45.0% | |
| !! | AGGTATTGAGCGAGTTCATC+TGG | + | chr3_1:41861085-41861104 | None:intergenic | 45.0% |
| !! | TAAAAAAATACTAATAAAAA+GGG | + | chr3_1:41858826-41858845 | None:intergenic | 5.0% |
| !! | TTAAAAAAATACTAATAAAA+AGG | + | chr3_1:41858827-41858846 | None:intergenic | 5.0% |
| !!! | ATAGATTATTTTATAATTAT+CGG | - | chr3_1:41858904-41858923 | Msa0357880:intron | 5.0% |
| !!! | GTTTTTGGCGCTAGCAACGT+TGG | - | chr3_1:41858248-41858267 | Msa0357880:CDS | 50.0% |
| CAACGTTGGCAGAATGTTGC+AGG | - | chr3_1:41858262-41858281 | Msa0357880:CDS | 50.0% | |
| CAAACCTGCATGATGTAGGG+GGG | + | chr3_1:41860480-41860499 | None:intergenic | 50.0% | |
| CTTCCGATTCAGCAAAGGGA+AGG | - | chr3_1:41860848-41860867 | Msa0357880:intron | 50.0% | |
| GCACCTTCCCTTTGCTGAAT+CGG | + | chr3_1:41860854-41860873 | None:intergenic | 50.0% | |
| GACCCAGTTTATGGTTGTGC+TGG | - | chr3_1:41860914-41860933 | Msa0357880:intron | 50.0% | |
| GCTCCAGCACAACCATAAAC+TGG | + | chr3_1:41860920-41860939 | None:intergenic | 50.0% | |
| TTGCTCGAGCAACTGCAAGT+TGG | + | chr3_1:41860982-41861001 | None:intergenic | 50.0% | |
| GGCGCGCGAGAATGACATAT+GGG | + | chr3_1:41859089-41859108 | None:intergenic | 55.0% | |
| GGGCGCGCGAGAAATGAATA+TGG | - | chr3_1:41859919-41859938 | Msa0357880:intron | 55.0% | |
| CTGGATGTAAGAGCAACCCG+TGG | - | chr3_1:41860243-41860262 | Msa0357880:intron | 55.0% | |
| ! | GGGGGGTTTGATAGCTCAAC+TGG | + | chr3_1:41860463-41860482 | None:intergenic | 55.0% |
| CAAACCCCCCTACATCATGC+AGG | - | chr3_1:41860473-41860492 | Msa0357880:intron | 55.0% | |
| GGGCGCGCGAGAATGACATA+TGG | + | chr3_1:41859090-41859109 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 41858098 | 41861126 | 41858098 | ID=Msa0357880;Name=Msa0357880 |
| chr3_1 | mRNA | 41858098 | 41861126 | 41858098 | ID=Msa0357880-mRNA-1;Parent=Msa0357880;Name=Msa0357880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|155 |
| chr3_1 | exon | 41860941 | 41861126 | 41860941 | ID=Msa0357880-mRNA-1:exon:7257;Parent=Msa0357880-mRNA-1 |
| chr3_1 | exon | 41858098 | 41858379 | 41858098 | ID=Msa0357880-mRNA-1:exon:7256;Parent=Msa0357880-mRNA-1 |
| chr3_1 | CDS | 41860941 | 41861126 | 41860941 | ID=Msa0357880-mRNA-1:cds;Parent=Msa0357880-mRNA-1 |
| chr3_1 | CDS | 41858098 | 41858379 | 41858098 | ID=Msa0357880-mRNA-1:cds;Parent=Msa0357880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
