AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077670 MtrunA17_Chr6g0463371 76.316 38 8 1 99 136 1 37 4.19e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACCTATTATTTCCGAAAA+TGG 0.182555 1_2:+54623846 Msa0077670:CDS
TTAATTAATACTCAGGAATT+AGG 0.219728 1_2:+54626510 Msa0077670:intron
TTCTTGGGATGATCCATTTC+CGG 0.229145 1_2:+54621149 Msa0077670:CDS
GAGTCTCGACAGCAACTTAA+TGG 0.240881 1_2:-54621126 None:intergenic
CTTTCCACCTCTTTATGTTT+AGG 0.240922 1_2:-54627025 None:intergenic
TAAAGAGGTGGAAAGGAATA+TGG 0.244687 1_2:+54627033 Msa0077670:three_prime_UTR
TTATAGGGTGGAGCCTTTAT+AGG 0.274138 1_2:+54627246 Msa0077670:three_prime_UTR
TTGACAATGGCTTGAAGTTC+CGG 0.315301 1_2:-54623078 None:intergenic
GAAGGTCATTGGAGAATATA+AGG 0.330932 1_2:+54626966 Msa0077670:three_prime_UTR
AAATTGTGCCAAAAGCTTCT+TGG 0.335598 1_2:+54621608 Msa0077670:CDS
GTGTAGTAGAACAATTAGTA+TGG 0.338655 1_2:+54627066 Msa0077670:three_prime_UTR
AATTGTGCCAAAAGCTTCTT+GGG 0.341672 1_2:+54621609 Msa0077670:CDS
TGCATTTCCCAAGAAGCTTT+TGG 0.342440 1_2:-54621616 None:intergenic
GAGAATGAAGGATGACATAA+AGG 0.345215 1_2:+54623813 Msa0077670:CDS
TGCTCGGAGGTCGCCGGAAA+TGG 0.366381 1_2:-54621162 None:intergenic
GTTGCTGTCGAGACTCTTCT+TGG 0.370381 1_2:+54621133 Msa0077670:CDS
ATAAACAAAACAGCCTATAA+AGG 0.374122 1_2:-54627259 None:intergenic
AGGATGGCGTTGGAGTGTTT+TGG 0.393788 1_2:+54626530 Msa0077670:CDS
ATTATTGAACCATCAAAATC+TGG 0.406563 1_2:+54627001 Msa0077670:three_prime_UTR
GAAACAAATGAGAAGGTCAT+TGG 0.414854 1_2:+54626955 Msa0077670:exon
ATGGAGCAGATCTTCCTGTT+TGG 0.427177 1_2:+54623865 Msa0077670:CDS
TCCGAGCATCCGTCGAGTAC+TGG 0.429654 1_2:+54621177 Msa0077670:CDS
GATATAGAGGTGGAAGGAAA+TGG 0.452347 1_2:+54627119 Msa0077670:three_prime_UTR
ACATGTTTCTGTTGCATCCA+TGG 0.469525 1_2:+54623101 Msa0077670:CDS
TTTGGCAGTGATCTCCCTGC+TGG 0.470036 1_2:+54626548 Msa0077670:CDS
TGGTGTACGGGTTACATCTC+CGG 0.477444 1_2:+54623059 Msa0077670:CDS
AAAGAGGTGGAAAGGAATAT+GGG 0.480626 1_2:+54627034 Msa0077670:three_prime_UTR
TATGATTACCTTGATTATGT+AGG 0.491010 1_2:-54623897 None:intergenic
GTAGGAGTTGATCTCCAAAC+AGG 0.497937 1_2:-54623879 None:intergenic
TTGCTGTCGAGACTCTTCTT+GGG 0.505566 1_2:+54621134 Msa0077670:CDS
TCCAGTACTCGACGGATGCT+CGG 0.515552 1_2:-54621178 None:intergenic
ATCTGGACCTAAACATAAAG+AGG 0.520948 1_2:+54627018 Msa0077670:three_prime_UTR
ATGACATAAAGGAGATAAGA+TGG 0.525273 1_2:+54623824 Msa0077670:CDS
CTCAGGAATTAGGATGGCGT+TGG 0.530379 1_2:+54626520 Msa0077670:intron
GACGGATGCTCGGAGGTCGC+CGG 0.537445 1_2:-54621168 None:intergenic
GATCAACTCCTACATAATCA+AGG 0.538359 1_2:+54623889 Msa0077670:CDS
ATGCTTTCTATTGCCTAGGT+AGG 0.540064 1_2:-54627340 None:intergenic
TCAATGACAAAGCGATATAG+AGG 0.545477 1_2:+54627106 Msa0077670:three_prime_UTR
TCGGACAGAGAGGAGGAAGA+TGG 0.550968 1_2:-54621072 None:intergenic
GGAGCATAACACTGCAACAA+AGG 0.557139 1_2:+54627147 Msa0077670:three_prime_UTR
GGTCGTGTTGAAGAGAATGA+AGG 0.558124 1_2:+54623801 Msa0077670:CDS
TCATGTTGCAGGGATGTAGG+TGG 0.572168 1_2:+54621582 Msa0077670:intron
CTAAACATAAAGAGGTGGAA+AGG 0.577902 1_2:+54627026 Msa0077670:three_prime_UTR
TGTAGTAGAACAATTAGTAT+GGG 0.580023 1_2:+54627067 Msa0077670:three_prime_UTR
TGATATGCTTTCTATTGCCT+AGG 0.591761 1_2:-54627344 None:intergenic
TTAATACTCAGGAATTAGGA+TGG 0.593289 1_2:+54626514 Msa0077670:intron
ACATTAAATTAATCCTACCT+AGG 0.599212 1_2:+54627327 Msa0077670:three_prime_UTR
TTGTAGATCGGACAGAGAGG+AGG 0.610463 1_2:-54621079 None:intergenic
CAAAGCGATATAGAGGTGGA+AGG 0.623526 1_2:+54627113 Msa0077670:three_prime_UTR
AACAGAAACATGTTTGACAA+TGG 0.625197 1_2:-54623091 None:intergenic
AGTCGGATAGAATTGTAGAT+CGG 0.627874 1_2:-54621091 None:intergenic
AGGTGGAAGGAAATGGACAT+TGG 0.628852 1_2:+54627126 Msa0077670:three_prime_UTR
GAATTGTAGATCGGACAGAG+AGG 0.640211 1_2:-54621082 None:intergenic
TGGACCTAAACATAAAGAGG+TGG 0.642850 1_2:+54627021 Msa0077670:three_prime_UTR
ATCGGAGATCCAGTACTCGA+CGG 0.647965 1_2:-54621186 None:intergenic
ATGACAAAGCGATATAGAGG+TGG 0.648420 1_2:+54627109 Msa0077670:three_prime_UTR
GATGATGGTACTGACCAGCA+GGG 0.714852 1_2:-54626562 None:intergenic
AGTACTCGACGGATGCTCGG+AGG 0.722695 1_2:-54621175 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAAAATCCAATATA+CGG - chr1_2:54621226-54621245 None:intergenic 10.0%
!! GAATAAAATAAAAAGAAATA+AGG - chr1_2:54621473-54621492 None:intergenic 10.0%
!!! CTGTATATTATATTTTTTTA+AGG + chr1_2:54621492-54621511 Msa0077670:intron 10.0%
!!! ATTTGAAAATCTATTTTAAA+GGG - chr1_2:54622317-54622336 None:intergenic 10.0%
!!! TTTTAGGAAATTTTTATATT+CGG + chr1_2:54623179-54623198 Msa0077670:intron 10.0%
!! AAATATAATTTATAATAACG+AGG - chr1_2:54625645-54625664 None:intergenic 10.0%
!!! GTTTAAGTTTAAATATAATT+AGG + chr1_2:54626674-54626693 Msa0077670:intron 10.0%
!!! TTTTTATTTTTTTGCTTTAT+AGG + chr1_2:54627230-54627249 Msa0077670:three_prime_UTR 10.0%
!!! TTTTATTTTTTTGCTTTATA+GGG + chr1_2:54627231-54627250 Msa0077670:three_prime_UTR 10.0%
!!! TGTTTTTTTGTTATGAAATT+AGG + chr1_2:54621371-54621390 Msa0077670:intron 15.0%
!!! CACATTTTTTATGTTAAAAA+AGG - chr1_2:54621796-54621815 None:intergenic 15.0%
!!! GATTTGAAAATCTATTTTAA+AGG - chr1_2:54622318-54622337 None:intergenic 15.0%
!! TTAGAAGAAAAAAAATAAAG+AGG - chr1_2:54622747-54622766 None:intergenic 15.0%
!! TAAAAAAAACACAACAATTT+GGG - chr1_2:54623164-54623183 None:intergenic 15.0%
!! CAGTTTATAACTAATTTATT+CGG - chr1_2:54623281-54623300 None:intergenic 15.0%
!!! GTTCAAAATTTATTTTGAAA+GGG - chr1_2:54624124-54624143 None:intergenic 15.0%
!!! AGTTCAAAATTTATTTTGAA+AGG - chr1_2:54624125-54624144 None:intergenic 15.0%
!!! ACACTATCAAATTTAAAATA+GGG - chr1_2:54624729-54624748 None:intergenic 15.0%
!!! AACACTATCAAATTTAAAAT+AGG - chr1_2:54624730-54624749 None:intergenic 15.0%
!!! TATTTTAAATTTGATAGTGT+TGG + chr1_2:54624729-54624748 Msa0077670:intron 15.0%
!!! AACTTATTTTGTCTAAAATA+TGG + chr1_2:54624762-54624781 Msa0077670:intron 15.0%
!! TTAGTTAAAAAATATGATGT+AGG + chr1_2:54624905-54624924 Msa0077670:intron 15.0%
!! TAGTTAAAAAATATGATGTA+GGG + chr1_2:54624906-54624925 Msa0077670:intron 15.0%
!!! AATATTTTTAAAGAATGCAT+AGG + chr1_2:54626048-54626067 Msa0077670:intron 15.0%
!!! ATATTTTTAAAGAATGCATA+GGG + chr1_2:54626049-54626068 Msa0077670:intron 15.0%
!!! GAAACAGAATAATATTTTAT+TGG - chr1_2:54626197-54626216 None:intergenic 15.0%
!! TGAATATGAAAATAAAAGAA+TGG + chr1_2:54626392-54626411 Msa0077670:intron 15.0%
!! TCATAAAAAAAACCGTATAT+TGG + chr1_2:54621211-54621230 Msa0077670:intron 20.0%
!!! TTTATTTTTTTTCATGTTGC+AGG + chr1_2:54621571-54621590 Msa0077670:intron 20.0%
!!! TTATTTTTTTTCATGTTGCA+GGG + chr1_2:54621572-54621591 Msa0077670:intron 20.0%
!!! TTTCTTTTTAACCAAAAAGA+GGG - chr1_2:54621712-54621731 None:intergenic 20.0%
!!! AAAAAAGGTTTTGATATTAC+AGG + chr1_2:54621763-54621782 Msa0077670:intron 20.0%
!!! ATAAGTAGTTATTTCAAAAG+TGG - chr1_2:54622096-54622115 None:intergenic 20.0%
!!! AATAACCAGTTTTCAAAAAA+AGG + chr1_2:54622152-54622171 Msa0077670:intron 20.0%
!!! ATAACCAGTTTTCAAAAAAA+GGG + chr1_2:54622153-54622172 Msa0077670:intron 20.0%
!! AATCTTCATAAAGAAAATCA+AGG + chr1_2:54622255-54622274 Msa0077670:intron 20.0%
!!! AAACATAGCATTTAAAACAA+GGG - chr1_2:54622345-54622364 None:intergenic 20.0%
!!! TAAACATAGCATTTAAAACA+AGG - chr1_2:54622346-54622365 None:intergenic 20.0%
!! ATATGTTAAAATATAGTAGC+TGG + chr1_2:54622430-54622449 Msa0077670:intron 20.0%
!! AAAAGATTTAAAAACGCAAA+AGG + chr1_2:54622791-54622810 Msa0077670:intron 20.0%
!!! AGTTTTCTTAAGTTATTCAT+AGG - chr1_2:54622935-54622954 None:intergenic 20.0%
!!! TTTATTTTCATTTTCAGCTA+TGG + chr1_2:54623039-54623058 Msa0077670:intron 20.0%
!! CTAAAAAAAACACAACAATT+TGG - chr1_2:54623165-54623184 None:intergenic 20.0%
!!! CAAATTGTTGTGTTTTTTTT+AGG + chr1_2:54623163-54623182 Msa0077670:intron 20.0%
!! TGTCTGTATCTATAAAATAA+TGG + chr1_2:54623367-54623386 Msa0077670:intron 20.0%
!! GTCTGTATCTATAAAATAAT+GGG + chr1_2:54623368-54623387 Msa0077670:intron 20.0%
!!! AAAATTTGAGTATTTTGCTT+TGG - chr1_2:54623708-54623727 None:intergenic 20.0%
!! ACAATAACATTCAATAGAAT+TGG - chr1_2:54623955-54623974 None:intergenic 20.0%
!! TATCATTATAAAGTATGCAA+CGG - chr1_2:54624420-54624439 None:intergenic 20.0%
!!! CACTATCAAATTTAAAATAG+GGG - chr1_2:54624728-54624747 None:intergenic 20.0%
!!! TTTTAGACAAAATAAGTTTG+TGG - chr1_2:54624760-54624779 None:intergenic 20.0%
!! TATTTAACCAACCAATATTA+CGG - chr1_2:54625008-54625027 None:intergenic 20.0%
!! ATATTAAAATGACATTTGTG+AGG + chr1_2:54625077-54625096 Msa0077670:intron 20.0%
!! TAGAGAAGAATAAATCATTT+AGG - chr1_2:54625477-54625496 None:intergenic 20.0%
!! AAAACAGTACTTACTAATTA+AGG - chr1_2:54625770-54625789 None:intergenic 20.0%
!!! TATTTTTAAAGAATGCATAG+GGG + chr1_2:54626050-54626069 Msa0077670:intron 20.0%
!! TATAAAAAGAAGACTTCATT+AGG - chr1_2:54626087-54626106 None:intergenic 20.0%
!!! TCTTTTATTTTCATATTCAG+AGG - chr1_2:54626391-54626410 None:intergenic 20.0%
!! AAATAAATTTCATCAAGATC+TGG - chr1_2:54626470-54626489 None:intergenic 20.0%
!! TTAATTAATACTCAGGAATT+AGG + chr1_2:54626510-54626529 Msa0077670:intron 20.0%
!! AAGATATTATCATACAAAGT+TGG - chr1_2:54626652-54626671 None:intergenic 20.0%
!! GGATGTATATTAGAAATATA+AGG + chr1_2:54626746-54626765 Msa0077670:intron 20.0%
!! TTGAAGATGGATAAAATTAT+TGG - chr1_2:54626903-54626922 None:intergenic 20.0%
!!! TATTTTACAGCACATTTAAT+AGG - chr1_2:54627294-54627313 None:intergenic 20.0%
!!! ACGGTTTTTTTTATGAGAAT+CGG - chr1_2:54621207-54621226 None:intergenic 25.0%
! ACAAAATCAAACTACGATTA+TGG - chr1_2:54621332-54621351 None:intergenic 25.0%
! AGTTAGTATTTATTTCCTTG+CGG + chr1_2:54621440-54621459 Msa0077670:intron 25.0%
! TAGGAAAGGACATAAAAAAA+GGG - chr1_2:54621682-54621701 None:intergenic 25.0%
! ATAGGAAAGGACATAAAAAA+AGG - chr1_2:54621683-54621702 None:intergenic 25.0%
!! TTCTTTTTAACCAAAAAGAG+GGG - chr1_2:54621711-54621730 None:intergenic 25.0%
!! CTTTCTTTTTAACCAAAAAG+AGG - chr1_2:54621713-54621732 None:intergenic 25.0%
!!! CTTTTTGGTTAAAAAGAAAG+CGG + chr1_2:54621713-54621732 Msa0077670:intron 25.0%
! ACTGATCTTGTATAGAAAAA+AGG + chr1_2:54621748-54621767 Msa0077670:intron 25.0%
! TGATGTTAAAACAAAAACCA+AGG - chr1_2:54621893-54621912 None:intergenic 25.0%
!!! TTTTCGTGATGGAAAATAAA+TGG + chr1_2:54621961-54621980 Msa0077670:intron 25.0%
!! AACATAGCATTTAAAACAAG+GGG - chr1_2:54622344-54622363 None:intergenic 25.0%
! AGCTCAGATAAAACAATATA+CGG - chr1_2:54622482-54622501 None:intergenic 25.0%
!!! TATAGATCAAGGTTGATAAA+GGG - chr1_2:54622565-54622584 None:intergenic 25.0%
!!! TTATAGATCAAGGTTGATAA+AGG - chr1_2:54622566-54622585 None:intergenic 25.0%
! CAATGATGAATTATAGATCA+AGG - chr1_2:54622576-54622595 None:intergenic 25.0%
!!! TAAATCTTTTTTGCAAGAGT+TGG - chr1_2:54622781-54622800 None:intergenic 25.0%
! TTTAAAAACGCAAAAGGTAA+TGG + chr1_2:54622797-54622816 Msa0077670:intron 25.0%
! ATAAATGTCATCTTTACATG+AGG - chr1_2:54623024-54623043 None:intergenic 25.0%
! TTTCTATATACAAACAAGAG+TGG - chr1_2:54623135-54623154 None:intergenic 25.0%
! ATACCTATTTATTATACACG+TGG + chr1_2:54623398-54623417 Msa0077670:intron 25.0%
! TATCCACGTGTATAATAAAT+AGG - chr1_2:54623404-54623423 None:intergenic 25.0%
! GAAAATTGATGAAACAATAC+AGG + chr1_2:54623777-54623796 Msa0077670:intron 25.0%
! TATGATTACCTTGATTATGT+AGG - chr1_2:54623900-54623919 None:intergenic 25.0%
! ATTCAATAGAATTGGACAAA+AGG - chr1_2:54623947-54623966 None:intergenic 25.0%
!! GCATTTATTTAACTTTGCAA+GGG - chr1_2:54624329-54624348 None:intergenic 25.0%
!! TGCATTTATTTAACTTTGCA+AGG - chr1_2:54624330-54624349 None:intergenic 25.0%
! ATGGAAATATTTCACAAATG+AGG - chr1_2:54624464-54624483 None:intergenic 25.0%
! ATAGGCTGATATAAACTATA+GGG - chr1_2:54624488-54624507 None:intergenic 25.0%
! AATAGGCTGATATAAACTAT+AGG - chr1_2:54624489-54624508 None:intergenic 25.0%
! TACTTCTCTGTCAAATTATT+TGG + chr1_2:54624589-54624608 Msa0077670:intron 25.0%
! CAAATTATTTGGTTATCTCA+TGG + chr1_2:54624600-54624619 Msa0077670:intron 25.0%
! ATGAAAAAAGGGATGAAAAA+GGG - chr1_2:54624687-54624706 None:intergenic 25.0%
! TCTGCAAAATGATGAAAAAA+GGG - chr1_2:54624698-54624717 None:intergenic 25.0%
!! GTTTCAAAATCTTACAGTTT+TGG - chr1_2:54624933-54624952 None:intergenic 25.0%
!!! TTTTGGCTTAATTGTAGTTT+TGG - chr1_2:54624963-54624982 None:intergenic 25.0%
! ACAATTAAGCCAAAACTAAT+AGG + chr1_2:54624968-54624987 Msa0077670:intron 25.0%
!!! CAATTATCACCTATTAGTTT+TGG - chr1_2:54624980-54624999 None:intergenic 25.0%
!! AACTTTTTATGTAAGTTGTG+AGG + chr1_2:54625108-54625127 Msa0077670:intron 25.0%
! GAAATTCATAAAGACAAATC+TGG + chr1_2:54625226-54625245 Msa0077670:intron 25.0%
!!! TACATGACTTCATTTTTGAT+TGG + chr1_2:54625336-54625355 Msa0077670:intron 25.0%
!! AGTATCAAACTTTTACTTCA+TGG - chr1_2:54625378-54625397 None:intergenic 25.0%
!!! GATACTGTTTTTGATACAAT+TGG + chr1_2:54625392-54625411 Msa0077670:intron 25.0%
!!! TTATTTTAGTGTTGTTCAGA+AGG - chr1_2:54625615-54625634 None:intergenic 25.0%
! TATACATCAAGTTTGATGAA+GGG - chr1_2:54625726-54625745 None:intergenic 25.0%
!!! GTAAGTACTGTTTTATTCTT+TGG + chr1_2:54625776-54625795 Msa0077670:intron 25.0%
! TTATCTTACAACAGAAAAAG+AGG - chr1_2:54625974-54625993 None:intergenic 25.0%
! ACTATAACATCTTAATGAAG+AGG - chr1_2:54626238-54626257 None:intergenic 25.0%
!! TTCAGTTACACTTCATTTTA+TGG - chr1_2:54626356-54626375 None:intergenic 25.0%
! ATGAAAATAAAAGAATGGAG+AGG + chr1_2:54626397-54626416 Msa0077670:intron 25.0%
! TTGTGTCTTAATTAATACTC+AGG + chr1_2:54626503-54626522 Msa0077670:intron 25.0%
! AGAAATGCTAAACAAAACAA+TGG - chr1_2:54626587-54626606 None:intergenic 25.0%
!! ATCATACTTTTCTCCAAATA+TGG + chr1_2:54626704-54626723 Msa0077670:intron 25.0%
! TCTAATATACATCCTTCTAA+TGG - chr1_2:54626740-54626759 None:intergenic 25.0%
! ATGAGAAACAACAAATATGA+AGG - chr1_2:54626840-54626859 None:intergenic 25.0%
! GGGAATACACAAAAAAAAAA+AGG + chr1_2:54626933-54626952 Msa0077670:intron 25.0%
! AAAAAAGGAAACAAATGAGA+AGG + chr1_2:54626948-54626967 Msa0077670:exon 25.0%
! ATTATTGAACCATCAAAATC+TGG + chr1_2:54627001-54627020 Msa0077670:three_prime_UTR 25.0%
! TGTAGTAGAACAATTAGTAT+GGG + chr1_2:54627067-54627086 Msa0077670:three_prime_UTR 25.0%
!!! TATTTTTTTGCTTTATAGGG+TGG + chr1_2:54627234-54627253 Msa0077670:three_prime_UTR 25.0%
! ATAAACAAAACAGCCTATAA+AGG - chr1_2:54627262-54627281 None:intergenic 25.0%
! ACATTAAATTAATCCTACCT+AGG + chr1_2:54627327-54627346 Msa0077670:three_prime_UTR 25.0%
AATGGTTTCGAAAAATGAGT+CGG - chr1_2:54621111-54621130 None:intergenic 30.0%
! TTTGCACGGTCAAAATATTT+TGG + chr1_2:54621292-54621311 Msa0077670:intron 30.0%
! TTGCACGGTCAAAATATTTT+GGG + chr1_2:54621293-54621312 Msa0077670:intron 30.0%
AAATAAGGAAAAAATCCGCA+AGG - chr1_2:54621458-54621477 None:intergenic 30.0%
TATAACCTACTTGTCTAATG+TGG + chr1_2:54621522-54621541 Msa0077670:intron 30.0%
ATATTCCACATTAGACAAGT+AGG - chr1_2:54621530-54621549 None:intergenic 30.0%
TGCAAGTAATGGCTAAATAA+CGG + chr1_2:54621635-54621654 Msa0077670:intron 30.0%
AGGAAAGGACATAAAAAAAG+GGG - chr1_2:54621681-54621700 None:intergenic 30.0%
TAATGAATTTGTATGATCGC+TGG + chr1_2:54621860-54621879 Msa0077670:intron 30.0%
!! GTTTTAACATCATAGTGATG+AGG + chr1_2:54621901-54621920 Msa0077670:intron 30.0%
TATATCGCAACTAACTTTGT+GGG - chr1_2:54622005-54622024 None:intergenic 30.0%
! TAGTTATTTCAAAAGTGGTG+CGG - chr1_2:54622091-54622110 None:intergenic 30.0%
TTTGAAAACTGGTTATTTGC+AGG - chr1_2:54622149-54622168 None:intergenic 30.0%
!!! ATAGCCCTTTTTTTGAAAAC+TGG - chr1_2:54622160-54622179 None:intergenic 30.0%
! ATTTGTCTATTTGCTAGCAA+TGG + chr1_2:54622624-54622643 Msa0077670:intron 30.0%
!!! AATGGATACGATTTTGAGTT+TGG + chr1_2:54622642-54622661 Msa0077670:intron 30.0%
GAAGAAGCAATTGTAATACA+AGG + chr1_2:54622672-54622691 Msa0077670:intron 30.0%
AATATGCTCAAAGAATGCAT+TGG + chr1_2:54622828-54622847 Msa0077670:intron 30.0%
ATATGCTCAAAGAATGCATT+GGG + chr1_2:54622829-54622848 Msa0077670:intron 30.0%
AACAGAAACATGTTTGACAA+TGG - chr1_2:54623094-54623113 None:intergenic 30.0%
TATACAAACAAGAGTGGAAA+AGG - chr1_2:54623129-54623148 None:intergenic 30.0%
!! AAACACAACAATTTGGGTTT+TGG - chr1_2:54623158-54623177 None:intergenic 30.0%
AATTGATGAAACAATACAGG+AGG + chr1_2:54623780-54623799 Msa0077670:intron 30.0%
ATGACATAAAGGAGATAAGA+TGG + chr1_2:54623824-54623843 Msa0077670:CDS 30.0%
AGGTCAACATATGATATGTT+GGG - chr1_2:54623927-54623946 None:intergenic 30.0%
AAGGTCAACATATGATATGT+TGG - chr1_2:54623928-54623947 None:intergenic 30.0%
AAGTTTAACAAAGAGCTCTA+CGG - chr1_2:54624032-54624051 None:intergenic 30.0%
GTTAAACTTAATTTACACCC+TGG + chr1_2:54624043-54624062 Msa0077670:intron 30.0%
! CTTTTTATGCAATATGTCCA+GGG - chr1_2:54624063-54624082 None:intergenic 30.0%
! ACTTTTTATGCAATATGTCC+AGG - chr1_2:54624064-54624083 None:intergenic 30.0%
GAAATGCATAAACAACATGA+AGG + chr1_2:54624238-54624257 Msa0077670:intron 30.0%
GAAATATTTCACAAATGAGG+AGG - chr1_2:54624461-54624480 None:intergenic 30.0%
CTGATATAAACTATAGGGTA+TGG - chr1_2:54624483-54624502 None:intergenic 30.0%
!!! AGAAGATAGTTTTGATAGCA+AGG - chr1_2:54624627-54624646 None:intergenic 30.0%
AAAACTATCTTCTGATACCA+AGG + chr1_2:54624634-54624653 Msa0077670:intron 30.0%
CAAGGATATACTCTTAATTG+CGG + chr1_2:54624652-54624671 Msa0077670:intron 30.0%
! TATACTCTTAATTGCGGTTT+TGG + chr1_2:54624658-54624677 Msa0077670:intron 30.0%
TGAAAAAAGGGATGAAAAAG+GGG - chr1_2:54624686-54624705 None:intergenic 30.0%
GATGAAAAAAGGGATGAAAA+AGG - chr1_2:54624688-54624707 None:intergenic 30.0%
CTCTGCAAAATGATGAAAAA+AGG - chr1_2:54624699-54624718 None:intergenic 30.0%
AGACAAAATAAGTTTGTGGT+GGG - chr1_2:54624756-54624775 None:intergenic 30.0%
TAGACAAAATAAGTTTGTGG+TGG - chr1_2:54624757-54624776 None:intergenic 30.0%
!!! ACTGTAAGATTTTGAAACAG+CGG + chr1_2:54624935-54624954 Msa0077670:intron 30.0%
TAATTGCAACACCGTAATAT+TGG + chr1_2:54624994-54625013 Msa0077670:intron 30.0%
GGTTAAATATGTTAGACATC+TGG + chr1_2:54625019-54625038 Msa0077670:intron 30.0%
! ATCTGGTTAACTCTAGAAAA+AGG + chr1_2:54625036-54625055 Msa0077670:intron 30.0%
!! ATGACTTCATTTTTGATTGG+CGG + chr1_2:54625339-54625358 Msa0077670:intron 30.0%
GAAAGTAATCATGTTCCTTA+TGG + chr1_2:54625679-54625698 Msa0077670:intron 30.0%
TTCCTTATGGAATTCATCAT+AGG + chr1_2:54625692-54625711 Msa0077670:intron 30.0%
ATCCTATGATGAATTCCATA+AGG - chr1_2:54625697-54625716 None:intergenic 30.0%
CTATACATCAAGTTTGATGA+AGG - chr1_2:54625727-54625746 None:intergenic 30.0%
GTGCTTGTTTAAATTCATTG+TGG + chr1_2:54625798-54625817 Msa0077670:intron 30.0%
TTTGCTTTGTAACTTAGCAA+TGG + chr1_2:54625844-54625863 Msa0077670:intron 30.0%
!! AAAGAGGTATTGGATAGAAA+AGG - chr1_2:54625958-54625977 None:intergenic 30.0%
! TACAACAGAAAAAGAGGTAT+TGG - chr1_2:54625968-54625987 None:intergenic 30.0%
! CTTTCTAAAAACATCGAGAT+AGG + chr1_2:54626006-54626025 Msa0077670:intron 30.0%
TAAAAACATCGAGATAGGAA+AGG + chr1_2:54626011-54626030 Msa0077670:intron 30.0%
TTCCAACTGTAAAAATGAAG+AGG + chr1_2:54626309-54626328 Msa0077670:intron 30.0%
!! ATCCTCTTCATTTTTACAGT+TGG - chr1_2:54626314-54626333 None:intergenic 30.0%
AAAAGAATGGAGAGGTTAAA+AGG + chr1_2:54626405-54626424 Msa0077670:intron 30.0%
TTAATACTCAGGAATTAGGA+TGG + chr1_2:54626514-54626533 Msa0077670:intron 30.0%
CTAAACAAAACAATGGATGA+TGG - chr1_2:54626580-54626599 None:intergenic 30.0%
TGGAAGATGAATTCCATATT+TGG - chr1_2:54626720-54626739 None:intergenic 30.0%
CTGAGAAGCAAAAAATGAAT+AGG + chr1_2:54626784-54626803 Msa0077670:intron 30.0%
ACCTTTGTACACAATTTATC+TGG + chr1_2:54626810-54626829 Msa0077670:intron 30.0%
ACCAGATAAATTGTGTACAA+AGG - chr1_2:54626814-54626833 None:intergenic 30.0%
GAAAAGCTATTACATGAGAA+AGG - chr1_2:54626881-54626900 None:intergenic 30.0%
GTGTAGTAGAACAATTAGTA+TGG + chr1_2:54627066-54627085 Msa0077670:three_prime_UTR 30.0%
AGTCGGATAGAATTGTAGAT+CGG - chr1_2:54621094-54621113 None:intergenic 35.0%
! TGCACGGTCAAAATATTTTG+GGG + chr1_2:54621294-54621313 Msa0077670:intron 35.0%
AAATTGTGCCAAAAGCTTCT+TGG + chr1_2:54621608-54621627 Msa0077670:CDS 35.0%
AATTGTGCCAAAAGCTTCTT+GGG + chr1_2:54621609-54621628 Msa0077670:CDS 35.0%
TTCTTGGGAAATGCAAGTAA+TGG + chr1_2:54621624-54621643 Msa0077670:intron 35.0%
GTATATCGCAACTAACTTTG+TGG - chr1_2:54622006-54622025 None:intergenic 35.0%
ATACAATCTGTGTTCGCATT+GGG - chr1_2:54622028-54622047 None:intergenic 35.0%
AATACAATCTGTGTTCGCAT+TGG - chr1_2:54622029-54622048 None:intergenic 35.0%
CGAACACAGATTGTATTTGT+TGG + chr1_2:54622032-54622051 Msa0077670:intron 35.0%
! GGTGTTGAATACAAAAAGAG+TGG - chr1_2:54622121-54622140 None:intergenic 35.0%
ACTGGTTATTTGCAGGTTAT+TGG - chr1_2:54622142-54622161 None:intergenic 35.0%
! GTAGTCTAATGCTCTGTTTT+AGG + chr1_2:54622371-54622390 Msa0077670:intron 35.0%
AATGATGAAGCATAAGCATG+TGG + chr1_2:54622700-54622719 Msa0077670:intron 35.0%
ATGATGAAGCATAAGCATGT+GGG + chr1_2:54622701-54622720 Msa0077670:intron 35.0%
AAAGAGGTAATAGACAGAAG+AGG - chr1_2:54622731-54622750 None:intergenic 35.0%
! TCATTTTCAGCTATGGTGTA+CGG + chr1_2:54623046-54623065 Msa0077670:intron 35.0%
ATAGCGTTCAAAGCAGAAAT+TGG - chr1_2:54623304-54623323 None:intergenic 35.0%
! TCTGCTTTGAACGCTATTAT+CGG + chr1_2:54623307-54623326 Msa0077670:intron 35.0%
AATAAAATTTGTCACGGGCA+CGG - chr1_2:54623445-54623464 None:intergenic 35.0%
CGACGAATAAAATTTGTCAC+GGG - chr1_2:54623450-54623469 None:intergenic 35.0%
CCGACGAATAAAATTTGTCA+CGG - chr1_2:54623451-54623470 None:intergenic 35.0%
! CCGTGACAAATTTTATTCGT+CGG + chr1_2:54623448-54623467 Msa0077670:intron 35.0%
CCCTCAACATTTGATATATG+CGG - chr1_2:54623531-54623550 None:intergenic 35.0%
CCGCATATATCAAATGTTGA+GGG + chr1_2:54623528-54623547 Msa0077670:intron 35.0%
GAGAATGAAGGATGACATAA+AGG + chr1_2:54623813-54623832 Msa0077670:CDS 35.0%
GCACCTATTATTTCCGAAAA+TGG + chr1_2:54623846-54623865 Msa0077670:CDS 35.0%
! GCTCCATTTTCGGAAATAAT+AGG - chr1_2:54623852-54623871 None:intergenic 35.0%
GATCAACTCCTACATAATCA+AGG + chr1_2:54623889-54623908 Msa0077670:CDS 35.0%
CAACATATGATATGTTGGGT+GGG - chr1_2:54623923-54623942 None:intergenic 35.0%
TCAACATATGATATGTTGGG+TGG - chr1_2:54623924-54623943 None:intergenic 35.0%
AAATCACAACAGTAGCATGA+AGG - chr1_2:54624186-54624205 None:intergenic 35.0%
! ACTCTTTGCTAGCTTAGTTA+TGG - chr1_2:54624272-54624291 None:intergenic 35.0%
! TAAGCTAGCAAAGAGTATGA+AGG + chr1_2:54624276-54624295 Msa0077670:intron 35.0%
! AAGCTAGCAAAGAGTATGAA+GGG + chr1_2:54624277-54624296 Msa0077670:intron 35.0%
CAGGAATCATCTATGTTGAT+CGG - chr1_2:54624353-54624372 None:intergenic 35.0%
CGTAGACTTAAAATACAAGC+AGG - chr1_2:54624372-54624391 None:intergenic 35.0%
ATATTTCACAAATGAGGAGG+AGG - chr1_2:54624458-54624477 None:intergenic 35.0%
! CGCAATTAAGAGTATATCCT+TGG - chr1_2:54624654-54624673 None:intergenic 35.0%
GAAAAAAGGGATGAAAAAGG+GGG - chr1_2:54624685-54624704 None:intergenic 35.0%
GGTGATATGACATGCTTTAA+AGG + chr1_2:54624783-54624802 Msa0077670:intron 35.0%
!!! CTGTAAGATTTTGAAACAGC+GGG + chr1_2:54624936-54624955 Msa0077670:intron 35.0%
!! TGATTGGCGGATTTATGAAT+TGG + chr1_2:54625352-54625371 Msa0077670:intron 35.0%
GGAATTCATCATAGGATTAG+CGG + chr1_2:54625700-54625719 Msa0077670:intron 35.0%
GGAATTCATCTTCCATTAGA+AGG + chr1_2:54626725-54626744 Msa0077670:intron 35.0%
! TCCATCTTCAAATTTTCTGC+AGG + chr1_2:54626912-54626931 Msa0077670:intron 35.0%
! CCATCTTCAAATTTTCTGCA+GGG + chr1_2:54626913-54626932 Msa0077670:intron 35.0%
GAAACAAATGAGAAGGTCAT+TGG + chr1_2:54626955-54626974 Msa0077670:exon 35.0%
GAAGGTCATTGGAGAATATA+AGG + chr1_2:54626966-54626985 Msa0077670:three_prime_UTR 35.0%
! TGTTTAGGTCCAGATTTTGA+TGG - chr1_2:54627013-54627032 None:intergenic 35.0%
ATCTGGACCTAAACATAAAG+AGG + chr1_2:54627018-54627037 Msa0077670:three_prime_UTR 35.0%
CTTTCCACCTCTTTATGTTT+AGG - chr1_2:54627028-54627047 None:intergenic 35.0%
CTAAACATAAAGAGGTGGAA+AGG + chr1_2:54627026-54627045 Msa0077670:three_prime_UTR 35.0%
TAAAGAGGTGGAAAGGAATA+TGG + chr1_2:54627033-54627052 Msa0077670:three_prime_UTR 35.0%
AAAGAGGTGGAAAGGAATAT+GGG + chr1_2:54627034-54627053 Msa0077670:three_prime_UTR 35.0%
TCAATGACAAAGCGATATAG+AGG + chr1_2:54627106-54627125 Msa0077670:three_prime_UTR 35.0%
TGATATGCTTTCTATTGCCT+AGG - chr1_2:54627347-54627366 None:intergenic 35.0%
TTCTTGGGATGATCCATTTC+CGG + chr1_2:54621149-54621168 Msa0077670:CDS 40.0%
!! GCACGGTCAAAATATTTTGG+GGG + chr1_2:54621295-54621314 Msa0077670:intron 40.0%
! TTTTCATGTTGCAGGGATGT+AGG + chr1_2:54621579-54621598 Msa0077670:intron 40.0%
! TGCATTTCCCAAGAAGCTTT+TGG - chr1_2:54621619-54621638 None:intergenic 40.0%
AAGAGGGGATTACATAGGAA+AGG - chr1_2:54621696-54621715 None:intergenic 40.0%
CCAAAAAGAGGGGATTACAT+AGG - chr1_2:54621701-54621720 None:intergenic 40.0%
! CCTATGTAATCCCCTCTTTT+TGG + chr1_2:54621698-54621717 Msa0077670:intron 40.0%
TGAAATCTACACATAGCTGC+AGG + chr1_2:54621935-54621954 Msa0077670:intron 40.0%
!!! TTGGGATTTTTTCCCTCTCT+CGG + chr1_2:54622847-54622866 Msa0077670:intron 40.0%
!!! ATTTTTTCCCTCTCTCGGAT+TGG + chr1_2:54622852-54622871 Msa0077670:intron 40.0%
AAACAATCCAATCCGAGAGA+GGG - chr1_2:54622862-54622881 None:intergenic 40.0%
AAAACAATCCAATCCGAGAG+AGG - chr1_2:54622863-54622882 None:intergenic 40.0%
! CATTTTCAGCTATGGTGTAC+GGG + chr1_2:54623047-54623066 Msa0077670:intron 40.0%
TTGACAATGGCTTGAAGTTC+CGG - chr1_2:54623081-54623100 None:intergenic 40.0%
! ACATGTTTCTGTTGCATCCA+TGG + chr1_2:54623101-54623120 Msa0077670:CDS 40.0%
! CTGCTTTGAACGCTATTATC+GGG + chr1_2:54623308-54623327 Msa0077670:intron 40.0%
TTGAACGCTATTATCGGGTA+TGG + chr1_2:54623313-54623332 Msa0077670:intron 40.0%
TGAACGCTATTATCGGGTAT+GGG + chr1_2:54623314-54623333 Msa0077670:intron 40.0%
ATAAAATTTGTCACGGGCAC+GGG - chr1_2:54623444-54623463 None:intergenic 40.0%
CCAGGGATGGCAAAAAAAAA+CGG - chr1_2:54623486-54623505 None:intergenic 40.0%
GCCGCATATATCAAATGTTG+AGG + chr1_2:54623527-54623546 Msa0077670:intron 40.0%
! AGGAAGATCTGCTCCATTTT+CGG - chr1_2:54623862-54623881 None:intergenic 40.0%
AGCTCTACGGAATTGGAATT+TGG - chr1_2:54624019-54624038 None:intergenic 40.0%
AACAAAGAGCTCTACGGAAT+TGG - chr1_2:54624026-54624045 None:intergenic 40.0%
CTCTTCCACAATCAACTCAT+GGG - chr1_2:54624219-54624238 None:intergenic 40.0%
TCTCTTCCACAATCAACTCA+TGG - chr1_2:54624220-54624239 None:intergenic 40.0%
TGCAACACCGTAATATTGGT+TGG + chr1_2:54624998-54625017 Msa0077670:intron 40.0%
TTGGTGTGCTAGATACAGAA+CGG + chr1_2:54625411-54625430 Msa0077670:intron 40.0%
TAGAGCCTAAGCAGATCTAA+TGG + chr1_2:54625527-54625546 Msa0077670:intron 40.0%
CAATGGATATCGTCTGAGTT+TGG + chr1_2:54625861-54625880 Msa0077670:intron 40.0%
TTAATGAAGAGGCAAGCGTA+AGG - chr1_2:54626227-54626246 None:intergenic 40.0%
CATGAGAAAGGTGATGAATG+AGG - chr1_2:54626869-54626888 None:intergenic 40.0%
CCCTGCAGAAAATTTGAAGA+TGG - chr1_2:54626916-54626935 None:intergenic 40.0%
TGGACCTAAACATAAAGAGG+TGG + chr1_2:54627021-54627040 Msa0077670:three_prime_UTR 40.0%
ATGACAAAGCGATATAGAGG+TGG + chr1_2:54627109-54627128 Msa0077670:three_prime_UTR 40.0%
GATATAGAGGTGGAAGGAAA+TGG + chr1_2:54627119-54627138 Msa0077670:three_prime_UTR 40.0%
TTATAGGGTGGAGCCTTTAT+AGG + chr1_2:54627246-54627265 Msa0077670:three_prime_UTR 40.0%
ATGCTTTCTATTGCCTAGGT+AGG - chr1_2:54627343-54627362 None:intergenic 40.0%
GAATTGTAGATCGGACAGAG+AGG - chr1_2:54621085-54621104 None:intergenic 45.0%
GAGTCTCGACAGCAACTTAA+TGG - chr1_2:54621129-54621148 None:intergenic 45.0%
TTGCTGTCGAGACTCTTCTT+GGG + chr1_2:54621134-54621153 Msa0077670:CDS 45.0%
TCGACATCTGAGCAAGTCAT+CGG + chr1_2:54621245-54621264 Msa0077670:intron 45.0%
!! TGATCGCTGGTTTAAAGCCT+TGG + chr1_2:54621873-54621892 Msa0077670:intron 45.0%
!! TGGCTTTGTGTGACTCTTGT+TGG + chr1_2:54622052-54622071 Msa0077670:intron 45.0%
! GTTTTATCTGAGCTCTCTGC+TGG + chr1_2:54622488-54622507 Msa0077670:intron 45.0%
CAGATACGTGACACTGATGA+CGG - chr1_2:54622537-54622556 None:intergenic 45.0%
!! CAAGAGTGGAAAAGGTACCA+TGG - chr1_2:54623121-54623140 None:intergenic 45.0%
TAAAATTTGTCACGGGCACG+GGG - chr1_2:54623443-54623462 None:intergenic 45.0%
CAAAAAAAAACGGTGCACGC+TGG - chr1_2:54623476-54623495 None:intergenic 45.0%
!!! CCGTTTTTTTTTGCCATCCC+TGG + chr1_2:54623483-54623502 Msa0077670:intron 45.0%
! ACTTTTCTTTGGACCAGGGA+TGG - chr1_2:54623499-54623518 None:intergenic 45.0%
! CGCAACTTTTCTTTGGACCA+GGG - chr1_2:54623503-54623522 None:intergenic 45.0%
! ACGCAACTTTTCTTTGGACC+AGG - chr1_2:54623504-54623523 None:intergenic 45.0%
GGTCGTGTTGAAGAGAATGA+AGG + chr1_2:54623801-54623820 Msa0077670:CDS 45.0%
ATGGAGCAGATCTTCCTGTT+TGG + chr1_2:54623865-54623884 Msa0077670:CDS 45.0%
! GTAGGAGTTGATCTCCAAAC+AGG - chr1_2:54623882-54623901 None:intergenic 45.0%
!! AGAGTCCCATGAGTTGATTG+TGG + chr1_2:54624211-54624230 Msa0077670:intron 45.0%
TGTGCTAGATACAGAACGGA+TGG + chr1_2:54625415-54625434 Msa0077670:intron 45.0%
CACGTCCATTAGATCTGCTT+AGG - chr1_2:54625535-54625554 None:intergenic 45.0%
! AGCAGATCTAATGGACGTGA+TGG + chr1_2:54625536-54625555 Msa0077670:intron 45.0%
! GCAGATCTAATGGACGTGAT+GGG + chr1_2:54625537-54625556 Msa0077670:intron 45.0%
!! AATGGACGTGATGGGTCAAA+AGG + chr1_2:54625545-54625564 Msa0077670:intron 45.0%
ATCGTCTGAGTTTGGAGAGT+TGG + chr1_2:54625869-54625888 Msa0077670:intron 45.0%
CATCGAGATAGGAAAGGTTG+TGG + chr1_2:54626017-54626036 Msa0077670:intron 45.0%
CAAAGCGATATAGAGGTGGA+AGG + chr1_2:54627113-54627132 Msa0077670:three_prime_UTR 45.0%
AGGTGGAAGGAAATGGACAT+TGG + chr1_2:54627126-54627145 Msa0077670:three_prime_UTR 45.0%
GGAGCATAACACTGCAACAA+AGG + chr1_2:54627147-54627166 Msa0077670:three_prime_UTR 45.0%
!! AAAGAATTAAAATAAAAAAT+AGG - chr1_2:54624506-54624525 None:intergenic 5.0%
!!! TATTTTTTATTTTAATTCTT+TGG + chr1_2:54624505-54624524 Msa0077670:intron 5.0%
!!! TATAAATTATATTTCTAATT+AGG + chr1_2:54625651-54625670 Msa0077670:intron 5.0%
TTGTAGATCGGACAGAGAGG+AGG - chr1_2:54621082-54621101 None:intergenic 50.0%
GTTGCTGTCGAGACTCTTCT+TGG + chr1_2:54621133-54621152 Msa0077670:CDS 50.0%
ATCGGAGATCCAGTACTCGA+CGG - chr1_2:54621189-54621208 None:intergenic 50.0%
!! GCGCTAGAAGTCGTTTTGCA+CGG + chr1_2:54621278-54621297 Msa0077670:intron 50.0%
TCATGTTGCAGGGATGTAGG+TGG + chr1_2:54621582-54621601 Msa0077670:intron 50.0%
! CATAGTGATGAGGCGTCTCA+TGG + chr1_2:54621911-54621930 Msa0077670:intron 50.0%
! TGGTGTACGGGTTACATCTC+CGG + chr1_2:54623059-54623078 Msa0077670:CDS 50.0%
! GGCTGCACGCAACTTTTCTT+TGG - chr1_2:54623510-54623529 None:intergenic 50.0%
CTCAGGAATTAGGATGGCGT+TGG + chr1_2:54626520-54626539 Msa0077670:intron 50.0%
!! AGGATGGCGTTGGAGTGTTT+TGG + chr1_2:54626530-54626549 Msa0077670:CDS 50.0%
!! GATGATGGTACTGACCAGCA+GGG - chr1_2:54626565-54626584 None:intergenic 50.0%
TCGGACAGAGAGGAGGAAGA+TGG - chr1_2:54621075-54621094 None:intergenic 55.0%
TCCAGTACTCGACGGATGCT+CGG - chr1_2:54621181-54621200 None:intergenic 55.0%
!! GCTGCAGGCTGTTTTCGTGA+TGG + chr1_2:54621950-54621969 Msa0077670:intron 55.0%
TTATCGGGTATGGGTACCCG+CGG + chr1_2:54623323-54623342 Msa0077670:intron 55.0%
TTTGCTGATACCCGTTCCCG+CGG - chr1_2:54623343-54623362 None:intergenic 55.0%
TTTGGCAGTGATCTCCCTGC+TGG + chr1_2:54626548-54626567 Msa0077670:CDS 55.0%
!! GGATGATGGTACTGACCAGC+AGG - chr1_2:54626566-54626585 None:intergenic 55.0%
AGTACTCGACGGATGCTCGG+AGG - chr1_2:54621178-54621197 None:intergenic 60.0%
TCCGAGCATCCGTCGAGTAC+TGG + chr1_2:54621177-54621196 Msa0077670:CDS 60.0%
TATCGGGTATGGGTACCCGC+GGG + chr1_2:54623324-54623343 Msa0077670:intron 60.0%
TTGCTGATACCCGTTCCCGC+GGG - chr1_2:54623342-54623361 None:intergenic 60.0%
! GCACGGGGCTGGTAGCTAAA+CGG - chr1_2:54623428-54623447 None:intergenic 60.0%
TGCTCGGAGGTCGCCGGAAA+TGG - chr1_2:54621165-54621184 None:intergenic 65.0%
GGTATGGGTACCCGCGGGAA+CGG + chr1_2:54623329-54623348 Msa0077670:intron 65.0%
GTATGGGTACCCGCGGGAAC+GGG + chr1_2:54623330-54623349 Msa0077670:intron 65.0%
ATTTGTCACGGGCACGGGGC+TGG - chr1_2:54623439-54623458 None:intergenic 65.0%
GACGGATGCTCGGAGGTCGC+CGG - chr1_2:54621171-54621190 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54621063 54627378 54621063 ID=Msa0077670;Name=Msa0077670
chr1_2 mRNA 54621063 54627378 54621063 ID=Msa0077670-mRNA-1;Parent=Msa0077670;Name=Msa0077670-mRNA-1;_AED=0.40;_eAED=0.51;_QI=0|0.4|0.66|1|0.8|0.66|6|413|154
chr1_2 exon 54621063 54621224 54621063 ID=Msa0077670-mRNA-1:exon:16955;Parent=Msa0077670-mRNA-1
chr1_2 exon 54621593 54621639 54621593 ID=Msa0077670-mRNA-1:exon:16956;Parent=Msa0077670-mRNA-1
chr1_2 exon 54623056 54623122 54623056 ID=Msa0077670-mRNA-1:exon:16957;Parent=Msa0077670-mRNA-1
chr1_2 exon 54623799 54623910 54623799 ID=Msa0077670-mRNA-1:exon:16958;Parent=Msa0077670-mRNA-1
chr1_2 exon 54626525 54626569 54626525 ID=Msa0077670-mRNA-1:exon:16959;Parent=Msa0077670-mRNA-1
chr1_2 exon 54626934 54627378 54626934 ID=Msa0077670-mRNA-1:exon:16960;Parent=Msa0077670-mRNA-1
chr1_2 CDS 54621063 54621224 54621063 ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2 CDS 54621593 54621639 54621593 ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2 CDS 54623056 54623122 54623056 ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2 CDS 54623799 54623910 54623799 ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2 CDS 54626525 54626569 54626525 ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2 CDS 54626934 54626965 54626934 ID=Msa0077670-mRNA-1:cds;Parent=Msa0077670-mRNA-1
chr1_2 three_prime_UTR 54626966 54627378 54626966 ID=Msa0077670-mRNA-1:three_prime_utr;Parent=Msa0077670-mRNA-1
Gene Sequence

>Msa0077670

ATGTTAGCACCATCTTCCTCCTCTCTGTCCGATCTACAATTCTATCCGACTCATTTTTCGAAACCATTAAGTTGCTGTCGAGACTCTTCTTGGGATGATCCATTTCCGGCGACCTCCGAGCATCCGTCGAGTACTGGATCTCCGATTCTCATAAAAAAAACCGGATGTAGGTGGTTTAAATTGTGCCAAAAGCTTCTTGGGAAATGCAACTATGGTGTACGGGTTACATCTCCGGAACTTCAAGCCATTGTCAAACATGTTTCTGTTGCATCCATGGAGGTCGTGTTGAAGAGAATGAAGGATGACATAAAGGAGATAAGATGGCACCTATTATTTCCGAAAATGGAGCAGATCTTCCTGTTTGGAGATCAACTCCTACATAATCAAGGAATTAGGATGGCGTTGGAGTGTTTTGGCAGTGATCTCCCTGCTGGGAATACACAAAAAAAAAAAGGAAACAAATGA
Protein sequence

>Msa0077670

MLAPSSSSLSDLQFYPTHFSKPLSCCRDSSWDDPFPATSEHPSSTGSPILIKKTGCRWFKLCQKLLGKCNYGVRVTSPELQAIVKHVSVASMEVVLKRMKDDIKEIRWHLLFPKMEQIFLFGDQLLHNQGIRMALECFGSDLPAGNTQKKKGNK*