Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280730 | KEH37161.1 | 96.296 | 108 | 4 | 0 | 116 | 223 | 33 | 140 | 1.69e-70 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0280730 | 0.802024 | 6.826961e-49 | -8.615850e-47 |
| Msa0027540 | Msa0280730 | 0.805811 | 1.114897e-49 | -8.615850e-47 |
| Msa0030380 | Msa0280730 | 0.825063 | 5.748351e-54 | -8.615850e-47 |
| Msa0043940 | Msa0280730 | 0.805881 | 1.077532e-49 | -8.615850e-47 |
| Msa0044710 | Msa0280730 | 0.830818 | 2.370243e-55 | -8.615850e-47 |
| Msa0050720 | Msa0280730 | 0.808775 | 2.623536e-50 | -8.615850e-47 |
| Msa0075310 | Msa0280730 | 0.803454 | 3.459157e-49 | -8.615850e-47 |
| Msa0084680 | Msa0280730 | 0.805767 | 1.138786e-49 | -8.615850e-47 |
| Msa0092710 | Msa0280730 | 0.810857 | 9.358643e-51 | -8.615850e-47 |
| Msa0134010 | Msa0280730 | 0.813653 | 2.296083e-51 | -8.615850e-47 |
| Msa0143080 | Msa0280730 | 0.806566 | 7.730233e-50 | -8.615850e-47 |
| Msa0167210 | Msa0280730 | -0.803589 | 3.243611e-49 | -8.615850e-47 |
| Msa0168640 | Msa0280730 | -0.807170 | 5.762042e-50 | -8.615850e-47 |
| Msa0169620 | Msa0280730 | 0.801315 | 9.543400e-49 | -8.615850e-47 |
| Msa0172960 | Msa0280730 | -0.801856 | 7.391041e-49 | -8.615850e-47 |
| Msa0173740 | Msa0280730 | 0.826126 | 3.218459e-54 | -8.615850e-47 |
| Msa0173820 | Msa0280730 | 0.835295 | 1.823936e-56 | -8.615850e-47 |
| Msa0173830 | Msa0280730 | 0.828385 | 9.256725e-55 | -8.615850e-47 |
| Msa0182930 | Msa0280730 | 0.810987 | 8.771693e-51 | -8.615850e-47 |
| Msa0183620 | Msa0280730 | 0.812044 | 5.168555e-51 | -8.615850e-47 |
| Msa0200010 | Msa0280730 | 0.988792 | 1.982089e-175 | -8.615850e-47 |
| Msa0236980 | Msa0280730 | 0.806323 | 8.698676e-50 | -8.615850e-47 |
| Msa0238250 | Msa0280730 | -0.814452 | 1.529858e-51 | -8.615850e-47 |
| Msa0242520 | Msa0280730 | 0.894248 | 2.947305e-75 | -8.615850e-47 |
| Msa0244270 | Msa0280730 | 0.822888 | 1.861052e-53 | -8.615850e-47 |
| Msa0259860 | Msa0280730 | -0.808083 | 3.687069e-50 | -8.615850e-47 |
| Msa0275030 | Msa0280730 | 0.803541 | 3.318485e-49 | -8.615850e-47 |
| Msa0280730 | Msa0288240 | 0.807263 | 5.505963e-50 | -8.615850e-47 |
| Msa0280730 | Msa0318250 | 0.809177 | 2.152536e-50 | -8.615850e-47 |
| Msa0280730 | Msa0319970 | 0.842796 | 2.077137e-58 | -8.615850e-47 |
| Msa0280730 | Msa0326670 | 0.804227 | 2.389668e-49 | -8.615850e-47 |
| Msa0280730 | Msa0344640 | 0.808595 | 2.866658e-50 | -8.615850e-47 |
| Msa0280730 | Msa0364710 | 0.803183 | 3.936971e-49 | -8.615850e-47 |
| Msa0280730 | Msa0376450 | -0.805416 | 1.348857e-49 | -8.615850e-47 |
| Msa0280730 | Msa0376510 | 0.814244 | 1.700082e-51 | -8.615850e-47 |
| Msa0280730 | Msa0380040 | 0.805983 | 1.025567e-49 | -8.615850e-47 |
| Msa0280730 | Msa0416890 | -0.807984 | 3.868937e-50 | -8.615850e-47 |
| Msa0280730 | Msa0425050 | 0.816693 | 4.848491e-52 | -8.615850e-47 |
| Msa0280730 | Msa0429290 | 0.808487 | 3.023429e-50 | -8.615850e-47 |
| Msa0280730 | Msa0440130 | -0.821418 | 4.081085e-53 | -8.615850e-47 |
| Msa0280730 | Msa0465790 | 0.801293 | 9.641398e-49 | -8.615850e-47 |
| Msa0280730 | Msa0465800 | 0.804610 | 1.988567e-49 | -8.615850e-47 |
| Msa0280730 | Msa0469970 | 0.819252 | 1.280758e-52 | -8.615850e-47 |
| Msa0280730 | Msa0471720 | -0.807210 | 5.649892e-50 | -8.615850e-47 |
| Msa0280730 | Msa0472740 | 0.836900 | 7.133945e-57 | -8.615850e-47 |
| Msa0280730 | Msa0475580 | 0.815158 | 1.066736e-51 | -8.615850e-47 |
| Msa0280730 | Msa0519220 | 0.807751 | 4.336491e-50 | -8.615850e-47 |
| Msa0280730 | Msa0532840 | 0.814816 | 1.270669e-51 | -8.615850e-47 |
| Msa0280730 | Msa0533010 | 0.818123 | 2.310377e-52 | -8.615850e-47 |
| Msa0280730 | Msa0553220 | -0.800576 | 1.350629e-48 | -8.615850e-47 |
| Msa0280730 | Msa0583740 | 0.812621 | 3.865650e-51 | -8.615850e-47 |
| Msa0280730 | Msa0590680 | 0.805442 | 1.332049e-49 | -8.615850e-47 |
| Msa0280730 | Msa0607340 | -0.803803 | 2.928135e-49 | -8.615850e-47 |
| Msa0280730 | Msa0618010 | 0.812057 | 5.133499e-51 | -8.615850e-47 |
| Msa0280730 | Msa0642650 | 0.811606 | 6.435080e-51 | -8.615850e-47 |
| Msa0280730 | Msa0667970 | 0.802079 | 6.650213e-49 | -8.615850e-47 |
| Msa0280730 | Msa0681890 | 0.803974 | 2.697770e-49 | -8.615850e-47 |
| Msa0280730 | Msa0717920 | -0.804779 | 1.833623e-49 | -8.615850e-47 |
| Msa0280730 | Msa0725920 | 0.820420 | 6.923348e-53 | -8.615850e-47 |
| Msa0280730 | Msa0734660 | 0.819861 | 9.296127e-53 | -8.615850e-47 |
| Msa0280730 | Msa0776220 | 0.813971 | 1.953531e-51 | -8.615850e-47 |
| Msa0280730 | Msa0787750 | 0.808779 | 2.618793e-50 | -8.615850e-47 |
| Msa0280730 | Msa0813670 | 0.802398 | 5.718133e-49 | -8.615850e-47 |
| Msa0280730 | Msa0813720 | 0.836594 | 8.538810e-57 | -8.615850e-47 |
| Msa0280730 | Msa0846030 | 0.833578 | 4.920094e-56 | -8.615850e-47 |
| Msa0280730 | Msa0854120 | 0.804144 | 2.487314e-49 | -8.615850e-47 |
| Msa0280730 | Msa0967650 | -0.807433 | 5.067428e-50 | -8.615850e-47 |
| Msa0280730 | Msa1030870 | 0.817925 | 2.560046e-52 | -8.615850e-47 |
| Msa0280730 | Msa1044340 | 0.802766 | 4.801987e-49 | -8.615850e-47 |
| Msa0280730 | Msa1072460 | -0.806796 | 6.913653e-50 | -8.615850e-47 |
| Msa0280730 | Msa1134400 | 0.809014 | 2.332637e-50 | -8.615850e-47 |
| Msa0280730 | Msa1157730 | 0.846127 | 2.640296e-59 | -8.615850e-47 |
| Msa0280730 | Msa1177240 | 0.813248 | 2.818172e-51 | -8.615850e-47 |
| Msa0280730 | Msa1223840 | 0.803805 | 2.924956e-49 | -8.615850e-47 |
| Msa0280730 | Msa1224670 | 0.825848 | 3.746703e-54 | -8.615850e-47 |
| Msa0280730 | Msa1229700 | 0.827434 | 1.567512e-54 | -8.615850e-47 |
| Msa0280730 | Msa1249870 | 0.805653 | 1.203484e-49 | -8.615850e-47 |
| Msa0280730 | Msa1260130 | 0.818524 | 1.874505e-52 | -8.615850e-47 |
| Msa0280730 | Msa1263030 | 0.815430 | 9.280556e-52 | -8.615850e-47 |
| Msa0280730 | Msa1310290 | 0.832777 | 7.787146e-56 | -8.615850e-47 |
| Msa0280730 | Msa1317030 | 0.803799 | 2.933431e-49 | -8.615850e-47 |
| Msa0280730 | Msa1336950 | 0.828060 | 1.109064e-54 | -8.615850e-47 |
| Msa0280730 | Msa1337090 | 0.805572 | 1.251495e-49 | -8.615850e-47 |
| Msa0280730 | Msa1373510 | 0.806069 | 9.836223e-50 | -8.615850e-47 |
| Msa0280730 | Msa1378470 | 0.815787 | 7.730939e-52 | -8.615850e-47 |
| Msa0280730 | Msa1403930 | -0.819623 | 1.053787e-52 | -8.615850e-47 |
| Msa0280730 | Msa1439120 | 0.806811 | 6.862116e-50 | -8.615850e-47 |
| Msa0280730 | Msa1440610 | 0.811859 | 5.671353e-51 | -8.615850e-47 |
| Msa0280730 | Msa1444450 | 0.801788 | 7.632556e-49 | -8.615850e-47 |
| Msa0280730 | Msa1449880 | 0.818683 | 1.724778e-52 | -8.615850e-47 |
| Msa0280730 | Msa1453620 | 0.800739 | 1.251405e-48 | -8.615850e-47 |
| Msa0280730 | Msa1455660 | 0.806468 | 8.108456e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280730 | MtrunA17_Chr2g0294771 | 97.802 | 91 | 2 | 0 | 133 | 223 | 1 | 91 | 3.88e-64 | 194 |
| Msa0280730 | MtrunA17_Chr5g0417751 | 47.748 | 111 | 47 | 3 | 116 | 219 | 1 | 107 | 2.14e-22 | 89.0 |
| Msa0280730 | MtrunA17_Chr2g0312591 | 65.517 | 58 | 17 | 1 | 154 | 211 | 36 | 90 | 1.21e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280730 | AT4G16146.1 | 72.368 | 76 | 21 | 0 | 148 | 223 | 18 | 93 | 3.29e-35 | 120 |
| Msa0280730 | AT1G69510.3 | 61.842 | 76 | 26 | 1 | 148 | 223 | 26 | 98 | 1.87e-22 | 89.4 |
| Msa0280730 | AT1G69510.2 | 61.842 | 76 | 26 | 1 | 148 | 223 | 26 | 98 | 1.87e-22 | 89.4 |
| Msa0280730 | AT1G69510.1 | 61.842 | 76 | 26 | 1 | 148 | 223 | 26 | 98 | 1.87e-22 | 89.4 |
| Msa0280730 | AT5G64130.1 | 52.381 | 84 | 35 | 2 | 130 | 211 | 7 | 87 | 1.11e-18 | 79.0 |
| Msa0280730 | AT5G64130.3 | 40.367 | 109 | 35 | 3 | 130 | 211 | 7 | 112 | 1.13e-13 | 66.2 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGAGTCCGTCCTAAATT+TGG | 0.252184 | 2_3:-15632428 | None:intergenic |
| ATCTTCTCTTCGCTTGATTT+TGG | 0.271225 | 2_3:+15629572 | Msa0280730:CDS |
| GTTATGTACCTCAACGTTAT+TGG | 0.287248 | 2_3:-15629789 | None:intergenic |
| AAAATATGTACCTGTAGTTT+TGG | 0.291948 | 2_3:-15631893 | None:intergenic |
| GATGTGCATGCAGGTCTTCT+TGG | 0.315613 | 2_3:-15632054 | None:intergenic |
| ATGTGCATGCAGGTCTTCTT+GGG | 0.321512 | 2_3:-15632053 | None:intergenic |
| AGAGAAGATGCTATAGTAAA+TGG | 0.328525 | 2_3:-15629558 | None:intergenic |
| CCAAAACGTGGGGTTGAACT+TGG | 0.335529 | 2_3:+15632386 | Msa0280730:three_prime_UTR |
| AGAAGACCTGCATGCACATC+TGG | 0.388554 | 2_3:+15632057 | Msa0280730:CDS |
| CCAAGTTCAACCCCACGTTT+TGG | 0.389622 | 2_3:-15632386 | None:intergenic |
| AACAACATAGAAAATAAAAT+AGG | 0.392062 | 2_3:-15629497 | None:intergenic |
| AAAAGCATCAAGTGAACTAA+TGG | 0.409581 | 2_3:-15632294 | None:intergenic |
| AATGTGGTAGATCCAAATTT+AGG | 0.416458 | 2_3:+15632416 | Msa0280730:three_prime_UTR |
| ATGTAATATATCTTAGCATT+TGG | 0.417547 | 2_3:+15629316 | Msa0280730:CDS |
| ACATCTGTGGGCAAGAAGTA+TGG | 0.427721 | 2_3:+15631510 | Msa0280730:CDS |
| TACTCTCCCTGCAAAACAAT+TGG | 0.431697 | 2_3:-15632190 | None:intergenic |
| CTAGGAAAGAAGCTACAAAA+TGG | 0.435486 | 2_3:-15629264 | None:intergenic |
| GACCCTGCGGCCAAAACTAC+AGG | 0.475768 | 2_3:+15631883 | Msa0280730:CDS |
| AAATCATATATATGAATCAC+TGG | 0.499705 | 2_3:+15632087 | Msa0280730:three_prime_UTR |
| TAATCTCTACAGCAAGGTGC+TGG | 0.502471 | 2_3:+15631830 | Msa0280730:intron |
| CAAAAGCAAGATGAAAGATA+AGG | 0.509914 | 2_3:-15629622 | None:intergenic |
| CAAAACGTGGGGTTGAACTT+GGG | 0.522746 | 2_3:+15632387 | Msa0280730:three_prime_UTR |
| GAAGAGAGGTTTGAGTGAGA+AGG | 0.524064 | 2_3:-15629362 | None:intergenic |
| AGGCTTACTTTGGATATCAA+AGG | 0.525503 | 2_3:-15631555 | None:intergenic |
| AAATTATAGTCAACATCTGT+GGG | 0.528268 | 2_3:+15631498 | Msa0280730:intron |
| TGAACTTGGGATTTGAAATG+TGG | 0.551105 | 2_3:+15632400 | Msa0280730:three_prime_UTR |
| ATTACCTTGTGGTGGGAGCA+AGG | 0.568180 | 2_3:-15629442 | None:intergenic |
| AATCAACCAGATGTGCATGC+AGG | 0.569567 | 2_3:-15632063 | None:intergenic |
| TAAATTATAGTCAACATCTG+TGG | 0.573145 | 2_3:+15631497 | Msa0280730:intron |
| TGTTGAATAGGTAAAGGAGA+TGG | 0.580212 | 2_3:+15629736 | Msa0280730:intron |
| CCATCTATTTGACCAAAACG+TGG | 0.581829 | 2_3:+15632374 | Msa0280730:three_prime_UTR |
| TGTTGATAATTACCTTGTGG+TGG | 0.586982 | 2_3:-15629450 | None:intergenic |
| AGCAGACTGGGCATTATGCA+AGG | 0.588087 | 2_3:+15631727 | Msa0280730:CDS |
| AAAGTAGAGACAATGAAGAG+AGG | 0.589022 | 2_3:-15629376 | None:intergenic |
| CATCTATTTGACCAAAACGT+GGG | 0.591595 | 2_3:+15632375 | Msa0280730:three_prime_UTR |
| CTGTGGGCAAGAAGTATGGT+GGG | 0.597221 | 2_3:+15631514 | Msa0280730:CDS |
| TAATTATATTATACGAGGAG+AGG | 0.605739 | 2_3:-15629287 | None:intergenic |
| ATATTATACGAGGAGAGGCT+AGG | 0.606715 | 2_3:-15629282 | None:intergenic |
| TGTGCATGCAGGTCTTCTTG+GGG | 0.609417 | 2_3:-15632052 | None:intergenic |
| TCTGTGGGCAAGAAGTATGG+TGG | 0.617985 | 2_3:+15631513 | Msa0280730:CDS |
| GTTGATAATTACCTTGTGGT+GGG | 0.633369 | 2_3:-15629449 | None:intergenic |
| TCTACCTTGCTCCCACCACA+AGG | 0.640342 | 2_3:+15629438 | Msa0280730:CDS |
| TATAATAATTATATTATACG+AGG | 0.643160 | 2_3:-15629292 | None:intergenic |
| TGGTAGATCCAAATTTAGGA+CGG | 0.646366 | 2_3:+15632420 | Msa0280730:three_prime_UTR |
| ATATATCTTAGCATTTGGTG+TGG | 0.651457 | 2_3:+15629321 | Msa0280730:CDS |
| ATCTATTTGACCAAAACGTG+GGG | 0.659449 | 2_3:+15632376 | Msa0280730:three_prime_UTR |
| GTGCATGCAGGTCTTCTTGG+GGG | 0.664744 | 2_3:-15632051 | None:intergenic |
| TTATGCTGCCAATAACGTTG+AGG | 0.670547 | 2_3:+15629781 | Msa0280730:CDS |
| TGATGTTGATAATTACCTTG+TGG | 0.710613 | 2_3:-15629453 | None:intergenic |
| CAGCAGCCGTAGAGACCCTG+CGG | 0.737276 | 2_3:+15631870 | Msa0280730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATTATATTATACG+AGG | - | chr2_3:15629295-15629314 | None:intergenic | 10.0% |
| !! | ATATTTAATGTGAAAATATA+AGG | - | chr2_3:15629897-15629916 | None:intergenic | 10.0% |
| !!! | ATAAAGCATTTTTAAAATTA+AGG | + | chr2_3:15630496-15630515 | Msa0280730:intron | 10.0% |
| !!! | ATTTTTAAAATTAAGGAAAA+AGG | + | chr2_3:15630503-15630522 | Msa0280730:intron | 10.0% |
| !!! | TTTTAACACAAAAAAAAAAA+TGG | - | chr2_3:15631679-15631698 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTGTTAAAA+AGG | + | chr2_3:15631679-15631698 | Msa0280730:intron | 10.0% |
| !!! | AATATAGATATATAATTTGT+TGG | + | chr2_3:15631803-15631822 | Msa0280730:intron | 10.0% |
| !! | TAAAAATAAAAAAAAAACAG+AGG | - | chr2_3:15631991-15632010 | None:intergenic | 10.0% |
| !!! | TACTTTTTATCTTTTTTCTT+TGG | + | chr2_3:15629393-15629412 | Msa0280730:CDS | 15.0% |
| !! | AACAACATAGAAAATAAAAT+AGG | - | chr2_3:15629500-15629519 | None:intergenic | 15.0% |
| !! | ATTGATTAATCTTCATTAAA+TGG | + | chr2_3:15629696-15629715 | Msa0280730:intron | 15.0% |
| !! | TGAAAAATATTTCATGTATA+TGG | - | chr2_3:15629867-15629886 | None:intergenic | 15.0% |
| !! | TTTAGTTGTACAATATATAA+TGG | - | chr2_3:15629924-15629943 | None:intergenic | 15.0% |
| !!! | TAAATGGTAATGAAAATTAA+AGG | + | chr2_3:15630025-15630044 | Msa0280730:intron | 15.0% |
| !! | ATCCTTATGTAAAAAAATTA+TGG | - | chr2_3:15631244-15631263 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAATAACAGTCAA+TGG | - | chr2_3:15631346-15631365 | None:intergenic | 15.0% |
| !! | ATTCAGTATTATAAAAGTTA+GGG | - | chr2_3:15631430-15631449 | None:intergenic | 15.0% |
| !! | TATTCAGTATTATAAAAGTT+AGG | - | chr2_3:15631431-15631450 | None:intergenic | 15.0% |
| !! | AAATCAAAAAGAAATTGAAA+TGG | - | chr2_3:15632344-15632363 | None:intergenic | 15.0% |
| !!! | ACTTCAAATAAATTTTACTT+AGG | + | chr2_3:15632460-15632479 | Msa0280730:three_prime_UTR | 15.0% |
| !! | ATGTAATATATCTTAGCATT+TGG | + | chr2_3:15629316-15629335 | Msa0280730:CDS | 20.0% |
| !! | CACTTATATGCTATAAAAAT+TGG | + | chr2_3:15629522-15629541 | Msa0280730:CDS | 20.0% |
| !! | TATGCTATAAAAATTGGATA+TGG | + | chr2_3:15629528-15629547 | Msa0280730:CDS | 20.0% |
| !!! | TTTGATTTGTTTTGTTGAAT+AGG | + | chr2_3:15629724-15629743 | Msa0280730:intron | 20.0% |
| !!! | AATCCTCTAAAAAAAAATGT+AGG | - | chr2_3:15630345-15630364 | None:intergenic | 20.0% |
| !! | GTAGGTGTAAATTAATATTA+AGG | - | chr2_3:15630412-15630431 | None:intergenic | 20.0% |
| !!! | TTTTAGCATGAAGATATTTT+TGG | + | chr2_3:15630534-15630553 | Msa0280730:intron | 20.0% |
| !!! | TTTAGCATGAAGATATTTTT+GGG | + | chr2_3:15630535-15630554 | Msa0280730:intron | 20.0% |
| !! | TTATATATAGAAAGAAAGCA+AGG | - | chr2_3:15630746-15630765 | None:intergenic | 20.0% |
| !! | ATAATTTCTTATGTGTAGTA+GGG | - | chr2_3:15630806-15630825 | None:intergenic | 20.0% |
| !! | TGATTAAATCAAAGTAGATT+AGG | + | chr2_3:15630884-15630903 | Msa0280730:intron | 20.0% |
| !! | TATGGTAAAAGAATTAAGAA+CGG | + | chr2_3:15631006-15631025 | Msa0280730:intron | 20.0% |
| !!! | AATGTTACACAGTTTTTTTA+GGG | - | chr2_3:15631219-15631238 | None:intergenic | 20.0% |
| !!! | CTCCATAATTTTTTTACATA+AGG | + | chr2_3:15631239-15631258 | Msa0280730:intron | 20.0% |
| !!! | GTTCTTTTATTTCTTTTTGT+TGG | + | chr2_3:15631457-15631476 | Msa0280730:intron | 20.0% |
| !!! | TGTTGGAAATAACTTTTTTT+TGG | + | chr2_3:15631474-15631493 | Msa0280730:intron | 20.0% |
| !!! | TAAATGTTGTTTTTCATCAT+AGG | - | chr2_3:15631578-15631597 | None:intergenic | 20.0% |
| !! | TGTTAAAAAGGATAATGAAA+GGG | + | chr2_3:15631691-15631710 | Msa0280730:intron | 20.0% |
| !! | AAATCATATATATGAATCAC+TGG | + | chr2_3:15632087-15632106 | Msa0280730:three_prime_UTR | 20.0% |
| !! | AAATTTCATTATGTTCTAGT+TGG | + | chr2_3:15632257-15632276 | Msa0280730:intron | 20.0% |
| !!! | TCAATTTCTTTTTGATTTCA+AGG | + | chr2_3:15632346-15632365 | Msa0280730:three_prime_UTR | 20.0% |
| ! | TAATTATATTATACGAGGAG+AGG | - | chr2_3:15629290-15629309 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTGAATAGGTAA+AGG | + | chr2_3:15629730-15629749 | Msa0280730:intron | 25.0% |
| !! | AAACAAAATAGATGAGTTGA+GGG | - | chr2_3:15629819-15629838 | None:intergenic | 25.0% |
| ! | AAAACAAAATAGATGAGTTG+AGG | - | chr2_3:15629820-15629839 | None:intergenic | 25.0% |
| ! | TCTTGATTGCAATGTTTAAA+TGG | + | chr2_3:15630009-15630028 | Msa0280730:intron | 25.0% |
| !!! | TAGGCTTTCTGAAATTATAT+TGG | + | chr2_3:15630172-15630191 | Msa0280730:intron | 25.0% |
| ! | TCATTTATTTATTGGACACA+TGG | - | chr2_3:15630288-15630307 | None:intergenic | 25.0% |
| !!! | TGACCTACATTTTTTTTTAG+AGG | + | chr2_3:15630339-15630358 | Msa0280730:intron | 25.0% |
| ! | TACAATGTACATGTGTATTT+AGG | - | chr2_3:15630374-15630393 | None:intergenic | 25.0% |
| ! | TTTCTAACCGACAATTTAAT+TGG | - | chr2_3:15630564-15630583 | None:intergenic | 25.0% |
| ! | AGAAAGCAAGGATTAATTAT+TGG | - | chr2_3:15630734-15630753 | None:intergenic | 25.0% |
| ! | CATAATTTCTTATGTGTAGT+AGG | - | chr2_3:15630807-15630826 | None:intergenic | 25.0% |
| ! | CTACTACACATAAGAAATTA+TGG | + | chr2_3:15630805-15630824 | Msa0280730:intron | 25.0% |
| ! | AAGTAGATTAGGTTCAAATT+AGG | + | chr2_3:15630895-15630914 | Msa0280730:intron | 25.0% |
| ! | TTCTCATTTGACTAATTCTA+GGG | - | chr2_3:15630925-15630944 | None:intergenic | 25.0% |
| ! | ATTCTCATTTGACTAATTCT+AGG | - | chr2_3:15630926-15630945 | None:intergenic | 25.0% |
| ! | ATGGTAAAAGAATTAAGAAC+GGG | + | chr2_3:15631007-15631026 | Msa0280730:intron | 25.0% |
| !! | TTGTCGTTTCAAAAAACAAA+AGG | + | chr2_3:15631092-15631111 | Msa0280730:intron | 25.0% |
| ! | AAGGTCACTAAAAAATCATA+TGG | + | chr2_3:15631111-15631130 | Msa0280730:intron | 25.0% |
| ! | AGGTCACTAAAAAATCATAT+GGG | + | chr2_3:15631112-15631131 | Msa0280730:intron | 25.0% |
| ! | AAGCAAATTAGTAGATCATA+AGG | + | chr2_3:15631159-15631178 | Msa0280730:intron | 25.0% |
| !!! | GAATGTTACACAGTTTTTTT+AGG | - | chr2_3:15631220-15631239 | None:intergenic | 25.0% |
| !! | ATCCAAATGCATTTTAAATG+AGG | + | chr2_3:15631262-15631281 | Msa0280730:intron | 25.0% |
| ! | TATCACATTTATTCAGTCAA+TGG | - | chr2_3:15631373-15631392 | None:intergenic | 25.0% |
| !! | ATAGTCTTGAATTTATCTTG+TGG | + | chr2_3:15631390-15631409 | Msa0280730:intron | 25.0% |
| ! | TAAATTATAGTCAACATCTG+TGG | + | chr2_3:15631497-15631516 | Msa0280730:intron | 25.0% |
| ! | AAATTATAGTCAACATCTGT+GGG | + | chr2_3:15631498-15631517 | Msa0280730:intron | 25.0% |
| !!! | ATATCAAAGGCTTTTTCTTT+GGG | - | chr2_3:15631545-15631564 | None:intergenic | 25.0% |
| ! | GTGTTAAAAAGGATAATGAA+AGG | + | chr2_3:15631690-15631709 | Msa0280730:intron | 25.0% |
| !! | AAAATATGTACCTGTAGTTT+TGG | - | chr2_3:15631896-15631915 | None:intergenic | 25.0% |
| ! | AAAAAAAAACAGAGGAAAAG+TGG | - | chr2_3:15631983-15632002 | None:intergenic | 25.0% |
| ! | ATATATCTTAGCATTTGGTG+TGG | + | chr2_3:15629321-15629340 | Msa0280730:CDS | 30.0% |
| !! | TGATGTTGATAATTACCTTG+TGG | - | chr2_3:15629456-15629475 | None:intergenic | 30.0% |
| AGAGAAGATGCTATAGTAAA+TGG | - | chr2_3:15629561-15629580 | None:intergenic | 30.0% | |
| CAAAAGCAAGATGAAAGATA+AGG | - | chr2_3:15629625-15629644 | None:intergenic | 30.0% | |
| !! | TATCTTTCATCTTGCTTTTG+TGG | + | chr2_3:15629625-15629644 | Msa0280730:CDS | 30.0% |
| !! | ATCTTTCATCTTGCTTTTGT+GGG | + | chr2_3:15629626-15629645 | Msa0280730:CDS | 30.0% |
| ! | GATGAAAAAAAAGAGTACGT+TGG | - | chr2_3:15630101-15630120 | None:intergenic | 30.0% |
| ! | CAATTGAAGTACTAAGTACA+TGG | - | chr2_3:15630133-15630152 | None:intergenic | 30.0% |
| ! | TATATTGGTTGTCTAGTTTC+TGG | + | chr2_3:15630187-15630206 | Msa0280730:intron | 30.0% |
| ATACACATGTACATTGTAGA+AGG | + | chr2_3:15630376-15630395 | Msa0280730:intron | 30.0% | |
| TACACATGTACATTGTAGAA+GGG | + | chr2_3:15630377-15630396 | Msa0280730:intron | 30.0% | |
| TGGGAATCCAATTAAATTGT+CGG | + | chr2_3:15630554-15630573 | Msa0280730:intron | 30.0% | |
| TCACTAAAAAATCATATGGG+TGG | + | chr2_3:15631115-15631134 | Msa0280730:intron | 30.0% | |
| CACTAAAAAATCATATGGGT+GGG | + | chr2_3:15631116-15631135 | Msa0280730:intron | 30.0% | |
| ! | TGCCTCATTTAAAATGCATT+TGG | - | chr2_3:15631267-15631286 | None:intergenic | 30.0% |
| AGTCAATGGTTGTTATATAG+TGG | - | chr2_3:15631332-15631351 | None:intergenic | 30.0% | |
| TCTTGAATTTATCTTGTGGT+TGG | + | chr2_3:15631394-15631413 | Msa0280730:intron | 30.0% | |
| !! | GATATCAAAGGCTTTTTCTT+TGG | - | chr2_3:15631546-15631565 | None:intergenic | 30.0% |
| ! | TTTTCATCATAGGCTTACTT+TGG | - | chr2_3:15631568-15631587 | None:intergenic | 30.0% |
| !!! | ATTTTTTGATTCAGCAGACT+GGG | + | chr2_3:15631715-15631734 | Msa0280730:CDS | 30.0% |
| AGAGGAAAAGTGGATAAATA+AGG | - | chr2_3:15631973-15631992 | None:intergenic | 30.0% | |
| !! | AAAAGCATCAAGTGAACTAA+TGG | - | chr2_3:15632297-15632316 | None:intergenic | 30.0% |
| !! | CACTTGATGCTTTTGATTAT+TGG | + | chr2_3:15632303-15632322 | Msa0280730:three_prime_UTR | 30.0% |
| AATGTGGTAGATCCAAATTT+AGG | + | chr2_3:15632416-15632435 | Msa0280730:three_prime_UTR | 30.0% | |
| CTAGGAAAGAAGCTACAAAA+TGG | - | chr2_3:15629267-15629286 | None:intergenic | 35.0% | |
| AAAGTAGAGACAATGAAGAG+AGG | - | chr2_3:15629379-15629398 | None:intergenic | 35.0% | |
| !! | GTTGATAATTACCTTGTGGT+GGG | - | chr2_3:15629452-15629471 | None:intergenic | 35.0% |
| !! | TGTTGATAATTACCTTGTGG+TGG | - | chr2_3:15629453-15629472 | None:intergenic | 35.0% |
| ! | ATCTTCTCTTCGCTTGATTT+TGG | + | chr2_3:15629572-15629591 | Msa0280730:CDS | 35.0% |
| TGTTGAATAGGTAAAGGAGA+TGG | + | chr2_3:15629736-15629755 | Msa0280730:intron | 35.0% | |
| GTTATGTACCTCAACGTTAT+TGG | - | chr2_3:15629792-15629811 | None:intergenic | 35.0% | |
| ! | AAATAGATGAGTTGAGGGTT+AGG | - | chr2_3:15629814-15629833 | None:intergenic | 35.0% |
| !! | CATTTTAATCTCCTCTAACG+TGG | + | chr2_3:15629970-15629989 | Msa0280730:intron | 35.0% |
| GTACAAGTAATGTGCACAAT+TGG | - | chr2_3:15630079-15630098 | None:intergenic | 35.0% | |
| TGTCTATCATACATGCATCT+AGG | + | chr2_3:15630153-15630172 | Msa0280730:intron | 35.0% | |
| TTGGACACATGGAAATGAAA+GGG | - | chr2_3:15630277-15630296 | None:intergenic | 35.0% | |
| ATTGGACACATGGAAATGAA+AGG | - | chr2_3:15630278-15630297 | None:intergenic | 35.0% | |
| ! | TTGTCGGTTAGAAAGTTCTA+AGG | + | chr2_3:15630570-15630589 | Msa0280730:intron | 35.0% |
| ! | TGTCGGTTAGAAAGTTCTAA+GGG | + | chr2_3:15630571-15630590 | Msa0280730:intron | 35.0% |
| TATGTTGTGACATCCTCATA+AGG | - | chr2_3:15630604-15630623 | None:intergenic | 35.0% | |
| CAAAACAAAACAAGCCTAAC+TGG | + | chr2_3:15630648-15630667 | Msa0280730:intron | 35.0% | |
| !! | ATCCCTTTTAAGTCACTCAA+AGG | + | chr2_3:15630960-15630979 | Msa0280730:intron | 35.0% |
| CTCCTTTGAGTGACTTAAAA+GGG | - | chr2_3:15630965-15630984 | None:intergenic | 35.0% | |
| TCTCCTTTGAGTGACTTAAA+AGG | - | chr2_3:15630966-15630985 | None:intergenic | 35.0% | |
| AAGGAGATACAAGAATGACT+TGG | + | chr2_3:15630979-15630998 | Msa0280730:intron | 35.0% | |
| AGGCTTACTTTGGATATCAA+AGG | - | chr2_3:15631558-15631577 | None:intergenic | 35.0% | |
| !! | GAAAAAGCATTAGACTCTGT+TGG | - | chr2_3:15631657-15631676 | None:intergenic | 35.0% |
| !!! | CATTTTTTGATTCAGCAGAC+TGG | + | chr2_3:15631714-15631733 | Msa0280730:CDS | 35.0% |
| GGAATTTAATCTCTACAGCA+AGG | + | chr2_3:15631824-15631843 | Msa0280730:intron | 35.0% | |
| !! | TCATACACCAATTGTTTTGC+AGG | + | chr2_3:15632183-15632202 | Msa0280730:three_prime_UTR | 35.0% |
| !! | CATACACCAATTGTTTTGCA+GGG | + | chr2_3:15632184-15632203 | Msa0280730:three_prime_UTR | 35.0% |
| TAGATTCAACTATTGGCACA+AGG | + | chr2_3:15632211-15632230 | Msa0280730:intron | 35.0% | |
| CATCTATTTGACCAAAACGT+GGG | + | chr2_3:15632375-15632394 | Msa0280730:three_prime_UTR | 35.0% | |
| ATCTATTTGACCAAAACGTG+GGG | + | chr2_3:15632376-15632395 | Msa0280730:three_prime_UTR | 35.0% | |
| ! | TGAACTTGGGATTTGAAATG+TGG | + | chr2_3:15632400-15632419 | Msa0280730:three_prime_UTR | 35.0% |
| TGGTAGATCCAAATTTAGGA+CGG | + | chr2_3:15632420-15632439 | Msa0280730:three_prime_UTR | 35.0% | |
| ATATTATACGAGGAGAGGCT+AGG | - | chr2_3:15629285-15629304 | None:intergenic | 40.0% | |
| TTATGCTGCCAATAACGTTG+AGG | + | chr2_3:15629781-15629800 | Msa0280730:CDS | 40.0% | |
| GAATAAGATACGTGCACATG+TGG | + | chr2_3:15630049-15630068 | Msa0280730:intron | 40.0% | |
| TGGACACATGGAAATGAAAG+GGG | - | chr2_3:15630276-15630295 | None:intergenic | 40.0% | |
| !! | GTCGGTTAGAAAGTTCTAAG+GGG | + | chr2_3:15630572-15630591 | Msa0280730:intron | 40.0% |
| TGTGACATCCTCATAAGGTA+GGG | - | chr2_3:15630599-15630618 | None:intergenic | 40.0% | |
| TTGTGACATCCTCATAAGGT+AGG | - | chr2_3:15630600-15630619 | None:intergenic | 40.0% | |
| GCTCATGTTTGGGAGAAATA+AGG | - | chr2_3:15630703-15630722 | None:intergenic | 40.0% | |
| TTCTTATGTGTAGTAGGGAG+AGG | - | chr2_3:15630801-15630820 | None:intergenic | 40.0% | |
| ! | GAGATACAAGAATGACTTGG+TGG | + | chr2_3:15630982-15631001 | Msa0280730:intron | 40.0% |
| TACTCTCCCTGCAAAACAAT+TGG | - | chr2_3:15632193-15632212 | None:intergenic | 40.0% | |
| GGGAGAGTAGATTCAACTAT+TGG | + | chr2_3:15632204-15632223 | Msa0280730:intron | 40.0% | |
| !! | CCACGTTTTGGTCAAATAGA+TGG | - | chr2_3:15632377-15632396 | None:intergenic | 40.0% |
| CCATCTATTTGACCAAAACG+TGG | + | chr2_3:15632374-15632393 | Msa0280730:three_prime_UTR | 40.0% | |
| GTAAGAGTCCGTCCTAAATT+TGG | - | chr2_3:15632431-15632450 | None:intergenic | 40.0% | |
| GAAGAGAGGTTTGAGTGAGA+AGG | - | chr2_3:15629365-15629384 | None:intergenic | 45.0% | |
| ACATTAGTTCGCCACGTTAG+AGG | - | chr2_3:15629984-15630003 | None:intergenic | 45.0% | |
| AAACAAGCCTAACTGGCTGT+AGG | + | chr2_3:15630655-15630674 | Msa0280730:intron | 45.0% | |
| AACAAGCCTAACTGGCTGTA+GGG | + | chr2_3:15630656-15630675 | Msa0280730:intron | 45.0% | |
| GGCATGAGAAGCTCATGTTT+GGG | - | chr2_3:15630713-15630732 | None:intergenic | 45.0% | |
| TGGCATGAGAAGCTCATGTT+TGG | - | chr2_3:15630714-15630733 | None:intergenic | 45.0% | |
| !! | CAAGAATGACTTGGTGGCTA+TGG | + | chr2_3:15630988-15631007 | Msa0280730:intron | 45.0% |
| ACATCTGTGGGCAAGAAGTA+TGG | + | chr2_3:15631510-15631529 | Msa0280730:CDS | 45.0% | |
| TAATCTCTACAGCAAGGTGC+TGG | + | chr2_3:15631830-15631849 | Msa0280730:intron | 45.0% | |
| ATGTGCATGCAGGTCTTCTT+GGG | - | chr2_3:15632056-15632075 | None:intergenic | 45.0% | |
| AATCAACCAGATGTGCATGC+AGG | - | chr2_3:15632066-15632085 | None:intergenic | 45.0% | |
| CAAAACGTGGGGTTGAACTT+GGG | + | chr2_3:15632387-15632406 | Msa0280730:three_prime_UTR | 45.0% | |
| !! | TTATAAAATCATTTATTTAT+TGG | - | chr2_3:15630296-15630315 | None:intergenic | 5.0% |
| !! | AAAAAAAATAAATAATAAGT+AGG | - | chr2_3:15630430-15630449 | None:intergenic | 5.0% |
| !!! | TTATTATTTATTTTTTTTGA+AGG | + | chr2_3:15630432-15630451 | Msa0280730:intron | 5.0% |
| !!! | TATTATTTATTTTTTTTGAA+GGG | + | chr2_3:15630433-15630452 | Msa0280730:intron | 5.0% |
| ! | ATTACCTTGTGGTGGGAGCA+AGG | - | chr2_3:15629445-15629464 | None:intergenic | 50.0% |
| TAAGGGGTCCCTACCTTATG+AGG | + | chr2_3:15630588-15630607 | Msa0280730:intron | 50.0% | |
| TGACAACCCTACAGCCAGTT+AGG | - | chr2_3:15630665-15630684 | None:intergenic | 50.0% | |
| ! | TCTGTGGGCAAGAAGTATGG+TGG | + | chr2_3:15631513-15631532 | Msa0280730:CDS | 50.0% |
| ! | CTGTGGGCAAGAAGTATGGT+GGG | + | chr2_3:15631514-15631533 | Msa0280730:CDS | 50.0% |
| AGCAGACTGGGCATTATGCA+AGG | + | chr2_3:15631727-15631746 | Msa0280730:CDS | 50.0% | |
| !!! | TACCTGTAGTTTTGGCCGCA+GGG | - | chr2_3:15631888-15631907 | None:intergenic | 50.0% |
| TGTGCATGCAGGTCTTCTTG+GGG | - | chr2_3:15632055-15632074 | None:intergenic | 50.0% | |
| GATGTGCATGCAGGTCTTCT+TGG | - | chr2_3:15632057-15632076 | None:intergenic | 50.0% | |
| AGAAGACCTGCATGCACATC+TGG | + | chr2_3:15632057-15632076 | Msa0280730:CDS | 50.0% | |
| ! | CCAAGTTCAACCCCACGTTT+TGG | - | chr2_3:15632389-15632408 | None:intergenic | 50.0% |
| CCAAAACGTGGGGTTGAACT+TGG | + | chr2_3:15632386-15632405 | Msa0280730:three_prime_UTR | 50.0% | |
| TCTACCTTGCTCCCACCACA+AGG | + | chr2_3:15629438-15629457 | Msa0280730:CDS | 55.0% | |
| ! | TTTTGGCCGCAGGGTCTCTA+CGG | - | chr2_3:15631879-15631898 | None:intergenic | 55.0% |
| !!! | GTACCTGTAGTTTTGGCCGC+AGG | - | chr2_3:15631889-15631908 | None:intergenic | 55.0% |
| GTGCATGCAGGTCTTCTTGG+GGG | - | chr2_3:15632054-15632073 | None:intergenic | 55.0% | |
| GACCCTGCGGCCAAAACTAC+AGG | + | chr2_3:15631883-15631902 | Msa0280730:CDS | 60.0% | |
| CTTGGGGGAAGCTGCTGATG+TGG | - | chr2_3:15632039-15632058 | None:intergenic | 60.0% | |
| CAGCAGCCGTAGAGACCCTG+CGG | + | chr2_3:15631870-15631889 | Msa0280730:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 15629261 | 15632484 | 15629261 | ID=Msa0280730;Name=Msa0280730 |
| chr2_3 | mRNA | 15629261 | 15632484 | 15629261 | ID=Msa0280730-mRNA-1;Parent=Msa0280730;Name=Msa0280730-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|1|0.85|1|0.83|0.71|7|317|223 |
| chr2_3 | exon | 15629261 | 15629647 | 15629261 | ID=Msa0280730-mRNA-1:exon:6531;Parent=Msa0280730-mRNA-1 |
| chr2_3 | exon | 15629746 | 15629802 | 15629746 | ID=Msa0280730-mRNA-1:exon:6532;Parent=Msa0280730-mRNA-1 |
| chr2_3 | exon | 15631507 | 15631569 | 15631507 | ID=Msa0280730-mRNA-1:exon:6533;Parent=Msa0280730-mRNA-1 |
| chr2_3 | exon | 15631701 | 15631748 | 15631701 | ID=Msa0280730-mRNA-1:exon:6534;Parent=Msa0280730-mRNA-1 |
| chr2_3 | exon | 15631842 | 15631904 | 15631842 | ID=Msa0280730-mRNA-1:exon:6535;Parent=Msa0280730-mRNA-1 |
| chr2_3 | exon | 15632030 | 15632205 | 15632030 | ID=Msa0280730-mRNA-1:exon:6536;Parent=Msa0280730-mRNA-1 |
| chr2_3 | exon | 15632290 | 15632484 | 15632290 | ID=Msa0280730-mRNA-1:exon:6537;Parent=Msa0280730-mRNA-1 |
| chr2_3 | CDS | 15629261 | 15629647 | 15629261 | ID=Msa0280730-mRNA-1:cds;Parent=Msa0280730-mRNA-1 |
| chr2_3 | CDS | 15629746 | 15629802 | 15629746 | ID=Msa0280730-mRNA-1:cds;Parent=Msa0280730-mRNA-1 |
| chr2_3 | CDS | 15631507 | 15631569 | 15631507 | ID=Msa0280730-mRNA-1:cds;Parent=Msa0280730-mRNA-1 |
| chr2_3 | CDS | 15631701 | 15631748 | 15631701 | ID=Msa0280730-mRNA-1:cds;Parent=Msa0280730-mRNA-1 |
| chr2_3 | CDS | 15631842 | 15631904 | 15631842 | ID=Msa0280730-mRNA-1:cds;Parent=Msa0280730-mRNA-1 |
| chr2_3 | CDS | 15632030 | 15632083 | 15632030 | ID=Msa0280730-mRNA-1:cds;Parent=Msa0280730-mRNA-1 |
| chr2_3 | three_prime_UTR | 15632084 | 15632205 | 15632084 | ID=Msa0280730-mRNA-1:three_prime_utr;Parent=Msa0280730-mRNA-1 |
| chr2_3 | three_prime_UTR | 15632290 | 15632484 | 15632290 | ID=Msa0280730-mRNA-1:three_prime_utr;Parent=Msa0280730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
