Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363910 | KEH35146.1 | 89.773 | 88 | 9 | 0 | 71 | 158 | 9 | 96 | 5.33e-48 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363910 | A0A072V0B1 | 89.773 | 88 | 9 | 0 | 71 | 158 | 9 | 96 | 2.55e-48 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077610 | Msa0363910 | 0.877505 | 5.955871e-69 | -8.615850e-47 |
| Msa0077670 | Msa0363910 | 0.885153 | 1.039495e-71 | -8.615850e-47 |
| Msa0157310 | Msa0363910 | 0.886286 | 3.902834e-72 | -8.615850e-47 |
| Msa0233810 | Msa0363910 | 0.833352 | 5.601520e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGGGATGATCCATTTC+CGG | 0.229145 | 3_1:-56561106 | Msa0363910:CDS |
| GAGTCTCGACAGCAACTTAA+TGG | 0.240881 | 3_1:+56561129 | Msa0363920:CDS |
| AGCTCTACGGAATTGGAATT+TGG | 0.247116 | 3_1:+56558240 | None:intergenic |
| TTGACAATGGCTTGAAGTTC+CGG | 0.315301 | 3_1:+56559178 | None:intergenic |
| AACAAAGAGCTCTACGGAAT+TGG | 0.327073 | 3_1:+56558233 | None:intergenic |
| AAATTGTGCCAAAAGCTTCT+TGG | 0.335598 | 3_1:-56560648 | Msa0363910:CDS |
| AATTGTGCCAAAAGCTTCTT+GGG | 0.341672 | 3_1:-56560647 | Msa0363910:CDS |
| TGCATTTCCCAAGAAGCTTT+TGG | 0.342440 | 3_1:+56560640 | None:intergenic |
| GAGAATGAAGGATGACATAA+AGG | 0.345215 | 3_1:-56558443 | Msa0363910:CDS |
| TGCTCGGAGGTCGCCGGAAA+TGG | 0.366381 | 3_1:+56561093 | None:intergenic |
| GTTGCTGTCGAGACTCTTCT+TGG | 0.370381 | 3_1:-56561122 | Msa0363910:CDS |
| ATGAAGCAGATCTTCCTGTT+TGG | 0.407488 | 3_1:-56558391 | Msa0363910:CDS |
| TCCGAGCATCCGTCGAGTAC+TGG | 0.429654 | 3_1:-56561078 | Msa0363910:CDS |
| ACATGTTTCTGTTGCATCCA+TGG | 0.469525 | 3_1:-56559155 | Msa0363910:intron |
| TGGTGTACGGGTTACATCTC+CGG | 0.477444 | 3_1:-56559197 | Msa0363910:CDS |
| TATGATTACCTTGATTATGT+AGG | 0.491010 | 3_1:+56558359 | None:intergenic |
| GTAGGAGTTGATCTCCAAAC+AGG | 0.497937 | 3_1:+56558377 | None:intergenic |
| TTGCTGTCGAGACTCTTCTT+GGG | 0.505566 | 3_1:-56561121 | Msa0363910:CDS |
| TCCAGTACTCGACGGATGCT+CGG | 0.515552 | 3_1:+56561077 | None:intergenic |
| ATGACATAAAGGAGATAAGA+TGG | 0.525273 | 3_1:-56558432 | Msa0363910:CDS |
| GACGGATGCTCGGAGGTCGC+CGG | 0.537445 | 3_1:+56561087 | None:intergenic |
| GATCAACTCCTACATAATCA+AGG | 0.538359 | 3_1:-56558367 | Msa0363910:intron |
| TCGGACAGAGAGGAGGAAGA+TGG | 0.550968 | 3_1:+56561183 | Msa0363920:CDS |
| GGTCGTGTTGAAGAGAATGA+AGG | 0.558124 | 3_1:-56558455 | Msa0363910:CDS |
| AAGTTTAACAAAGAGCTCTA+CGG | 0.566049 | 3_1:+56558227 | None:intergenic |
| TCATGTTGCAGGGATGTAGG+TGG | 0.572168 | 3_1:-56560674 | Msa0363910:intron |
| GTTAAACTTAATTTACACCC+TGG | 0.604232 | 3_1:-56558213 | Msa0363910:CDS |
| TTGTAGATCGGACAGAGAGG+AGG | 0.610463 | 3_1:+56561176 | Msa0363920:CDS |
| AACAGAAACATGTTTGACAA+TGG | 0.625197 | 3_1:+56559165 | None:intergenic |
| AGTCGGATAGAATTGTAGAT+CGG | 0.627874 | 3_1:+56561164 | Msa0363920:CDS |
| GAATTGTAGATCGGACAGAG+AGG | 0.640211 | 3_1:+56561173 | Msa0363920:CDS |
| ATCGGAGATCCAGTACTCGA+CGG | 0.647965 | 3_1:+56561069 | None:intergenic |
| AGTACTCGACGGATGCTCGG+AGG | 0.722695 | 3_1:+56561080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAAAATCCAATATA+CGG | + | chr3_1:56558363-56558382 | None:intergenic | 10.0% |
| !! | GAATAAAATAAAAAGAAATA+AGG | + | chr3_1:56558609-56558628 | None:intergenic | 10.0% |
| !!! | CTGTATATTATATTTTTTTA+AGG | - | chr3_1:56558628-56558647 | Msa0363910:intron | 10.0% |
| !!! | ATTTGAAAATCTATTTTAAA+GGG | + | chr3_1:56559453-56559472 | None:intergenic | 10.0% |
| !!! | TTTTAGGAAATTTTTATATT+CGG | - | chr3_1:56560315-56560334 | Msa0363910:intron | 10.0% |
| !!! | CACATTTTTTATGTTAAAAA+AGG | + | chr3_1:56558932-56558951 | None:intergenic | 15.0% |
| !!! | GATTTGAAAATCTATTTTAA+AGG | + | chr3_1:56559454-56559473 | None:intergenic | 15.0% |
| !! | TTAGAAGAAAAAAAATAAAG+AGG | + | chr3_1:56559883-56559902 | None:intergenic | 15.0% |
| !! | TAAAAAAAACACAACAATTT+GGG | + | chr3_1:56560300-56560319 | None:intergenic | 15.0% |
| !! | CAGTTTATAACTAATTTATT+CGG | + | chr3_1:56560417-56560436 | None:intergenic | 15.0% |
| !! | TCATAAAAAAAACCGTATAT+TGG | - | chr3_1:56558348-56558367 | Msa0363910:intron | 20.0% |
| !!! | TTTATTTTTTTTCATGTTGC+AGG | - | chr3_1:56558707-56558726 | Msa0363910:intron | 20.0% |
| !!! | TTATTTTTTTTCATGTTGCA+GGG | - | chr3_1:56558708-56558727 | Msa0363910:intron | 20.0% |
| !!! | TTTCTTTTTAACCAAAAAGA+GGG | + | chr3_1:56558848-56558867 | None:intergenic | 20.0% |
| !!! | AAAAAAGGTTTTGATATTAC+AGG | - | chr3_1:56558899-56558918 | Msa0363910:intron | 20.0% |
| !!! | ATAAGTAGTTATTTCAAAAG+TGG | + | chr3_1:56559232-56559251 | None:intergenic | 20.0% |
| !!! | AATAACCAGTTTTCAAAAAA+AGG | - | chr3_1:56559288-56559307 | Msa0363910:intron | 20.0% |
| !!! | ATAACCAGTTTTCAAAAAAA+GGG | - | chr3_1:56559289-56559308 | Msa0363910:intron | 20.0% |
| !! | AATCTTCATAAAGAAAATCA+AGG | - | chr3_1:56559391-56559410 | Msa0363910:intron | 20.0% |
| !!! | AAACATAGCATTTAAAACAA+GGG | + | chr3_1:56559481-56559500 | None:intergenic | 20.0% |
| !!! | TAAACATAGCATTTAAAACA+AGG | + | chr3_1:56559482-56559501 | None:intergenic | 20.0% |
| !! | ATATGTTAAAATATAGTAGC+TGG | - | chr3_1:56559566-56559585 | Msa0363910:intron | 20.0% |
| !! | AAAAGATTTAAAAACGCAAA+AGG | - | chr3_1:56559927-56559946 | Msa0363910:intron | 20.0% |
| !!! | AGTTTTCTTAAGTTATTCAT+AGG | + | chr3_1:56560071-56560090 | None:intergenic | 20.0% |
| !!! | TTTATTTTCATTTTCAGCTA+TGG | - | chr3_1:56560175-56560194 | Msa0363910:intron | 20.0% |
| !! | CTAAAAAAAACACAACAATT+TGG | + | chr3_1:56560301-56560320 | None:intergenic | 20.0% |
| !!! | CAAATTGTTGTGTTTTTTTT+AGG | - | chr3_1:56560299-56560318 | Msa0363910:intron | 20.0% |
| !! | TGTCTGTATCTATAAAATAA+TGG | - | chr3_1:56560503-56560522 | Msa0363910:intron | 20.0% |
| !! | GTCTGTATCTATAAAATAAT+GGG | - | chr3_1:56560504-56560523 | Msa0363910:intron | 20.0% |
| !!! | AAAATTTGAGTATTTTGCTT+TGG | + | chr3_1:56560844-56560863 | None:intergenic | 20.0% |
| !! | ACAATAACATTCAATAGAAT+TGG | + | chr3_1:56561091-56561110 | None:intergenic | 20.0% |
| !!! | ACGGTTTTTTTTATGAGAAT+CGG | + | chr3_1:56558344-56558363 | None:intergenic | 25.0% |
| ! | ACAAAATCAAACTACGATTA+TGG | + | chr3_1:56558469-56558488 | None:intergenic | 25.0% |
| ! | AGTTAGTATTTATTTCCTTG+CGG | - | chr3_1:56558576-56558595 | Msa0363910:intron | 25.0% |
| ! | TAGGAAAGGACATAAAAAAA+GGG | + | chr3_1:56558818-56558837 | None:intergenic | 25.0% |
| ! | ATAGGAAAGGACATAAAAAA+AGG | + | chr3_1:56558819-56558838 | None:intergenic | 25.0% |
| !! | TTCTTTTTAACCAAAAAGAG+GGG | + | chr3_1:56558847-56558866 | None:intergenic | 25.0% |
| !! | CTTTCTTTTTAACCAAAAAG+AGG | + | chr3_1:56558849-56558868 | None:intergenic | 25.0% |
| !!! | CTTTTTGGTTAAAAAGAAAG+CGG | - | chr3_1:56558849-56558868 | Msa0363910:intron | 25.0% |
| ! | ACTGATCTTGTATAGAAAAA+AGG | - | chr3_1:56558884-56558903 | Msa0363910:intron | 25.0% |
| !!! | TTTTCGTGATGGAAAATAAA+TGG | - | chr3_1:56559097-56559116 | Msa0363910:intron | 25.0% |
| !! | AACATAGCATTTAAAACAAG+GGG | + | chr3_1:56559480-56559499 | None:intergenic | 25.0% |
| ! | AGCTCAGATAAAACAATATA+CGG | + | chr3_1:56559618-56559637 | None:intergenic | 25.0% |
| !!! | TATAGATCAAGGTTGATAAA+GGG | + | chr3_1:56559701-56559720 | None:intergenic | 25.0% |
| !!! | TTATAGATCAAGGTTGATAA+AGG | + | chr3_1:56559702-56559721 | None:intergenic | 25.0% |
| ! | CAATGATGAATTATAGATCA+AGG | + | chr3_1:56559712-56559731 | None:intergenic | 25.0% |
| !!! | TAAATCTTTTTTGCAAGAGT+TGG | + | chr3_1:56559917-56559936 | None:intergenic | 25.0% |
| ! | TTTAAAAACGCAAAAGGTAA+TGG | - | chr3_1:56559933-56559952 | Msa0363910:intron | 25.0% |
| ! | ATAAATGTCATCTTTACATG+AGG | + | chr3_1:56560160-56560179 | None:intergenic | 25.0% |
| ! | TTTCTATATACAAACAAGAG+TGG | + | chr3_1:56560271-56560290 | None:intergenic | 25.0% |
| ! | ATACCTATTTATTATACACG+TGG | - | chr3_1:56560534-56560553 | Msa0363910:intron | 25.0% |
| ! | TATCCACGTGTATAATAAAT+AGG | + | chr3_1:56560540-56560559 | None:intergenic | 25.0% |
| ! | GAAAATTGATGAAACAATAC+AGG | - | chr3_1:56560913-56560932 | Msa0363910:intron | 25.0% |
| ! | TATGATTACCTTGATTATGT+AGG | + | chr3_1:56561036-56561055 | None:intergenic | 25.0% |
| ! | ATTCAATAGAATTGGACAAA+AGG | + | chr3_1:56561083-56561102 | None:intergenic | 25.0% |
| AATGGTTTCGAAAAATGAGT+CGG | + | chr3_1:56558248-56558267 | None:intergenic | 30.0% | |
| ! | TTTGCACGGTCAAAATATTT+TGG | - | chr3_1:56558429-56558448 | Msa0363910:CDS | 30.0% |
| ! | TTGCACGGTCAAAATATTTT+GGG | - | chr3_1:56558430-56558449 | Msa0363910:CDS | 30.0% |
| AAATAAGGAAAAAATCCGCA+AGG | + | chr3_1:56558594-56558613 | None:intergenic | 30.0% | |
| TATAACCTACTTGTCTAATG+TGG | - | chr3_1:56558658-56558677 | Msa0363910:intron | 30.0% | |
| ATATTCCACATTAGACAAGT+AGG | + | chr3_1:56558666-56558685 | None:intergenic | 30.0% | |
| TGCAAGTAATGGCTAAATAA+CGG | - | chr3_1:56558771-56558790 | Msa0363910:intron | 30.0% | |
| AGGAAAGGACATAAAAAAAG+GGG | + | chr3_1:56558817-56558836 | None:intergenic | 30.0% | |
| TAATGAATTTGTATGATCGC+TGG | - | chr3_1:56558996-56559015 | Msa0363910:intron | 30.0% | |
| TGATGTTAAAACGAAAACCA+AGG | + | chr3_1:56559029-56559048 | None:intergenic | 30.0% | |
| !! | GTTTTAACATCATAGTGATG+AGG | - | chr3_1:56559037-56559056 | Msa0363910:intron | 30.0% |
| TATATCGCAACTAACTTTGT+GGG | + | chr3_1:56559141-56559160 | None:intergenic | 30.0% | |
| ! | TAGTTATTTCAAAAGTGGTG+CGG | + | chr3_1:56559227-56559246 | None:intergenic | 30.0% |
| TTTGAAAACTGGTTATTTGC+AGG | + | chr3_1:56559285-56559304 | None:intergenic | 30.0% | |
| !!! | ATAGCCCTTTTTTTGAAAAC+TGG | + | chr3_1:56559296-56559315 | None:intergenic | 30.0% |
| ! | ATTTGTCTATTTGCTAGCAA+TGG | - | chr3_1:56559760-56559779 | Msa0363910:intron | 30.0% |
| !!! | AATGGATACGATTTTGAGTT+TGG | - | chr3_1:56559778-56559797 | Msa0363910:intron | 30.0% |
| AATATGCTCAAAGAATGCAT+TGG | - | chr3_1:56559964-56559983 | Msa0363910:intron | 30.0% | |
| ATATGCTCAAAGAATGCATT+GGG | - | chr3_1:56559965-56559984 | Msa0363910:intron | 30.0% | |
| AACAGAAACATGTTTGACAA+TGG | + | chr3_1:56560230-56560249 | None:intergenic | 30.0% | |
| TATACAAACAAGAGTGGAAA+AGG | + | chr3_1:56560265-56560284 | None:intergenic | 30.0% | |
| !! | AAACACAACAATTTGGGTTT+TGG | + | chr3_1:56560294-56560313 | None:intergenic | 30.0% |
| AATTGATGAAACAATACAGG+AGG | - | chr3_1:56560916-56560935 | Msa0363910:intron | 30.0% | |
| ATGACATAAAGGAGATAAGA+TGG | - | chr3_1:56560960-56560979 | Msa0363910:intron | 30.0% | |
| ! | GCTTCATTTTCGGAAATAAT+AGG | + | chr3_1:56560988-56561007 | None:intergenic | 30.0% |
| AGGTCAACATATGATATGTT+GGG | + | chr3_1:56561063-56561082 | None:intergenic | 30.0% | |
| AAGGTCAACATATGATATGT+TGG | + | chr3_1:56561064-56561083 | None:intergenic | 30.0% | |
| AAGTTTAACAAAGAGCTCTA+CGG | + | chr3_1:56561168-56561187 | Msa0363920:CDS | 30.0% | |
| GTTAAACTTAATTTACACCC+TGG | - | chr3_1:56561179-56561198 | Msa0363910:CDS | 30.0% | |
| AGTCGGATAGAATTGTAGAT+CGG | + | chr3_1:56558231-56558250 | None:intergenic | 35.0% | |
| ! | TGCACGGTCAAAATATTTTG+GGG | - | chr3_1:56558431-56558450 | Msa0363910:CDS | 35.0% |
| AAATTGTGCCAAAAGCTTCT+TGG | - | chr3_1:56558744-56558763 | Msa0363910:intron | 35.0% | |
| AATTGTGCCAAAAGCTTCTT+GGG | - | chr3_1:56558745-56558764 | Msa0363910:intron | 35.0% | |
| TTCTTGGGAAATGCAAGTAA+TGG | - | chr3_1:56558760-56558779 | Msa0363910:intron | 35.0% | |
| GTATATCGCAACTAACTTTG+TGG | + | chr3_1:56559142-56559161 | None:intergenic | 35.0% | |
| ATACAATCTGTGTTCGCATT+GGG | + | chr3_1:56559164-56559183 | None:intergenic | 35.0% | |
| AATACAATCTGTGTTCGCAT+TGG | + | chr3_1:56559165-56559184 | None:intergenic | 35.0% | |
| CGAACACAGATTGTATTTGT+TGG | - | chr3_1:56559168-56559187 | Msa0363910:CDS | 35.0% | |
| ! | GGTGTTGAATACAAAAAGAG+TGG | + | chr3_1:56559257-56559276 | None:intergenic | 35.0% |
| ACTGGTTATTTGCAGGTTAT+TGG | + | chr3_1:56559278-56559297 | None:intergenic | 35.0% | |
| ! | GTAGTCTAATGCTCTGTTTT+AGG | - | chr3_1:56559507-56559526 | Msa0363910:intron | 35.0% |
| GAAGAAGCAATTGTAATGCA+AGG | - | chr3_1:56559808-56559827 | Msa0363910:intron | 35.0% | |
| AATGATGAAGCATAAGCATG+TGG | - | chr3_1:56559836-56559855 | Msa0363910:intron | 35.0% | |
| ATGATGAAGCATAAGCATGT+GGG | - | chr3_1:56559837-56559856 | Msa0363910:intron | 35.0% | |
| AAAGAGGTAATAGACAGAAG+AGG | + | chr3_1:56559867-56559886 | None:intergenic | 35.0% | |
| ! | TCATTTTCAGCTATGGTGTA+CGG | - | chr3_1:56560182-56560201 | Msa0363910:intron | 35.0% |
| ATAGCGTTCAAAGCAGAAAT+TGG | + | chr3_1:56560440-56560459 | None:intergenic | 35.0% | |
| ! | TCTGCTTTGAACGCTATTAT+CGG | - | chr3_1:56560443-56560462 | Msa0363910:intron | 35.0% |
| AATAAAATTTGTCACGGGCA+CGG | + | chr3_1:56560581-56560600 | None:intergenic | 35.0% | |
| CGACGAATAAAATTTGTCAC+GGG | + | chr3_1:56560586-56560605 | None:intergenic | 35.0% | |
| CCGACGAATAAAATTTGTCA+CGG | + | chr3_1:56560587-56560606 | None:intergenic | 35.0% | |
| ! | CCGTGACAAATTTTATTCGT+CGG | - | chr3_1:56560584-56560603 | Msa0363910:intron | 35.0% |
| CCCTCAACATTTGATATATG+CGG | + | chr3_1:56560667-56560686 | None:intergenic | 35.0% | |
| CCGCATATATCAAATGTTGA+GGG | - | chr3_1:56560664-56560683 | Msa0363910:CDS | 35.0% | |
| GAGAATGAAGGATGACATAA+AGG | - | chr3_1:56560949-56560968 | Msa0363910:intron | 35.0% | |
| ! | AGGAAGATCTGCTTCATTTT+CGG | + | chr3_1:56560998-56561017 | None:intergenic | 35.0% |
| GATCAACTCCTACATAATCA+AGG | - | chr3_1:56561025-56561044 | Msa0363910:intron | 35.0% | |
| CAACATATGATATGTTGGGT+GGG | + | chr3_1:56561059-56561078 | None:intergenic | 35.0% | |
| TCAACATATGATATGTTGGG+TGG | + | chr3_1:56561060-56561079 | None:intergenic | 35.0% | |
| TTCTTGGGATGATCCATTTC+CGG | - | chr3_1:56558286-56558305 | Msa0363910:intron | 40.0% | |
| !! | GCACGGTCAAAATATTTTGG+GGG | - | chr3_1:56558432-56558451 | Msa0363910:CDS | 40.0% |
| ! | TTTTCATGTTGCAGGGATGT+AGG | - | chr3_1:56558715-56558734 | Msa0363910:intron | 40.0% |
| ! | TGCATTTCCCAAGAAGCTTT+TGG | + | chr3_1:56558755-56558774 | None:intergenic | 40.0% |
| AAGAGGGGATTACATAGGAA+AGG | + | chr3_1:56558832-56558851 | None:intergenic | 40.0% | |
| CCAAAAAGAGGGGATTACAT+AGG | + | chr3_1:56558837-56558856 | None:intergenic | 40.0% | |
| ! | CCTATGTAATCCCCTCTTTT+TGG | - | chr3_1:56558834-56558853 | Msa0363910:intron | 40.0% |
| TGAAATCTACACATAGCTGC+AGG | - | chr3_1:56559071-56559090 | Msa0363910:intron | 40.0% | |
| !!! | TTGGGATTTTTTCCCTCTCT+CGG | - | chr3_1:56559983-56560002 | Msa0363910:intron | 40.0% |
| !!! | ATTTTTTCCCTCTCTCGGAT+TGG | - | chr3_1:56559988-56560007 | Msa0363910:intron | 40.0% |
| AAACAATCCAATCCGAGAGA+GGG | + | chr3_1:56559998-56560017 | None:intergenic | 40.0% | |
| AAAACAATCCAATCCGAGAG+AGG | + | chr3_1:56559999-56560018 | None:intergenic | 40.0% | |
| ! | CATTTTCAGCTATGGTGTAC+GGG | - | chr3_1:56560183-56560202 | Msa0363910:intron | 40.0% |
| TTGACAATGGCTTGAAGTTC+CGG | + | chr3_1:56560217-56560236 | None:intergenic | 40.0% | |
| ! | ACATGTTTCTGTTGCATCCA+TGG | - | chr3_1:56560237-56560256 | Msa0363910:intron | 40.0% |
| ! | CTGCTTTGAACGCTATTATC+GGG | - | chr3_1:56560444-56560463 | Msa0363910:intron | 40.0% |
| TTGAACGCTATTATCGGGTA+TGG | - | chr3_1:56560449-56560468 | Msa0363910:intron | 40.0% | |
| TGAACGCTATTATCGGGTAT+GGG | - | chr3_1:56560450-56560469 | Msa0363910:intron | 40.0% | |
| ATAAAATTTGTCACGGGCAC+GGG | + | chr3_1:56560580-56560599 | None:intergenic | 40.0% | |
| CCAGGGATGGCAAAAAAAAA+CGG | + | chr3_1:56560622-56560641 | None:intergenic | 40.0% | |
| GCCGCATATATCAAATGTTG+AGG | - | chr3_1:56560663-56560682 | Msa0363910:CDS | 40.0% | |
| ATGAAGCAGATCTTCCTGTT+TGG | - | chr3_1:56561001-56561020 | Msa0363910:intron | 40.0% | |
| AGCTCTACGGAATTGGAATT+TGG | + | chr3_1:56561155-56561174 | Msa0363920:CDS | 40.0% | |
| AACAAAGAGCTCTACGGAAT+TGG | + | chr3_1:56561162-56561181 | Msa0363920:CDS | 40.0% | |
| GAATTGTAGATCGGACAGAG+AGG | + | chr3_1:56558222-56558241 | None:intergenic | 45.0% | |
| GAGTCTCGACAGCAACTTAA+TGG | + | chr3_1:56558266-56558285 | None:intergenic | 45.0% | |
| TTGCTGTCGAGACTCTTCTT+GGG | - | chr3_1:56558271-56558290 | Msa0363910:intron | 45.0% | |
| TCGACATCTGAGCAAGTCAT+CGG | - | chr3_1:56558382-56558401 | Msa0363910:CDS | 45.0% | |
| !! | TGATCGCTGGTTTAAAGCCT+TGG | - | chr3_1:56559009-56559028 | Msa0363910:intron | 45.0% |
| !! | TGGCTTTGTGTGACTCTTGT+TGG | - | chr3_1:56559188-56559207 | Msa0363910:CDS | 45.0% |
| ! | GTTTTATCTGAGCTCTCTGC+TGG | - | chr3_1:56559624-56559643 | Msa0363910:intron | 45.0% |
| CAGATACGTGACACTGATGA+CGG | + | chr3_1:56559673-56559692 | None:intergenic | 45.0% | |
| !! | CAAGAGTGGAAAAGGTACCA+TGG | + | chr3_1:56560257-56560276 | None:intergenic | 45.0% |
| TAAAATTTGTCACGGGCACG+GGG | + | chr3_1:56560579-56560598 | None:intergenic | 45.0% | |
| CAAAAAAAAACGGTGCACGC+TGG | + | chr3_1:56560612-56560631 | None:intergenic | 45.0% | |
| !!! | CCGTTTTTTTTTGCCATCCC+TGG | - | chr3_1:56560619-56560638 | Msa0363910:intron | 45.0% |
| ! | ACTTTTCTTTGGACCAGGGA+TGG | + | chr3_1:56560635-56560654 | None:intergenic | 45.0% |
| ! | CGCAACTTTTCTTTGGACCA+GGG | + | chr3_1:56560639-56560658 | None:intergenic | 45.0% |
| GGTCGTGTTGAAGAGAATGA+AGG | - | chr3_1:56560937-56560956 | Msa0363910:intron | 45.0% | |
| ! | GTAGGAGTTGATCTCCAAAC+AGG | + | chr3_1:56561018-56561037 | None:intergenic | 45.0% |
| TTGTAGATCGGACAGAGAGG+AGG | + | chr3_1:56558219-56558238 | None:intergenic | 50.0% | |
| GTTGCTGTCGAGACTCTTCT+TGG | - | chr3_1:56558270-56558289 | Msa0363910:intron | 50.0% | |
| ATCGGAGATCCAGTACTCGA+CGG | + | chr3_1:56558326-56558345 | None:intergenic | 50.0% | |
| !! | GCGCTAGAAGTCGTTTTGCA+CGG | - | chr3_1:56558415-56558434 | Msa0363910:CDS | 50.0% |
| TCATGTTGCAGGGATGTAGG+TGG | - | chr3_1:56558718-56558737 | Msa0363910:intron | 50.0% | |
| ! | CATAGTGATGAGGCGTCTCA+TGG | - | chr3_1:56559047-56559066 | Msa0363910:intron | 50.0% |
| ! | TGGTGTACGGGTTACATCTC+CGG | - | chr3_1:56560195-56560214 | Msa0363910:intron | 50.0% |
| ! | GCGCAACTTTTCTTTGGACC+AGG | + | chr3_1:56560640-56560659 | None:intergenic | 50.0% |
| TCGGACAGAGAGGAGGAAGA+TGG | + | chr3_1:56558212-56558231 | None:intergenic | 55.0% | |
| TCCAGTACTCGACGGATGCT+CGG | + | chr3_1:56558318-56558337 | None:intergenic | 55.0% | |
| !! | GCTGCAGGCTGTTTTCGTGA+TGG | - | chr3_1:56559086-56559105 | Msa0363910:intron | 55.0% |
| TTATCGGGTATGGGTACCCG+CGG | - | chr3_1:56560459-56560478 | Msa0363910:intron | 55.0% | |
| TTTGCTGATACCCGTTCCCG+CGG | + | chr3_1:56560479-56560498 | None:intergenic | 55.0% | |
| ! | GGCTGCGCGCAACTTTTCTT+TGG | + | chr3_1:56560646-56560665 | None:intergenic | 55.0% |
| AGTACTCGACGGATGCTCGG+AGG | + | chr3_1:56558315-56558334 | None:intergenic | 60.0% | |
| TCCGAGCATCCGTCGAGTAC+TGG | - | chr3_1:56558314-56558333 | Msa0363910:intron | 60.0% | |
| TATCGGGTATGGGTACCCGC+GGG | - | chr3_1:56560460-56560479 | Msa0363910:intron | 60.0% | |
| TTGCTGATACCCGTTCCCGC+GGG | + | chr3_1:56560478-56560497 | None:intergenic | 60.0% | |
| ! | GCACGGGGCTGGTAGCTAAA+CGG | + | chr3_1:56560564-56560583 | None:intergenic | 60.0% |
| TGCTCGGAGGTCGCCGGAAA+TGG | + | chr3_1:56558302-56558321 | None:intergenic | 65.0% | |
| GGTATGGGTACCCGCGGGAA+CGG | - | chr3_1:56560465-56560484 | Msa0363910:intron | 65.0% | |
| GTATGGGTACCCGCGGGAAC+GGG | - | chr3_1:56560466-56560485 | Msa0363910:intron | 65.0% | |
| ATTTGTCACGGGCACGGGGC+TGG | + | chr3_1:56560575-56560594 | None:intergenic | 65.0% | |
| GACGGATGCTCGGAGGTCGC+CGG | + | chr3_1:56558308-56558327 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56558200 | 56561214 | 56558200 | ID=Msa0363910;Name=Msa0363910 |
| chr3_1 | mRNA | 56558200 | 56561214 | 56558200 | ID=Msa0363910-mRNA-1;Parent=Msa0363910;Name=Msa0363910-mRNA-1;_AED=0.45;_eAED=0.64;_QI=0|0.25|0.4|1|1|1|5|0|158 |
| chr3_1 | exon | 56561053 | 56561214 | 56561053 | ID=Msa0363910-mRNA-1:exon:10515;Parent=Msa0363910-mRNA-1 |
| chr3_1 | exon | 56560639 | 56560685 | 56560639 | ID=Msa0363910-mRNA-1:exon:10514;Parent=Msa0363910-mRNA-1 |
| chr3_1 | exon | 56559156 | 56559222 | 56559156 | ID=Msa0363910-mRNA-1:exon:10513;Parent=Msa0363910-mRNA-1 |
| chr3_1 | exon | 56558368 | 56558479 | 56558368 | ID=Msa0363910-mRNA-1:exon:10512;Parent=Msa0363910-mRNA-1 |
| chr3_1 | exon | 56558200 | 56558288 | 56558200 | ID=Msa0363910-mRNA-1:exon:10511;Parent=Msa0363910-mRNA-1 |
| chr3_1 | CDS | 56561053 | 56561214 | 56561053 | ID=Msa0363910-mRNA-1:cds;Parent=Msa0363910-mRNA-1 |
| chr3_1 | CDS | 56560639 | 56560685 | 56560639 | ID=Msa0363910-mRNA-1:cds;Parent=Msa0363910-mRNA-1 |
| chr3_1 | CDS | 56559156 | 56559222 | 56559156 | ID=Msa0363910-mRNA-1:cds;Parent=Msa0363910-mRNA-1 |
| chr3_1 | CDS | 56558368 | 56558479 | 56558368 | ID=Msa0363910-mRNA-1:cds;Parent=Msa0363910-mRNA-1 |
| chr3_1 | CDS | 56558200 | 56558288 | 56558200 | ID=Msa0363910-mRNA-1:cds;Parent=Msa0363910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
