Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233810 | KEH35146.1 | 90.909 | 88 | 8 | 0 | 71 | 158 | 9 | 96 | 1.36e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233810 | A0A072V0B1 | 90.909 | 88 | 8 | 0 | 71 | 158 | 9 | 96 | 6.48e-49 | 162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077610 | Msa0233810 | 0.880232 | 6.501741e-70 | -8.615850e-47 |
| Msa0077670 | Msa0233810 | 0.878182 | 3.454952e-69 | -8.615850e-47 |
| Msa0157310 | Msa0233810 | 0.868122 | 8.253297e-66 | -8.615850e-47 |
| Msa0233810 | Msa0239800 | 0.801378 | 9.263295e-49 | -8.615850e-47 |
| Msa0233810 | Msa0257500 | 0.814108 | 1.822271e-51 | -8.615850e-47 |
| Msa0233810 | Msa0265380 | 0.812724 | 3.671298e-51 | -8.615850e-47 |
| Msa0233810 | Msa0303360 | 0.812170 | 4.851830e-51 | -8.615850e-47 |
| Msa0233810 | Msa0317510 | 0.800324 | 1.520155e-48 | -8.615850e-47 |
| Msa0233810 | Msa0363910 | 0.833352 | 5.601520e-56 | -8.615850e-47 |
| Msa0233810 | Msa0707310 | 0.812681 | 3.751218e-51 | -8.615850e-47 |
| Msa0233810 | Msa1173470 | 0.806831 | 6.795667e-50 | -8.615850e-47 |
| Msa0233810 | Msa1426270 | 0.801013 | 1.099805e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCTATTATTTCCGAAAA+TGG | 0.182555 | 2_2:-6205351 | Msa0233810:CDS |
| TTCTTGGGATGATCCATTTC+CGG | 0.229145 | 2_2:-6208047 | Msa0233810:CDS |
| GAGTCTCGAAAGCAACTTAA+TGG | 0.235558 | 2_2:+6208070 | None:intergenic |
| AGCTCTACGGAATTGGAATT+TGG | 0.247116 | 2_2:+6205181 | None:intergenic |
| TTGACAATGGCTTGAAGTTC+CGG | 0.315301 | 2_2:+6206119 | None:intergenic |
| AACAAAGAGCTCTACGGAAT+TGG | 0.327073 | 2_2:+6205174 | None:intergenic |
| AAATTGTGCCAAAAGCTTCT+TGG | 0.335598 | 2_2:-6207589 | Msa0233810:CDS |
| AATTGTGCCAAAAGCTTCTT+GGG | 0.341672 | 2_2:-6207588 | Msa0233810:CDS |
| TGCATTTCCCAAGAAGCTTT+TGG | 0.342440 | 2_2:+6207581 | None:intergenic |
| GAGAATGAAGGATGACATAA+AGG | 0.345215 | 2_2:-6205384 | Msa0233810:CDS |
| TGCTCGGAGGTCGCCGGAAA+TGG | 0.366381 | 2_2:+6208034 | None:intergenic |
| GTTGCTTTCGAGACTCTTCT+TGG | 0.371229 | 2_2:-6208063 | Msa0233810:CDS |
| ATGGAGCAGATCTTCCTGTT+TGG | 0.427177 | 2_2:-6205332 | Msa0233810:CDS |
| TCCGAGCATCCGTCGAGTAC+TGG | 0.429654 | 2_2:-6208019 | Msa0233810:CDS |
| TTGCTTTCGAGACTCTTCTT+GGG | 0.468657 | 2_2:-6208062 | Msa0233810:CDS |
| ACATGTTTCTGTTGCATCCA+TGG | 0.469525 | 2_2:-6206096 | Msa0233810:intron |
| TGGTGTACGGGTTACATCTC+CGG | 0.477444 | 2_2:-6206138 | Msa0233810:CDS |
| TATGATTACCTTGATTATGT+AGG | 0.491010 | 2_2:+6205300 | None:intergenic |
| GTAGGAGTTGATCTCCAAAC+AGG | 0.497937 | 2_2:+6205318 | None:intergenic |
| TCCAGTACTCGACGGATGCT+CGG | 0.515552 | 2_2:+6208018 | None:intergenic |
| ATGACATAAAGGAGATAAGA+TGG | 0.525273 | 2_2:-6205373 | Msa0233810:CDS |
| GACGGATGCTCGGAGGTCGC+CGG | 0.537445 | 2_2:+6208028 | None:intergenic |
| GATCAACTCCTACATAATCA+AGG | 0.538359 | 2_2:-6205308 | Msa0233810:intron |
| TCGGACAGAGAGGAGGAAGA+TGG | 0.550968 | 2_2:+6208124 | None:intergenic |
| GGTCGTGTTGAAGAGAATGA+AGG | 0.558124 | 2_2:-6205396 | Msa0233810:CDS |
| AAGTTTAACAAAGAGCTCTA+CGG | 0.566049 | 2_2:+6205168 | None:intergenic |
| TCATGTTGCAGGGATGTAGG+TGG | 0.572168 | 2_2:-6207615 | Msa0233810:intron |
| GTTAAACTTAATTTACACCC+TGG | 0.604232 | 2_2:-6205154 | Msa0233810:CDS |
| TTGTAGATCGGACAGAGAGG+AGG | 0.610463 | 2_2:+6208117 | None:intergenic |
| AACAGAAACATGTTTGACAA+TGG | 0.625197 | 2_2:+6206106 | None:intergenic |
| AGTCGGATAGAATTGTAGAT+CGG | 0.627874 | 2_2:+6208105 | None:intergenic |
| GAATTGTAGATCGGACAGAG+AGG | 0.640211 | 2_2:+6208114 | None:intergenic |
| ATCGGAGATCCAGTACTCGA+CGG | 0.647965 | 2_2:+6208010 | None:intergenic |
| AGTACTCGACGGATGCTCGG+AGG | 0.722695 | 2_2:+6208021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAAAATCCAATATA+CGG | + | chr2_2:6205304-6205323 | None:intergenic | 10.0% |
| !! | GAATAAAATAAAAAGAAATA+AGG | + | chr2_2:6205550-6205569 | None:intergenic | 10.0% |
| !!! | CTGTATATTATATTTTTTTA+AGG | - | chr2_2:6205569-6205588 | Msa0233810:intron | 10.0% |
| !!! | ATTTGAAAATCTATTTTAAA+GGG | + | chr2_2:6206394-6206413 | None:intergenic | 10.0% |
| !!! | TTTTAGGAAATTTTTATATT+CGG | - | chr2_2:6207256-6207275 | Msa0233810:intron | 10.0% |
| !!! | CACATTTTTTATGTTAAAAA+AGG | + | chr2_2:6205873-6205892 | None:intergenic | 15.0% |
| !!! | GATTTGAAAATCTATTTTAA+AGG | + | chr2_2:6206395-6206414 | None:intergenic | 15.0% |
| !! | TTAGAAGAAAAAAAATAAAG+AGG | + | chr2_2:6206824-6206843 | None:intergenic | 15.0% |
| !! | TAAAAAAAACACAACAATTT+GGG | + | chr2_2:6207241-6207260 | None:intergenic | 15.0% |
| !! | CAGTTTATAACTAATTTATT+CGG | + | chr2_2:6207358-6207377 | None:intergenic | 15.0% |
| !! | TCATAAAAAAAACCGTATAT+TGG | - | chr2_2:6205289-6205308 | Msa0233810:intron | 20.0% |
| !!! | TTTATTTTTTTTCATGTTGC+AGG | - | chr2_2:6205648-6205667 | Msa0233810:intron | 20.0% |
| !!! | TTATTTTTTTTCATGTTGCA+GGG | - | chr2_2:6205649-6205668 | Msa0233810:intron | 20.0% |
| !!! | TTTCTTTTTAACCAAAAAGA+GGG | + | chr2_2:6205789-6205808 | None:intergenic | 20.0% |
| !!! | AAAAAAGGTTTTGATATTAC+AGG | - | chr2_2:6205840-6205859 | Msa0233810:intron | 20.0% |
| !!! | ATAAGTAGTTATTTCAAAAG+TGG | + | chr2_2:6206173-6206192 | None:intergenic | 20.0% |
| !!! | AATAACCAGTTTTCAAAAAA+AGG | - | chr2_2:6206229-6206248 | Msa0233810:intron | 20.0% |
| !!! | ATAACCAGTTTTCAAAAAAA+GGG | - | chr2_2:6206230-6206249 | Msa0233810:intron | 20.0% |
| !! | AATCTTCATAAAGAAAATCA+AGG | - | chr2_2:6206332-6206351 | Msa0233810:intron | 20.0% |
| !!! | AAACATAGCATTTAAAACAA+GGG | + | chr2_2:6206422-6206441 | None:intergenic | 20.0% |
| !!! | TAAACATAGCATTTAAAACA+AGG | + | chr2_2:6206423-6206442 | None:intergenic | 20.0% |
| !! | ATATGTTAAAATATAGTAGC+TGG | - | chr2_2:6206507-6206526 | Msa0233810:intron | 20.0% |
| !! | AAAAGATTTAAAAACGCAAA+AGG | - | chr2_2:6206868-6206887 | Msa0233810:intron | 20.0% |
| !!! | AGTTTTCTTAAGTTATTCAT+AGG | + | chr2_2:6207012-6207031 | None:intergenic | 20.0% |
| !!! | TTTATTTTCATTTTCAGCTA+TGG | - | chr2_2:6207116-6207135 | Msa0233810:intron | 20.0% |
| !! | CTAAAAAAAACACAACAATT+TGG | + | chr2_2:6207242-6207261 | None:intergenic | 20.0% |
| !!! | CAAATTGTTGTGTTTTTTTT+AGG | - | chr2_2:6207240-6207259 | Msa0233810:intron | 20.0% |
| !! | TGTCTGTATCTATAAAATAA+TGG | - | chr2_2:6207444-6207463 | Msa0233810:intron | 20.0% |
| !! | GTCTGTATCTATAAAATAAT+GGG | - | chr2_2:6207445-6207464 | Msa0233810:intron | 20.0% |
| !!! | AAAATTTGAGTATTTTGCTT+TGG | + | chr2_2:6207785-6207804 | None:intergenic | 20.0% |
| !! | ACAATAACATTCAATAGAAT+TGG | + | chr2_2:6208032-6208051 | None:intergenic | 20.0% |
| !!! | ACGGTTTTTTTTATGAGAAT+CGG | + | chr2_2:6205285-6205304 | None:intergenic | 25.0% |
| ! | ACAAAATCAAACTACGATTA+TGG | + | chr2_2:6205410-6205429 | None:intergenic | 25.0% |
| ! | AGTTAGTATTTATTTCCTTG+CGG | - | chr2_2:6205517-6205536 | Msa0233810:intron | 25.0% |
| ! | AGGAAAGGACATAAAAAAAA+GGG | + | chr2_2:6205758-6205777 | None:intergenic | 25.0% |
| ! | TAGGAAAGGACATAAAAAAA+AGG | + | chr2_2:6205759-6205778 | None:intergenic | 25.0% |
| !! | TTCTTTTTAACCAAAAAGAG+GGG | + | chr2_2:6205788-6205807 | None:intergenic | 25.0% |
| !! | CTTTCTTTTTAACCAAAAAG+AGG | + | chr2_2:6205790-6205809 | None:intergenic | 25.0% |
| !!! | CTTTTTGGTTAAAAAGAAAG+CGG | - | chr2_2:6205790-6205809 | Msa0233810:intron | 25.0% |
| ! | ACTGATCTTGTATAGAAAAA+AGG | - | chr2_2:6205825-6205844 | Msa0233810:intron | 25.0% |
| !!! | TTTTCGTGATGGAAAATAAA+TGG | - | chr2_2:6206038-6206057 | Msa0233810:intron | 25.0% |
| !! | AACATAGCATTTAAAACAAG+GGG | + | chr2_2:6206421-6206440 | None:intergenic | 25.0% |
| ! | AGCTCAGATAAAACAATATA+CGG | + | chr2_2:6206559-6206578 | None:intergenic | 25.0% |
| !!! | TATAGATCAAGGTTGATAAA+GGG | + | chr2_2:6206642-6206661 | None:intergenic | 25.0% |
| !!! | TTATAGATCAAGGTTGATAA+AGG | + | chr2_2:6206643-6206662 | None:intergenic | 25.0% |
| ! | CAATGATGAATTATAGATCA+AGG | + | chr2_2:6206653-6206672 | None:intergenic | 25.0% |
| !!! | TAAATCTTTTTTGCAAGAGT+TGG | + | chr2_2:6206858-6206877 | None:intergenic | 25.0% |
| ! | TTTAAAAACGCAAAAGGTAA+TGG | - | chr2_2:6206874-6206893 | Msa0233810:intron | 25.0% |
| ! | ATAAATGTCATCTTTACATG+AGG | + | chr2_2:6207101-6207120 | None:intergenic | 25.0% |
| ! | TTTCTATATACAAACAAGAG+TGG | + | chr2_2:6207212-6207231 | None:intergenic | 25.0% |
| ! | ATACCTATTTATTATACACG+TGG | - | chr2_2:6207475-6207494 | Msa0233810:intron | 25.0% |
| ! | TATCCACGTGTATAATAAAT+AGG | + | chr2_2:6207481-6207500 | None:intergenic | 25.0% |
| ! | GAAAATTGATGAAACAATAC+AGG | - | chr2_2:6207854-6207873 | Msa0233810:intron | 25.0% |
| ! | TATGATTACCTTGATTATGT+AGG | + | chr2_2:6207977-6207996 | None:intergenic | 25.0% |
| ! | ATTCAATAGAATTGGACAAA+AGG | + | chr2_2:6208024-6208043 | None:intergenic | 25.0% |
| AATGGTTTCGAAAAATGAGT+CGG | + | chr2_2:6205189-6205208 | None:intergenic | 30.0% | |
| ! | TTTGCACGGTCAAAATATTT+TGG | - | chr2_2:6205370-6205389 | Msa0233810:CDS | 30.0% |
| ! | TTGCACGGTCAAAATATTTT+GGG | - | chr2_2:6205371-6205390 | Msa0233810:CDS | 30.0% |
| AAATAAGGAAAAAATCCGCA+AGG | + | chr2_2:6205535-6205554 | None:intergenic | 30.0% | |
| ATATTCCACATTAGACAAGT+AGG | + | chr2_2:6205607-6205626 | None:intergenic | 30.0% | |
| TGCAAGTAATGGCTAAATAA+CGG | - | chr2_2:6205712-6205731 | Msa0233810:intron | 30.0% | |
| TAATGAATTTGTATGATCGC+TGG | - | chr2_2:6205937-6205956 | Msa0233810:intron | 30.0% | |
| TGATGTTAAAACGAAAACCA+AGG | + | chr2_2:6205970-6205989 | None:intergenic | 30.0% | |
| !! | GTTTTAACATCATAGTGATG+AGG | - | chr2_2:6205978-6205997 | Msa0233810:intron | 30.0% |
| TATATCGCAACTAACTTTGT+GGG | + | chr2_2:6206082-6206101 | None:intergenic | 30.0% | |
| ! | TAGTTATTTCAAAAGTGGTG+CGG | + | chr2_2:6206168-6206187 | None:intergenic | 30.0% |
| TTTGAAAACTGGTTATTTGC+AGG | + | chr2_2:6206226-6206245 | None:intergenic | 30.0% | |
| !!! | ATAGCCCTTTTTTTGAAAAC+TGG | + | chr2_2:6206237-6206256 | None:intergenic | 30.0% |
| ! | ATTTGTCTATTTGCTAGCAA+TGG | - | chr2_2:6206701-6206720 | Msa0233810:intron | 30.0% |
| !!! | AATGGATACGATTTTGAGTT+TGG | - | chr2_2:6206719-6206738 | Msa0233810:intron | 30.0% |
| AATATGCTCAAAGAATGCAT+TGG | - | chr2_2:6206905-6206924 | Msa0233810:intron | 30.0% | |
| ATATGCTCAAAGAATGCATT+GGG | - | chr2_2:6206906-6206925 | Msa0233810:intron | 30.0% | |
| AACAGAAACATGTTTGACAA+TGG | + | chr2_2:6207171-6207190 | None:intergenic | 30.0% | |
| TATACAAACAAGAGTGGAAA+AGG | + | chr2_2:6207206-6207225 | None:intergenic | 30.0% | |
| !! | AAACACAACAATTTGGGTTT+TGG | + | chr2_2:6207235-6207254 | None:intergenic | 30.0% |
| AATTGATGAAACAATACAGG+AGG | - | chr2_2:6207857-6207876 | Msa0233810:intron | 30.0% | |
| ATGACATAAAGGAGATAAGA+TGG | - | chr2_2:6207901-6207920 | Msa0233810:intron | 30.0% | |
| AGGTCAACATATGATATGTT+GGG | + | chr2_2:6208004-6208023 | None:intergenic | 30.0% | |
| AAGGTCAACATATGATATGT+TGG | + | chr2_2:6208005-6208024 | None:intergenic | 30.0% | |
| AAGTTTAACAAAGAGCTCTA+CGG | + | chr2_2:6208109-6208128 | None:intergenic | 30.0% | |
| GTTAAACTTAATTTACACCC+TGG | - | chr2_2:6208120-6208139 | Msa0233810:CDS | 30.0% | |
| AGTCGGATAGAATTGTAGAT+CGG | + | chr2_2:6205172-6205191 | None:intergenic | 35.0% | |
| ! | TGCACGGTCAAAATATTTTG+GGG | - | chr2_2:6205372-6205391 | Msa0233810:CDS | 35.0% |
| CATAACCTACTTGTCTAATG+TGG | - | chr2_2:6205599-6205618 | Msa0233810:intron | 35.0% | |
| AAATTGTGCCAAAAGCTTCT+TGG | - | chr2_2:6205685-6205704 | Msa0233810:intron | 35.0% | |
| AATTGTGCCAAAAGCTTCTT+GGG | - | chr2_2:6205686-6205705 | Msa0233810:intron | 35.0% | |
| TTCTTGGGAAATGCAAGTAA+TGG | - | chr2_2:6205701-6205720 | Msa0233810:intron | 35.0% | |
| GTATATCGCAACTAACTTTG+TGG | + | chr2_2:6206083-6206102 | None:intergenic | 35.0% | |
| ATACAATCTGTGTTCGCATT+GGG | + | chr2_2:6206105-6206124 | None:intergenic | 35.0% | |
| AATACAATCTGTGTTCGCAT+TGG | + | chr2_2:6206106-6206125 | None:intergenic | 35.0% | |
| CGAACACAGATTGTATTTGT+TGG | - | chr2_2:6206109-6206128 | Msa0233810:CDS | 35.0% | |
| ! | GGTGTTGAATACAAAAAGAG+TGG | + | chr2_2:6206198-6206217 | None:intergenic | 35.0% |
| ACTGGTTATTTGCAGGTTAT+TGG | + | chr2_2:6206219-6206238 | None:intergenic | 35.0% | |
| ! | GTAGTCTAATGCTCTGTTTT+AGG | - | chr2_2:6206448-6206467 | Msa0233810:intron | 35.0% |
| GAAGAAGCAATTGTAATGCA+AGG | - | chr2_2:6206749-6206768 | Msa0233810:intron | 35.0% | |
| AATGATGAAGCATAAGCATG+TGG | - | chr2_2:6206777-6206796 | Msa0233810:intron | 35.0% | |
| ATGATGAAGCATAAGCATGT+GGG | - | chr2_2:6206778-6206797 | Msa0233810:intron | 35.0% | |
| AAAGAGGTAATAGACAGAAG+AGG | + | chr2_2:6206808-6206827 | None:intergenic | 35.0% | |
| ! | TCATTTTCAGCTATGGTGTA+CGG | - | chr2_2:6207123-6207142 | Msa0233810:intron | 35.0% |
| ATAGCGTTCAAAGCAGAAAT+TGG | + | chr2_2:6207381-6207400 | None:intergenic | 35.0% | |
| ! | TCTGCTTTGAACGCTATTAT+CGG | - | chr2_2:6207384-6207403 | Msa0233810:intron | 35.0% |
| AATAAAATTTGTCACGGGCA+CGG | + | chr2_2:6207522-6207541 | None:intergenic | 35.0% | |
| CGACGAATAAAATTTGTCAC+GGG | + | chr2_2:6207527-6207546 | None:intergenic | 35.0% | |
| CCGACGAATAAAATTTGTCA+CGG | + | chr2_2:6207528-6207547 | None:intergenic | 35.0% | |
| ! | CCGTGACAAATTTTATTCGT+CGG | - | chr2_2:6207525-6207544 | Msa0233810:intron | 35.0% |
| CCCTCAACATTTGATATATG+CGG | + | chr2_2:6207608-6207627 | None:intergenic | 35.0% | |
| CCGCATATATCAAATGTTGA+GGG | - | chr2_2:6207605-6207624 | Msa0233810:CDS | 35.0% | |
| GAGAATGAAGGATGACATAA+AGG | - | chr2_2:6207890-6207909 | Msa0233810:intron | 35.0% | |
| GCACCTATTATTTCCGAAAA+TGG | - | chr2_2:6207923-6207942 | Msa0233810:intron | 35.0% | |
| ! | GCTCCATTTTCGGAAATAAT+AGG | + | chr2_2:6207929-6207948 | None:intergenic | 35.0% |
| GATCAACTCCTACATAATCA+AGG | - | chr2_2:6207966-6207985 | Msa0233810:intron | 35.0% | |
| CAACATATGATATGTTGGGT+GGG | + | chr2_2:6208000-6208019 | None:intergenic | 35.0% | |
| TCAACATATGATATGTTGGG+TGG | + | chr2_2:6208001-6208020 | None:intergenic | 35.0% | |
| GAGTCTCGAAAGCAACTTAA+TGG | + | chr2_2:6205207-6205226 | None:intergenic | 40.0% | |
| TTGCTTTCGAGACTCTTCTT+GGG | - | chr2_2:6205212-6205231 | Msa0233810:intron | 40.0% | |
| TTCTTGGGATGATCCATTTC+CGG | - | chr2_2:6205227-6205246 | Msa0233810:intron | 40.0% | |
| !! | GCACGGTCAAAATATTTTGG+GGG | - | chr2_2:6205373-6205392 | Msa0233810:CDS | 40.0% |
| ! | TTTTCATGTTGCAGGGATGT+AGG | - | chr2_2:6205656-6205675 | Msa0233810:intron | 40.0% |
| ! | TGCATTTCCCAAGAAGCTTT+TGG | + | chr2_2:6205696-6205715 | None:intergenic | 40.0% |
| AAGAGGGGATTACATAGGAA+AGG | + | chr2_2:6205773-6205792 | None:intergenic | 40.0% | |
| CCAAAAAGAGGGGATTACAT+AGG | + | chr2_2:6205778-6205797 | None:intergenic | 40.0% | |
| ! | CCTATGTAATCCCCTCTTTT+TGG | - | chr2_2:6205775-6205794 | Msa0233810:intron | 40.0% |
| TGAAATCTACACATAGCTGC+AGG | - | chr2_2:6206012-6206031 | Msa0233810:intron | 40.0% | |
| !!! | TTGGGATTTTTTCCCTCTCT+CGG | - | chr2_2:6206924-6206943 | Msa0233810:intron | 40.0% |
| !!! | ATTTTTTCCCTCTCTCGGAT+TGG | - | chr2_2:6206929-6206948 | Msa0233810:intron | 40.0% |
| AAACAATCCAATCCGAGAGA+GGG | + | chr2_2:6206939-6206958 | None:intergenic | 40.0% | |
| AAAACAATCCAATCCGAGAG+AGG | + | chr2_2:6206940-6206959 | None:intergenic | 40.0% | |
| ! | CATTTTCAGCTATGGTGTAC+GGG | - | chr2_2:6207124-6207143 | Msa0233810:intron | 40.0% |
| TTGACAATGGCTTGAAGTTC+CGG | + | chr2_2:6207158-6207177 | None:intergenic | 40.0% | |
| ! | ACATGTTTCTGTTGCATCCA+TGG | - | chr2_2:6207178-6207197 | Msa0233810:intron | 40.0% |
| ! | CTGCTTTGAACGCTATTATC+GGG | - | chr2_2:6207385-6207404 | Msa0233810:intron | 40.0% |
| TTGAACGCTATTATCGGGTA+TGG | - | chr2_2:6207390-6207409 | Msa0233810:intron | 40.0% | |
| TGAACGCTATTATCGGGTAT+GGG | - | chr2_2:6207391-6207410 | Msa0233810:intron | 40.0% | |
| ATAAAATTTGTCACGGGCAC+GGG | + | chr2_2:6207521-6207540 | None:intergenic | 40.0% | |
| CCAGGGATGGCAAAAAAAAA+CGG | + | chr2_2:6207563-6207582 | None:intergenic | 40.0% | |
| GCCGCATATATCAAATGTTG+AGG | - | chr2_2:6207604-6207623 | Msa0233810:CDS | 40.0% | |
| ! | AGGAAGATCTGCTCCATTTT+CGG | + | chr2_2:6207939-6207958 | None:intergenic | 40.0% |
| AGCTCTACGGAATTGGAATT+TGG | + | chr2_2:6208096-6208115 | None:intergenic | 40.0% | |
| AACAAAGAGCTCTACGGAAT+TGG | + | chr2_2:6208103-6208122 | None:intergenic | 40.0% | |
| GAATTGTAGATCGGACAGAG+AGG | + | chr2_2:6205163-6205182 | None:intergenic | 45.0% | |
| ! | GTTGCTTTCGAGACTCTTCT+TGG | - | chr2_2:6205211-6205230 | Msa0233810:intron | 45.0% |
| TCGACATCTGAGCAAGTCAT+CGG | - | chr2_2:6205323-6205342 | Msa0233810:CDS | 45.0% | |
| !! | TGATCGCTGGTTTAAAGCCT+TGG | - | chr2_2:6205950-6205969 | Msa0233810:intron | 45.0% |
| !! | TGGCTTTGTGTGACTCTTGT+TGG | - | chr2_2:6206129-6206148 | Msa0233810:CDS | 45.0% |
| ! | GTTTTATCTGAGCTCTCTGC+TGG | - | chr2_2:6206565-6206584 | Msa0233810:intron | 45.0% |
| CAGATACGTGACACTGATGA+CGG | + | chr2_2:6206614-6206633 | None:intergenic | 45.0% | |
| !! | CAAGAGTGGAAAAGGTACCA+TGG | + | chr2_2:6207198-6207217 | None:intergenic | 45.0% |
| TAAAATTTGTCACGGGCACG+GGG | + | chr2_2:6207520-6207539 | None:intergenic | 45.0% | |
| CAAAAAAAAACGGTGCACGC+TGG | + | chr2_2:6207553-6207572 | None:intergenic | 45.0% | |
| !!! | CCGTTTTTTTTTGCCATCCC+TGG | - | chr2_2:6207560-6207579 | Msa0233810:intron | 45.0% |
| ! | ACTTTTCTTTGGACCAGGGA+TGG | + | chr2_2:6207576-6207595 | None:intergenic | 45.0% |
| ! | CGCAACTTTTCTTTGGACCA+GGG | + | chr2_2:6207580-6207599 | None:intergenic | 45.0% |
| GGTCGTGTTGAAGAGAATGA+AGG | - | chr2_2:6207878-6207897 | Msa0233810:intron | 45.0% | |
| ATGGAGCAGATCTTCCTGTT+TGG | - | chr2_2:6207942-6207961 | Msa0233810:intron | 45.0% | |
| ! | GTAGGAGTTGATCTCCAAAC+AGG | + | chr2_2:6207959-6207978 | None:intergenic | 45.0% |
| TTGTAGATCGGACAGAGAGG+AGG | + | chr2_2:6205160-6205179 | None:intergenic | 50.0% | |
| ATCGGAGATCCAGTACTCGA+CGG | + | chr2_2:6205267-6205286 | None:intergenic | 50.0% | |
| !! | GCGCTAGAAGTCGTTTTGCA+CGG | - | chr2_2:6205356-6205375 | Msa0233810:CDS | 50.0% |
| TCATGTTGCAGGGATGTAGG+TGG | - | chr2_2:6205659-6205678 | Msa0233810:intron | 50.0% | |
| ! | CATAGTGATGAGGCGTCTCA+TGG | - | chr2_2:6205988-6206007 | Msa0233810:intron | 50.0% |
| ! | TGGTGTACGGGTTACATCTC+CGG | - | chr2_2:6207136-6207155 | Msa0233810:intron | 50.0% |
| ! | GCGCAACTTTTCTTTGGACC+AGG | + | chr2_2:6207581-6207600 | None:intergenic | 50.0% |
| TCGGACAGAGAGGAGGAAGA+TGG | + | chr2_2:6205153-6205172 | None:intergenic | 55.0% | |
| TCCAGTACTCGACGGATGCT+CGG | + | chr2_2:6205259-6205278 | None:intergenic | 55.0% | |
| !! | GCTGCAGGCTGTTTTCGTGA+TGG | - | chr2_2:6206027-6206046 | Msa0233810:intron | 55.0% |
| TTATCGGGTATGGGTACCCG+CGG | - | chr2_2:6207400-6207419 | Msa0233810:intron | 55.0% | |
| TTTGCTGATACCCGTTCCCG+CGG | + | chr2_2:6207420-6207439 | None:intergenic | 55.0% | |
| ! | GGCTGCGCGCAACTTTTCTT+TGG | + | chr2_2:6207587-6207606 | None:intergenic | 55.0% |
| AGTACTCGACGGATGCTCGG+AGG | + | chr2_2:6205256-6205275 | None:intergenic | 60.0% | |
| TCCGAGCATCCGTCGAGTAC+TGG | - | chr2_2:6205255-6205274 | Msa0233810:intron | 60.0% | |
| TATCGGGTATGGGTACCCGC+GGG | - | chr2_2:6207401-6207420 | Msa0233810:intron | 60.0% | |
| TTGCTGATACCCGTTCCCGC+GGG | + | chr2_2:6207419-6207438 | None:intergenic | 60.0% | |
| ! | GCACGGGGCTGGTAGCTAAA+CGG | + | chr2_2:6207505-6207524 | None:intergenic | 60.0% |
| TGCTCGGAGGTCGCCGGAAA+TGG | + | chr2_2:6205243-6205262 | None:intergenic | 65.0% | |
| GGTATGGGTACCCGCGGGAA+CGG | - | chr2_2:6207406-6207425 | Msa0233810:intron | 65.0% | |
| GTATGGGTACCCGCGGGAAC+GGG | - | chr2_2:6207407-6207426 | Msa0233810:intron | 65.0% | |
| ATTTGTCACGGGCACGGGGC+TGG | + | chr2_2:6207516-6207535 | None:intergenic | 65.0% | |
| GACGGATGCTCGGAGGTCGC+CGG | + | chr2_2:6205249-6205268 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 6205141 | 6208155 | 6205141 | ID=Msa0233810;Name=Msa0233810 |
| chr2_2 | mRNA | 6205141 | 6208155 | 6205141 | ID=Msa0233810-mRNA-1;Parent=Msa0233810;Name=Msa0233810-mRNA-1;_AED=0.45;_eAED=0.64;_QI=0|0.25|0.4|1|0.75|0.8|5|0|158 |
| chr2_2 | exon | 6207994 | 6208155 | 6207994 | ID=Msa0233810-mRNA-1:exon:2790;Parent=Msa0233810-mRNA-1 |
| chr2_2 | exon | 6207580 | 6207626 | 6207580 | ID=Msa0233810-mRNA-1:exon:2789;Parent=Msa0233810-mRNA-1 |
| chr2_2 | exon | 6206097 | 6206163 | 6206097 | ID=Msa0233810-mRNA-1:exon:2788;Parent=Msa0233810-mRNA-1 |
| chr2_2 | exon | 6205309 | 6205420 | 6205309 | ID=Msa0233810-mRNA-1:exon:2787;Parent=Msa0233810-mRNA-1 |
| chr2_2 | exon | 6205141 | 6205229 | 6205141 | ID=Msa0233810-mRNA-1:exon:2786;Parent=Msa0233810-mRNA-1 |
| chr2_2 | CDS | 6207994 | 6208155 | 6207994 | ID=Msa0233810-mRNA-1:cds;Parent=Msa0233810-mRNA-1 |
| chr2_2 | CDS | 6207580 | 6207626 | 6207580 | ID=Msa0233810-mRNA-1:cds;Parent=Msa0233810-mRNA-1 |
| chr2_2 | CDS | 6206097 | 6206163 | 6206097 | ID=Msa0233810-mRNA-1:cds;Parent=Msa0233810-mRNA-1 |
| chr2_2 | CDS | 6205309 | 6205420 | 6205309 | ID=Msa0233810-mRNA-1:cds;Parent=Msa0233810-mRNA-1 |
| chr2_2 | CDS | 6205141 | 6205229 | 6205141 | ID=Msa0233810-mRNA-1:cds;Parent=Msa0233810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
