AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357820 MtrunA17_Chr5g0437571 75.694 144 35 0 11 154 1 144 6.81e-79 231
Msa0357820 MtrunA17_Chr3g0114061 64.828 145 43 3 11 151 1 141 1.11e-60 184
Msa0357820 MtrunA17_Chr3g0106101 56.291 151 55 2 12 151 3 153 1.97e-55 172
Msa0357820 MtrunA17_Chr2g0311601 62.500 128 40 1 9 136 6 125 6.26e-53 165
Msa0357820 MtrunA17_Chr4g0043421 64.912 114 40 0 9 122 8 121 8.22e-51 160
Msa0357820 MtrunA17_Chr4g0030001 58.772 114 46 1 15 127 23 136 3.01e-45 146
Msa0357820 MtrunA17_Chr1g0200201 60.360 111 44 0 17 127 73 183 1.66e-43 143
Msa0357820 MtrunA17_Chr3g0115431 61.538 104 40 0 13 116 6 109 1.72e-42 140
Msa0357820 MtrunA17_Chr5g0438091 51.128 133 58 1 6 131 22 154 2.72e-42 139
Msa0357820 MtrunA17_Chr7g0227511 62.136 103 39 0 14 116 9 111 9.56e-41 134
Msa0357820 MtrunA17_Chr3g0117121 62.857 105 39 0 12 116 6 110 1.58e-40 134
Msa0357820 MtrunA17_Chr4g0058651 62.136 103 39 0 14 116 9 111 2.58e-40 134
Msa0357820 MtrunA17_Chr6g0449641 51.639 122 59 0 14 135 7 128 3.72e-40 132
Msa0357820 MtrunA17_Chr6g0449651 59.223 103 42 0 14 116 65 167 1.58e-39 132
Msa0357820 MtrunA17_Chr5g0402611 52.273 132 60 2 12 140 4 135 9.68e-39 133
Msa0357820 MtrunA17_Chr3g0129071 57.407 108 46 0 15 122 46 153 3.41e-38 130
Msa0357820 MtrunA17_Chr5g0437401 52.033 123 57 1 13 135 8 128 4.61e-38 127
Msa0357820 MtrunA17_Chr3g0113891 59.406 101 41 0 13 113 11 111 8.73e-38 127
Msa0357820 MtrunA17_Chr7g0225111 50.450 111 55 0 15 125 4 114 1.52e-37 124
Msa0357820 MtrunA17_Chr3g0097221 54.286 105 48 0 12 116 3 107 3.60e-37 129
Msa0357820 MtrunA17_Chr5g0444351 48.718 117 60 0 17 133 6 122 1.23e-36 123
Msa0357820 MtrunA17_Chr8g0353981 54.237 118 52 1 12 129 3 118 1.21e-34 120
Msa0357820 MtrunA17_Chr5g0432451 58.824 102 42 0 15 116 42 143 3.70e-34 119
Msa0357820 MtrunA17_Chr1g0184281 52.381 105 49 1 12 115 11 115 7.37e-34 118
Msa0357820 MtrunA17_Chr5g0435641 41.333 150 78 4 11 153 1 147 3.26e-33 115
Msa0357820 MtrunA17_Chr7g0260971 51.429 105 50 1 15 118 13 117 1.23e-32 115
Msa0357820 MtrunA17_Chr6g0460951 39.437 142 75 3 15 153 39 172 3.44e-31 111
Msa0357820 MtrunA17_Chr7g0261031 51.402 107 50 2 11 115 2 108 6.03e-31 111
Msa0357820 MtrunA17_Chr8g0351721 47.934 121 60 2 13 132 15 133 1.60e-30 109
Msa0357820 MtrunA17_Chr8g0351701 53.125 96 44 1 16 110 23 118 1.93e-30 110
Msa0357820 MtrunA17_Chr8g0374591 46.535 101 54 0 16 116 8 108 3.21e-30 106
Msa0357820 MtrunA17_Chr1g0184271 40.714 140 80 2 16 154 12 149 3.65e-30 109
Msa0357820 MtrunA17_Chr7g0245871 50.980 102 49 1 16 116 27 128 1.25e-29 108
Msa0357820 MtrunA17_Chr8g0374601 45.536 112 59 1 16 127 26 135 1.79e-29 108
Msa0357820 MtrunA17_Chr7g0245861 52.688 93 41 2 13 102 9 101 1.94e-27 99.8
Msa0357820 MtrunA17_Chr6g0460941 46.591 88 46 1 16 102 7 94 3.82e-25 92.4
Msa0357820 MtrunA17_Chr6g0452691 37.719 114 70 1 11 123 4 117 6.60e-25 94.4
Msa0357820 MtrunA17_Chr8g0374581 42.478 113 62 2 16 127 8 118 2.93e-23 91.3
Msa0357820 MtrunA17_Chr6g0452661 34.234 111 72 1 14 123 7 117 3.07e-21 86.7
Msa0357820 MtrunA17_Chr6g0452671 31.496 127 87 0 17 143 12 138 4.04e-21 85.1
Msa0357820 MtrunA17_Chr2g0330201 38.000 100 62 0 17 116 20 119 4.77e-21 86.7
Msa0357820 MtrunA17_Chr4g0059901 41.935 93 54 0 17 109 11 103 6.95e-21 85.9
Msa0357820 MtrunA17_Chr4g0040831 37.391 115 66 1 17 131 16 124 1.55e-20 83.6
Msa0357820 MtrunA17_Chr8g0342351 35.000 100 65 0 17 116 13 112 1.13e-19 82.4
Msa0357820 MtrunA17_Chr2g0326051 55.224 67 30 0 61 127 5 71 2.30e-19 78.6
Msa0357820 MtrunA17_Chr2g0326041 64.583 48 17 0 15 62 32 79 9.53e-19 75.9
Msa0357820 MtrunA17_Chr4g0055441 32.456 114 76 1 17 129 3 116 9.91e-19 77.8
Msa0357820 MtrunA17_Chr4g0046201 37.634 93 58 0 11 103 1 93 1.30e-18 79.7
Msa0357820 MtrunA17_Chr5g0439111 40.964 83 48 1 14 95 7 89 2.07e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357820 AT2G30130.1 63.910 133 44 1 13 141 5 137 4.60e-58 179
Msa0357820 AT2G28500.1 50.714 140 68 1 15 154 54 192 5.09e-48 155
Msa0357820 AT1G07900.1 63.889 108 37 1 15 122 32 137 1.06e-47 153
Msa0357820 AT1G31320.1 59.350 123 50 0 7 129 4 126 5.39e-45 145
Msa0357820 AT1G16530.1 60.748 107 41 1 15 120 13 119 3.27e-43 140
Msa0357820 AT5G63090.4 62.264 106 39 1 14 118 9 114 1.63e-40 134
Msa0357820 AT5G63090.3 62.264 106 39 1 14 118 9 114 1.63e-40 134
Msa0357820 AT5G63090.2 62.264 106 39 1 14 118 9 114 1.63e-40 134
Msa0357820 AT5G63090.1 62.264 106 39 1 14 118 9 114 1.63e-40 134
Msa0357820 AT3G27650.1 60.194 103 41 0 14 116 37 139 4.72e-40 132
Msa0357820 AT3G26620.1 49.600 125 54 1 17 141 6 121 8.39e-40 130
Msa0357820 AT3G26660.1 57.000 100 43 0 17 116 6 105 2.67e-39 129
Msa0357820 AT2G30340.1 52.941 119 56 0 15 133 51 169 1.32e-38 132
Msa0357820 AT2G30340.2 52.941 119 56 0 15 133 52 170 1.35e-38 132
Msa0357820 AT2G23660.2 51.695 118 54 2 14 130 3 118 4.50e-38 132
Msa0357820 AT2G23660.3 51.695 118 54 2 14 130 3 118 4.50e-38 132
Msa0357820 AT2G23660.1 51.695 118 54 2 14 130 3 118 4.50e-38 132
Msa0357820 AT3G11090.1 54.310 116 52 1 14 128 9 124 1.65e-37 126
Msa0357820 AT5G66870.1 52.459 122 57 1 12 132 3 124 6.36e-37 129
Msa0357820 AT1G65620.1 60.000 105 42 0 12 116 5 109 7.38e-36 123
Msa0357820 AT1G65620.4 60.000 105 42 0 12 116 5 109 7.38e-36 123
Msa0357820 AT1G65620.3 60.000 105 42 0 12 116 5 109 7.38e-36 123
Msa0357820 AT1G65620.5 60.000 105 42 0 12 116 5 109 7.38e-36 123
Msa0357820 AT1G65620.2 60.000 105 42 0 12 116 5 109 7.38e-36 123
Msa0357820 AT2G40470.2 60.784 102 40 0 15 116 19 120 3.51e-35 121
Msa0357820 AT2G40470.1 60.784 102 40 0 15 116 44 145 5.37e-35 122
Msa0357820 AT4G00210.1 48.031 127 55 3 11 131 1 122 1.36e-33 118
Msa0357820 AT3G03760.1 52.427 103 48 1 15 116 50 152 3.92e-33 118
Msa0357820 AT2G42430.1 53.846 104 47 1 14 116 13 116 4.38e-33 117
Msa0357820 AT3G50510.1 46.018 113 59 1 4 116 2 112 1.33e-31 112
Msa0357820 AT3G50510.2 46.018 113 59 1 4 116 2 112 1.33e-31 112
Msa0357820 AT2G45410.1 45.238 126 65 2 19 140 19 144 2.15e-31 111
Msa0357820 AT2G42440.1 43.750 128 69 3 11 135 1 128 6.27e-31 112
Msa0357820 AT2G31310.1 40.714 140 73 3 11 140 1 140 1.74e-29 106
Msa0357820 AT3G58190.1 49.495 99 49 1 16 113 11 109 1.77e-29 107
Msa0357820 AT5G06080.1 41.600 125 69 2 12 132 3 127 1.07e-27 101
Msa0357820 AT2G45420.1 46.154 104 55 1 19 121 40 143 4.43e-27 102
Msa0357820 AT4G00220.1 48.077 104 53 1 19 121 20 123 5.20e-27 101
Msa0357820 AT5G35900.1 40.777 103 61 0 17 119 6 108 4.52e-24 93.2
Msa0357820 AT3G13850.1 36.800 125 65 3 17 127 37 161 2.87e-23 92.4
Msa0357820 AT1G72980.1 41.176 102 60 0 15 116 12 113 1.18e-22 89.7
Msa0357820 AT3G47870.1 38.889 90 55 0 10 99 30 119 2.19e-18 80.5
Msa0357820 AT1G06280.1 45.455 77 42 0 17 93 25 101 2.69e-18 78.2
Msa0357820 AT2G19820.1 38.542 96 58 1 15 109 11 106 1.65e-17 73.9
Msa0357820 AT4G22700.1 40.659 91 52 2 17 106 6 95 2.89e-15 70.1
Msa0357820 AT5G15060.1 41.892 74 39 2 17 87 18 90 8.57e-13 62.4
Msa0357820 AT1G36000.1 29.348 92 65 0 11 102 4 95 1.19e-12 61.6

Find 22 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGAACTACGACAAACTTT+TGG 0.258263 3_1:-41673842 None:intergenic
AGATTGAGTGACCCAGTTTA+TGG 0.284882 3_1:+41676655 Msa0357820:CDS
AACAAGAAATATCATAATTA+AGG 0.293198 3_1:-41676852 None:intergenic
GGAGCAAAGATGCAATCTTT+TGG 0.343297 3_1:-41673798 None:intergenic
GCTCCAGCACAACCATAAAC+TGG 0.357617 3_1:-41676667 None:intergenic
CATATATCACTTGCAAAATC+AGG 0.363361 3_1:+41676690 Msa0357820:CDS
GCACCTTCCCTTTGCTGAAT+CGG 0.373246 3_1:-41676601 None:intergenic
AGGTATTGAGCGAGTTCATC+TGG 0.379557 3_1:-41676832 None:intergenic
CAACGTTGGCAGAATGTTGC+AGG 0.398392 3_1:+41673881 Msa0357820:CDS
GGTTCAAGAGAAGGAAAATA+AGG 0.429065 3_1:-41673819 None:intergenic
TCTTGGTTGAATTGTGGTGC+TGG 0.452174 3_1:-41676790 None:intergenic
GACCCAGTTTATGGTTGTGC+TGG 0.452179 3_1:+41676664 Msa0357820:CDS
TAAAGTAAGATGTGTGATCT+TGG 0.468213 3_1:-41676807 None:intergenic
GGATCTTCCGATTCAGCAAA+GGG 0.503129 3_1:+41676594 Msa0357820:intron
TTGCTCGAGCAACTGCAAGT+TGG 0.520454 3_1:-41676729 None:intergenic
CTCCAGCACAACCATAAACT+GGG 0.573541 3_1:-41676666 None:intergenic
GTGTGATCTTGGTTGAATTG+TGG 0.577677 3_1:-41676796 None:intergenic
AGGATCTTCCGATTCAGCAA+AGG 0.581668 3_1:+41676593 Msa0357820:intron
AAAGTTTGTCGTAGTTCACA+AGG 0.596548 3_1:+41673845 Msa0357820:CDS
AGAATCTTGCATGAAGCACA+TGG 0.616501 3_1:-41673762 None:intergenic
CTTCCGATTCAGCAAAGGGA+AGG 0.633097 3_1:+41676598 Msa0357820:CDS
GAAAAGAAAATTGTAAACAG+AGG 0.681415 3_1:-41673714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATACTACTAAAAA+AGG - chr3_1:41674428-41674447 None:intergenic 10.0%
!! ATTATATAAACAACTAAAAA+GGG - chr3_1:41674462-41674481 None:intergenic 10.0%
!! TATTATATAAACAACTAAAA+AGG - chr3_1:41674463-41674482 None:intergenic 10.0%
!!! GAGTATTATTTTATAATTAT+CGG + chr3_1:41674631-41674650 Msa0357820:intron 10.0%
!!! TTTTAATTTTACTGATTTTA+TGG - chr3_1:41675143-41675162 None:intergenic 10.0%
!! TTAATAAAATTGAGAAATAT+AGG - chr3_1:41675245-41675264 None:intergenic 10.0%
!!! AAAAAAAAAAAAAAAGTGTT+TGG - chr3_1:41676038-41676057 None:intergenic 10.0%
!! TAAATAATTAACCATTAAAA+AGG - chr3_1:41676315-41676334 None:intergenic 10.0%
!!! ATAAGTGTTTATTATTTTTT+AGG + chr3_1:41676357-41676376 Msa0357820:intron 10.0%
!!! TAAGTGTTTATTATTTTTTA+GGG + chr3_1:41676358-41676377 Msa0357820:intron 10.0%
!! TTAATCATCTAAAAAGTAAA+TGG - chr3_1:41673930-41673949 None:intergenic 15.0%
!!! ATTTTTTGTAGACATATTTT+AGG + chr3_1:41674111-41674130 Msa0357820:intron 15.0%
!!! TCTTTTATGTTTTTTATATC+CGG - chr3_1:41674314-41674333 None:intergenic 15.0%
!! GTATTAAATACAAATTCATA+AGG - chr3_1:41674341-41674360 None:intergenic 15.0%
!! TAAAAAAGAAAGCTAAAAAA+AGG - chr3_1:41674397-41674416 None:intergenic 15.0%
!!! TTTTTGAAAGAGTATTTTTT+TGG - chr3_1:41675199-41675218 None:intergenic 15.0%
!!! GTTTGATGATTTTTTTAAAT+TGG - chr3_1:41675931-41675950 None:intergenic 15.0%
!!! ATGATTTAAAACCTTTTTAA+TGG + chr3_1:41676301-41676320 Msa0357820:intron 15.0%
!!! AAGTGTTTATTATTTTTTAG+GGG + chr3_1:41676359-41676378 Msa0357820:intron 15.0%
!! AACAAGAAATATCATAATTA+AGG - chr3_1:41676855-41676874 None:intergenic 15.0%
!! CAATATAAACAACTAATCTT+GGG - chr3_1:41673982-41674001 None:intergenic 20.0%
!! ACAATATAAACAACTAATCT+TGG - chr3_1:41673983-41674002 None:intergenic 20.0%
!!! TAGTTTGTGAATAAAATGTT+TGG + chr3_1:41674048-41674067 Msa0357820:intron 20.0%
!!! ATTTTCAGAAAAGTAACTAT+TGG + chr3_1:41674190-41674209 Msa0357820:intron 20.0%
!! GAATAGAAAAAACTTAGAAA+AGG - chr3_1:41674370-41674389 None:intergenic 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG + chr3_1:41674506-41674525 Msa0357820:intron 20.0%
!!! ATCGGATTTTAAAATATAGT+TGG + chr3_1:41674649-41674668 Msa0357820:intron 20.0%
!!! AGTCATCAATTTATATGTTT+TGG - chr3_1:41674784-41674803 None:intergenic 20.0%
!! ATTAAAATCTAAATTGCACA+GGG - chr3_1:41674860-41674879 None:intergenic 20.0%
!! TATTAAAATCTAAATTGCAC+AGG - chr3_1:41674861-41674880 None:intergenic 20.0%
!!! TTAGATTTTAATATCCGAAT+TGG + chr3_1:41674868-41674887 Msa0357820:intron 20.0%
!!! TTTTGAACATATTTGTAACA+TGG - chr3_1:41675380-41675399 None:intergenic 20.0%
!! TCGGATTATAAAATACAAAT+TGG + chr3_1:41675524-41675543 Msa0357820:intron 20.0%
!!! TTTAAAATCTAACAATCTCA+AGG + chr3_1:41675596-41675615 Msa0357820:intron 20.0%
!! TTAAAATCTAACAATCTCAA+GGG + chr3_1:41675597-41675616 Msa0357820:intron 20.0%
!! TAGTCTAAATTGATTGAATA+TGG + chr3_1:41675677-41675696 Msa0357820:intron 20.0%
!!! TTTTTAATTCATCCACAAAA+TGG + chr3_1:41675846-41675865 Msa0357820:intron 20.0%
!!! AAACTGATTTAAAAAGTGAT+TGG - chr3_1:41675906-41675925 None:intergenic 20.0%
!!! TATTTAGGAAATTGCTTTTT+AGG - chr3_1:41675995-41676014 None:intergenic 20.0%
!! AGCAATTTCCTAAATATTTA+CGG + chr3_1:41675999-41676018 Msa0357820:intron 20.0%
!!! TTTTTTGTTTTGCAATGAAA+AGG + chr3_1:41676259-41676278 Msa0357820:intron 20.0%
!! TTTTCGAAGAAAAAAATGAG+TGG + chr3_1:41673732-41673751 Msa0357820:CDS 25.0%
!! TTTTCTTTTGGTCTCAAAAA+AGG - chr3_1:41674074-41674093 None:intergenic 25.0%
! TATATAATAATTACTCCCTC+TGG + chr3_1:41674474-41674493 Msa0357820:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr3_1:41674570-41674589 None:intergenic 25.0%
!! ATTTTGCTTATAAATGAGAC+CGG + chr3_1:41674605-41674624 Msa0357820:intron 25.0%
! TTATAAAATAATACTCCCTC+CGG - chr3_1:41674627-41674646 None:intergenic 25.0%
! TACAAGTAGAATTGTCATAT+AGG + chr3_1:41674725-41674744 Msa0357820:intron 25.0%
! ATACTAAGCAAATCATGATT+GGG - chr3_1:41674760-41674779 None:intergenic 25.0%
! TATACTAAGCAAATCATGAT+TGG - chr3_1:41674761-41674780 None:intergenic 25.0%
! TTAAAATCTAAATTGCACAG+GGG - chr3_1:41674859-41674878 None:intergenic 25.0%
!! AAATGAGTTTTTCACCAATT+CGG - chr3_1:41674885-41674904 None:intergenic 25.0%
! TATATAATCTGAACTCAGTT+AGG + chr3_1:41674978-41674997 Msa0357820:intron 25.0%
! AATAACTATTCATGAGAGTT+AGG - chr3_1:41675040-41675059 None:intergenic 25.0%
!!! CTCTCATGAATAGTTATTTT+AGG + chr3_1:41675042-41675061 Msa0357820:intron 25.0%
!!! TTTTACTGATTTTATGGTCA+AGG - chr3_1:41675137-41675156 None:intergenic 25.0%
!!! TAACATGGATAGTCATTTTA+AGG - chr3_1:41675365-41675384 None:intergenic 25.0%
!! ATTTTCGGAAGGAAAAAAAT+AGG + chr3_1:41675621-41675640 Msa0357820:intron 25.0%
!! TTTTCGGAAGGAAAAAAATA+GGG + chr3_1:41675622-41675641 Msa0357820:intron 25.0%
! CTAAATTGATTGAATATGGT+TGG + chr3_1:41675681-41675700 Msa0357820:intron 25.0%
! GACTCAACTCATAAAAATTT+GGG + chr3_1:41675755-41675774 Msa0357820:intron 25.0%
!!! TTGATTTTTGAGCAATTAGA+GGG - chr3_1:41675797-41675816 None:intergenic 25.0%
!!! TTTGATTTTTGAGCAATTAG+AGG - chr3_1:41675798-41675817 None:intergenic 25.0%
! TGGATGAATTAAAAAGTGAT+TGG - chr3_1:41675841-41675860 None:intergenic 25.0%
! GCAATTTCCTAAATATTTAC+GGG + chr3_1:41676000-41676019 Msa0357820:intron 25.0%
! TCATTAACCCGTAAATATTT+AGG - chr3_1:41676010-41676029 None:intergenic 25.0%
! GTAATGTATTAAAGGTTTAG+GGG - chr3_1:41676177-41676196 None:intergenic 25.0%
! GGTAATGTATTAAAGGTTTA+GGG - chr3_1:41676178-41676197 None:intergenic 25.0%
!!! TGTTGTACTTTTTTACTATG+CGG - chr3_1:41676452-41676471 None:intergenic 25.0%
!! AAAAAGTACAACAATGTTGT+TGG + chr3_1:41676459-41676478 Msa0357820:intron 25.0%
! GCAATTAGCTATGAAGTTTT+AGG - chr3_1:41674144-41674163 None:intergenic 30.0%
! TATTGGTTGTTACCACTTAA+TGG + chr3_1:41674207-41674226 Msa0357820:intron 30.0%
ATTGGTTGTTACCACTTAAT+GGG + chr3_1:41674208-41674227 Msa0357820:intron 30.0%
!!! TGTTTTTTATATCCGGAAGT+TGG - chr3_1:41674307-41674326 None:intergenic 30.0%
TTCATAAACACCCTATTTCA+AGG + chr3_1:41674909-41674928 Msa0357820:intron 30.0%
TCATAAACACCCTATTTCAA+GGG + chr3_1:41674910-41674929 Msa0357820:intron 30.0%
! CTGTTTTATCCCTTGAAATA+GGG - chr3_1:41674922-41674941 None:intergenic 30.0%
! ACTGTTTTATCCCTTGAAAT+AGG - chr3_1:41674923-41674942 None:intergenic 30.0%
TATATAATCCGAACTCAGTT+AGG + chr3_1:41674949-41674968 Msa0357820:intron 30.0%
! GATGGATCATTAACATTTTC+TGG + chr3_1:41675000-41675019 Msa0357820:intron 30.0%
ATTATTCTTCCTAACTCTCA+TGG - chr3_1:41675337-41675356 None:intergenic 30.0%
TCCGAAAACCTCAAAAAATA+GGG - chr3_1:41675509-41675528 None:intergenic 30.0%
ATCCGAAAACCTCAAAAAAT+AGG - chr3_1:41675510-41675529 None:intergenic 30.0%
! TGAGTTTTTCCTTTGTAATG+AGG - chr3_1:41675568-41675587 None:intergenic 30.0%
TACAAAGGAAAAACTCAGTT+CGG + chr3_1:41675571-41675590 Msa0357820:intron 30.0%
CGACTCAACTCATAAAAATT+TGG + chr3_1:41675754-41675773 Msa0357820:intron 30.0%
AAATTTGGGTGTAGTTCATT+AGG + chr3_1:41675769-41675788 Msa0357820:intron 30.0%
! GACACTTAATAACCATTTTG+TGG - chr3_1:41675861-41675880 None:intergenic 30.0%
!! TCGTTCGACAATTTTTAGAT+TGG + chr3_1:41675879-41675898 Msa0357820:intron 30.0%
! ATATTTACGGGTTAATGAGT+CGG + chr3_1:41676012-41676031 Msa0357820:intron 30.0%
!! TAGGGGTCAAATTTTGATAA+GGG - chr3_1:41676160-41676179 None:intergenic 30.0%
!! TTAGGGGTCAAATTTTGATA+AGG - chr3_1:41676161-41676180 None:intergenic 30.0%
GGGTAATGTATTAAAGGTTT+AGG - chr3_1:41676179-41676198 None:intergenic 30.0%
! TTTTACTATGCGGAAAAGTA+AGG - chr3_1:41676442-41676461 None:intergenic 30.0%
AAGAACACAATGATTGATCA+AGG - chr3_1:41676510-41676529 None:intergenic 30.0%
! TTTTTCTCATACAATGCATC+AGG + chr3_1:41676573-41676592 Msa0357820:intron 30.0%
! CTGATTTTGCAAGTGATATA+TGG - chr3_1:41676692-41676711 None:intergenic 30.0%
CATATATCACTTGCAAAATC+AGG + chr3_1:41676690-41676709 Msa0357820:CDS 30.0%
TAAAGTAAGATGTGTGATCT+TGG - chr3_1:41676810-41676829 None:intergenic 30.0%
! GAGCAAAGATGCAATCTTTT+GGG - chr3_1:41673800-41673819 None:intergenic 35.0%
GGTTCAAGAGAAGGAAAATA+AGG - chr3_1:41673822-41673841 None:intergenic 35.0%
! TGAACTACGACAAACTTTTG+GGG - chr3_1:41673843-41673862 None:intergenic 35.0%
! GTGAACTACGACAAACTTTT+GGG - chr3_1:41673844-41673863 None:intergenic 35.0%
! TGTGAACTACGACAAACTTT+TGG - chr3_1:41673845-41673864 None:intergenic 35.0%
AAAGTTTGTCGTAGTTCACA+AGG + chr3_1:41673845-41673864 Msa0357820:CDS 35.0%
!!! CATTCCTCGCTTTTTTCTTT+TGG - chr3_1:41674086-41674105 None:intergenic 35.0%
TTGGTTGTTACCACTTAATG+GGG + chr3_1:41674209-41674228 Msa0357820:intron 35.0%
! CCATCGGATCACAATTTTTA+TGG - chr3_1:41674253-41674272 None:intergenic 35.0%
CCATAAAAATTGTGATCCGA+TGG + chr3_1:41674250-41674269 Msa0357820:intron 35.0%
GTTCTCAAATTGTTCACCAT+CGG - chr3_1:41674269-41674288 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG - chr3_1:41674492-41674511 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG - chr3_1:41674493-41674512 None:intergenic 35.0%
CATTGTAACTTTAACAGTCG+TGG - chr3_1:41674691-41674710 None:intergenic 35.0%
TAAGCAAATCATGATTGGGT+TGG - chr3_1:41674756-41674775 None:intergenic 35.0%
!! GCATTTTTGGAAAAAGCACA+AGG - chr3_1:41674837-41674856 None:intergenic 35.0%
TAATCCATCCTAACTGAGTT+CGG - chr3_1:41674960-41674979 None:intergenic 35.0%
TAATCTGAACTCAGTTAGGA+TGG + chr3_1:41674982-41675001 Msa0357820:intron 35.0%
!!! ACCGGATTTTTGGTTAAGAA+CGG - chr3_1:41675078-41675097 None:intergenic 35.0%
! TAACCAAAAATCCGGTTTTC+AGG + chr3_1:41675082-41675101 Msa0357820:intron 35.0%
!! CTCTCATGGATAGTCATTTT+AGG - chr3_1:41675323-41675342 None:intergenic 35.0%
AATGACTATCCATGAGAGTT+AGG + chr3_1:41675325-41675344 Msa0357820:intron 35.0%
! TTTCTAGGGGAAAAACAGTT+AGG - chr3_1:41675433-41675452 None:intergenic 35.0%
! CCTAAACACTCTTTTTCTAG+GGG - chr3_1:41675446-41675465 None:intergenic 35.0%
! CCCTAAACACTCTTTTTCTA+GGG - chr3_1:41675447-41675466 None:intergenic 35.0%
!! CCCTAGAAAAAGAGTGTTTA+GGG + chr3_1:41675444-41675463 Msa0357820:intron 35.0%
!! CCTAGAAAAAGAGTGTTTAG+GGG + chr3_1:41675445-41675464 Msa0357820:intron 35.0%
!!! GCCCTATTTTTTGAGGTTTT+CGG + chr3_1:41675505-41675524 Msa0357820:intron 35.0%
! CATTTTCCACCTCATTACAA+AGG + chr3_1:41675556-41675575 Msa0357820:intron 35.0%
! GTTTTTCCTTTGTAATGAGG+TGG - chr3_1:41675565-41675584 None:intergenic 35.0%
!!! AACAATCTCAAGGGCATTTT+CGG + chr3_1:41675606-41675625 Msa0357820:intron 35.0%
CTCAAAAATCAAACTACCGT+TGG + chr3_1:41675805-41675824 Msa0357820:intron 35.0%
!!! AATTGCTTTTTAGGCAACCA+CGG - chr3_1:41675986-41676005 None:intergenic 35.0%
TCTAGATATAGTCACGATTG+AGG + chr3_1:41676064-41676083 Msa0357820:intron 35.0%
GCTAAGGGGTAATGTATTAA+AGG - chr3_1:41676185-41676204 None:intergenic 35.0%
AATCAAACCTGCATGATGTA+GGG - chr3_1:41676233-41676252 None:intergenic 35.0%
AGAATCTTGCATGAAGCACA+TGG - chr3_1:41673765-41673784 None:intergenic 40.0%
! GGAGCAAAGATGCAATCTTT+TGG - chr3_1:41673801-41673820 None:intergenic 40.0%
!!! AACTTTTGGGGTTCAAGAGA+AGG - chr3_1:41673831-41673850 None:intergenic 40.0%
! GTCGTAGTTCACAAGGTTTT+TGG + chr3_1:41673852-41673871 Msa0357820:CDS 40.0%
! GGAACACTAAAAAGAGTACG+AGG - chr3_1:41673909-41673928 None:intergenic 40.0%
GAGACCAAAAGAAAAAAGCG+AGG + chr3_1:41674079-41674098 Msa0357820:intron 40.0%
TTGCTTATAAATGAGACCGG+AGG + chr3_1:41674608-41674627 Msa0357820:intron 40.0%
TGCTTATAAATGAGACCGGA+GGG + chr3_1:41674609-41674628 Msa0357820:intron 40.0%
!!! AAATTGCACAGGGGCATTTT+TGG - chr3_1:41674850-41674869 None:intergenic 40.0%
TAATCCGAACTCAGTTAGGA+TGG + chr3_1:41674953-41674972 Msa0357820:intron 40.0%
GCCGTTCTTAACCAAAAATC+CGG + chr3_1:41675074-41675093 Msa0357820:intron 40.0%
! TAGCCTGAAAACCGGATTTT+TGG - chr3_1:41675088-41675107 None:intergenic 40.0%
TGATCAAGTAGCCTGAAAAC+CGG - chr3_1:41675096-41675115 None:intergenic 40.0%
GATCAGATTGCTCCAAAACT+TGG + chr3_1:41675111-41675130 Msa0357820:intron 40.0%
! TTATGGTCAAGGCCAAGTTT+TGG - chr3_1:41675126-41675145 None:intergenic 40.0%
!! CCCCTAGAAAAAGAGTGTTT+AGG + chr3_1:41675443-41675462 Msa0357820:intron 40.0%
! CCCCTAAACACTCTTTTTCT+AGG - chr3_1:41675448-41675467 None:intergenic 40.0%
! GGCGCGTTACTTGAATTTTT+CGG - chr3_1:41675488-41675507 None:intergenic 40.0%
GGTTGGATCGATTGTTGTAA+TGG + chr3_1:41675698-41675717 Msa0357820:intron 40.0%
TTGAGTCGTGAAGTTCAACA+AGG - chr3_1:41675742-41675761 None:intergenic 40.0%
!! CAAACTACCGTTGGTTTGAT+TGG + chr3_1:41675814-41675833 Msa0357820:intron 40.0%
GATTGGACCAATCAAACCAA+CGG - chr3_1:41675824-41675843 None:intergenic 40.0%
AAACAGTAGTTAACTGTCGC+TGG + chr3_1:41675947-41675966 Msa0357820:intron 40.0%
!!! ATTGCTTTTTAGGCAACCAC+GGG - chr3_1:41675985-41676004 None:intergenic 40.0%
! CTCAACTGGTTTAAGCTAAG+GGG - chr3_1:41676199-41676218 None:intergenic 40.0%
! GCTCAACTGGTTTAAGCTAA+GGG - chr3_1:41676200-41676219 None:intergenic 40.0%
! AGCTCAACTGGTTTAAGCTA+AGG - chr3_1:41676201-41676220 None:intergenic 40.0%
ATCAAACCTGCATGATGTAG+GGG - chr3_1:41676232-41676251 None:intergenic 40.0%
GAATCAAACCTGCATGATGT+AGG - chr3_1:41676234-41676253 None:intergenic 40.0%
AGATTGAGTGACCCAGTTTA+TGG + chr3_1:41676655-41676674 Msa0357820:CDS 40.0%
GTGTGATCTTGGTTGAATTG+TGG - chr3_1:41676799-41676818 None:intergenic 40.0%
GTGAGTAGAACCCCATTAAG+TGG - chr3_1:41674222-41674241 None:intergenic 45.0%
ATTGAGCAATCGCCAACTTC+CGG + chr3_1:41674292-41674311 Msa0357820:intron 45.0%
!!! GTAACGCGCCCTATTTTTTG+AGG + chr3_1:41675498-41675517 Msa0357820:intron 45.0%
!!! ATCTCAAGGGCATTTTCGGA+AGG + chr3_1:41675610-41675629 Msa0357820:intron 45.0%
CGCTCGAGAAATGAATATGG+TGG + chr3_1:41675645-41675664 Msa0357820:intron 45.0%
TCAAACCTGCATGATGTAGG+GGG - chr3_1:41676231-41676250 None:intergenic 45.0%
AGGATCTTCCGATTCAGCAA+AGG + chr3_1:41676593-41676612 Msa0357820:intron 45.0%
GGATCTTCCGATTCAGCAAA+GGG + chr3_1:41676594-41676613 Msa0357820:intron 45.0%
CTCCAGCACAACCATAAACT+GGG - chr3_1:41676669-41676688 None:intergenic 45.0%
TCTTGGTTGAATTGTGGTGC+TGG - chr3_1:41676793-41676812 None:intergenic 45.0%
!! AGGTATTGAGCGAGTTCATC+TGG - chr3_1:41676835-41676854 None:intergenic 45.0%
!!! GTTTTTGGCGCTAGCAACGT+TGG + chr3_1:41673867-41673886 Msa0357820:CDS 50.0%
CAACGTTGGCAGAATGTTGC+AGG + chr3_1:41673881-41673900 Msa0357820:CDS 50.0%
GGGCGCTCGAGAAATGAATA+TGG + chr3_1:41675642-41675661 Msa0357820:intron 50.0%
CAAACCTGCATGATGTAGGG+GGG - chr3_1:41676230-41676249 None:intergenic 50.0%
CTTCCGATTCAGCAAAGGGA+AGG + chr3_1:41676598-41676617 Msa0357820:CDS 50.0%
GCACCTTCCCTTTGCTGAAT+CGG - chr3_1:41676604-41676623 None:intergenic 50.0%
GACCCAGTTTATGGTTGTGC+TGG + chr3_1:41676664-41676683 Msa0357820:CDS 50.0%
GCTCCAGCACAACCATAAAC+TGG - chr3_1:41676670-41676689 None:intergenic 50.0%
TTGCTCGAGCAACTGCAAGT+TGG - chr3_1:41676732-41676751 None:intergenic 50.0%
GGCGCGCGAGAATGACATAT+GGG - chr3_1:41674816-41674835 None:intergenic 55.0%
AGGCGCGCGAGAATGACATA+TGG - chr3_1:41674817-41674836 None:intergenic 55.0%
CTGGATGTAAGAGCAACCCG+TGG + chr3_1:41675966-41675985 Msa0357820:intron 55.0%
! GGGGGGTTTGATAGCTCAAC+TGG - chr3_1:41676213-41676232 None:intergenic 55.0%
CAAACCCCCCTACATCATGC+AGG + chr3_1:41676223-41676242 Msa0357820:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 41673717 41676876 41673717 ID=Msa0357820;Name=Msa0357820
chr3_1 mRNA 41673717 41676876 41673717 ID=Msa0357820-mRNA-1;Parent=Msa0357820;Name=Msa0357820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|155
chr3_1 exon 41673717 41673902 41673717 ID=Msa0357820-mRNA-1:exon:7237;Parent=Msa0357820-mRNA-1
chr3_1 exon 41676595 41676876 41676595 ID=Msa0357820-mRNA-1:exon:7238;Parent=Msa0357820-mRNA-1
chr3_1 CDS 41673717 41673902 41673717 ID=Msa0357820-mRNA-1:cds;Parent=Msa0357820-mRNA-1
chr3_1 CDS 41676595 41676876 41676595 ID=Msa0357820-mRNA-1:cds;Parent=Msa0357820-mRNA-1
Gene Sequence

>Msa0357820

CTGTTTACAATTTTCTTTTCGAAGAAAAAAATGAGTGGAAATTCACCATGTGCTTCATGCAAGATTCTGAGACGCAGATGCCCAAAAGATTGCATCTTTGCTCCTTATTTTCCTTCTCTTGAACCCCAAAAGTTTGTCGTAGTTCACAAGGTTTTTGGCGCTAGCAACGTTGGCAGAATGTTGCAGGATCTTCCGATTCAGCAAAGGGAAGGTGCAGTGAGCAGTTTAGTGTATGAAGCAAATGCAAGATTGAGTGACCCAGTTTATGGTTGTGCTGGAGCCATATATCACTTGCAAAATCAGGTTAGTGAGCTTCAAATCCAACTTGCAGTTGCTCGAGCAAAGATACACTACATCAAAATGCAAAATGAGCAAGTGATTCCAGCACCACAATTCAACCAAGATCACACATCTTACTTTATTCCAGATGAACTCGCTCAATACCTTAATTATGATATTTCTTGTTGA

Protein sequence

>Msa0357820

LFTIFFSKKKMSGNSPCASCKILRRRCPKDCIFAPYFPSLEPQKFVVVHKVFGASNVGRMLQDLPIQQREGAVSSLVYEANARLSDPVYGCAGAIYHLQNQVSELQIQLAVARAKIHYIKMQNEQVIPAPQFNQDHTSYFIPDELAQYLNYDISC*