Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357800 | XP_003616690.1 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 3.92e-75 | 231 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357800 | sp|Q8LBW3|LBD12_ARATH | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 2.48e-57 | 180 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357800 | G7K288 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 1.87e-75 | 231 |
Gene ID | Type | Classification |
---|---|---|
Msa0357800 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0357750 | Msa0357800 | 0.813251 | 2.813367e-51 | -8.615850e-47 |
Msa0357800 | Msa0357810 | 0.873012 | 2.043843e-67 | -8.615850e-47 |
Msa0357800 | Msa0357820 | 0.824931 | 6.177412e-54 | -8.615850e-47 |
Msa0357800 | Msa0357880 | 0.865993 | 3.944282e-65 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357800 | MtrunA17_Chr5g0437571 | 75.694 | 144 | 35 | 0 | 11 | 154 | 1 | 144 | 3.61e-79 | 231 |
Msa0357800 | MtrunA17_Chr3g0114061 | 64.828 | 145 | 43 | 3 | 11 | 151 | 1 | 141 | 7.94e-61 | 185 |
Msa0357800 | MtrunA17_Chr3g0106101 | 56.291 | 151 | 55 | 2 | 12 | 151 | 3 | 153 | 1.15e-55 | 172 |
Msa0357800 | MtrunA17_Chr2g0311601 | 62.500 | 128 | 40 | 1 | 9 | 136 | 6 | 125 | 3.40e-53 | 166 |
Msa0357800 | MtrunA17_Chr4g0043421 | 64.912 | 114 | 40 | 0 | 9 | 122 | 8 | 121 | 5.43e-51 | 160 |
Msa0357800 | MtrunA17_Chr4g0030001 | 58.772 | 114 | 46 | 1 | 15 | 127 | 23 | 136 | 1.86e-45 | 147 |
Msa0357800 | MtrunA17_Chr1g0200201 | 60.360 | 111 | 44 | 0 | 17 | 127 | 73 | 183 | 1.17e-43 | 144 |
Msa0357800 | MtrunA17_Chr3g0115431 | 61.538 | 104 | 40 | 0 | 13 | 116 | 6 | 109 | 1.46e-42 | 140 |
Msa0357800 | MtrunA17_Chr5g0438091 | 51.128 | 133 | 58 | 1 | 6 | 131 | 22 | 154 | 2.50e-42 | 139 |
Msa0357800 | MtrunA17_Chr7g0227511 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 6.97e-41 | 135 |
Msa0357800 | MtrunA17_Chr3g0117121 | 62.857 | 105 | 39 | 0 | 12 | 116 | 6 | 110 | 1.28e-40 | 135 |
Msa0357800 | MtrunA17_Chr4g0058651 | 62.136 | 103 | 39 | 0 | 14 | 116 | 9 | 111 | 1.82e-40 | 134 |
Msa0357800 | MtrunA17_Chr6g0449641 | 51.639 | 122 | 59 | 0 | 14 | 135 | 7 | 128 | 3.06e-40 | 132 |
Msa0357800 | MtrunA17_Chr6g0449651 | 59.223 | 103 | 42 | 0 | 14 | 116 | 65 | 167 | 1.31e-39 | 132 |
Msa0357800 | MtrunA17_Chr5g0402611 | 52.273 | 132 | 60 | 2 | 12 | 140 | 4 | 135 | 9.27e-39 | 133 |
Msa0357800 | MtrunA17_Chr3g0129071 | 57.407 | 108 | 46 | 0 | 15 | 122 | 46 | 153 | 2.50e-38 | 130 |
Msa0357800 | MtrunA17_Chr5g0437401 | 52.033 | 123 | 57 | 1 | 13 | 135 | 8 | 128 | 3.22e-38 | 128 |
Msa0357800 | MtrunA17_Chr3g0113891 | 59.406 | 101 | 41 | 0 | 13 | 113 | 11 | 111 | 5.53e-38 | 127 |
Msa0357800 | MtrunA17_Chr7g0225111 | 50.450 | 111 | 55 | 0 | 15 | 125 | 4 | 114 | 1.12e-37 | 125 |
Msa0357800 | MtrunA17_Chr3g0097221 | 54.286 | 105 | 48 | 0 | 12 | 116 | 3 | 107 | 2.59e-37 | 129 |
Msa0357800 | MtrunA17_Chr5g0444351 | 48.718 | 117 | 60 | 0 | 17 | 133 | 6 | 122 | 1.05e-36 | 123 |
Msa0357800 | MtrunA17_Chr8g0353981 | 54.237 | 118 | 52 | 1 | 12 | 129 | 3 | 118 | 8.31e-35 | 121 |
Msa0357800 | MtrunA17_Chr5g0432451 | 58.824 | 102 | 42 | 0 | 15 | 116 | 42 | 143 | 2.43e-34 | 120 |
Msa0357800 | MtrunA17_Chr1g0184281 | 52.381 | 105 | 49 | 1 | 12 | 115 | 11 | 115 | 3.98e-34 | 119 |
Msa0357800 | MtrunA17_Chr5g0435641 | 42.177 | 147 | 75 | 4 | 11 | 150 | 1 | 144 | 6.73e-33 | 115 |
Msa0357800 | MtrunA17_Chr7g0260971 | 51.429 | 105 | 50 | 1 | 15 | 118 | 13 | 117 | 7.42e-33 | 115 |
Msa0357800 | MtrunA17_Chr6g0460951 | 40.141 | 142 | 74 | 3 | 15 | 153 | 39 | 172 | 6.85e-32 | 113 |
Msa0357800 | MtrunA17_Chr7g0261031 | 51.402 | 107 | 50 | 2 | 11 | 115 | 2 | 108 | 3.92e-31 | 111 |
Msa0357800 | MtrunA17_Chr8g0351721 | 47.934 | 121 | 60 | 2 | 13 | 132 | 15 | 133 | 1.19e-30 | 110 |
Msa0357800 | MtrunA17_Chr8g0351701 | 53.125 | 96 | 44 | 1 | 16 | 110 | 23 | 118 | 1.26e-30 | 110 |
Msa0357800 | MtrunA17_Chr8g0374591 | 46.535 | 101 | 54 | 0 | 16 | 116 | 8 | 108 | 2.61e-30 | 106 |
Msa0357800 | MtrunA17_Chr1g0184271 | 41.481 | 135 | 76 | 2 | 16 | 149 | 12 | 144 | 3.43e-30 | 109 |
Msa0357800 | MtrunA17_Chr7g0245871 | 50.980 | 102 | 49 | 1 | 16 | 116 | 27 | 128 | 1.00e-29 | 108 |
Msa0357800 | MtrunA17_Chr8g0374601 | 45.536 | 112 | 59 | 1 | 16 | 127 | 26 | 135 | 1.42e-29 | 108 |
Msa0357800 | MtrunA17_Chr7g0245861 | 52.688 | 93 | 41 | 2 | 13 | 102 | 9 | 101 | 1.71e-27 | 99.8 |
Msa0357800 | MtrunA17_Chr6g0460941 | 46.591 | 88 | 46 | 1 | 16 | 102 | 7 | 94 | 4.36e-25 | 92.4 |
Msa0357800 | MtrunA17_Chr6g0452691 | 37.719 | 114 | 70 | 1 | 11 | 123 | 4 | 117 | 5.10e-25 | 94.7 |
Msa0357800 | MtrunA17_Chr8g0374581 | 42.478 | 113 | 62 | 2 | 16 | 127 | 8 | 118 | 2.66e-23 | 91.3 |
Msa0357800 | MtrunA17_Chr6g0452661 | 34.234 | 111 | 72 | 1 | 14 | 123 | 7 | 117 | 2.52e-21 | 86.7 |
Msa0357800 | MtrunA17_Chr6g0452671 | 35.577 | 104 | 67 | 0 | 17 | 120 | 12 | 115 | 3.63e-21 | 85.1 |
Msa0357800 | MtrunA17_Chr2g0330201 | 37.500 | 104 | 65 | 0 | 17 | 120 | 20 | 123 | 3.76e-21 | 87.0 |
Msa0357800 | MtrunA17_Chr4g0059901 | 41.935 | 93 | 54 | 0 | 17 | 109 | 11 | 103 | 5.03e-21 | 86.3 |
Msa0357800 | MtrunA17_Chr4g0040831 | 37.391 | 115 | 66 | 1 | 17 | 131 | 16 | 124 | 1.60e-20 | 83.6 |
Msa0357800 | MtrunA17_Chr8g0342351 | 35.000 | 100 | 65 | 0 | 17 | 116 | 13 | 112 | 8.87e-20 | 82.8 |
Msa0357800 | MtrunA17_Chr2g0326051 | 55.224 | 67 | 30 | 0 | 61 | 127 | 5 | 71 | 1.85e-19 | 79.0 |
Msa0357800 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 15 | 62 | 32 | 79 | 7.28e-19 | 76.3 |
Msa0357800 | MtrunA17_Chr4g0055441 | 32.456 | 114 | 76 | 1 | 17 | 129 | 3 | 116 | 8.09e-19 | 78.2 |
Msa0357800 | MtrunA17_Chr4g0046201 | 37.634 | 93 | 58 | 0 | 11 | 103 | 1 | 93 | 1.05e-18 | 80.1 |
Msa0357800 | MtrunA17_Chr5g0439111 | 40.964 | 83 | 48 | 1 | 14 | 95 | 7 | 89 | 1.52e-15 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0357800 | AT2G30130.1 | 63.910 | 133 | 44 | 1 | 13 | 141 | 5 | 137 | 2.52e-58 | 180 |
Msa0357800 | AT2G28500.1 | 50.355 | 141 | 69 | 1 | 15 | 155 | 54 | 193 | 2.51e-48 | 156 |
Msa0357800 | AT1G07900.1 | 63.889 | 108 | 37 | 1 | 15 | 122 | 32 | 137 | 6.50e-48 | 154 |
Msa0357800 | AT1G31320.1 | 59.350 | 123 | 50 | 0 | 7 | 129 | 4 | 126 | 4.24e-45 | 145 |
Msa0357800 | AT1G16530.1 | 60.748 | 107 | 41 | 1 | 15 | 120 | 13 | 119 | 2.57e-43 | 141 |
Msa0357800 | AT5G63090.4 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.29e-40 | 135 |
Msa0357800 | AT5G63090.3 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.29e-40 | 135 |
Msa0357800 | AT5G63090.2 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.29e-40 | 135 |
Msa0357800 | AT5G63090.1 | 62.264 | 106 | 39 | 1 | 14 | 118 | 9 | 114 | 1.29e-40 | 135 |
Msa0357800 | AT3G27650.1 | 60.194 | 103 | 41 | 0 | 14 | 116 | 37 | 139 | 2.92e-40 | 133 |
Msa0357800 | AT3G26620.1 | 49.600 | 125 | 54 | 1 | 17 | 141 | 6 | 121 | 4.81e-40 | 131 |
Msa0357800 | AT3G26660.1 | 57.000 | 100 | 43 | 0 | 17 | 116 | 6 | 105 | 1.65e-39 | 130 |
Msa0357800 | AT2G30340.1 | 52.941 | 119 | 56 | 0 | 15 | 133 | 51 | 169 | 9.15e-39 | 132 |
Msa0357800 | AT2G30340.2 | 52.941 | 119 | 56 | 0 | 15 | 133 | 52 | 170 | 1.16e-38 | 132 |
Msa0357800 | AT2G23660.2 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 2.61e-38 | 132 |
Msa0357800 | AT2G23660.3 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 2.61e-38 | 132 |
Msa0357800 | AT2G23660.1 | 51.695 | 118 | 54 | 2 | 14 | 130 | 3 | 118 | 2.61e-38 | 132 |
Msa0357800 | AT3G11090.1 | 54.310 | 116 | 52 | 1 | 14 | 128 | 9 | 124 | 1.41e-37 | 126 |
Msa0357800 | AT5G66870.1 | 52.459 | 122 | 57 | 1 | 12 | 132 | 3 | 124 | 4.98e-37 | 129 |
Msa0357800 | AT1G65620.1 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 5.16e-36 | 123 |
Msa0357800 | AT1G65620.4 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 5.16e-36 | 123 |
Msa0357800 | AT1G65620.3 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 5.16e-36 | 123 |
Msa0357800 | AT1G65620.5 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 5.16e-36 | 123 |
Msa0357800 | AT1G65620.2 | 60.000 | 105 | 42 | 0 | 12 | 116 | 5 | 109 | 5.16e-36 | 123 |
Msa0357800 | AT2G40470.2 | 60.784 | 102 | 40 | 0 | 15 | 116 | 19 | 120 | 2.92e-35 | 121 |
Msa0357800 | AT2G40470.1 | 60.784 | 102 | 40 | 0 | 15 | 116 | 44 | 145 | 3.68e-35 | 122 |
Msa0357800 | AT4G00210.1 | 48.031 | 127 | 55 | 3 | 11 | 131 | 1 | 122 | 1.03e-33 | 118 |
Msa0357800 | AT2G42430.1 | 53.846 | 104 | 47 | 1 | 14 | 116 | 13 | 116 | 2.73e-33 | 118 |
Msa0357800 | AT3G03760.1 | 52.427 | 103 | 48 | 1 | 15 | 116 | 50 | 152 | 2.87e-33 | 118 |
Msa0357800 | AT3G50510.1 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.03e-31 | 112 |
Msa0357800 | AT3G50510.2 | 46.018 | 113 | 59 | 1 | 4 | 116 | 2 | 112 | 1.03e-31 | 112 |
Msa0357800 | AT2G45410.1 | 45.238 | 126 | 65 | 2 | 19 | 140 | 19 | 144 | 1.89e-31 | 111 |
Msa0357800 | AT2G42440.1 | 43.750 | 128 | 69 | 3 | 11 | 135 | 1 | 128 | 4.85e-31 | 112 |
Msa0357800 | AT3G58190.1 | 49.495 | 99 | 49 | 1 | 16 | 113 | 11 | 109 | 9.00e-30 | 108 |
Msa0357800 | AT2G31310.1 | 40.714 | 140 | 73 | 3 | 11 | 140 | 1 | 140 | 1.16e-29 | 107 |
Msa0357800 | AT5G06080.1 | 41.600 | 125 | 69 | 2 | 12 | 132 | 3 | 127 | 8.98e-28 | 102 |
Msa0357800 | AT2G45420.1 | 46.154 | 104 | 55 | 1 | 19 | 121 | 40 | 143 | 3.26e-27 | 102 |
Msa0357800 | AT4G00220.1 | 48.077 | 104 | 53 | 1 | 19 | 121 | 20 | 123 | 3.70e-27 | 101 |
Msa0357800 | AT5G35900.1 | 40.777 | 103 | 61 | 0 | 17 | 119 | 6 | 108 | 3.50e-24 | 93.6 |
Msa0357800 | AT3G13850.1 | 36.800 | 125 | 65 | 3 | 17 | 127 | 37 | 161 | 2.07e-23 | 92.8 |
Msa0357800 | AT1G72980.1 | 42.056 | 107 | 60 | 1 | 12 | 116 | 7 | 113 | 1.04e-22 | 89.7 |
Msa0357800 | AT3G47870.1 | 38.889 | 90 | 55 | 0 | 10 | 99 | 30 | 119 | 1.63e-18 | 80.9 |
Msa0357800 | AT1G06280.1 | 45.455 | 77 | 42 | 0 | 17 | 93 | 25 | 101 | 2.04e-18 | 78.6 |
Msa0357800 | AT2G19820.1 | 38.542 | 96 | 58 | 1 | 15 | 109 | 11 | 106 | 1.51e-17 | 74.3 |
Msa0357800 | AT4G22700.1 | 40.659 | 91 | 52 | 2 | 17 | 106 | 6 | 95 | 2.23e-15 | 70.1 |
Msa0357800 | AT5G15060.1 | 41.892 | 74 | 39 | 2 | 17 | 87 | 18 | 90 | 7.63e-13 | 62.4 |
Msa0357800 | AT1G36000.1 | 29.348 | 92 | 65 | 0 | 11 | 102 | 4 | 95 | 1.23e-12 | 61.2 |
Find 22 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGAACTACGACAAACTTT+TGG | 0.258263 | 3_1:+41547031 | None:intergenic |
AGATTGAGTGACCCAGTTTA+TGG | 0.284882 | 3_1:-41544218 | Msa0357800:CDS |
AATAAGAAATATTATAATTA+AGG | 0.286474 | 3_1:+41544021 | None:intergenic |
GGAGCAAAGATGCAATCTTT+TGG | 0.343297 | 3_1:+41547075 | None:intergenic |
GCTCCAGCACAACCATAAAC+TGG | 0.357617 | 3_1:+41544206 | None:intergenic |
CATATATCACTTGCAAAATC+AGG | 0.363361 | 3_1:-41544183 | Msa0357800:CDS |
GCACCTTCCCTTTGCTGAAT+CGG | 0.373246 | 3_1:+41544272 | None:intergenic |
AGGTATTGAGCGAGTTCATC+TGG | 0.379557 | 3_1:+41544041 | None:intergenic |
CAACGTTGGCAGAATGTTGC+AGG | 0.398392 | 3_1:-41546992 | Msa0357800:intron |
GGTTCAAGAGAAGGAAAATA+AGG | 0.429065 | 3_1:+41547054 | None:intergenic |
TCTTGGTTGAATTGTGGTGC+TGG | 0.452174 | 3_1:+41544083 | None:intergenic |
GACCCAGTTTATGGTTGTGC+TGG | 0.452179 | 3_1:-41544209 | Msa0357800:CDS |
TAAAGTAAGATGTGTGATCT+TGG | 0.468213 | 3_1:+41544066 | None:intergenic |
GGATCTTCCGATTCAGCAAA+GGG | 0.503129 | 3_1:-41544279 | Msa0357800:CDS |
TTGCTCGAGCAACTGCAAGT+TGG | 0.520454 | 3_1:+41544144 | None:intergenic |
CTCCAGCACAACCATAAACT+GGG | 0.573541 | 3_1:+41544207 | None:intergenic |
GTGTGATCTTGGTTGAATTG+TGG | 0.577677 | 3_1:+41544077 | None:intergenic |
AGGATCTTCCGATTCAGCAA+AGG | 0.581668 | 3_1:-41544280 | Msa0357800:CDS |
AAAGTTTGTCGTAGTTCACA+AGG | 0.596548 | 3_1:-41547028 | Msa0357800:CDS |
AGAATCTTGCATGAAGCACA+TGG | 0.616501 | 3_1:+41547111 | None:intergenic |
CTTCCGATTCAGCAAAGGGA+AGG | 0.633097 | 3_1:-41544275 | Msa0357800:CDS |
GAAAAGAAAATTGTAAACAG+AGG | 0.681415 | 3_1:+41547159 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAAAAATACTACTAAAAA+AGG | + | chr3_1:41544730-41544749 | None:intergenic | 10.0% |
!! | ATTATATAAACAACTAAAAA+GGG | + | chr3_1:41544764-41544783 | None:intergenic | 10.0% |
!! | TATTATATAAACAACTAAAA+AGG | + | chr3_1:41544765-41544784 | None:intergenic | 10.0% |
!!! | GAGTATTATTTTATAATTAT+CGG | - | chr3_1:41544933-41544952 | Msa0357800:intron | 10.0% |
!!! | TTTTAATTTTACTGATTTTA+TGG | + | chr3_1:41545445-41545464 | None:intergenic | 10.0% |
!! | TTAATAAAATTGAGAAATAT+AGG | + | chr3_1:41545547-41545566 | None:intergenic | 10.0% |
!!! | AAAAAAAAAAAAAAAGTGTT+TGG | + | chr3_1:41546340-41546359 | None:intergenic | 10.0% |
!! | TAAATAATTAACCATTAAAA+AGG | + | chr3_1:41546617-41546636 | None:intergenic | 10.0% |
!!! | ATAAGTGTTTATTATTTTTT+AGG | - | chr3_1:41546659-41546678 | Msa0357800:intron | 10.0% |
!!! | TAAGTGTTTATTATTTTTTA+GGG | - | chr3_1:41546660-41546679 | Msa0357800:intron | 10.0% |
!! | TTAATCATCTAAAAAGTAAA+TGG | + | chr3_1:41544232-41544251 | None:intergenic | 15.0% |
!!! | ATTTTTTGTAGACATATTTT+AGG | - | chr3_1:41544413-41544432 | Msa0357800:intron | 15.0% |
!!! | TCTTTTATGTTTTTTATATC+CGG | + | chr3_1:41544616-41544635 | None:intergenic | 15.0% |
!! | GTATTAAATACAAATTCATA+AGG | + | chr3_1:41544643-41544662 | None:intergenic | 15.0% |
!! | TAAAAAAGAAAGCTAAAAAA+AGG | + | chr3_1:41544699-41544718 | None:intergenic | 15.0% |
!!! | TTTTTGAAAGAGTATTTTTT+TGG | + | chr3_1:41545501-41545520 | None:intergenic | 15.0% |
!!! | GTTTGATGATTTTTTTAAAT+TGG | + | chr3_1:41546233-41546252 | None:intergenic | 15.0% |
!!! | ATGATTTAAAACCTTTTTAA+TGG | - | chr3_1:41546603-41546622 | Msa0357800:intron | 15.0% |
!!! | AAGTGTTTATTATTTTTTAG+GGG | - | chr3_1:41546661-41546680 | Msa0357800:intron | 15.0% |
!! | CAATATAAACAACTAATCTT+GGG | + | chr3_1:41544284-41544303 | None:intergenic | 20.0% |
!! | ACAATATAAACAACTAATCT+TGG | + | chr3_1:41544285-41544304 | None:intergenic | 20.0% |
!!! | TAGTTTGTGAATAAAATGTT+TGG | - | chr3_1:41544350-41544369 | Msa0357800:intron | 20.0% |
!!! | ATTTTCAGAAAAGTAACTAT+TGG | - | chr3_1:41544492-41544511 | Msa0357800:intron | 20.0% |
!! | GAATAGAAAAAACTTAGAAA+AGG | + | chr3_1:41544672-41544691 | None:intergenic | 20.0% |
!!! | TAAGCAAATTTTGACTTTTT+AGG | - | chr3_1:41544808-41544827 | Msa0357800:intron | 20.0% |
!!! | ATCGGATTTTAAAATATAGT+TGG | - | chr3_1:41544951-41544970 | Msa0357800:intron | 20.0% |
!!! | AGTCATCAATTTATATGTTT+TGG | + | chr3_1:41545086-41545105 | None:intergenic | 20.0% |
!! | ATTAAAATCTAAATTGCACA+GGG | + | chr3_1:41545162-41545181 | None:intergenic | 20.0% |
!! | TATTAAAATCTAAATTGCAC+AGG | + | chr3_1:41545163-41545182 | None:intergenic | 20.0% |
!!! | TTAGATTTTAATATCCGAAT+TGG | - | chr3_1:41545170-41545189 | Msa0357800:intron | 20.0% |
!!! | TTTTGAACATATTTGTAACA+TGG | + | chr3_1:41545682-41545701 | None:intergenic | 20.0% |
!! | TCGGATTATAAAATACAAAT+TGG | - | chr3_1:41545826-41545845 | Msa0357800:intron | 20.0% |
!!! | TTTAAAATCTAACAATCTCA+AGG | - | chr3_1:41545898-41545917 | Msa0357800:intron | 20.0% |
!! | TTAAAATCTAACAATCTCAA+GGG | - | chr3_1:41545899-41545918 | Msa0357800:intron | 20.0% |
!! | TAGTCTAAATTGATTGAATA+TGG | - | chr3_1:41545979-41545998 | Msa0357800:intron | 20.0% |
!!! | TTTTTAATTCATCCACAAAA+TGG | - | chr3_1:41546148-41546167 | Msa0357800:intron | 20.0% |
!!! | AAACTGATTTAAAAAGTGAT+TGG | + | chr3_1:41546208-41546227 | None:intergenic | 20.0% |
!!! | TATTTAGGAAATTGCTTTTT+AGG | + | chr3_1:41546297-41546316 | None:intergenic | 20.0% |
!! | AGCAATTTCCTAAATATTTA+CGG | - | chr3_1:41546301-41546320 | Msa0357800:intron | 20.0% |
!!! | TTTTTTGTTTTGCAATGAAA+AGG | - | chr3_1:41546561-41546580 | Msa0357800:intron | 20.0% |
!! | TTTTCGAAGAAAAAAATGAG+TGG | - | chr3_1:41544034-41544053 | Msa0357800:CDS | 25.0% |
!! | TTTTCTTTTGGTCTCAAAAA+AGG | + | chr3_1:41544376-41544395 | None:intergenic | 25.0% |
! | TATATAATAATTACTCCCTC+TGG | - | chr3_1:41544776-41544795 | Msa0357800:intron | 25.0% |
! | CATTCAATAAATGATGTATG+TGG | + | chr3_1:41544872-41544891 | None:intergenic | 25.0% |
!! | ATTTTGCTTATAAATGAGAC+CGG | - | chr3_1:41544907-41544926 | Msa0357800:intron | 25.0% |
! | TTATAAAATAATACTCCCTC+CGG | + | chr3_1:41544929-41544948 | None:intergenic | 25.0% |
! | TACAAGTAGAATTGTCATAT+AGG | - | chr3_1:41545027-41545046 | Msa0357800:intron | 25.0% |
! | ATACTAAGCAAATCATGATT+GGG | + | chr3_1:41545062-41545081 | None:intergenic | 25.0% |
! | TATACTAAGCAAATCATGAT+TGG | + | chr3_1:41545063-41545082 | None:intergenic | 25.0% |
! | TTAAAATCTAAATTGCACAG+GGG | + | chr3_1:41545161-41545180 | None:intergenic | 25.0% |
!! | AAATGAGTTTTTCACCAATT+CGG | + | chr3_1:41545187-41545206 | None:intergenic | 25.0% |
! | TATATAATCTGAACTCAGTT+AGG | - | chr3_1:41545280-41545299 | Msa0357800:intron | 25.0% |
! | AATAACTATTCATGAGAGTT+AGG | + | chr3_1:41545342-41545361 | None:intergenic | 25.0% |
!!! | CTCTCATGAATAGTTATTTT+AGG | - | chr3_1:41545344-41545363 | Msa0357800:intron | 25.0% |
!!! | TTTTACTGATTTTATGGTCA+AGG | + | chr3_1:41545439-41545458 | None:intergenic | 25.0% |
!!! | TAACATGGATAGTCATTTTA+AGG | + | chr3_1:41545667-41545686 | None:intergenic | 25.0% |
!! | ATTTTCGGAAGGAAAAAAAT+AGG | - | chr3_1:41545923-41545942 | Msa0357800:intron | 25.0% |
!! | TTTTCGGAAGGAAAAAAATA+GGG | - | chr3_1:41545924-41545943 | Msa0357800:intron | 25.0% |
! | CTAAATTGATTGAATATGGT+TGG | - | chr3_1:41545983-41546002 | Msa0357800:intron | 25.0% |
! | GACTCAACTCATAAAAATTT+GGG | - | chr3_1:41546057-41546076 | Msa0357800:intron | 25.0% |
!!! | TTGATTTTTGAGCAATTAGA+GGG | + | chr3_1:41546099-41546118 | None:intergenic | 25.0% |
!!! | TTTGATTTTTGAGCAATTAG+AGG | + | chr3_1:41546100-41546119 | None:intergenic | 25.0% |
! | TGGATGAATTAAAAAGTGAT+TGG | + | chr3_1:41546143-41546162 | None:intergenic | 25.0% |
! | GCAATTTCCTAAATATTTAC+GGG | - | chr3_1:41546302-41546321 | Msa0357800:intron | 25.0% |
! | TCATTAACCCGTAAATATTT+AGG | + | chr3_1:41546312-41546331 | None:intergenic | 25.0% |
! | GTAATGTATTAAAGGTTTAG+GGG | + | chr3_1:41546479-41546498 | None:intergenic | 25.0% |
! | GGTAATGTATTAAAGGTTTA+GGG | + | chr3_1:41546480-41546499 | None:intergenic | 25.0% |
!!! | TGTTGTACTTTTTTACTATG+CGG | + | chr3_1:41546754-41546773 | None:intergenic | 25.0% |
!! | AAAAAGTACAACAATGTTGT+TGG | - | chr3_1:41546761-41546780 | Msa0357800:intron | 25.0% |
! | GCAATTAGCTATGAAGTTTT+AGG | + | chr3_1:41544446-41544465 | None:intergenic | 30.0% |
! | TATTGGTTGTTACCACTTAA+TGG | - | chr3_1:41544509-41544528 | Msa0357800:intron | 30.0% |
ATTGGTTGTTACCACTTAAT+GGG | - | chr3_1:41544510-41544529 | Msa0357800:intron | 30.0% | |
!!! | TGTTTTTTATATCCGGAAGT+TGG | + | chr3_1:41544609-41544628 | None:intergenic | 30.0% |
TTCATAAACACCCTATTTCA+AGG | - | chr3_1:41545211-41545230 | Msa0357800:intron | 30.0% | |
TCATAAACACCCTATTTCAA+GGG | - | chr3_1:41545212-41545231 | Msa0357800:intron | 30.0% | |
! | CTGTTTTATCCCTTGAAATA+GGG | + | chr3_1:41545224-41545243 | None:intergenic | 30.0% |
! | ACTGTTTTATCCCTTGAAAT+AGG | + | chr3_1:41545225-41545244 | None:intergenic | 30.0% |
TATATAATCCGAACTCAGTT+AGG | - | chr3_1:41545251-41545270 | Msa0357800:intron | 30.0% | |
! | GATGGATCATTAACATTTTC+TGG | - | chr3_1:41545302-41545321 | Msa0357800:intron | 30.0% |
ATTATTCTTCCTAACTCTCA+TGG | + | chr3_1:41545639-41545658 | None:intergenic | 30.0% | |
TCCGAAAACCTCAAAAAATA+GGG | + | chr3_1:41545811-41545830 | None:intergenic | 30.0% | |
ATCCGAAAACCTCAAAAAAT+AGG | + | chr3_1:41545812-41545831 | None:intergenic | 30.0% | |
! | TGAGTTTTTCCTTTGTAATG+AGG | + | chr3_1:41545870-41545889 | None:intergenic | 30.0% |
TACAAAGGAAAAACTCAGTT+CGG | - | chr3_1:41545873-41545892 | Msa0357800:intron | 30.0% | |
CGACTCAACTCATAAAAATT+TGG | - | chr3_1:41546056-41546075 | Msa0357800:intron | 30.0% | |
AAATTTGGGTGTAGTTCATT+AGG | - | chr3_1:41546071-41546090 | Msa0357800:intron | 30.0% | |
! | GACACTTAATAACCATTTTG+TGG | + | chr3_1:41546163-41546182 | None:intergenic | 30.0% |
!! | TCGTTCGACAATTTTTAGAT+TGG | - | chr3_1:41546181-41546200 | Msa0357800:intron | 30.0% |
! | ATATTTACGGGTTAATGAGT+CGG | - | chr3_1:41546314-41546333 | Msa0357800:intron | 30.0% |
!! | TAGGGGTCAAATTTTGATAA+GGG | + | chr3_1:41546462-41546481 | None:intergenic | 30.0% |
!! | TTAGGGGTCAAATTTTGATA+AGG | + | chr3_1:41546463-41546482 | None:intergenic | 30.0% |
GGGTAATGTATTAAAGGTTT+AGG | + | chr3_1:41546481-41546500 | None:intergenic | 30.0% | |
! | TTTTACTATGCGGAAAAGTA+AGG | + | chr3_1:41546744-41546763 | None:intergenic | 30.0% |
AAGAACACAATGATTGATCA+AGG | + | chr3_1:41546812-41546831 | None:intergenic | 30.0% | |
! | TTTTTCTCATACAATGCATC+AGG | - | chr3_1:41546875-41546894 | Msa0357800:intron | 30.0% |
! | CTGATTTTGCAAGTGATATA+TGG | + | chr3_1:41546994-41547013 | None:intergenic | 30.0% |
CATATATCACTTGCAAAATC+AGG | - | chr3_1:41546992-41547011 | Msa0357800:intron | 30.0% | |
TAAAGTAAGATGTGTGATCT+TGG | + | chr3_1:41547112-41547131 | None:intergenic | 30.0% | |
! | GAGCAAAGATGCAATCTTTT+GGG | + | chr3_1:41544102-41544121 | None:intergenic | 35.0% |
GGTTCAAGAGAAGGAAAATA+AGG | + | chr3_1:41544124-41544143 | None:intergenic | 35.0% | |
! | TGAACTACGACAAACTTTTG+GGG | + | chr3_1:41544145-41544164 | None:intergenic | 35.0% |
! | GTGAACTACGACAAACTTTT+GGG | + | chr3_1:41544146-41544165 | None:intergenic | 35.0% |
! | TGTGAACTACGACAAACTTT+TGG | + | chr3_1:41544147-41544166 | None:intergenic | 35.0% |
AAAGTTTGTCGTAGTTCACA+AGG | - | chr3_1:41544147-41544166 | Msa0357800:CDS | 35.0% | |
!!! | CATTCCTCGCTTTTTTCTTT+TGG | + | chr3_1:41544388-41544407 | None:intergenic | 35.0% |
TTGGTTGTTACCACTTAATG+GGG | - | chr3_1:41544511-41544530 | Msa0357800:intron | 35.0% | |
! | CCATCGGATCACAATTTTTA+TGG | + | chr3_1:41544555-41544574 | None:intergenic | 35.0% |
CCATAAAAATTGTGATCCGA+TGG | - | chr3_1:41544552-41544571 | Msa0357800:intron | 35.0% | |
GTTCTCAAATTGTTCACCAT+CGG | + | chr3_1:41544571-41544590 | None:intergenic | 35.0% | |
TGCTTATAATAGTGACCAGA+GGG | + | chr3_1:41544794-41544813 | None:intergenic | 35.0% | |
TTGCTTATAATAGTGACCAG+AGG | + | chr3_1:41544795-41544814 | None:intergenic | 35.0% | |
CATTGTAACTTTAACAGTCG+TGG | + | chr3_1:41544993-41545012 | None:intergenic | 35.0% | |
TAAGCAAATCATGATTGGGT+TGG | + | chr3_1:41545058-41545077 | None:intergenic | 35.0% | |
!! | GCATTTTTGGAAAAAGCACA+AGG | + | chr3_1:41545139-41545158 | None:intergenic | 35.0% |
TAATCCATCCTAACTGAGTT+CGG | + | chr3_1:41545262-41545281 | None:intergenic | 35.0% | |
TAATCTGAACTCAGTTAGGA+TGG | - | chr3_1:41545284-41545303 | Msa0357800:intron | 35.0% | |
!!! | ACCGGATTTTTGGTTAAGAA+CGG | + | chr3_1:41545380-41545399 | None:intergenic | 35.0% |
! | TAACCAAAAATCCGGTTTTC+AGG | - | chr3_1:41545384-41545403 | Msa0357800:intron | 35.0% |
!! | CTCTCATGGATAGTCATTTT+AGG | + | chr3_1:41545625-41545644 | None:intergenic | 35.0% |
AATGACTATCCATGAGAGTT+AGG | - | chr3_1:41545627-41545646 | Msa0357800:intron | 35.0% | |
! | TTTCTAGGGGAAAAACAGTT+AGG | + | chr3_1:41545735-41545754 | None:intergenic | 35.0% |
! | CCTAAACACTCTTTTTCTAG+GGG | + | chr3_1:41545748-41545767 | None:intergenic | 35.0% |
! | CCCTAAACACTCTTTTTCTA+GGG | + | chr3_1:41545749-41545768 | None:intergenic | 35.0% |
!! | CCCTAGAAAAAGAGTGTTTA+GGG | - | chr3_1:41545746-41545765 | Msa0357800:intron | 35.0% |
!! | CCTAGAAAAAGAGTGTTTAG+GGG | - | chr3_1:41545747-41545766 | Msa0357800:intron | 35.0% |
!!! | GCCCTATTTTTTGAGGTTTT+CGG | - | chr3_1:41545807-41545826 | Msa0357800:intron | 35.0% |
! | CATTTTCCACCTCATTACAA+AGG | - | chr3_1:41545858-41545877 | Msa0357800:intron | 35.0% |
! | GTTTTTCCTTTGTAATGAGG+TGG | + | chr3_1:41545867-41545886 | None:intergenic | 35.0% |
!!! | AACAATCTCAAGGGCATTTT+CGG | - | chr3_1:41545908-41545927 | Msa0357800:intron | 35.0% |
CTCAAAAATCAAACTACCGT+TGG | - | chr3_1:41546107-41546126 | Msa0357800:intron | 35.0% | |
!!! | AATTGCTTTTTAGGCAACCA+CGG | + | chr3_1:41546288-41546307 | None:intergenic | 35.0% |
TCTAGATATAGTCACGATTG+AGG | - | chr3_1:41546366-41546385 | Msa0357800:intron | 35.0% | |
GCTAAGGGGTAATGTATTAA+AGG | + | chr3_1:41546487-41546506 | None:intergenic | 35.0% | |
AATCAAACCTGCATGATGTA+GGG | + | chr3_1:41546535-41546554 | None:intergenic | 35.0% | |
AGAATCTTGCATGAAGCACA+TGG | + | chr3_1:41544067-41544086 | None:intergenic | 40.0% | |
! | GGAGCAAAGATGCAATCTTT+TGG | + | chr3_1:41544103-41544122 | None:intergenic | 40.0% |
!!! | AACTTTTGGGGTTCAAGAGA+AGG | + | chr3_1:41544133-41544152 | None:intergenic | 40.0% |
! | GTCGTAGTTCACAAGGTTTT+TGG | - | chr3_1:41544154-41544173 | Msa0357800:CDS | 40.0% |
! | GGAACACTAAAAAGAGTACG+AGG | + | chr3_1:41544211-41544230 | None:intergenic | 40.0% |
GAGACCAAAAGAAAAAAGCG+AGG | - | chr3_1:41544381-41544400 | Msa0357800:intron | 40.0% | |
TTGCTTATAAATGAGACCGG+AGG | - | chr3_1:41544910-41544929 | Msa0357800:intron | 40.0% | |
TGCTTATAAATGAGACCGGA+GGG | - | chr3_1:41544911-41544930 | Msa0357800:intron | 40.0% | |
!!! | AAATTGCACAGGGGCATTTT+TGG | + | chr3_1:41545152-41545171 | None:intergenic | 40.0% |
TAATCCGAACTCAGTTAGGA+TGG | - | chr3_1:41545255-41545274 | Msa0357800:intron | 40.0% | |
GCCGTTCTTAACCAAAAATC+CGG | - | chr3_1:41545376-41545395 | Msa0357800:intron | 40.0% | |
! | TAGCCTGAAAACCGGATTTT+TGG | + | chr3_1:41545390-41545409 | None:intergenic | 40.0% |
TGATCAAGTAGCCTGAAAAC+CGG | + | chr3_1:41545398-41545417 | None:intergenic | 40.0% | |
GATCAGATTGCTCCAAAACT+TGG | - | chr3_1:41545413-41545432 | Msa0357800:intron | 40.0% | |
! | TTATGGTCAAGGCCAAGTTT+TGG | + | chr3_1:41545428-41545447 | None:intergenic | 40.0% |
!! | CCCCTAGAAAAAGAGTGTTT+AGG | - | chr3_1:41545745-41545764 | Msa0357800:intron | 40.0% |
! | CCCCTAAACACTCTTTTTCT+AGG | + | chr3_1:41545750-41545769 | None:intergenic | 40.0% |
! | GGCGCGTTACTTGAATTTTT+CGG | + | chr3_1:41545790-41545809 | None:intergenic | 40.0% |
GGTTGGATCGATTGTTGTAA+TGG | - | chr3_1:41546000-41546019 | Msa0357800:intron | 40.0% | |
TTGAGTCGTGAAGTTCAACA+AGG | + | chr3_1:41546044-41546063 | None:intergenic | 40.0% | |
!! | CAAACTACCGTTGGTTTGAT+TGG | - | chr3_1:41546116-41546135 | Msa0357800:intron | 40.0% |
GATTGGACCAATCAAACCAA+CGG | + | chr3_1:41546126-41546145 | None:intergenic | 40.0% | |
AAACAGTAGTTAACTGTCGC+TGG | - | chr3_1:41546249-41546268 | Msa0357800:intron | 40.0% | |
!!! | ATTGCTTTTTAGGCAACCAC+GGG | + | chr3_1:41546287-41546306 | None:intergenic | 40.0% |
! | CTCAACTGGTTTAAGCTAAG+GGG | + | chr3_1:41546501-41546520 | None:intergenic | 40.0% |
! | GCTCAACTGGTTTAAGCTAA+GGG | + | chr3_1:41546502-41546521 | None:intergenic | 40.0% |
! | AGCTCAACTGGTTTAAGCTA+AGG | + | chr3_1:41546503-41546522 | None:intergenic | 40.0% |
ATCAAACCTGCATGATGTAG+GGG | + | chr3_1:41546534-41546553 | None:intergenic | 40.0% | |
GAATCAAACCTGCATGATGT+AGG | + | chr3_1:41546536-41546555 | None:intergenic | 40.0% | |
AGATTGAGTGACCCAGTTTA+TGG | - | chr3_1:41546957-41546976 | Msa0357800:intron | 40.0% | |
GTGTGATCTTGGTTGAATTG+TGG | + | chr3_1:41547101-41547120 | None:intergenic | 40.0% | |
GTGAGTAGAACCCCATTAAG+TGG | + | chr3_1:41544524-41544543 | None:intergenic | 45.0% | |
ATTGAGCAATCGCCAACTTC+CGG | - | chr3_1:41544594-41544613 | Msa0357800:intron | 45.0% | |
!!! | GTAACGCGCCCTATTTTTTG+AGG | - | chr3_1:41545800-41545819 | Msa0357800:intron | 45.0% |
!!! | ATCTCAAGGGCATTTTCGGA+AGG | - | chr3_1:41545912-41545931 | Msa0357800:intron | 45.0% |
CGCTCGAGAAATGAATATGG+TGG | - | chr3_1:41545947-41545966 | Msa0357800:intron | 45.0% | |
TCAAACCTGCATGATGTAGG+GGG | + | chr3_1:41546533-41546552 | None:intergenic | 45.0% | |
AGGATCTTCCGATTCAGCAA+AGG | - | chr3_1:41546895-41546914 | Msa0357800:intron | 45.0% | |
GGATCTTCCGATTCAGCAAA+GGG | - | chr3_1:41546896-41546915 | Msa0357800:intron | 45.0% | |
CTCCAGCACAACCATAAACT+GGG | + | chr3_1:41546971-41546990 | None:intergenic | 45.0% | |
TCTTGGTTGAATTGTGGTGC+TGG | + | chr3_1:41547095-41547114 | None:intergenic | 45.0% | |
!! | AGGTATTGAGCGAGTTCATC+TGG | + | chr3_1:41547137-41547156 | None:intergenic | 45.0% |
!! | AATAAGAAATATTATAATTA+AGG | + | chr3_1:41547157-41547176 | None:intergenic | 5.0% |
!!! | GTTTTTGGCGCTAGCAACGT+TGG | - | chr3_1:41544169-41544188 | Msa0357800:CDS | 50.0% |
CAACGTTGGCAGAATGTTGC+AGG | - | chr3_1:41544183-41544202 | Msa0357800:CDS | 50.0% | |
GGGCGCTCGAGAAATGAATA+TGG | - | chr3_1:41545944-41545963 | Msa0357800:intron | 50.0% | |
CAAACCTGCATGATGTAGGG+GGG | + | chr3_1:41546532-41546551 | None:intergenic | 50.0% | |
CTTCCGATTCAGCAAAGGGA+AGG | - | chr3_1:41546900-41546919 | Msa0357800:intron | 50.0% | |
GCACCTTCCCTTTGCTGAAT+CGG | + | chr3_1:41546906-41546925 | None:intergenic | 50.0% | |
GACCCAGTTTATGGTTGTGC+TGG | - | chr3_1:41546966-41546985 | Msa0357800:intron | 50.0% | |
GCTCCAGCACAACCATAAAC+TGG | + | chr3_1:41546972-41546991 | None:intergenic | 50.0% | |
TTGCTCGAGCAACTGCAAGT+TGG | + | chr3_1:41547034-41547053 | None:intergenic | 50.0% | |
GGCGCGCGAGAATGACATAT+GGG | + | chr3_1:41545118-41545137 | None:intergenic | 55.0% | |
AGGCGCGCGAGAATGACATA+TGG | + | chr3_1:41545119-41545138 | None:intergenic | 55.0% | |
CTGGATGTAAGAGCAACCCG+TGG | - | chr3_1:41546268-41546287 | Msa0357800:intron | 55.0% | |
! | GGGGGGTTTGATAGCTCAAC+TGG | + | chr3_1:41546515-41546534 | None:intergenic | 55.0% |
CAAACCCCCCTACATCATGC+AGG | - | chr3_1:41546525-41546544 | Msa0357800:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 41544019 | 41547178 | 41544019 | ID=Msa0357800;Name=Msa0357800 |
chr3_1 | mRNA | 41544019 | 41547178 | 41544019 | ID=Msa0357800-mRNA-1;Parent=Msa0357800;Name=Msa0357800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|155 |
chr3_1 | exon | 41546993 | 41547178 | 41546993 | ID=Msa0357800-mRNA-1:exon:7233;Parent=Msa0357800-mRNA-1 |
chr3_1 | exon | 41544019 | 41544300 | 41544019 | ID=Msa0357800-mRNA-1:exon:7232;Parent=Msa0357800-mRNA-1 |
chr3_1 | CDS | 41546993 | 41547178 | 41546993 | ID=Msa0357800-mRNA-1:cds;Parent=Msa0357800-mRNA-1 |
chr3_1 | CDS | 41544019 | 41544300 | 41544019 | ID=Msa0357800-mRNA-1:cds;Parent=Msa0357800-mRNA-1 |
Gene Sequence |
Protein sequence |