Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357820 | XP_003616690.1 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 7.40e-75 | 231 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357820 | sp|Q8LBW3|LBD12_ARATH | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 4.52e-57 | 179 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357820 | G7K288 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 3.53e-75 | 231 |
Gene ID | Type | Classification |
---|---|---|
Msa0357820 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0357750 | Msa0357820 | 0.982460 | 3.769801e-155 | -8.615850e-47 |
Msa0357800 | Msa0357820 | 0.824931 | 6.177412e-54 | -8.615850e-47 |
Msa0357810 | Msa0357820 | 0.842066 | 3.245177e-58 | -8.615850e-47 |
Msa0357820 | Msa0357880 | 0.952865 | 9.616785e-111 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357820 | MtrunA17_Chr5g0437571 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 6.81e-79 | 231 |
Msa0357820 | MtrunA17_Chr3g0114061 | 64.828 | 145 | 43 | 3 | 11 | 151 | 1 | 141 | 1.11e-60 | 184 |
Msa0357820 | MtrunA17_Chr3g0106101 | 56.291 | 151 | 55 | 2 | 12 | 151 | 3 | 153 | 1.97e-55 | 172 |
Msa0357820 | MtrunA17_Chr2g0311601 | 62.500 | 128 | 40 | 1 | 9 | 136 | 6 | 125 | 6.26e-53 | 165 |
Msa0357820 | MtrunA17_Chr4g0043421 | 64.912 | 114 | 40 | 0 | 9 | 122 | 8 | 121 | 8.22e-51 | 160 |
Msa0357820 | MtrunA17_Chr4g0030001 | 58.772 | 114 | 46 | 1 | 15 | 127 | 23 | 136 | 3.01e-45 | 146 |
Msa0357820 | MtrunA17_Chr1g0200201 | 60.360 | 111 | 44 | 0 | 17 | 127 | 73 | 183 | 1.66e-43 | 143 |
Msa0357820 | MtrunA17_Chr3g0115431 | 61.538 | 104 | 40 | 0 | 13 | 116 | 6 | 109 | 1.72e-42 | 140 |
Msa0357820 | MtrunA17_Chr5g0438091 | 51.128 | 133 | 58 | 1 | 6 | 131 | 22 | 154 | 2.72e-42 | 139 |
Msa0357820 | MtrunA17_Chr7g0227511 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 9.56e-41 | 134 |
Msa0357820 | MtrunA17_Chr3g0117121 | 62.857 | 105 | 39 | 0 | 12 | 116 | 6 | 110 | 1.58e-40 | 134 |
Msa0357820 | MtrunA17_Chr4g0058651 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 2.58e-40 | 134 |
Msa0357820 | MtrunA17_Chr6g0449641 | 51.639 | 122 | 59 | 0 | 14 | 135 | 7 | 128 | 3.72e-40 | 132 |
Msa0357820 | MtrunA17_Chr6g0449651 | 59.223 | 103 | 42 | 0 | 14 | 116 | 65 | 167 | 1.58e-39 | 132 |
Msa0357820 | MtrunA17_Chr5g0402611 | 52.273 | 132 | 60 | 2 | 12 | 140 | 4 | 135 | 9.68e-39 | 133 |
Msa0357820 | MtrunA17_Chr3g0129071 | 57.407 | 108 | 46 | 0 | 15 | 122 | 46 | 153 | 3.41e-38 | 130 |
Msa0357820 | MtrunA17_Chr5g0437401 | 52.033 | 123 | 57 | 1 | 13 | 135 | 8 | 128 | 4.61e-38 | 127 |
Msa0357820 | MtrunA17_Chr3g0113891 | 59.406 | 101 | 41 | 0 | 13 | 113 | 11 | 111 | 8.73e-38 | 127 |
Msa0357820 | MtrunA17_Chr7g0225111 | 50.450 | 111 | 55 | 0 | 15 | 125 | 4 | 114 | 1.52e-37 | 124 |
Msa0357820 | MtrunA17_Chr3g0097221 | 54.286 | 105 | 48 | 0 | 12 | 116 | 3 | 107 | 3.60e-37 | 129 |
Msa0357820 | MtrunA17_Chr5g0444351 | 48.718 | 117 | 60 | 0 | 17 | 133 | 6 | 122 | 1.23e-36 | 123 |
Msa0357820 | MtrunA17_Chr8g0353981 | 54.237 | 118 | 52 | 1 | 12 | 129 | 3 | 118 | 1.21e-34 | 120 |
Msa0357820 | MtrunA17_Chr5g0432451 | 58.824 | 102 | 42 | 0 | 15 | 116 | 42 | 143 | 3.70e-34 | 119 |
Msa0357820 | MtrunA17_Chr1g0184281 | 52.381 | 105 | 49 | 1 | 12 | 115 | 11 | 115 | 7.37e-34 | 118 |
Msa0357820 | MtrunA17_Chr5g0435641 | 41.333 | 150 | 78 | 4 | 11 | 153 | 1 | 147 | 3.26e-33 | 115 |
Msa0357820 | MtrunA17_Chr7g0260971 | 51.429 | 105 | 50 | 1 | 15 | 118 | 13 | 117 | 1.23e-32 | 115 |
Msa0357820 | MtrunA17_Chr6g0460951 | 39.437 | 142 | 75 | 3 | 15 | 153 | 39 | 172 | 3.44e-31 | 111 |
Msa0357820 | MtrunA17_Chr7g0261031 | 51.402 | 107 | 50 | 2 | 11 | 115 | 2 | 108 | 6.03e-31 | 111 |
Msa0357820 | MtrunA17_Chr8g0351721 | 47.934 | 121 | 60 | 2 | 13 | 132 | 15 | 133 | 1.60e-30 | 109 |
Msa0357820 | MtrunA17_Chr8g0351701 | 53.125 | 96 | 44 | 1 | 16 | 110 | 23 | 118 | 1.93e-30 | 110 |
Msa0357820 | MtrunA17_Chr8g0374591 | 46.535 | 101 | 54 | 0 | 16 | 116 | 8 | 108 | 3.21e-30 | 106 |
Msa0357820 | MtrunA17_Chr1g0184271 | 40.714 | 140 | 80 | 2 | 16 | 154 | 12 | 149 | 3.65e-30 | 109 |
Msa0357820 | MtrunA17_Chr7g0245871 | 50.980 | 102 | 49 | 1 | 16 | 116 | 27 | 128 | 1.25e-29 | 108 |
Msa0357820 | MtrunA17_Chr8g0374601 | 45.536 | 112 | 59 | 1 | 16 | 127 | 26 | 135 | 1.79e-29 | 108 |
Msa0357820 | MtrunA17_Chr7g0245861 | 52.688 | 93 | 41 | 2 | 13 | 102 | 9 | 101 | 1.94e-27 | 99.8 |
Msa0357820 | MtrunA17_Chr6g0460941 | 46.591 | 88 | 46 | 1 | 16 | 102 | 7 | 94 | 3.82e-25 | 92.4 |
Msa0357820 | MtrunA17_Chr6g0452691 | 37.719 | 114 | 70 | 1 | 11 | 123 | 4 | 117 | 6.60e-25 | 94.4 |
Msa0357820 | MtrunA17_Chr8g0374581 | 42.478 | 113 | 62 | 2 | 16 | 127 | 8 | 118 | 2.93e-23 | 91.3 |
Msa0357820 | MtrunA17_Chr6g0452661 | 34.234 | 111 | 72 | 1 | 14 | 123 | 7 | 117 | 3.07e-21 | 86.7 |
Msa0357820 | MtrunA17_Chr6g0452671 | 31.496 | 127 | 87 | 0 | 17 | 143 | 12 | 138 | 4.04e-21 | 85.1 |
Msa0357820 | MtrunA17_Chr2g0330201 | 38.000 | 100 | 62 | 0 | 17 | 116 | 20 | 119 | 4.77e-21 | 86.7 |
Msa0357820 | MtrunA17_Chr4g0059901 | 41.935 | 93 | 54 | 0 | 17 | 109 | 11 | 103 | 6.95e-21 | 85.9 |
Msa0357820 | MtrunA17_Chr4g0040831 | 37.391 | 115 | 66 | 1 | 17 | 131 | 16 | 124 | 1.55e-20 | 83.6 |
Msa0357820 | MtrunA17_Chr8g0342351 | 35.000 | 100 | 65 | 0 | 17 | 116 | 13 | 112 | 1.13e-19 | 82.4 |
Msa0357820 | MtrunA17_Chr2g0326051 | 55.224 | 67 | 30 | 0 | 61 | 127 | 5 | 71 | 2.30e-19 | 78.6 |
Msa0357820 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 15 | 62 | 32 | 79 | 9.53e-19 | 75.9 |
Msa0357820 | MtrunA17_Chr4g0055441 | 32.456 | 114 | 76 | 1 | 17 | 129 | 3 | 116 | 9.91e-19 | 77.8 |
Msa0357820 | MtrunA17_Chr4g0046201 | 37.634 | 93 | 58 | 0 | 11 | 103 | 1 | 93 | 1.30e-18 | 79.7 |
Msa0357820 | MtrunA17_Chr5g0439111 | 40.964 | 83 | 48 | 1 | 14 | 95 | 7 | 89 | 2.07e-15 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357820 | AT2G30130.1 | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 4.60e-58 | 179 |
Msa0357820 | AT2G28500.1 | 50.714 | 140 | 68 | 1 | 15 | 154 | 54 | 192 | 5.09e-48 | 155 |
Msa0357820 | AT1G07900.1 | 63.889 | 108 | 37 | 1 | 15 | 122 | 32 | 137 | 1.06e-47 | 153 |
Msa0357820 | AT1G31320.1 | 59.350 | 123 | 50 | 0 | 7 | 129 | 4 | 126 | 5.39e-45 | 145 |
Msa0357820 | AT1G16530.1 | 60.748 | 107 | 41 | 1 | 15 | 120 | 13 | 119 | 3.27e-43 | 140 |
Msa0357820 | AT5G63090.4 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
Msa0357820 | AT5G63090.3 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
Msa0357820 | AT5G63090.2 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
Msa0357820 | AT5G63090.1 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.63e-40 | 134 |
Msa0357820 | AT3G27650.1 | 60.194 | 103 | 41 | 0 | 14 | 116 | 37 | 139 | 4.72e-40 | 132 |
Msa0357820 | AT3G26620.1 | 49.600 | 125 | 54 | 1 | 17 | 141 | 6 | 121 | 8.39e-40 | 130 |
Msa0357820 | AT3G26660.1 | 57.000 | 100 | 43 | 0 | 17 | 116 | 6 | 105 | 2.67e-39 | 129 |
Msa0357820 | AT2G30340.1 | 52.941 | 119 | 56 | 0 | 15 | 133 | 51 | 169 | 1.32e-38 | 132 |
Msa0357820 | AT2G30340.2 | 52.941 | 119 | 56 | 0 | 15 | 133 | 52 | 170 | 1.35e-38 | 132 |
Msa0357820 | AT2G23660.2 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
Msa0357820 | AT2G23660.3 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
Msa0357820 | AT2G23660.1 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 4.50e-38 | 132 |
Msa0357820 | AT3G11090.1 | 54.310 | 116 | 52 | 1 | 14 | 128 | 9 | 124 | 1.65e-37 | 126 |
Msa0357820 | AT5G66870.1 | 52.459 | 122 | 57 | 1 | 12 | 132 | 3 | 124 | 6.36e-37 | 129 |
Msa0357820 | AT1G65620.1 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
Msa0357820 | AT1G65620.4 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
Msa0357820 | AT1G65620.3 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
Msa0357820 | AT1G65620.5 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
Msa0357820 | AT1G65620.2 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 7.38e-36 | 123 |
Msa0357820 | AT2G40470.2 | 60.784 | 102 | 40 | 0 | 15 | 116 | 19 | 120 | 3.51e-35 | 121 |
Msa0357820 | AT2G40470.1 | 60.784 | 102 | 40 | 0 | 15 | 116 | 44 | 145 | 5.37e-35 | 122 |
Msa0357820 | AT4G00210.1 | 48.031 | 127 | 55 | 3 | 11 | 131 | 1 | 122 | 1.36e-33 | 118 |
Msa0357820 | AT3G03760.1 | 52.427 | 103 | 48 | 1 | 15 | 116 | 50 | 152 | 3.92e-33 | 118 |
Msa0357820 | AT2G42430.1 | 53.846 | 104 | 47 | 1 | 14 | 116 | 13 | 116 | 4.38e-33 | 117 |
Msa0357820 | AT3G50510.1 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.33e-31 | 112 |
Msa0357820 | AT3G50510.2 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.33e-31 | 112 |
Msa0357820 | AT2G45410.1 | 45.238 | 126 | 65 | 2 | 19 | 140 | 19 | 144 | 2.15e-31 | 111 |
Msa0357820 | AT2G42440.1 | 43.750 | 128 | 69 | 3 | 11 | 135 | 1 | 128 | 6.27e-31 | 112 |
Msa0357820 | AT2G31310.1 | 40.714 | 140 | 73 | 3 | 11 | 140 | 1 | 140 | 1.74e-29 | 106 |
Msa0357820 | AT3G58190.1 | 49.495 | 99 | 49 | 1 | 16 | 113 | 11 | 109 | 1.77e-29 | 107 |
Msa0357820 | AT5G06080.1 | 41.600 | 125 | 69 | 2 | 12 | 132 | 3 | 127 | 1.07e-27 | 101 |
Msa0357820 | AT2G45420.1 | 46.154 | 104 | 55 | 1 | 19 | 121 | 40 | 143 | 4.43e-27 | 102 |
Msa0357820 | AT4G00220.1 | 48.077 | 104 | 53 | 1 | 19 | 121 | 20 | 123 | 5.20e-27 | 101 |
Msa0357820 | AT5G35900.1 | 40.777 | 103 | 61 | 0 | 17 | 119 | 6 | 108 | 4.52e-24 | 93.2 |
Msa0357820 | AT3G13850.1 | 36.800 | 125 | 65 | 3 | 17 | 127 | 37 | 161 | 2.87e-23 | 92.4 |
Msa0357820 | AT1G72980.1 | 41.176 | 102 | 60 | 0 | 15 | 116 | 12 | 113 | 1.18e-22 | 89.7 |
Msa0357820 | AT3G47870.1 | 38.889 | 90 | 55 | 0 | 10 | 99 | 30 | 119 | 2.19e-18 | 80.5 |
Msa0357820 | AT1G06280.1 | 45.455 | 77 | 42 | 0 | 17 | 93 | 25 | 101 | 2.69e-18 | 78.2 |
Msa0357820 | AT2G19820.1 | 38.542 | 96 | 58 | 1 | 15 | 109 | 11 | 106 | 1.65e-17 | 73.9 |
Msa0357820 | AT4G22700.1 | 40.659 | 91 | 52 | 2 | 17 | 106 | 6 | 95 | 2.89e-15 | 70.1 |
Msa0357820 | AT5G15060.1 | 41.892 | 74 | 39 | 2 | 17 | 87 | 18 | 90 | 8.57e-13 | 62.4 |
Msa0357820 | AT1G36000.1 | 29.348 | 92 | 65 | 0 | 11 | 102 | 4 | 95 | 1.19e-12 | 61.6 |
Find 22 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGAACTACGACAAACTTT+TGG | 0.258263 | 3_1:-41673842 | None:intergenic |
AGATTGAGTGACCCAGTTTA+TGG | 0.284882 | 3_1:+41676655 | Msa0357820:CDS |
AACAAGAAATATCATAATTA+AGG | 0.293198 | 3_1:-41676852 | None:intergenic |
GGAGCAAAGATGCAATCTTT+TGG | 0.343297 | 3_1:-41673798 | None:intergenic |
GCTCCAGCACAACCATAAAC+TGG | 0.357617 | 3_1:-41676667 | None:intergenic |
CATATATCACTTGCAAAATC+AGG | 0.363361 | 3_1:+41676690 | Msa0357820:CDS |
GCACCTTCCCTTTGCTGAAT+CGG | 0.373246 | 3_1:-41676601 | None:intergenic |
AGGTATTGAGCGAGTTCATC+TGG | 0.379557 | 3_1:-41676832 | None:intergenic |
CAACGTTGGCAGAATGTTGC+AGG | 0.398392 | 3_1:+41673881 | Msa0357820:CDS |
GGTTCAAGAGAAGGAAAATA+AGG | 0.429065 | 3_1:-41673819 | None:intergenic |
TCTTGGTTGAATTGTGGTGC+TGG | 0.452174 | 3_1:-41676790 | None:intergenic |
GACCCAGTTTATGGTTGTGC+TGG | 0.452179 | 3_1:+41676664 | Msa0357820:CDS |
TAAAGTAAGATGTGTGATCT+TGG | 0.468213 | 3_1:-41676807 | None:intergenic |
GGATCTTCCGATTCAGCAAA+GGG | 0.503129 | 3_1:+41676594 | Msa0357820:intron |
TTGCTCGAGCAACTGCAAGT+TGG | 0.520454 | 3_1:-41676729 | None:intergenic |
CTCCAGCACAACCATAAACT+GGG | 0.573541 | 3_1:-41676666 | None:intergenic |
GTGTGATCTTGGTTGAATTG+TGG | 0.577677 | 3_1:-41676796 | None:intergenic |
AGGATCTTCCGATTCAGCAA+AGG | 0.581668 | 3_1:+41676593 | Msa0357820:intron |
AAAGTTTGTCGTAGTTCACA+AGG | 0.596548 | 3_1:+41673845 | Msa0357820:CDS |
AGAATCTTGCATGAAGCACA+TGG | 0.616501 | 3_1:-41673762 | None:intergenic |
CTTCCGATTCAGCAAAGGGA+AGG | 0.633097 | 3_1:+41676598 | Msa0357820:CDS |
GAAAAGAAAATTGTAAACAG+AGG | 0.681415 | 3_1:-41673714 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAATACTACTAAAAA+AGG | - | chr3_1:41674428-41674447 | None:intergenic | 10.0% |
!! | ATTATATAAACAACTAAAAA+GGG | - | chr3_1:41674462-41674481 | None:intergenic | 10.0% |
!! | TATTATATAAACAACTAAAA+AGG | - | chr3_1:41674463-41674482 | None:intergenic | 10.0% |
!!! | GAGTATTATTTTATAATTAT+CGG | + | chr3_1:41674631-41674650 | Msa0357820:intron | 10.0% |
!!! | TTTTAATTTTACTGATTTTA+TGG | - | chr3_1:41675143-41675162 | None:intergenic | 10.0% |
!! | TTAATAAAATTGAGAAATAT+AGG | - | chr3_1:41675245-41675264 | None:intergenic | 10.0% |
!!! | AAAAAAAAAAAAAAAGTGTT+TGG | - | chr3_1:41676038-41676057 | None:intergenic | 10.0% |
!! | TAAATAATTAACCATTAAAA+AGG | - | chr3_1:41676315-41676334 | None:intergenic | 10.0% |
!!! | ATAAGTGTTTATTATTTTTT+AGG | + | chr3_1:41676357-41676376 | Msa0357820:intron | 10.0% |
!!! | TAAGTGTTTATTATTTTTTA+GGG | + | chr3_1:41676358-41676377 | Msa0357820:intron | 10.0% |
!! | TTAATCATCTAAAAAGTAAA+TGG | - | chr3_1:41673930-41673949 | None:intergenic | 15.0% |
!!! | ATTTTTTGTAGACATATTTT+AGG | + | chr3_1:41674111-41674130 | Msa0357820:intron | 15.0% |
!!! | TCTTTTATGTTTTTTATATC+CGG | - | chr3_1:41674314-41674333 | None:intergenic | 15.0% |
!! | GTATTAAATACAAATTCATA+AGG | - | chr3_1:41674341-41674360 | None:intergenic | 15.0% |
!! | TAAAAAAGAAAGCTAAAAAA+AGG | - | chr3_1:41674397-41674416 | None:intergenic | 15.0% |
!!! | TTTTTGAAAGAGTATTTTTT+TGG | - | chr3_1:41675199-41675218 | None:intergenic | 15.0% |
!!! | GTTTGATGATTTTTTTAAAT+TGG | - | chr3_1:41675931-41675950 | None:intergenic | 15.0% |
!!! | ATGATTTAAAACCTTTTTAA+TGG | + | chr3_1:41676301-41676320 | Msa0357820:intron | 15.0% |
!!! | AAGTGTTTATTATTTTTTAG+GGG | + | chr3_1:41676359-41676378 | Msa0357820:intron | 15.0% |
!! | AACAAGAAATATCATAATTA+AGG | - | chr3_1:41676855-41676874 | None:intergenic | 15.0% |
!! | CAATATAAACAACTAATCTT+GGG | - | chr3_1:41673982-41674001 | None:intergenic | 20.0% |
!! | ACAATATAAACAACTAATCT+TGG | - | chr3_1:41673983-41674002 | None:intergenic | 20.0% |
!!! | TAGTTTGTGAATAAAATGTT+TGG | + | chr3_1:41674048-41674067 | Msa0357820:intron | 20.0% |
!!! | ATTTTCAGAAAAGTAACTAT+TGG | + | chr3_1:41674190-41674209 | Msa0357820:intron | 20.0% |
!! | GAATAGAAAAAACTTAGAAA+AGG | - | chr3_1:41674370-41674389 | None:intergenic | 20.0% |
!!! | TAAGCAAATTTTGACTTTTT+AGG | + | chr3_1:41674506-41674525 | Msa0357820:intron | 20.0% |
!!! | ATCGGATTTTAAAATATAGT+TGG | + | chr3_1:41674649-41674668 | Msa0357820:intron | 20.0% |
!!! | AGTCATCAATTTATATGTTT+TGG | - | chr3_1:41674784-41674803 | None:intergenic | 20.0% |
!! | ATTAAAATCTAAATTGCACA+GGG | - | chr3_1:41674860-41674879 | None:intergenic | 20.0% |
!! | TATTAAAATCTAAATTGCAC+AGG | - | chr3_1:41674861-41674880 | None:intergenic | 20.0% |
!!! | TTAGATTTTAATATCCGAAT+TGG | + | chr3_1:41674868-41674887 | Msa0357820:intron | 20.0% |
!!! | TTTTGAACATATTTGTAACA+TGG | - | chr3_1:41675380-41675399 | None:intergenic | 20.0% |
!! | TCGGATTATAAAATACAAAT+TGG | + | chr3_1:41675524-41675543 | Msa0357820:intron | 20.0% |
!!! | TTTAAAATCTAACAATCTCA+AGG | + | chr3_1:41675596-41675615 | Msa0357820:intron | 20.0% |
!! | TTAAAATCTAACAATCTCAA+GGG | + | chr3_1:41675597-41675616 | Msa0357820:intron | 20.0% |
!! | TAGTCTAAATTGATTGAATA+TGG | + | chr3_1:41675677-41675696 | Msa0357820:intron | 20.0% |
!!! | TTTTTAATTCATCCACAAAA+TGG | + | chr3_1:41675846-41675865 | Msa0357820:intron | 20.0% |
!!! | AAACTGATTTAAAAAGTGAT+TGG | - | chr3_1:41675906-41675925 | None:intergenic | 20.0% |
!!! | TATTTAGGAAATTGCTTTTT+AGG | - | chr3_1:41675995-41676014 | None:intergenic | 20.0% |
!! | AGCAATTTCCTAAATATTTA+CGG | + | chr3_1:41675999-41676018 | Msa0357820:intron | 20.0% |
!!! | TTTTTTGTTTTGCAATGAAA+AGG | + | chr3_1:41676259-41676278 | Msa0357820:intron | 20.0% |
!! | TTTTCGAAGAAAAAAATGAG+TGG | + | chr3_1:41673732-41673751 | Msa0357820:CDS | 25.0% |
!! | TTTTCTTTTGGTCTCAAAAA+AGG | - | chr3_1:41674074-41674093 | None:intergenic | 25.0% |
! | TATATAATAATTACTCCCTC+TGG | + | chr3_1:41674474-41674493 | Msa0357820:intron | 25.0% |
! | CATTCAATAAATGATGTATG+TGG | - | chr3_1:41674570-41674589 | None:intergenic | 25.0% |
!! | ATTTTGCTTATAAATGAGAC+CGG | + | chr3_1:41674605-41674624 | Msa0357820:intron | 25.0% |
! | TTATAAAATAATACTCCCTC+CGG | - | chr3_1:41674627-41674646 | None:intergenic | 25.0% |
! | TACAAGTAGAATTGTCATAT+AGG | + | chr3_1:41674725-41674744 | Msa0357820:intron | 25.0% |
! | ATACTAAGCAAATCATGATT+GGG | - | chr3_1:41674760-41674779 | None:intergenic | 25.0% |
! | TATACTAAGCAAATCATGAT+TGG | - | chr3_1:41674761-41674780 | None:intergenic | 25.0% |
! | TTAAAATCTAAATTGCACAG+GGG | - | chr3_1:41674859-41674878 | None:intergenic | 25.0% |
!! | AAATGAGTTTTTCACCAATT+CGG | - | chr3_1:41674885-41674904 | None:intergenic | 25.0% |
! | TATATAATCTGAACTCAGTT+AGG | + | chr3_1:41674978-41674997 | Msa0357820:intron | 25.0% |
! | AATAACTATTCATGAGAGTT+AGG | - | chr3_1:41675040-41675059 | None:intergenic | 25.0% |
!!! | CTCTCATGAATAGTTATTTT+AGG | + | chr3_1:41675042-41675061 | Msa0357820:intron | 25.0% |
!!! | TTTTACTGATTTTATGGTCA+AGG | - | chr3_1:41675137-41675156 | None:intergenic | 25.0% |
!!! | TAACATGGATAGTCATTTTA+AGG | - | chr3_1:41675365-41675384 | None:intergenic | 25.0% |
!! | ATTTTCGGAAGGAAAAAAAT+AGG | + | chr3_1:41675621-41675640 | Msa0357820:intron | 25.0% |
!! | TTTTCGGAAGGAAAAAAATA+GGG | + | chr3_1:41675622-41675641 | Msa0357820:intron | 25.0% |
! | CTAAATTGATTGAATATGGT+TGG | + | chr3_1:41675681-41675700 | Msa0357820:intron | 25.0% |
! | GACTCAACTCATAAAAATTT+GGG | + | chr3_1:41675755-41675774 | Msa0357820:intron | 25.0% |
!!! | TTGATTTTTGAGCAATTAGA+GGG | - | chr3_1:41675797-41675816 | None:intergenic | 25.0% |
!!! | TTTGATTTTTGAGCAATTAG+AGG | - | chr3_1:41675798-41675817 | None:intergenic | 25.0% |
! | TGGATGAATTAAAAAGTGAT+TGG | - | chr3_1:41675841-41675860 | None:intergenic | 25.0% |
! | GCAATTTCCTAAATATTTAC+GGG | + | chr3_1:41676000-41676019 | Msa0357820:intron | 25.0% |
! | TCATTAACCCGTAAATATTT+AGG | - | chr3_1:41676010-41676029 | None:intergenic | 25.0% |
! | GTAATGTATTAAAGGTTTAG+GGG | - | chr3_1:41676177-41676196 | None:intergenic | 25.0% |
! | GGTAATGTATTAAAGGTTTA+GGG | - | chr3_1:41676178-41676197 | None:intergenic | 25.0% |
!!! | TGTTGTACTTTTTTACTATG+CGG | - | chr3_1:41676452-41676471 | None:intergenic | 25.0% |
!! | AAAAAGTACAACAATGTTGT+TGG | + | chr3_1:41676459-41676478 | Msa0357820:intron | 25.0% |
! | GCAATTAGCTATGAAGTTTT+AGG | - | chr3_1:41674144-41674163 | None:intergenic | 30.0% |
! | TATTGGTTGTTACCACTTAA+TGG | + | chr3_1:41674207-41674226 | Msa0357820:intron | 30.0% |
ATTGGTTGTTACCACTTAAT+GGG | + | chr3_1:41674208-41674227 | Msa0357820:intron | 30.0% | |
!!! | TGTTTTTTATATCCGGAAGT+TGG | - | chr3_1:41674307-41674326 | None:intergenic | 30.0% |
TTCATAAACACCCTATTTCA+AGG | + | chr3_1:41674909-41674928 | Msa0357820:intron | 30.0% | |
TCATAAACACCCTATTTCAA+GGG | + | chr3_1:41674910-41674929 | Msa0357820:intron | 30.0% | |
! | CTGTTTTATCCCTTGAAATA+GGG | - | chr3_1:41674922-41674941 | None:intergenic | 30.0% |
! | ACTGTTTTATCCCTTGAAAT+AGG | - | chr3_1:41674923-41674942 | None:intergenic | 30.0% |
TATATAATCCGAACTCAGTT+AGG | + | chr3_1:41674949-41674968 | Msa0357820:intron | 30.0% | |
! | GATGGATCATTAACATTTTC+TGG | + | chr3_1:41675000-41675019 | Msa0357820:intron | 30.0% |
ATTATTCTTCCTAACTCTCA+TGG | - | chr3_1:41675337-41675356 | None:intergenic | 30.0% | |
TCCGAAAACCTCAAAAAATA+GGG | - | chr3_1:41675509-41675528 | None:intergenic | 30.0% | |
ATCCGAAAACCTCAAAAAAT+AGG | - | chr3_1:41675510-41675529 | None:intergenic | 30.0% | |
! | TGAGTTTTTCCTTTGTAATG+AGG | - | chr3_1:41675568-41675587 | None:intergenic | 30.0% |
TACAAAGGAAAAACTCAGTT+CGG | + | chr3_1:41675571-41675590 | Msa0357820:intron | 30.0% | |
CGACTCAACTCATAAAAATT+TGG | + | chr3_1:41675754-41675773 | Msa0357820:intron | 30.0% | |
AAATTTGGGTGTAGTTCATT+AGG | + | chr3_1:41675769-41675788 | Msa0357820:intron | 30.0% | |
! | GACACTTAATAACCATTTTG+TGG | - | chr3_1:41675861-41675880 | None:intergenic | 30.0% |
!! | TCGTTCGACAATTTTTAGAT+TGG | + | chr3_1:41675879-41675898 | Msa0357820:intron | 30.0% |
! | ATATTTACGGGTTAATGAGT+CGG | + | chr3_1:41676012-41676031 | Msa0357820:intron | 30.0% |
!! | TAGGGGTCAAATTTTGATAA+GGG | - | chr3_1:41676160-41676179 | None:intergenic | 30.0% |
!! | TTAGGGGTCAAATTTTGATA+AGG | - | chr3_1:41676161-41676180 | None:intergenic | 30.0% |
GGGTAATGTATTAAAGGTTT+AGG | - | chr3_1:41676179-41676198 | None:intergenic | 30.0% | |
! | TTTTACTATGCGGAAAAGTA+AGG | - | chr3_1:41676442-41676461 | None:intergenic | 30.0% |
AAGAACACAATGATTGATCA+AGG | - | chr3_1:41676510-41676529 | None:intergenic | 30.0% | |
! | TTTTTCTCATACAATGCATC+AGG | + | chr3_1:41676573-41676592 | Msa0357820:intron | 30.0% |
! | CTGATTTTGCAAGTGATATA+TGG | - | chr3_1:41676692-41676711 | None:intergenic | 30.0% |
CATATATCACTTGCAAAATC+AGG | + | chr3_1:41676690-41676709 | Msa0357820:CDS | 30.0% | |
TAAAGTAAGATGTGTGATCT+TGG | - | chr3_1:41676810-41676829 | None:intergenic | 30.0% | |
! | GAGCAAAGATGCAATCTTTT+GGG | - | chr3_1:41673800-41673819 | None:intergenic | 35.0% |
GGTTCAAGAGAAGGAAAATA+AGG | - | chr3_1:41673822-41673841 | None:intergenic | 35.0% | |
! | TGAACTACGACAAACTTTTG+GGG | - | chr3_1:41673843-41673862 | None:intergenic | 35.0% |
! | GTGAACTACGACAAACTTTT+GGG | - | chr3_1:41673844-41673863 | None:intergenic | 35.0% |
! | TGTGAACTACGACAAACTTT+TGG | - | chr3_1:41673845-41673864 | None:intergenic | 35.0% |
AAAGTTTGTCGTAGTTCACA+AGG | + | chr3_1:41673845-41673864 | Msa0357820:CDS | 35.0% | |
!!! | CATTCCTCGCTTTTTTCTTT+TGG | - | chr3_1:41674086-41674105 | None:intergenic | 35.0% |
TTGGTTGTTACCACTTAATG+GGG | + | chr3_1:41674209-41674228 | Msa0357820:intron | 35.0% | |
! | CCATCGGATCACAATTTTTA+TGG | - | chr3_1:41674253-41674272 | None:intergenic | 35.0% |
CCATAAAAATTGTGATCCGA+TGG | + | chr3_1:41674250-41674269 | Msa0357820:intron | 35.0% | |
GTTCTCAAATTGTTCACCAT+CGG | - | chr3_1:41674269-41674288 | None:intergenic | 35.0% | |
TGCTTATAATAGTGACCAGA+GGG | - | chr3_1:41674492-41674511 | None:intergenic | 35.0% | |
TTGCTTATAATAGTGACCAG+AGG | - | chr3_1:41674493-41674512 | None:intergenic | 35.0% | |
CATTGTAACTTTAACAGTCG+TGG | - | chr3_1:41674691-41674710 | None:intergenic | 35.0% | |
TAAGCAAATCATGATTGGGT+TGG | - | chr3_1:41674756-41674775 | None:intergenic | 35.0% | |
!! | GCATTTTTGGAAAAAGCACA+AGG | - | chr3_1:41674837-41674856 | None:intergenic | 35.0% |
TAATCCATCCTAACTGAGTT+CGG | - | chr3_1:41674960-41674979 | None:intergenic | 35.0% | |
TAATCTGAACTCAGTTAGGA+TGG | + | chr3_1:41674982-41675001 | Msa0357820:intron | 35.0% | |
!!! | ACCGGATTTTTGGTTAAGAA+CGG | - | chr3_1:41675078-41675097 | None:intergenic | 35.0% |
! | TAACCAAAAATCCGGTTTTC+AGG | + | chr3_1:41675082-41675101 | Msa0357820:intron | 35.0% |
!! | CTCTCATGGATAGTCATTTT+AGG | - | chr3_1:41675323-41675342 | None:intergenic | 35.0% |
AATGACTATCCATGAGAGTT+AGG | + | chr3_1:41675325-41675344 | Msa0357820:intron | 35.0% | |
! | TTTCTAGGGGAAAAACAGTT+AGG | - | chr3_1:41675433-41675452 | None:intergenic | 35.0% |
! | CCTAAACACTCTTTTTCTAG+GGG | - | chr3_1:41675446-41675465 | None:intergenic | 35.0% |
! | CCCTAAACACTCTTTTTCTA+GGG | - | chr3_1:41675447-41675466 | None:intergenic | 35.0% |
!! | CCCTAGAAAAAGAGTGTTTA+GGG | + | chr3_1:41675444-41675463 | Msa0357820:intron | 35.0% |
!! | CCTAGAAAAAGAGTGTTTAG+GGG | + | chr3_1:41675445-41675464 | Msa0357820:intron | 35.0% |
!!! | GCCCTATTTTTTGAGGTTTT+CGG | + | chr3_1:41675505-41675524 | Msa0357820:intron | 35.0% |
! | CATTTTCCACCTCATTACAA+AGG | + | chr3_1:41675556-41675575 | Msa0357820:intron | 35.0% |
! | GTTTTTCCTTTGTAATGAGG+TGG | - | chr3_1:41675565-41675584 | None:intergenic | 35.0% |
!!! | AACAATCTCAAGGGCATTTT+CGG | + | chr3_1:41675606-41675625 | Msa0357820:intron | 35.0% |
CTCAAAAATCAAACTACCGT+TGG | + | chr3_1:41675805-41675824 | Msa0357820:intron | 35.0% | |
!!! | AATTGCTTTTTAGGCAACCA+CGG | - | chr3_1:41675986-41676005 | None:intergenic | 35.0% |
TCTAGATATAGTCACGATTG+AGG | + | chr3_1:41676064-41676083 | Msa0357820:intron | 35.0% | |
GCTAAGGGGTAATGTATTAA+AGG | - | chr3_1:41676185-41676204 | None:intergenic | 35.0% | |
AATCAAACCTGCATGATGTA+GGG | - | chr3_1:41676233-41676252 | None:intergenic | 35.0% | |
AGAATCTTGCATGAAGCACA+TGG | - | chr3_1:41673765-41673784 | None:intergenic | 40.0% | |
! | GGAGCAAAGATGCAATCTTT+TGG | - | chr3_1:41673801-41673820 | None:intergenic | 40.0% |
!!! | AACTTTTGGGGTTCAAGAGA+AGG | - | chr3_1:41673831-41673850 | None:intergenic | 40.0% |
! | GTCGTAGTTCACAAGGTTTT+TGG | + | chr3_1:41673852-41673871 | Msa0357820:CDS | 40.0% |
! | GGAACACTAAAAAGAGTACG+AGG | - | chr3_1:41673909-41673928 | None:intergenic | 40.0% |
GAGACCAAAAGAAAAAAGCG+AGG | + | chr3_1:41674079-41674098 | Msa0357820:intron | 40.0% | |
TTGCTTATAAATGAGACCGG+AGG | + | chr3_1:41674608-41674627 | Msa0357820:intron | 40.0% | |
TGCTTATAAATGAGACCGGA+GGG | + | chr3_1:41674609-41674628 | Msa0357820:intron | 40.0% | |
!!! | AAATTGCACAGGGGCATTTT+TGG | - | chr3_1:41674850-41674869 | None:intergenic | 40.0% |
TAATCCGAACTCAGTTAGGA+TGG | + | chr3_1:41674953-41674972 | Msa0357820:intron | 40.0% | |
GCCGTTCTTAACCAAAAATC+CGG | + | chr3_1:41675074-41675093 | Msa0357820:intron | 40.0% | |
! | TAGCCTGAAAACCGGATTTT+TGG | - | chr3_1:41675088-41675107 | None:intergenic | 40.0% |
TGATCAAGTAGCCTGAAAAC+CGG | - | chr3_1:41675096-41675115 | None:intergenic | 40.0% | |
GATCAGATTGCTCCAAAACT+TGG | + | chr3_1:41675111-41675130 | Msa0357820:intron | 40.0% | |
! | TTATGGTCAAGGCCAAGTTT+TGG | - | chr3_1:41675126-41675145 | None:intergenic | 40.0% |
!! | CCCCTAGAAAAAGAGTGTTT+AGG | + | chr3_1:41675443-41675462 | Msa0357820:intron | 40.0% |
! | CCCCTAAACACTCTTTTTCT+AGG | - | chr3_1:41675448-41675467 | None:intergenic | 40.0% |
! | GGCGCGTTACTTGAATTTTT+CGG | - | chr3_1:41675488-41675507 | None:intergenic | 40.0% |
GGTTGGATCGATTGTTGTAA+TGG | + | chr3_1:41675698-41675717 | Msa0357820:intron | 40.0% | |
TTGAGTCGTGAAGTTCAACA+AGG | - | chr3_1:41675742-41675761 | None:intergenic | 40.0% | |
!! | CAAACTACCGTTGGTTTGAT+TGG | + | chr3_1:41675814-41675833 | Msa0357820:intron | 40.0% |
GATTGGACCAATCAAACCAA+CGG | - | chr3_1:41675824-41675843 | None:intergenic | 40.0% | |
AAACAGTAGTTAACTGTCGC+TGG | + | chr3_1:41675947-41675966 | Msa0357820:intron | 40.0% | |
!!! | ATTGCTTTTTAGGCAACCAC+GGG | - | chr3_1:41675985-41676004 | None:intergenic | 40.0% |
! | CTCAACTGGTTTAAGCTAAG+GGG | - | chr3_1:41676199-41676218 | None:intergenic | 40.0% |
! | GCTCAACTGGTTTAAGCTAA+GGG | - | chr3_1:41676200-41676219 | None:intergenic | 40.0% |
! | AGCTCAACTGGTTTAAGCTA+AGG | - | chr3_1:41676201-41676220 | None:intergenic | 40.0% |
ATCAAACCTGCATGATGTAG+GGG | - | chr3_1:41676232-41676251 | None:intergenic | 40.0% | |
GAATCAAACCTGCATGATGT+AGG | - | chr3_1:41676234-41676253 | None:intergenic | 40.0% | |
AGATTGAGTGACCCAGTTTA+TGG | + | chr3_1:41676655-41676674 | Msa0357820:CDS | 40.0% | |
GTGTGATCTTGGTTGAATTG+TGG | - | chr3_1:41676799-41676818 | None:intergenic | 40.0% | |
GTGAGTAGAACCCCATTAAG+TGG | - | chr3_1:41674222-41674241 | None:intergenic | 45.0% | |
ATTGAGCAATCGCCAACTTC+CGG | + | chr3_1:41674292-41674311 | Msa0357820:intron | 45.0% | |
!!! | GTAACGCGCCCTATTTTTTG+AGG | + | chr3_1:41675498-41675517 | Msa0357820:intron | 45.0% |
!!! | ATCTCAAGGGCATTTTCGGA+AGG | + | chr3_1:41675610-41675629 | Msa0357820:intron | 45.0% |
CGCTCGAGAAATGAATATGG+TGG | + | chr3_1:41675645-41675664 | Msa0357820:intron | 45.0% | |
TCAAACCTGCATGATGTAGG+GGG | - | chr3_1:41676231-41676250 | None:intergenic | 45.0% | |
AGGATCTTCCGATTCAGCAA+AGG | + | chr3_1:41676593-41676612 | Msa0357820:intron | 45.0% | |
GGATCTTCCGATTCAGCAAA+GGG | + | chr3_1:41676594-41676613 | Msa0357820:intron | 45.0% | |
CTCCAGCACAACCATAAACT+GGG | - | chr3_1:41676669-41676688 | None:intergenic | 45.0% | |
TCTTGGTTGAATTGTGGTGC+TGG | - | chr3_1:41676793-41676812 | None:intergenic | 45.0% | |
!! | AGGTATTGAGCGAGTTCATC+TGG | - | chr3_1:41676835-41676854 | None:intergenic | 45.0% |
!!! | GTTTTTGGCGCTAGCAACGT+TGG | + | chr3_1:41673867-41673886 | Msa0357820:CDS | 50.0% |
CAACGTTGGCAGAATGTTGC+AGG | + | chr3_1:41673881-41673900 | Msa0357820:CDS | 50.0% | |
GGGCGCTCGAGAAATGAATA+TGG | + | chr3_1:41675642-41675661 | Msa0357820:intron | 50.0% | |
CAAACCTGCATGATGTAGGG+GGG | - | chr3_1:41676230-41676249 | None:intergenic | 50.0% | |
CTTCCGATTCAGCAAAGGGA+AGG | + | chr3_1:41676598-41676617 | Msa0357820:CDS | 50.0% | |
GCACCTTCCCTTTGCTGAAT+CGG | - | chr3_1:41676604-41676623 | None:intergenic | 50.0% | |
GACCCAGTTTATGGTTGTGC+TGG | + | chr3_1:41676664-41676683 | Msa0357820:CDS | 50.0% | |
GCTCCAGCACAACCATAAAC+TGG | - | chr3_1:41676670-41676689 | None:intergenic | 50.0% | |
TTGCTCGAGCAACTGCAAGT+TGG | - | chr3_1:41676732-41676751 | None:intergenic | 50.0% | |
GGCGCGCGAGAATGACATAT+GGG | - | chr3_1:41674816-41674835 | None:intergenic | 55.0% | |
AGGCGCGCGAGAATGACATA+TGG | - | chr3_1:41674817-41674836 | None:intergenic | 55.0% | |
CTGGATGTAAGAGCAACCCG+TGG | + | chr3_1:41675966-41675985 | Msa0357820:intron | 55.0% | |
! | GGGGGGTTTGATAGCTCAAC+TGG | - | chr3_1:41676213-41676232 | None:intergenic | 55.0% |
CAAACCCCCCTACATCATGC+AGG | + | chr3_1:41676223-41676242 | Msa0357820:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 41673717 | 41676876 | 41673717 | ID=Msa0357820;Name=Msa0357820 |
chr3_1 | mRNA | 41673717 | 41676876 | 41673717 | ID=Msa0357820-mRNA-1;Parent=Msa0357820;Name=Msa0357820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|155 |
chr3_1 | exon | 41673717 | 41673902 | 41673717 | ID=Msa0357820-mRNA-1:exon:7237;Parent=Msa0357820-mRNA-1 |
chr3_1 | exon | 41676595 | 41676876 | 41676595 | ID=Msa0357820-mRNA-1:exon:7238;Parent=Msa0357820-mRNA-1 |
chr3_1 | CDS | 41673717 | 41673902 | 41673717 | ID=Msa0357820-mRNA-1:cds;Parent=Msa0357820-mRNA-1 |
chr3_1 | CDS | 41676595 | 41676876 | 41676595 | ID=Msa0357820-mRNA-1:cds;Parent=Msa0357820-mRNA-1 |
Gene Sequence |
Protein sequence |