AlfalfaGEDB | Msa0077670

M. sativa cultivar zhongmu-4 / Msa0077670

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077670	KEH35146.1	89.831	59	6	0	71	129	9	67	3.20e-28	110

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077670	A0A072V0B1	89.831	59	6	0	71	129	9	67	1.53e-28	110

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011170	Msa0077670	0.800766	1.235581e-48	-8.615850e-47
Msa0043980	Msa0077670	0.807838	4.155916e-50	-8.615850e-47
Msa0060510	Msa0077670	0.804989	1.657127e-49	-8.615850e-47
Msa0068680	Msa0077670	0.820969	5.177613e-53	-8.615850e-47
Msa0077610	Msa0077670	0.968521	8.535822e-129	-8.615850e-47
Msa0077670	Msa0100090	0.802869	4.570910e-49	-8.615850e-47
Msa0077670	Msa0115810	0.804010	2.651732e-49	-8.615850e-47
Msa0077670	Msa0157310	0.951265	2.937781e-109	-8.615850e-47
Msa0077670	Msa0159770	0.809758	1.615341e-50	-8.615850e-47
Msa0077670	Msa0166870	0.802125	6.505967e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0077670	MtrunA17_Chr6g0463371	76.316	38	8	1	99	136	1	37	4.19e-11	55.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 58 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGTGGAAAGGAATAT+GGG	0.480626	1_2:+54627034	Msa0077670:three_prime_UTR
AAATTGTGCCAAAAGCTTCT+TGG	0.335598	1_2:+54621608	Msa0077670:CDS
AACAGAAACATGTTTGACAA+TGG	0.625197	1_2:-54623091	None:intergenic
AATTGTGCCAAAAGCTTCTT+GGG	0.341672	1_2:+54621609	Msa0077670:CDS
ACATGTTTCTGTTGCATCCA+TGG	0.469525	1_2:+54623101	Msa0077670:CDS
ACATTAAATTAATCCTACCT+AGG	0.599212	1_2:+54627327	Msa0077670:three_prime_UTR
AGGATGGCGTTGGAGTGTTT+TGG	0.393788	1_2:+54626530	Msa0077670:CDS
AGGTGGAAGGAAATGGACAT+TGG	0.628852	1_2:+54627126	Msa0077670:three_prime_UTR
AGTACTCGACGGATGCTCGG+AGG	0.722695	1_2:-54621175	None:intergenic
AGTCGGATAGAATTGTAGAT+CGG	0.627874	1_2:-54621091	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGTTTCGAAAAATGAGT+CGG	-	chr1_2:54621111-54621130	None:intergenic	30.0%
AAATAAGGAAAAAATCCGCA+AGG	-	chr1_2:54621458-54621477	None:intergenic	30.0%
TATAACCTACTTGTCTAATG+TGG	+	chr1_2:54621522-54621541	Msa0077670:intron	30.0%
ATATTCCACATTAGACAAGT+AGG	-	chr1_2:54621530-54621549	None:intergenic	30.0%
TGCAAGTAATGGCTAAATAA+CGG	+	chr1_2:54621635-54621654	Msa0077670:intron	30.0%
AGGAAAGGACATAAAAAAAG+GGG	-	chr1_2:54621681-54621700	None:intergenic	30.0%
TAATGAATTTGTATGATCGC+TGG	+	chr1_2:54621860-54621879	Msa0077670:intron	30.0%
TATATCGCAACTAACTTTGT+GGG	-	chr1_2:54622005-54622024	None:intergenic	30.0%
TTTGAAAACTGGTTATTTGC+AGG	-	chr1_2:54622149-54622168	None:intergenic	30.0%
GAAGAAGCAATTGTAATACA+AGG	+	chr1_2:54622672-54622691	Msa0077670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	54621063	54627378	54621063	ID=Msa0077670;Name=Msa0077670
chr1_2	mRNA	54621063	54627378	54621063	ID=Msa0077670-mRNA-1;Parent=Msa0077670;Name=Msa0077670-mRNA-1;_AED=0.40;_eAED=0.51;_QI=0\|0.4\|0.66\|1\|0.8\|0.66\|6\|413\|154
chr1_2	exon	54621063	54621224	54621063	ID=Msa0077670-mRNA-1:exon:16955;Parent=Msa0077670-mRNA-1
chr1_2	exon	54621593	54621639	54621593	ID=Msa0077670-mRNA-1:exon:16956;Parent=Msa0077670-mRNA-1
chr1_2	exon	54623056	54623122	54623056	ID=Msa0077670-mRNA-1:exon:16957;Parent=Msa0077670-mRNA-1
chr1_2	exon	54623799	54623910	54623799	ID=Msa0077670-mRNA-1:exon:16958;Parent=Msa0077670-mRNA-1
chr1_2	exon	54626525	54626569	54626525	ID=Msa0077670-mRNA-1:exon:16959;Parent=Msa0077670-mRNA-1
chr1_2	exon	54626934	54627378	54626934	ID=Msa0077670-mRNA-1:exon:16960;Parent=Msa0077670-mRNA-1
chr1_2	CDS	54621063	54621224	54621063	ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2	CDS	54621593	54621639	54621593	ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2	CDS	54623056	54623122	54623056	ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2	CDS	54623799	54623910	54623799	ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2	CDS	54626525	54626569	54626525	ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2	CDS	54626934	54626965	54626934	ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2	three_prime_UTR	54626966	54627378	54626966	ID=Msa0077670-mRNA-1:three_prime_utr;Parent=Msa0077670-mRNA-1

Gene Sequence

>Msa0077670

ATGTTAGCACCATCTTCCTCCTCTCTGTCCGATCTACAATTCTATCCGACTCATTTTTCGAAACCATTAAGTTGCTGTCGAGACTCTTCTTGGGATGATCCATTTCCGGCGACCTCCGAGCATCCGTCGAGTACTGGATCTCCGATTCTCATAAAAAAAACCGGATGTAGGTGGTTTAAATTGTGCCAAAAGCTTCTTGGGAAATGCAACTATGGTGTACGGGTTACATCTCCGGAACTTCAAGCCATTGTCAAACATGTTTCTGTTGCATCCATGGAGGTCGTGTTGAAGAGAATGAAGGATGACATAAAGGAGATAAGATGGCACCTATTATTTCCGAAAATGGAGCAGATCTTCCTGTTTGGAGATCAACTCCTACATAATCAAGGAATTAGGATGGCGTTGGAGTGTTTTGGCAGTGATCTCCCTGCTGGGAATACACAAAAAAAAAAAGGAAACAAATGA

Protein sequence

>Msa0077670

MLAPSSSSLSDLQFYPTHFSKPLSCCRDSSWDDPFPATSEHPSSTGSPILIKKTGCRWFKLCQKLLGKCNYGVRVTSPELQAIVKHVSVASMEVVLKRMKDDIKEIRWHLLFPKMEQIFLFGDQLLHNQGIRMALECFGSDLPAGNTQKKKGNK*