AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357800 MtrunA17_Chr5g0437571 75.694 144 35 0 11 154 1 144 3.61e-79 231
Msa0357800 MtrunA17_Chr3g0114061 64.828 145 43 3 11 151 1 141 7.94e-61 185
Msa0357800 MtrunA17_Chr3g0106101 56.291 151 55 2 12 151 3 153 1.15e-55 172
Msa0357800 MtrunA17_Chr2g0311601 62.500 128 40 1 9 136 6 125 3.40e-53 166
Msa0357800 MtrunA17_Chr4g0043421 64.912 114 40 0 9 122 8 121 5.43e-51 160
Msa0357800 MtrunA17_Chr4g0030001 58.772 114 46 1 15 127 23 136 1.86e-45 147
Msa0357800 MtrunA17_Chr1g0200201 60.360 111 44 0 17 127 73 183 1.17e-43 144
Msa0357800 MtrunA17_Chr3g0115431 61.538 104 40 0 13 116 6 109 1.46e-42 140
Msa0357800 MtrunA17_Chr5g0438091 51.128 133 58 1 6 131 22 154 2.50e-42 139
Msa0357800 MtrunA17_Chr7g0227511 62.136 103 39 0 14 116 9 111 6.97e-41 135
Msa0357800 MtrunA17_Chr3g0117121 62.857 105 39 0 12 116 6 110 1.28e-40 135
Msa0357800 MtrunA17_Chr4g0058651 62.136 103 39 0 14 116 9 111 1.82e-40 134
Msa0357800 MtrunA17_Chr6g0449641 51.639 122 59 0 14 135 7 128 3.06e-40 132
Msa0357800 MtrunA17_Chr6g0449651 59.223 103 42 0 14 116 65 167 1.31e-39 132
Msa0357800 MtrunA17_Chr5g0402611 52.273 132 60 2 12 140 4 135 9.27e-39 133
Msa0357800 MtrunA17_Chr3g0129071 57.407 108 46 0 15 122 46 153 2.50e-38 130
Msa0357800 MtrunA17_Chr5g0437401 52.033 123 57 1 13 135 8 128 3.22e-38 128
Msa0357800 MtrunA17_Chr3g0113891 59.406 101 41 0 13 113 11 111 5.53e-38 127
Msa0357800 MtrunA17_Chr7g0225111 50.450 111 55 0 15 125 4 114 1.12e-37 125
Msa0357800 MtrunA17_Chr3g0097221 54.286 105 48 0 12 116 3 107 2.59e-37 129
Msa0357800 MtrunA17_Chr5g0444351 48.718 117 60 0 17 133 6 122 1.05e-36 123
Msa0357800 MtrunA17_Chr8g0353981 54.237 118 52 1 12 129 3 118 8.31e-35 121
Msa0357800 MtrunA17_Chr5g0432451 58.824 102 42 0 15 116 42 143 2.43e-34 120
Msa0357800 MtrunA17_Chr1g0184281 52.381 105 49 1 12 115 11 115 3.98e-34 119
Msa0357800 MtrunA17_Chr5g0435641 42.177 147 75 4 11 150 1 144 6.73e-33 115
Msa0357800 MtrunA17_Chr7g0260971 51.429 105 50 1 15 118 13 117 7.42e-33 115
Msa0357800 MtrunA17_Chr6g0460951 40.141 142 74 3 15 153 39 172 6.85e-32 113
Msa0357800 MtrunA17_Chr7g0261031 51.402 107 50 2 11 115 2 108 3.92e-31 111
Msa0357800 MtrunA17_Chr8g0351721 47.934 121 60 2 13 132 15 133 1.19e-30 110
Msa0357800 MtrunA17_Chr8g0351701 53.125 96 44 1 16 110 23 118 1.26e-30 110
Msa0357800 MtrunA17_Chr8g0374591 46.535 101 54 0 16 116 8 108 2.61e-30 106
Msa0357800 MtrunA17_Chr1g0184271 41.481 135 76 2 16 149 12 144 3.43e-30 109
Msa0357800 MtrunA17_Chr7g0245871 50.980 102 49 1 16 116 27 128 1.00e-29 108
Msa0357800 MtrunA17_Chr8g0374601 45.536 112 59 1 16 127 26 135 1.42e-29 108
Msa0357800 MtrunA17_Chr7g0245861 52.688 93 41 2 13 102 9 101 1.71e-27 99.8
Msa0357800 MtrunA17_Chr6g0460941 46.591 88 46 1 16 102 7 94 4.36e-25 92.4
Msa0357800 MtrunA17_Chr6g0452691 37.719 114 70 1 11 123 4 117 5.10e-25 94.7
Msa0357800 MtrunA17_Chr8g0374581 42.478 113 62 2 16 127 8 118 2.66e-23 91.3
Msa0357800 MtrunA17_Chr6g0452661 34.234 111 72 1 14 123 7 117 2.52e-21 86.7
Msa0357800 MtrunA17_Chr6g0452671 35.577 104 67 0 17 120 12 115 3.63e-21 85.1
Msa0357800 MtrunA17_Chr2g0330201 37.500 104 65 0 17 120 20 123 3.76e-21 87.0
Msa0357800 MtrunA17_Chr4g0059901 41.935 93 54 0 17 109 11 103 5.03e-21 86.3
Msa0357800 MtrunA17_Chr4g0040831 37.391 115 66 1 17 131 16 124 1.60e-20 83.6
Msa0357800 MtrunA17_Chr8g0342351 35.000 100 65 0 17 116 13 112 8.87e-20 82.8
Msa0357800 MtrunA17_Chr2g0326051 55.224 67 30 0 61 127 5 71 1.85e-19 79.0
Msa0357800 MtrunA17_Chr2g0326041 64.583 48 17 0 15 62 32 79 7.28e-19 76.3
Msa0357800 MtrunA17_Chr4g0055441 32.456 114 76 1 17 129 3 116 8.09e-19 78.2
Msa0357800 MtrunA17_Chr4g0046201 37.634 93 58 0 11 103 1 93 1.05e-18 80.1
Msa0357800 MtrunA17_Chr5g0439111 40.964 83 48 1 14 95 7 89 1.52e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357800 AT2G30130.1 63.910 133 44 1 13 141 5 137 2.52e-58 180
Msa0357800 AT2G28500.1 50.355 141 69 1 15 155 54 193 2.51e-48 156
Msa0357800 AT1G07900.1 63.889 108 37 1 15 122 32 137 6.50e-48 154
Msa0357800 AT1G31320.1 59.350 123 50 0 7 129 4 126 4.24e-45 145
Msa0357800 AT1G16530.1 60.748 107 41 1 15 120 13 119 2.57e-43 141
Msa0357800 AT5G63090.4 62.264 106 39 1 14 118 9 114 1.29e-40 135
Msa0357800 AT5G63090.3 62.264 106 39 1 14 118 9 114 1.29e-40 135
Msa0357800 AT5G63090.2 62.264 106 39 1 14 118 9 114 1.29e-40 135
Msa0357800 AT5G63090.1 62.264 106 39 1 14 118 9 114 1.29e-40 135
Msa0357800 AT3G27650.1 60.194 103 41 0 14 116 37 139 2.92e-40 133
Msa0357800 AT3G26620.1 49.600 125 54 1 17 141 6 121 4.81e-40 131
Msa0357800 AT3G26660.1 57.000 100 43 0 17 116 6 105 1.65e-39 130
Msa0357800 AT2G30340.1 52.941 119 56 0 15 133 51 169 9.15e-39 132
Msa0357800 AT2G30340.2 52.941 119 56 0 15 133 52 170 1.16e-38 132
Msa0357800 AT2G23660.2 51.695 118 54 2 14 130 3 118 2.61e-38 132
Msa0357800 AT2G23660.3 51.695 118 54 2 14 130 3 118 2.61e-38 132
Msa0357800 AT2G23660.1 51.695 118 54 2 14 130 3 118 2.61e-38 132
Msa0357800 AT3G11090.1 54.310 116 52 1 14 128 9 124 1.41e-37 126
Msa0357800 AT5G66870.1 52.459 122 57 1 12 132 3 124 4.98e-37 129
Msa0357800 AT1G65620.1 60.000 105 42 0 12 116 5 109 5.16e-36 123
Msa0357800 AT1G65620.4 60.000 105 42 0 12 116 5 109 5.16e-36 123
Msa0357800 AT1G65620.3 60.000 105 42 0 12 116 5 109 5.16e-36 123
Msa0357800 AT1G65620.5 60.000 105 42 0 12 116 5 109 5.16e-36 123
Msa0357800 AT1G65620.2 60.000 105 42 0 12 116 5 109 5.16e-36 123
Msa0357800 AT2G40470.2 60.784 102 40 0 15 116 19 120 2.92e-35 121
Msa0357800 AT2G40470.1 60.784 102 40 0 15 116 44 145 3.68e-35 122
Msa0357800 AT4G00210.1 48.031 127 55 3 11 131 1 122 1.03e-33 118
Msa0357800 AT2G42430.1 53.846 104 47 1 14 116 13 116 2.73e-33 118
Msa0357800 AT3G03760.1 52.427 103 48 1 15 116 50 152 2.87e-33 118
Msa0357800 AT3G50510.1 46.018 113 59 1 4 116 2 112 1.03e-31 112
Msa0357800 AT3G50510.2 46.018 113 59 1 4 116 2 112 1.03e-31 112
Msa0357800 AT2G45410.1 45.238 126 65 2 19 140 19 144 1.89e-31 111
Msa0357800 AT2G42440.1 43.750 128 69 3 11 135 1 128 4.85e-31 112
Msa0357800 AT3G58190.1 49.495 99 49 1 16 113 11 109 9.00e-30 108
Msa0357800 AT2G31310.1 40.714 140 73 3 11 140 1 140 1.16e-29 107
Msa0357800 AT5G06080.1 41.600 125 69 2 12 132 3 127 8.98e-28 102
Msa0357800 AT2G45420.1 46.154 104 55 1 19 121 40 143 3.26e-27 102
Msa0357800 AT4G00220.1 48.077 104 53 1 19 121 20 123 3.70e-27 101
Msa0357800 AT5G35900.1 40.777 103 61 0 17 119 6 108 3.50e-24 93.6
Msa0357800 AT3G13850.1 36.800 125 65 3 17 127 37 161 2.07e-23 92.8
Msa0357800 AT1G72980.1 42.056 107 60 1 12 116 7 113 1.04e-22 89.7
Msa0357800 AT3G47870.1 38.889 90 55 0 10 99 30 119 1.63e-18 80.9
Msa0357800 AT1G06280.1 45.455 77 42 0 17 93 25 101 2.04e-18 78.6
Msa0357800 AT2G19820.1 38.542 96 58 1 15 109 11 106 1.51e-17 74.3
Msa0357800 AT4G22700.1 40.659 91 52 2 17 106 6 95 2.23e-15 70.1
Msa0357800 AT5G15060.1 41.892 74 39 2 17 87 18 90 7.63e-13 62.4
Msa0357800 AT1G36000.1 29.348 92 65 0 11 102 4 95 1.23e-12 61.2

Find 22 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGAACTACGACAAACTTT+TGG 0.258263 3_1:+41547031 None:intergenic
AGATTGAGTGACCCAGTTTA+TGG 0.284882 3_1:-41544218 Msa0357800:CDS
AATAAGAAATATTATAATTA+AGG 0.286474 3_1:+41544021 None:intergenic
GGAGCAAAGATGCAATCTTT+TGG 0.343297 3_1:+41547075 None:intergenic
GCTCCAGCACAACCATAAAC+TGG 0.357617 3_1:+41544206 None:intergenic
CATATATCACTTGCAAAATC+AGG 0.363361 3_1:-41544183 Msa0357800:CDS
GCACCTTCCCTTTGCTGAAT+CGG 0.373246 3_1:+41544272 None:intergenic
AGGTATTGAGCGAGTTCATC+TGG 0.379557 3_1:+41544041 None:intergenic
CAACGTTGGCAGAATGTTGC+AGG 0.398392 3_1:-41546992 Msa0357800:intron
GGTTCAAGAGAAGGAAAATA+AGG 0.429065 3_1:+41547054 None:intergenic
TCTTGGTTGAATTGTGGTGC+TGG 0.452174 3_1:+41544083 None:intergenic
GACCCAGTTTATGGTTGTGC+TGG 0.452179 3_1:-41544209 Msa0357800:CDS
TAAAGTAAGATGTGTGATCT+TGG 0.468213 3_1:+41544066 None:intergenic
GGATCTTCCGATTCAGCAAA+GGG 0.503129 3_1:-41544279 Msa0357800:CDS
TTGCTCGAGCAACTGCAAGT+TGG 0.520454 3_1:+41544144 None:intergenic
CTCCAGCACAACCATAAACT+GGG 0.573541 3_1:+41544207 None:intergenic
GTGTGATCTTGGTTGAATTG+TGG 0.577677 3_1:+41544077 None:intergenic
AGGATCTTCCGATTCAGCAA+AGG 0.581668 3_1:-41544280 Msa0357800:CDS
AAAGTTTGTCGTAGTTCACA+AGG 0.596548 3_1:-41547028 Msa0357800:CDS
AGAATCTTGCATGAAGCACA+TGG 0.616501 3_1:+41547111 None:intergenic
CTTCCGATTCAGCAAAGGGA+AGG 0.633097 3_1:-41544275 Msa0357800:CDS
GAAAAGAAAATTGTAAACAG+AGG 0.681415 3_1:+41547159 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAATACTACTAAAAA+AGG + chr3_1:41544730-41544749 None:intergenic 10.0%
!! ATTATATAAACAACTAAAAA+GGG + chr3_1:41544764-41544783 None:intergenic 10.0%
!! TATTATATAAACAACTAAAA+AGG + chr3_1:41544765-41544784 None:intergenic 10.0%
!!! GAGTATTATTTTATAATTAT+CGG - chr3_1:41544933-41544952 Msa0357800:intron 10.0%
!!! TTTTAATTTTACTGATTTTA+TGG + chr3_1:41545445-41545464 None:intergenic 10.0%
!! TTAATAAAATTGAGAAATAT+AGG + chr3_1:41545547-41545566 None:intergenic 10.0%
!!! AAAAAAAAAAAAAAAGTGTT+TGG + chr3_1:41546340-41546359 None:intergenic 10.0%
!! TAAATAATTAACCATTAAAA+AGG + chr3_1:41546617-41546636 None:intergenic 10.0%
!!! ATAAGTGTTTATTATTTTTT+AGG - chr3_1:41546659-41546678 Msa0357800:intron 10.0%
!!! TAAGTGTTTATTATTTTTTA+GGG - chr3_1:41546660-41546679 Msa0357800:intron 10.0%
!! TTAATCATCTAAAAAGTAAA+TGG + chr3_1:41544232-41544251 None:intergenic 15.0%
!!! ATTTTTTGTAGACATATTTT+AGG - chr3_1:41544413-41544432 Msa0357800:intron 15.0%
!!! TCTTTTATGTTTTTTATATC+CGG + chr3_1:41544616-41544635 None:intergenic 15.0%
!! GTATTAAATACAAATTCATA+AGG + chr3_1:41544643-41544662 None:intergenic 15.0%
!! TAAAAAAGAAAGCTAAAAAA+AGG + chr3_1:41544699-41544718 None:intergenic 15.0%
!!! TTTTTGAAAGAGTATTTTTT+TGG + chr3_1:41545501-41545520 None:intergenic 15.0%
!!! GTTTGATGATTTTTTTAAAT+TGG + chr3_1:41546233-41546252 None:intergenic 15.0%
!!! ATGATTTAAAACCTTTTTAA+TGG - chr3_1:41546603-41546622 Msa0357800:intron 15.0%
!!! AAGTGTTTATTATTTTTTAG+GGG - chr3_1:41546661-41546680 Msa0357800:intron 15.0%
!! CAATATAAACAACTAATCTT+GGG + chr3_1:41544284-41544303 None:intergenic 20.0%
!! ACAATATAAACAACTAATCT+TGG + chr3_1:41544285-41544304 None:intergenic 20.0%
!!! TAGTTTGTGAATAAAATGTT+TGG - chr3_1:41544350-41544369 Msa0357800:intron 20.0%
!!! ATTTTCAGAAAAGTAACTAT+TGG - chr3_1:41544492-41544511 Msa0357800:intron 20.0%
!! GAATAGAAAAAACTTAGAAA+AGG + chr3_1:41544672-41544691 None:intergenic 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG - chr3_1:41544808-41544827 Msa0357800:intron 20.0%
!!! ATCGGATTTTAAAATATAGT+TGG - chr3_1:41544951-41544970 Msa0357800:intron 20.0%
!!! AGTCATCAATTTATATGTTT+TGG + chr3_1:41545086-41545105 None:intergenic 20.0%
!! ATTAAAATCTAAATTGCACA+GGG + chr3_1:41545162-41545181 None:intergenic 20.0%
!! TATTAAAATCTAAATTGCAC+AGG + chr3_1:41545163-41545182 None:intergenic 20.0%
!!! TTAGATTTTAATATCCGAAT+TGG - chr3_1:41545170-41545189 Msa0357800:intron 20.0%
!!! TTTTGAACATATTTGTAACA+TGG + chr3_1:41545682-41545701 None:intergenic 20.0%
!! TCGGATTATAAAATACAAAT+TGG - chr3_1:41545826-41545845 Msa0357800:intron 20.0%
!!! TTTAAAATCTAACAATCTCA+AGG - chr3_1:41545898-41545917 Msa0357800:intron 20.0%
!! TTAAAATCTAACAATCTCAA+GGG - chr3_1:41545899-41545918 Msa0357800:intron 20.0%
!! TAGTCTAAATTGATTGAATA+TGG - chr3_1:41545979-41545998 Msa0357800:intron 20.0%
!!! TTTTTAATTCATCCACAAAA+TGG - chr3_1:41546148-41546167 Msa0357800:intron 20.0%
!!! AAACTGATTTAAAAAGTGAT+TGG + chr3_1:41546208-41546227 None:intergenic 20.0%
!!! TATTTAGGAAATTGCTTTTT+AGG + chr3_1:41546297-41546316 None:intergenic 20.0%
!! AGCAATTTCCTAAATATTTA+CGG - chr3_1:41546301-41546320 Msa0357800:intron 20.0%
!!! TTTTTTGTTTTGCAATGAAA+AGG - chr3_1:41546561-41546580 Msa0357800:intron 20.0%
!! TTTTCGAAGAAAAAAATGAG+TGG - chr3_1:41544034-41544053 Msa0357800:CDS 25.0%
!! TTTTCTTTTGGTCTCAAAAA+AGG + chr3_1:41544376-41544395 None:intergenic 25.0%
! TATATAATAATTACTCCCTC+TGG - chr3_1:41544776-41544795 Msa0357800:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr3_1:41544872-41544891 None:intergenic 25.0%
!! ATTTTGCTTATAAATGAGAC+CGG - chr3_1:41544907-41544926 Msa0357800:intron 25.0%
! TTATAAAATAATACTCCCTC+CGG + chr3_1:41544929-41544948 None:intergenic 25.0%
! TACAAGTAGAATTGTCATAT+AGG - chr3_1:41545027-41545046 Msa0357800:intron 25.0%
! ATACTAAGCAAATCATGATT+GGG + chr3_1:41545062-41545081 None:intergenic 25.0%
! TATACTAAGCAAATCATGAT+TGG + chr3_1:41545063-41545082 None:intergenic 25.0%
! TTAAAATCTAAATTGCACAG+GGG + chr3_1:41545161-41545180 None:intergenic 25.0%
!! AAATGAGTTTTTCACCAATT+CGG + chr3_1:41545187-41545206 None:intergenic 25.0%
! TATATAATCTGAACTCAGTT+AGG - chr3_1:41545280-41545299 Msa0357800:intron 25.0%
! AATAACTATTCATGAGAGTT+AGG + chr3_1:41545342-41545361 None:intergenic 25.0%
!!! CTCTCATGAATAGTTATTTT+AGG - chr3_1:41545344-41545363 Msa0357800:intron 25.0%
!!! TTTTACTGATTTTATGGTCA+AGG + chr3_1:41545439-41545458 None:intergenic 25.0%
!!! TAACATGGATAGTCATTTTA+AGG + chr3_1:41545667-41545686 None:intergenic 25.0%
!! ATTTTCGGAAGGAAAAAAAT+AGG - chr3_1:41545923-41545942 Msa0357800:intron 25.0%
!! TTTTCGGAAGGAAAAAAATA+GGG - chr3_1:41545924-41545943 Msa0357800:intron 25.0%
! CTAAATTGATTGAATATGGT+TGG - chr3_1:41545983-41546002 Msa0357800:intron 25.0%
! GACTCAACTCATAAAAATTT+GGG - chr3_1:41546057-41546076 Msa0357800:intron 25.0%
!!! TTGATTTTTGAGCAATTAGA+GGG + chr3_1:41546099-41546118 None:intergenic 25.0%
!!! TTTGATTTTTGAGCAATTAG+AGG + chr3_1:41546100-41546119 None:intergenic 25.0%
! TGGATGAATTAAAAAGTGAT+TGG + chr3_1:41546143-41546162 None:intergenic 25.0%
! GCAATTTCCTAAATATTTAC+GGG - chr3_1:41546302-41546321 Msa0357800:intron 25.0%
! TCATTAACCCGTAAATATTT+AGG + chr3_1:41546312-41546331 None:intergenic 25.0%
! GTAATGTATTAAAGGTTTAG+GGG + chr3_1:41546479-41546498 None:intergenic 25.0%
! GGTAATGTATTAAAGGTTTA+GGG + chr3_1:41546480-41546499 None:intergenic 25.0%
!!! TGTTGTACTTTTTTACTATG+CGG + chr3_1:41546754-41546773 None:intergenic 25.0%
!! AAAAAGTACAACAATGTTGT+TGG - chr3_1:41546761-41546780 Msa0357800:intron 25.0%
! GCAATTAGCTATGAAGTTTT+AGG + chr3_1:41544446-41544465 None:intergenic 30.0%
! TATTGGTTGTTACCACTTAA+TGG - chr3_1:41544509-41544528 Msa0357800:intron 30.0%
ATTGGTTGTTACCACTTAAT+GGG - chr3_1:41544510-41544529 Msa0357800:intron 30.0%
!!! TGTTTTTTATATCCGGAAGT+TGG + chr3_1:41544609-41544628 None:intergenic 30.0%
TTCATAAACACCCTATTTCA+AGG - chr3_1:41545211-41545230 Msa0357800:intron 30.0%
TCATAAACACCCTATTTCAA+GGG - chr3_1:41545212-41545231 Msa0357800:intron 30.0%
! CTGTTTTATCCCTTGAAATA+GGG + chr3_1:41545224-41545243 None:intergenic 30.0%
! ACTGTTTTATCCCTTGAAAT+AGG + chr3_1:41545225-41545244 None:intergenic 30.0%
TATATAATCCGAACTCAGTT+AGG - chr3_1:41545251-41545270 Msa0357800:intron 30.0%
! GATGGATCATTAACATTTTC+TGG - chr3_1:41545302-41545321 Msa0357800:intron 30.0%
ATTATTCTTCCTAACTCTCA+TGG + chr3_1:41545639-41545658 None:intergenic 30.0%
TCCGAAAACCTCAAAAAATA+GGG + chr3_1:41545811-41545830 None:intergenic 30.0%
ATCCGAAAACCTCAAAAAAT+AGG + chr3_1:41545812-41545831 None:intergenic 30.0%
! TGAGTTTTTCCTTTGTAATG+AGG + chr3_1:41545870-41545889 None:intergenic 30.0%
TACAAAGGAAAAACTCAGTT+CGG - chr3_1:41545873-41545892 Msa0357800:intron 30.0%
CGACTCAACTCATAAAAATT+TGG - chr3_1:41546056-41546075 Msa0357800:intron 30.0%
AAATTTGGGTGTAGTTCATT+AGG - chr3_1:41546071-41546090 Msa0357800:intron 30.0%
! GACACTTAATAACCATTTTG+TGG + chr3_1:41546163-41546182 None:intergenic 30.0%
!! TCGTTCGACAATTTTTAGAT+TGG - chr3_1:41546181-41546200 Msa0357800:intron 30.0%
! ATATTTACGGGTTAATGAGT+CGG - chr3_1:41546314-41546333 Msa0357800:intron 30.0%
!! TAGGGGTCAAATTTTGATAA+GGG + chr3_1:41546462-41546481 None:intergenic 30.0%
!! TTAGGGGTCAAATTTTGATA+AGG + chr3_1:41546463-41546482 None:intergenic 30.0%
GGGTAATGTATTAAAGGTTT+AGG + chr3_1:41546481-41546500 None:intergenic 30.0%
! TTTTACTATGCGGAAAAGTA+AGG + chr3_1:41546744-41546763 None:intergenic 30.0%
AAGAACACAATGATTGATCA+AGG + chr3_1:41546812-41546831 None:intergenic 30.0%
! TTTTTCTCATACAATGCATC+AGG - chr3_1:41546875-41546894 Msa0357800:intron 30.0%
! CTGATTTTGCAAGTGATATA+TGG + chr3_1:41546994-41547013 None:intergenic 30.0%
CATATATCACTTGCAAAATC+AGG - chr3_1:41546992-41547011 Msa0357800:intron 30.0%
TAAAGTAAGATGTGTGATCT+TGG + chr3_1:41547112-41547131 None:intergenic 30.0%
! GAGCAAAGATGCAATCTTTT+GGG + chr3_1:41544102-41544121 None:intergenic 35.0%
GGTTCAAGAGAAGGAAAATA+AGG + chr3_1:41544124-41544143 None:intergenic 35.0%
! TGAACTACGACAAACTTTTG+GGG + chr3_1:41544145-41544164 None:intergenic 35.0%
! GTGAACTACGACAAACTTTT+GGG + chr3_1:41544146-41544165 None:intergenic 35.0%
! TGTGAACTACGACAAACTTT+TGG + chr3_1:41544147-41544166 None:intergenic 35.0%
AAAGTTTGTCGTAGTTCACA+AGG - chr3_1:41544147-41544166 Msa0357800:CDS 35.0%
!!! CATTCCTCGCTTTTTTCTTT+TGG + chr3_1:41544388-41544407 None:intergenic 35.0%
TTGGTTGTTACCACTTAATG+GGG - chr3_1:41544511-41544530 Msa0357800:intron 35.0%
! CCATCGGATCACAATTTTTA+TGG + chr3_1:41544555-41544574 None:intergenic 35.0%
CCATAAAAATTGTGATCCGA+TGG - chr3_1:41544552-41544571 Msa0357800:intron 35.0%
GTTCTCAAATTGTTCACCAT+CGG + chr3_1:41544571-41544590 None:intergenic 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr3_1:41544794-41544813 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr3_1:41544795-41544814 None:intergenic 35.0%
CATTGTAACTTTAACAGTCG+TGG + chr3_1:41544993-41545012 None:intergenic 35.0%
TAAGCAAATCATGATTGGGT+TGG + chr3_1:41545058-41545077 None:intergenic 35.0%
!! GCATTTTTGGAAAAAGCACA+AGG + chr3_1:41545139-41545158 None:intergenic 35.0%
TAATCCATCCTAACTGAGTT+CGG + chr3_1:41545262-41545281 None:intergenic 35.0%
TAATCTGAACTCAGTTAGGA+TGG - chr3_1:41545284-41545303 Msa0357800:intron 35.0%
!!! ACCGGATTTTTGGTTAAGAA+CGG + chr3_1:41545380-41545399 None:intergenic 35.0%
! TAACCAAAAATCCGGTTTTC+AGG - chr3_1:41545384-41545403 Msa0357800:intron 35.0%
!! CTCTCATGGATAGTCATTTT+AGG + chr3_1:41545625-41545644 None:intergenic 35.0%
AATGACTATCCATGAGAGTT+AGG - chr3_1:41545627-41545646 Msa0357800:intron 35.0%
! TTTCTAGGGGAAAAACAGTT+AGG + chr3_1:41545735-41545754 None:intergenic 35.0%
! CCTAAACACTCTTTTTCTAG+GGG + chr3_1:41545748-41545767 None:intergenic 35.0%
! CCCTAAACACTCTTTTTCTA+GGG + chr3_1:41545749-41545768 None:intergenic 35.0%
!! CCCTAGAAAAAGAGTGTTTA+GGG - chr3_1:41545746-41545765 Msa0357800:intron 35.0%
!! CCTAGAAAAAGAGTGTTTAG+GGG - chr3_1:41545747-41545766 Msa0357800:intron 35.0%
!!! GCCCTATTTTTTGAGGTTTT+CGG - chr3_1:41545807-41545826 Msa0357800:intron 35.0%
! CATTTTCCACCTCATTACAA+AGG - chr3_1:41545858-41545877 Msa0357800:intron 35.0%
! GTTTTTCCTTTGTAATGAGG+TGG + chr3_1:41545867-41545886 None:intergenic 35.0%
!!! AACAATCTCAAGGGCATTTT+CGG - chr3_1:41545908-41545927 Msa0357800:intron 35.0%
CTCAAAAATCAAACTACCGT+TGG - chr3_1:41546107-41546126 Msa0357800:intron 35.0%
!!! AATTGCTTTTTAGGCAACCA+CGG + chr3_1:41546288-41546307 None:intergenic 35.0%
TCTAGATATAGTCACGATTG+AGG - chr3_1:41546366-41546385 Msa0357800:intron 35.0%
GCTAAGGGGTAATGTATTAA+AGG + chr3_1:41546487-41546506 None:intergenic 35.0%
AATCAAACCTGCATGATGTA+GGG + chr3_1:41546535-41546554 None:intergenic 35.0%
AGAATCTTGCATGAAGCACA+TGG + chr3_1:41544067-41544086 None:intergenic 40.0%
! GGAGCAAAGATGCAATCTTT+TGG + chr3_1:41544103-41544122 None:intergenic 40.0%
!!! AACTTTTGGGGTTCAAGAGA+AGG + chr3_1:41544133-41544152 None:intergenic 40.0%
! GTCGTAGTTCACAAGGTTTT+TGG - chr3_1:41544154-41544173 Msa0357800:CDS 40.0%
! GGAACACTAAAAAGAGTACG+AGG + chr3_1:41544211-41544230 None:intergenic 40.0%
GAGACCAAAAGAAAAAAGCG+AGG - chr3_1:41544381-41544400 Msa0357800:intron 40.0%
TTGCTTATAAATGAGACCGG+AGG - chr3_1:41544910-41544929 Msa0357800:intron 40.0%
TGCTTATAAATGAGACCGGA+GGG - chr3_1:41544911-41544930 Msa0357800:intron 40.0%
!!! AAATTGCACAGGGGCATTTT+TGG + chr3_1:41545152-41545171 None:intergenic 40.0%
TAATCCGAACTCAGTTAGGA+TGG - chr3_1:41545255-41545274 Msa0357800:intron 40.0%
GCCGTTCTTAACCAAAAATC+CGG - chr3_1:41545376-41545395 Msa0357800:intron 40.0%
! TAGCCTGAAAACCGGATTTT+TGG + chr3_1:41545390-41545409 None:intergenic 40.0%
TGATCAAGTAGCCTGAAAAC+CGG + chr3_1:41545398-41545417 None:intergenic 40.0%
GATCAGATTGCTCCAAAACT+TGG - chr3_1:41545413-41545432 Msa0357800:intron 40.0%
! TTATGGTCAAGGCCAAGTTT+TGG + chr3_1:41545428-41545447 None:intergenic 40.0%
!! CCCCTAGAAAAAGAGTGTTT+AGG - chr3_1:41545745-41545764 Msa0357800:intron 40.0%
! CCCCTAAACACTCTTTTTCT+AGG + chr3_1:41545750-41545769 None:intergenic 40.0%
! GGCGCGTTACTTGAATTTTT+CGG + chr3_1:41545790-41545809 None:intergenic 40.0%
GGTTGGATCGATTGTTGTAA+TGG - chr3_1:41546000-41546019 Msa0357800:intron 40.0%
TTGAGTCGTGAAGTTCAACA+AGG + chr3_1:41546044-41546063 None:intergenic 40.0%
!! CAAACTACCGTTGGTTTGAT+TGG - chr3_1:41546116-41546135 Msa0357800:intron 40.0%
GATTGGACCAATCAAACCAA+CGG + chr3_1:41546126-41546145 None:intergenic 40.0%
AAACAGTAGTTAACTGTCGC+TGG - chr3_1:41546249-41546268 Msa0357800:intron 40.0%
!!! ATTGCTTTTTAGGCAACCAC+GGG + chr3_1:41546287-41546306 None:intergenic 40.0%
! CTCAACTGGTTTAAGCTAAG+GGG + chr3_1:41546501-41546520 None:intergenic 40.0%
! GCTCAACTGGTTTAAGCTAA+GGG + chr3_1:41546502-41546521 None:intergenic 40.0%
! AGCTCAACTGGTTTAAGCTA+AGG + chr3_1:41546503-41546522 None:intergenic 40.0%
ATCAAACCTGCATGATGTAG+GGG + chr3_1:41546534-41546553 None:intergenic 40.0%
GAATCAAACCTGCATGATGT+AGG + chr3_1:41546536-41546555 None:intergenic 40.0%
AGATTGAGTGACCCAGTTTA+TGG - chr3_1:41546957-41546976 Msa0357800:intron 40.0%
GTGTGATCTTGGTTGAATTG+TGG + chr3_1:41547101-41547120 None:intergenic 40.0%
GTGAGTAGAACCCCATTAAG+TGG + chr3_1:41544524-41544543 None:intergenic 45.0%
ATTGAGCAATCGCCAACTTC+CGG - chr3_1:41544594-41544613 Msa0357800:intron 45.0%
!!! GTAACGCGCCCTATTTTTTG+AGG - chr3_1:41545800-41545819 Msa0357800:intron 45.0%
!!! ATCTCAAGGGCATTTTCGGA+AGG - chr3_1:41545912-41545931 Msa0357800:intron 45.0%
CGCTCGAGAAATGAATATGG+TGG - chr3_1:41545947-41545966 Msa0357800:intron 45.0%
TCAAACCTGCATGATGTAGG+GGG + chr3_1:41546533-41546552 None:intergenic 45.0%
AGGATCTTCCGATTCAGCAA+AGG - chr3_1:41546895-41546914 Msa0357800:intron 45.0%
GGATCTTCCGATTCAGCAAA+GGG - chr3_1:41546896-41546915 Msa0357800:intron 45.0%
CTCCAGCACAACCATAAACT+GGG + chr3_1:41546971-41546990 None:intergenic 45.0%
TCTTGGTTGAATTGTGGTGC+TGG + chr3_1:41547095-41547114 None:intergenic 45.0%
!! AGGTATTGAGCGAGTTCATC+TGG + chr3_1:41547137-41547156 None:intergenic 45.0%
!! AATAAGAAATATTATAATTA+AGG + chr3_1:41547157-41547176 None:intergenic 5.0%
!!! GTTTTTGGCGCTAGCAACGT+TGG - chr3_1:41544169-41544188 Msa0357800:CDS 50.0%
CAACGTTGGCAGAATGTTGC+AGG - chr3_1:41544183-41544202 Msa0357800:CDS 50.0%
GGGCGCTCGAGAAATGAATA+TGG - chr3_1:41545944-41545963 Msa0357800:intron 50.0%
CAAACCTGCATGATGTAGGG+GGG + chr3_1:41546532-41546551 None:intergenic 50.0%
CTTCCGATTCAGCAAAGGGA+AGG - chr3_1:41546900-41546919 Msa0357800:intron 50.0%
GCACCTTCCCTTTGCTGAAT+CGG + chr3_1:41546906-41546925 None:intergenic 50.0%
GACCCAGTTTATGGTTGTGC+TGG - chr3_1:41546966-41546985 Msa0357800:intron 50.0%
GCTCCAGCACAACCATAAAC+TGG + chr3_1:41546972-41546991 None:intergenic 50.0%
TTGCTCGAGCAACTGCAAGT+TGG + chr3_1:41547034-41547053 None:intergenic 50.0%
GGCGCGCGAGAATGACATAT+GGG + chr3_1:41545118-41545137 None:intergenic 55.0%
AGGCGCGCGAGAATGACATA+TGG + chr3_1:41545119-41545138 None:intergenic 55.0%
CTGGATGTAAGAGCAACCCG+TGG - chr3_1:41546268-41546287 Msa0357800:intron 55.0%
! GGGGGGTTTGATAGCTCAAC+TGG + chr3_1:41546515-41546534 None:intergenic 55.0%
CAAACCCCCCTACATCATGC+AGG - chr3_1:41546525-41546544 Msa0357800:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 41544019 41547178 41544019 ID=Msa0357800;Name=Msa0357800
chr3_1 mRNA 41544019 41547178 41544019 ID=Msa0357800-mRNA-1;Parent=Msa0357800;Name=Msa0357800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|155
chr3_1 exon 41546993 41547178 41546993 ID=Msa0357800-mRNA-1:exon:7233;Parent=Msa0357800-mRNA-1
chr3_1 exon 41544019 41544300 41544019 ID=Msa0357800-mRNA-1:exon:7232;Parent=Msa0357800-mRNA-1
chr3_1 CDS 41546993 41547178 41546993 ID=Msa0357800-mRNA-1:cds;Parent=Msa0357800-mRNA-1
chr3_1 CDS 41544019 41544300 41544019 ID=Msa0357800-mRNA-1:cds;Parent=Msa0357800-mRNA-1
Gene Sequence

>Msa0357800

CTGTTTACAATTTTCTTTTCGAAGAAAAAAATGAGTGGAAATTCACCATGTGCTTCATGCAAGATTCTGAGACGCAGATGCCCAAAAGATTGCATCTTTGCTCCTTATTTTCCTTCTCTTGAACCCCAAAAGTTTGTCGTAGTTCACAAGGTTTTTGGCGCTAGCAACGTTGGCAGAATGTTGCAGGATCTTCCGATTCAGCAAAGGGAAGGTGCAGTGAGCAGTTTAGTGTATGAAGCAAATGCAAGATTGAGTGACCCAGTTTATGGTTGTGCTGGAGCCATATATCACTTGCAAAATCAGGTTAGTGAGCTTCAAATCCAACTTGCAGTTGCTCGAGCAAAGATACACTACATCAAAATGCAAAATGAGCAAGTGATTCCAGCACCACAATTCAACCAAGATCACACATCTTACTTTATTCCAGATGAACTCGCTCAATACCTTAATTATAATATTTCTTATTGA

Protein sequence

>Msa0357800

LFTIFFSKKKMSGNSPCASCKILRRRCPKDCIFAPYFPSLEPQKFVVVHKVFGASNVGRMLQDLPIQQREGAVSSLVYEANARLSDPVYGCAGAIYHLQNQVSELQIQLAVARAKIHYIKMQNEQVIPAPQFNQDHTSYFIPDELAQYLNYNISY*