Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138240 | XP_013447667.1 | 98.655 | 446 | 5 | 1 | 1 | 445 | 1 | 446 | 0.0 | 911 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138240 | sp|Q94KT8|COBRA_ARATH | 75.682 | 440 | 94 | 3 | 4 | 430 | 3 | 442 | 0.0 | 717 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138240 | A0A072TXZ2 | 98.655 | 446 | 5 | 1 | 1 | 445 | 1 | 446 | 0.0 | 911 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0752030 | Msa1138240 | 0.821341 | 4.251143e-53 | -8.615850e-47 |
| Msa0131050 | Msa1138240 | 0.861249 | 1.171152e-63 | -8.615850e-47 |
| Msa0138390 | Msa1138240 | 0.812410 | 4.299250e-51 | -8.615850e-47 |
| Msa0365160 | Msa1138240 | 0.802000 | 6.905695e-49 | -8.615850e-47 |
| Msa0376450 | Msa1138240 | 0.810706 | 1.008697e-50 | -8.615850e-47 |
| Msa0377970 | Msa1138240 | 0.821642 | 3.622346e-53 | -8.615850e-47 |
| Msa0418430 | Msa1138240 | -0.809552 | 1.788587e-50 | -8.615850e-47 |
| Msa0427000 | Msa1138240 | 0.803288 | 3.744642e-49 | -8.615850e-47 |
| Msa0427620 | Msa1138240 | 0.815071 | 1.115202e-51 | -8.615850e-47 |
| Msa0465800 | Msa1138240 | -0.815871 | 7.402613e-52 | -8.615850e-47 |
| Msa0471720 | Msa1138240 | 0.811408 | 7.107952e-51 | -8.615850e-47 |
| Msa0472740 | Msa1138240 | -0.832705 | 8.115828e-56 | -8.615850e-47 |
| Msa1098180 | Msa1138240 | 0.907312 | 5.808872e-81 | -8.615850e-47 |
| Msa0240450 | Msa1138240 | 0.810052 | 1.395843e-50 | -8.615850e-47 |
| Msa0270030 | Msa1138240 | 0.865571 | 5.363539e-65 | -8.615850e-47 |
| Msa1119250 | Msa1138240 | 0.889059 | 3.397074e-73 | -8.615850e-47 |
| Msa1119300 | Msa1138240 | 0.895417 | 9.774866e-76 | -8.615850e-47 |
| Msa1138240 | Msa1147980 | 0.813389 | 2.624122e-51 | -8.615850e-47 |
| Msa1138240 | Msa1218360 | 0.801467 | 8.882590e-49 | -8.615850e-47 |
| Msa1138240 | Msa1351640 | 0.856221 | 3.725829e-62 | -8.615850e-47 |
| Msa1138240 | Msa1358610 | 0.824107 | 9.656154e-54 | -8.615850e-47 |
| Msa1138240 | Msa1375060 | 0.872013 | 4.406402e-67 | -8.615850e-47 |
| Msa1138240 | Msa1392330 | 0.873052 | 1.982254e-67 | -8.615850e-47 |
| Msa1138240 | Msa1421870 | -0.801407 | 9.136822e-49 | -8.615850e-47 |
| Msa1138240 | Msa1423580 | 0.817701 | 2.876600e-52 | -8.615850e-47 |
| Msa1138240 | Msa1452090 | 0.852888 | 3.434843e-61 | -8.615850e-47 |
| Msa1138240 | Msa1460820 | 0.869760 | 2.432641e-66 | -8.615850e-47 |
| Msa0516510 | Msa1138240 | 0.815430 | 9.280787e-52 | -8.615850e-47 |
| Msa0517750 | Msa1138240 | 0.801430 | 9.036973e-49 | -8.615850e-47 |
| Msa0518130 | Msa1138240 | 0.826569 | 2.524554e-54 | -8.615850e-47 |
| Msa0967650 | Msa1138240 | 0.811316 | 7.442242e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138240 | MtrunA17_Chr7g0219921 | 98.655 | 446 | 5 | 1 | 1 | 445 | 1 | 446 | 0.0 | 911 |
| Msa1138240 | MtrunA17_Chr6g0455401 | 82.287 | 446 | 75 | 3 | 1 | 444 | 2 | 445 | 0.0 | 771 |
| Msa1138240 | MtrunA17_Chr2g0308381 | 81.007 | 437 | 78 | 2 | 7 | 439 | 11 | 446 | 0.0 | 751 |
| Msa1138240 | MtrunA17_Chr6g0455391 | 76.960 | 421 | 87 | 4 | 1 | 419 | 1 | 413 | 0.0 | 667 |
| Msa1138240 | MtrunA17_Chr2g0333731 | 65.802 | 424 | 144 | 1 | 23 | 445 | 25 | 448 | 0.0 | 625 |
| Msa1138240 | MtrunA17_Chr6g0455411 | 67.548 | 416 | 131 | 1 | 15 | 430 | 8 | 419 | 0.0 | 624 |
| Msa1138240 | MtrunA17_Chr7g0219931 | 68.182 | 418 | 129 | 1 | 18 | 435 | 11 | 424 | 0.0 | 622 |
| Msa1138240 | MtrunA17_Chr2g0308371 | 60.140 | 429 | 161 | 3 | 18 | 441 | 16 | 439 | 0.0 | 573 |
| Msa1138240 | MtrunA17_Chr3g0145441 | 45.221 | 429 | 222 | 8 | 14 | 433 | 30 | 454 | 1.20e-135 | 398 |
| Msa1138240 | MtrunA17_Chr4g0068011 | 26.419 | 458 | 278 | 19 | 17 | 428 | 189 | 633 | 7.17e-41 | 154 |
| Msa1138240 | MtrunA17_Chr2g0294901 | 27.233 | 459 | 274 | 18 | 33 | 444 | 208 | 653 | 4.51e-40 | 152 |
| Msa1138240 | MtrunA17_Chr5g0394101 | 27.316 | 421 | 249 | 17 | 34 | 409 | 26 | 434 | 6.18e-38 | 143 |
| Msa1138240 | MtrunA17_Chr2g0319581 | 26.269 | 453 | 272 | 18 | 34 | 441 | 226 | 661 | 6.70e-37 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138240 | AT5G60920.1 | 75.682 | 440 | 94 | 3 | 4 | 430 | 3 | 442 | 0.0 | 717 |
| Msa1138240 | AT3G02210.1 | 73.836 | 451 | 109 | 4 | 1 | 443 | 1 | 450 | 0.0 | 699 |
| Msa1138240 | AT3G29810.1 | 73.455 | 437 | 102 | 4 | 15 | 441 | 8 | 440 | 0.0 | 682 |
| Msa1138240 | AT5G60920.2 | 78.481 | 395 | 83 | 1 | 38 | 430 | 1 | 395 | 0.0 | 682 |
| Msa1138240 | AT5G15630.1 | 69.157 | 415 | 122 | 2 | 26 | 438 | 20 | 430 | 0.0 | 626 |
| Msa1138240 | AT5G15630.3 | 68.090 | 398 | 121 | 2 | 43 | 438 | 1 | 394 | 0.0 | 591 |
| Msa1138240 | AT5G15630.4 | 67.792 | 385 | 118 | 2 | 56 | 438 | 1 | 381 | 0.0 | 570 |
| Msa1138240 | AT5G15630.2 | 67.792 | 385 | 118 | 2 | 56 | 438 | 1 | 381 | 0.0 | 570 |
| Msa1138240 | AT5G15630.5 | 72.000 | 325 | 87 | 1 | 26 | 350 | 20 | 340 | 0.0 | 509 |
| Msa1138240 | AT1G09790.1 | 53.317 | 407 | 180 | 4 | 15 | 418 | 24 | 423 | 1.02e-153 | 444 |
| Msa1138240 | AT1G09790.2 | 53.865 | 401 | 175 | 4 | 21 | 418 | 19 | 412 | 3.26e-152 | 439 |
| Msa1138240 | AT5G60950.1 | 54.680 | 203 | 83 | 3 | 13 | 214 | 8 | 202 | 3.49e-75 | 234 |
| Msa1138240 | AT4G16120.1 | 27.725 | 422 | 253 | 16 | 33 | 409 | 216 | 630 | 3.46e-42 | 158 |
| Msa1138240 | AT5G49270.1 | 24.524 | 473 | 304 | 17 | 17 | 445 | 200 | 663 | 1.74e-39 | 150 |
| Msa1138240 | AT3G20580.1 | 27.313 | 454 | 271 | 21 | 34 | 441 | 229 | 669 | 2.79e-35 | 139 |
| Msa1138240 | AT4G27110.1 | 27.412 | 456 | 272 | 21 | 33 | 443 | 218 | 659 | 6.70e-35 | 137 |
| Msa1138240 | AT3G16860.1 | 25.821 | 457 | 276 | 19 | 33 | 441 | 209 | 650 | 1.41e-34 | 136 |
Find 151 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTCTATGCATATGTTTA+AGG | 0.116457 | 7_4:-7614259 | Msa1138240:exon |
| GATGCCAAATGTGGCGTATT+TGG | 0.222372 | 7_4:+7615329 | None:intergenic |
| CATTTGGCATCGGTTGTTTC+TGG | 0.225058 | 7_4:-7615317 | Msa1138240:CDS |
| GGTGATTGTTCAAAATTTAA+AGG | 0.254979 | 7_4:-7616321 | Msa1138240:CDS |
| TACAAGTCATTAAATCCTTA+TGG | 0.273681 | 7_4:-7615083 | Msa1138240:CDS |
| TCATATTTGTGATGTCAATT+TGG | 0.299272 | 7_4:-7614173 | Msa1138240:three_prime_UTR |
| ACCGTTGTAGATTTACTTCC+TGG | 0.307567 | 7_4:-7616267 | Msa1138240:CDS |
| TTGATTGTGATATTCCCATT+TGG | 0.317355 | 7_4:+7616871 | None:intergenic |
| CACAAATATGACGCCAAAAC+TGG | 0.318545 | 7_4:+7614185 | None:intergenic |
| CTACTTTCTTTCACTTCAAC+AGG | 0.326474 | 7_4:-7617858 | Msa1138240:intron |
| AAAGAATAATTTATCTCCTT+TGG | 0.326690 | 7_4:-7615288 | Msa1138240:CDS |
| CCTTAACATGCCAGTGGATT+CGG | 0.336295 | 7_4:+7615237 | None:intergenic |
| CAGTCCAAATACGCCACATT+TGG | 0.349625 | 7_4:-7615333 | Msa1138240:CDS |
| GCATCGGTTGTTTCTGGTAA+TGG | 0.352230 | 7_4:-7615311 | Msa1138240:CDS |
| TGCTGATTGTAAGGCGTTCC+AGG | 0.362226 | 7_4:+7616249 | None:intergenic |
| TGATTGTGATATTCCCATTT+GGG | 0.364692 | 7_4:+7616872 | None:intergenic |
| TGGAAGTGAAGAGAAGACTA+TGG | 0.366936 | 7_4:+7617995 | None:intergenic |
| AGATGATACAGCAATGCTTT+GGG | 0.367593 | 7_4:-7614530 | Msa1138240:CDS |
| TGAGTCAGATTGTCGAAGTT+TGG | 0.377001 | 7_4:+7615122 | None:intergenic |
| TAAAGTTACAACTTACAATA+AGG | 0.381272 | 7_4:+7613994 | None:intergenic |
| CACTTACTTATTAAACCATA+AGG | 0.385273 | 7_4:+7615068 | None:intergenic |
| ATGGGAATATCACAATCAAA+TGG | 0.394559 | 7_4:-7616867 | Msa1138240:CDS |
| TTCGCAATTTGCTGATTGTA+AGG | 0.399179 | 7_4:+7616240 | None:intergenic |
| CGGGACCTGGTTATACTTGT+GGG | 0.403893 | 7_4:-7616080 | Msa1138240:CDS |
| TGTGAGAGTTATGGTGTTGT+TGG | 0.407253 | 7_4:+7617961 | None:intergenic |
| CAGATGATACAGCAATGCTT+TGG | 0.411116 | 7_4:-7614531 | Msa1138240:CDS |
| TGCTTTAGTAATGGCCTCCT+TGG | 0.418302 | 7_4:-7614290 | Msa1138240:CDS |
| TGAAAGTTGATTTATCCTTT+CGG | 0.420310 | 7_4:+7614437 | None:intergenic |
| TTACATAGGATTCAGCATAT+TGG | 0.421072 | 7_4:-7614076 | Msa1138240:three_prime_UTR |
| AAGATCCTACCATGGCAGTT+GGG | 0.422373 | 7_4:-7616182 | Msa1138240:CDS |
| CCGAATCCACTGGCATGTTA+AGG | 0.429523 | 7_4:-7615237 | Msa1138240:CDS |
| GCCACATGCACATGTTGGGC+AGG | 0.434884 | 7_4:+7615474 | None:intergenic |
| TTCATTGTTTGCTTTAGTAA+TGG | 0.442319 | 7_4:-7614299 | Msa1138240:CDS |
| TGAATCCTATGTAACAATCC+TGG | 0.443066 | 7_4:+7614085 | None:intergenic |
| AAGTCCGCACAAGATTCATC+AGG | 0.443238 | 7_4:+7613919 | None:intergenic |
| TATGATCCACTTGACCCAAA+TGG | 0.445643 | 7_4:-7616886 | Msa1138240:CDS |
| GTGGAAAATAAATAAAGAAC+AGG | 0.449547 | 7_4:+7618047 | None:intergenic |
| ACCGTATGAATTATTCCGAT+TGG | 0.456765 | 7_4:-7615163 | Msa1138240:CDS |
| GGCAGCCACATGCACATGTT+GGG | 0.458842 | 7_4:+7615470 | None:intergenic |
| GAATTATTCCGATTGGAACT+TGG | 0.459690 | 7_4:-7615156 | Msa1138240:CDS |
| GCTTCCCCTGGCTGGTCACT+AGG | 0.460746 | 7_4:-7616405 | Msa1138240:CDS |
| ATGATCCACTTGACCCAAAT+GGG | 0.461090 | 7_4:-7616885 | Msa1138240:CDS |
| GCATCCCAGGATTGTTACAT+AGG | 0.462791 | 7_4:-7614090 | Msa1138240:three_prime_UTR |
| ATACTTACAACATAACCATC+AGG | 0.464286 | 7_4:+7616826 | None:intergenic |
| TATCCATGGTTACCTAATGC+TGG | 0.468567 | 7_4:-7614337 | Msa1138240:CDS |
| TCTTGCCGAGAACCAGCATT+AGG | 0.468852 | 7_4:+7614325 | None:intergenic |
| GGTAACCATGGATAAGCATC+AGG | 0.472380 | 7_4:+7614346 | None:intergenic |
| AAGGTGGTGTGCTTAGTTCA+TGG | 0.474312 | 7_4:-7616209 | Msa1138240:CDS |
| CCGGGACCTGGTTATACTTG+TGG | 0.479248 | 7_4:-7616081 | Msa1138240:CDS |
| CAAATCAGTGTTGGTAGAGC+CGG | 0.480151 | 7_4:-7616153 | Msa1138240:CDS |
| CAGAGTAACTCATCTCAGTC+GGG | 0.483005 | 7_4:-7615448 | Msa1138240:CDS |
| GGAGGTAATCTGGAGTATGA+TGG | 0.483048 | 7_4:-7616364 | Msa1138240:CDS |
| GAGATTTGCTCATGCATCCC+AGG | 0.483177 | 7_4:-7614103 | Msa1138240:three_prime_UTR |
| GGTTACCTAATGCTGGTTCT+CGG | 0.484219 | 7_4:-7614330 | Msa1138240:CDS |
| AGAGAGAGAGTGGAAGAATG+TGG | 0.485162 | 7_4:+7618028 | None:intergenic |
| CACAAGTATAACCAGGTCCC+GGG | 0.494067 | 7_4:+7616082 | None:intergenic |
| AGTTTATTCAACCAGACAAA+AGG | 0.499947 | 7_4:-7616032 | Msa1138240:CDS |
| CCACAAGTATAACCAGGTCC+CGG | 0.502390 | 7_4:+7616081 | None:intergenic |
| ACATGCCAGTGGATTCGGAT+TGG | 0.505154 | 7_4:+7615242 | None:intergenic |
| CCCCTGGCTGGTCACTAGGA+TGG | 0.506120 | 7_4:-7616401 | Msa1138240:CDS |
| AGGTGGTGTGCTTAGTTCAT+GGG | 0.510178 | 7_4:-7616208 | Msa1138240:CDS |
| AGAAAGAAGAAGAGAATGCA+AGG | 0.510565 | 7_4:+7617879 | None:intergenic |
| TTGAACATTGCCACTAGGGC+CGG | 0.514057 | 7_4:+7614474 | None:intergenic |
| TGGGAATATCACAATCAAAT+GGG | 0.515468 | 7_4:-7616866 | Msa1138240:CDS |
| GGAAGTAAATCTACAACGGT+TGG | 0.516271 | 7_4:+7616270 | None:intergenic |
| AAGCGATGTGACGATATTGT+TGG | 0.517365 | 7_4:+7616424 | None:intergenic |
| CAAGATCCTACCATGGCAGT+TGG | 0.517499 | 7_4:-7616183 | Msa1138240:CDS |
| CGGATTGAACATTGCCACTA+GGG | 0.519794 | 7_4:+7614470 | None:intergenic |
| TGGCAGCCACATGCACATGT+TGG | 0.520435 | 7_4:+7615469 | None:intergenic |
| TTTGATTCATTGCAGTGACA+TGG | 0.521238 | 7_4:-7615588 | Msa1138240:intron |
| ACGGTAATTAAAATTAGTAA+TGG | 0.524317 | 7_4:+7615181 | None:intergenic |
| AGGTTAACTACAAGGAATAC+TGG | 0.527274 | 7_4:-7615217 | Msa1138240:CDS |
| AAACTTCACCTTGAGTGCCC+CGG | 0.530850 | 7_4:-7616100 | Msa1138240:CDS |
| TATCGTCACATCGCTTCCCC+TGG | 0.531832 | 7_4:-7616417 | Msa1138240:CDS |
| GTCCATCCTAGTGACCAGCC+AGG | 0.533946 | 7_4:+7616399 | None:intergenic |
| AACTTCACCTTGAGTGCCCC+GGG | 0.534373 | 7_4:-7616099 | Msa1138240:CDS |
| ATATTCCCATTTGGGTCAAG+TGG | 0.535481 | 7_4:+7616880 | None:intergenic |
| ATCCTTTCGGAAGAGTAGCT+CGG | 0.537437 | 7_4:+7614450 | None:intergenic |
| TCCATCCTAGTGACCAGCCA+GGG | 0.540729 | 7_4:+7616400 | None:intergenic |
| GAGGTAATCTGGAGTATGAT+GGG | 0.541530 | 7_4:-7616363 | Msa1138240:CDS |
| ACAGGAGAAGACTGACTGGA+TGG | 0.544402 | 7_4:+7618065 | None:intergenic |
| ATACATCAACAAACATTACA+TGG | 0.546981 | 7_4:-7613951 | Msa1138240:three_prime_UTR |
| ACCTGGTTATACTTGTGGGC+CGG | 0.548289 | 7_4:-7616076 | Msa1138240:CDS |
| CATAGGATTCAGCATATTGG+TGG | 0.552396 | 7_4:-7614073 | Msa1138240:three_prime_UTR |
| CAAATTGCGAATTGCTGCAA+AGG | 0.552727 | 7_4:-7616228 | Msa1138240:CDS |
| TCTGGTTGAATAAACTGAGT+AGG | 0.553209 | 7_4:+7616039 | None:intergenic |
| CTGAACAACCAAGTTCCAAT+CGG | 0.553717 | 7_4:+7615148 | None:intergenic |
| AAGAACAGGAGAAGACTGAC+TGG | 0.553889 | 7_4:+7618061 | None:intergenic |
| CATGGATAAGCATCAGGAGG+TGG | 0.554558 | 7_4:+7614352 | None:intergenic |
| TCCAATCGGAATAATTCATA+CGG | 0.554746 | 7_4:+7615162 | None:intergenic |
| CCGTTGAAGTAGATCCTTCG+AGG | 0.556835 | 7_4:+7614391 | None:intergenic |
| GAATCCTATGTAACAATCCT+GGG | 0.559415 | 7_4:+7614086 | None:intergenic |
| CCAGAGTAACTCATCTCAGT+CGG | 0.559814 | 7_4:-7615449 | Msa1138240:CDS |
| CTTAATCACGCCGGCCCTAG+TGG | 0.560947 | 7_4:-7614484 | Msa1138240:CDS |
| TCGGATTGAACATTGCCACT+AGG | 0.564514 | 7_4:+7614469 | None:intergenic |
| TGAACAATCACCTTGTTCTG+TGG | 0.567033 | 7_4:+7616332 | None:intergenic |
| AGATCCTACCATGGCAGTTG+GGG | 0.567928 | 7_4:-7616181 | Msa1138240:CDS |
| CCGACTGAGATGAGTTACTC+TGG | 0.570877 | 7_4:+7615449 | None:intergenic |
| ATCGTTATAGAAAGATGAGA+GGG | 0.574213 | 7_4:+7615507 | None:intergenic |
| AAATGTGTATGTGAGAGTTA+TGG | 0.578849 | 7_4:+7617952 | None:intergenic |
| CCCTGCCCAACATGTGCATG+TGG | 0.583543 | 7_4:-7615475 | Msa1138240:CDS |
| TAATGCTGGTTCTCGGCAAG+AGG | 0.584933 | 7_4:-7614323 | Msa1138240:CDS |
| GGAAGTGAAGAGAAGACTAT+GGG | 0.588224 | 7_4:+7617996 | None:intergenic |
| GGGGCGTTTCAAATCAGTGT+TGG | 0.588523 | 7_4:-7616162 | Msa1138240:CDS |
| GATAAAGTATAATCACAGGT+TGG | 0.588813 | 7_4:+7614234 | None:intergenic |
| AGGGCTGGGCTTTCCCTCGA+AGG | 0.589607 | 7_4:-7614405 | Msa1138240:CDS |
| AAATACGCCACATTTGGCAT+CGG | 0.589714 | 7_4:-7615327 | Msa1138240:CDS |
| TGTGTCCAATCCGAATCCAC+TGG | 0.591212 | 7_4:-7615247 | Msa1138240:CDS |
| CACCTCCTGATGCTTATCCA+TGG | 0.592826 | 7_4:-7614351 | Msa1138240:CDS |
| TACTTACAACATAACCATCA+GGG | 0.593553 | 7_4:+7616827 | None:intergenic |
| TTGAAACGCCCCAACTGCCA+TGG | 0.594933 | 7_4:+7616173 | None:intergenic |
| GGATCACAGACCACAGAACA+AGG | 0.595290 | 7_4:-7616342 | Msa1138240:CDS |
| GCTGGTCACTAGGATGGACA+TGG | 0.597573 | 7_4:-7616395 | Msa1138240:CDS |
| GCCGGCCCACAAGTATAACC+AGG | 0.599635 | 7_4:+7616075 | None:intergenic |
| CAGGAGAAGACTGACTGGAT+GGG | 0.602149 | 7_4:+7618066 | None:intergenic |
| ATTATACAATGGACCCCTGA+TGG | 0.602448 | 7_4:-7616841 | Msa1138240:CDS |
| GAAACAACCGATGCCAAATG+TGG | 0.604608 | 7_4:+7615320 | None:intergenic |
| CAATGATAAAGTATAATCAC+AGG | 0.606313 | 7_4:+7614230 | None:intergenic |
| ACATGTTGGGCAGGGTACAA+TGG | 0.607343 | 7_4:+7615483 | None:intergenic |
| AGTTAACCTTAACATGCCAG+TGG | 0.609000 | 7_4:+7615231 | None:intergenic |
| TGACTAGTACATTGAACCAA+AGG | 0.612772 | 7_4:+7615272 | None:intergenic |
| GCATGTTAAGGTTAACTACA+AGG | 0.617139 | 7_4:-7615225 | Msa1138240:CDS |
| CAAGGAATACTGGCGTGTGA+AGG | 0.617910 | 7_4:-7615207 | Msa1138240:CDS |
| GATGATACAGCAATGCTTTG+GGG | 0.620085 | 7_4:-7614529 | Msa1138240:CDS |
| TATCGTTATAGAAAGATGAG+AGG | 0.621063 | 7_4:+7615506 | None:intergenic |
| TGAGAGGGAGACACAACAAG+TGG | 0.621663 | 7_4:+7615522 | None:intergenic |
| CCTCGAAGGATCTACTTCAA+CGG | 0.625513 | 7_4:-7614391 | Msa1138240:CDS |
| TGTTGTTGGTTCAAGATCTG+TGG | 0.630452 | 7_4:+7617975 | None:intergenic |
| ATTGCGAATTGCTGCAAAGG+TGG | 0.631481 | 7_4:-7616225 | Msa1138240:CDS |
| TCAAATGGGATATTATACAA+TGG | 0.631980 | 7_4:-7616852 | Msa1138240:CDS |
| ATCCGAGCTACTCTTCCGAA+AGG | 0.638631 | 7_4:-7614452 | Msa1138240:CDS |
| GAAGTTGTTCATCGTAACTG+TGG | 0.642636 | 7_4:+7616446 | None:intergenic |
| GAACCAGCATTAGGTAACCA+TGG | 0.651474 | 7_4:+7614334 | None:intergenic |
| CCACATGCACATGTTGGGCA+GGG | 0.652900 | 7_4:+7615475 | None:intergenic |
| GAGAGGGAGACACAACAAGT+GGG | 0.654264 | 7_4:+7615523 | None:intergenic |
| ATAGAATACTAAGACTGCCA+AGG | 0.656336 | 7_4:+7614273 | None:intergenic |
| CGTTGAAGTAGATCCTTCGA+GGG | 0.658891 | 7_4:+7614392 | None:intergenic |
| TAAGCCTGATGAATCTTGTG+CGG | 0.659040 | 7_4:-7613923 | Msa1138240:three_prime_UTR |
| ACAAGTATAACCAGGTCCCG+GGG | 0.665291 | 7_4:+7616083 | None:intergenic |
| AACCATGGATAAGCATCAGG+AGG | 0.668253 | 7_4:+7614349 | None:intergenic |
| GAATACTAAGACTGCCAAGG+AGG | 0.670179 | 7_4:+7614276 | None:intergenic |
| AGAGTAACTCATCTCAGTCG+GGG | 0.672937 | 7_4:-7615447 | Msa1138240:CDS |
| AACGCCCCAACTGCCATGGT+AGG | 0.675826 | 7_4:+7616177 | None:intergenic |
| ACTTACAACATAACCATCAG+GGG | 0.679147 | 7_4:+7616828 | None:intergenic |
| CCATCCTAGTGACCAGCCAG+GGG | 0.683887 | 7_4:+7616401 | None:intergenic |
| TCCAGGAAGTAAATCTACAA+CGG | 0.692499 | 7_4:+7616266 | None:intergenic |
| AGAGGGACTGACTATATACA+CGG | 0.699789 | 7_4:-7614136 | Msa1138240:three_prime_UTR |
| GGACTGACTATATACACGGG+TGG | 0.715590 | 7_4:-7614132 | Msa1138240:three_prime_UTR |
| ATGGGCTCAAGATCCTACCA+TGG | 0.715689 | 7_4:-7616190 | Msa1138240:CDS |
| GAGGGACTGACTATATACAC+GGG | 0.716252 | 7_4:-7614135 | Msa1138240:three_prime_UTR |
| CTGGTCACTAGGATGGACAT+GGG | 0.718386 | 7_4:-7616394 | Msa1138240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTGATTAAAAAAGT+GGG | - | chr7_4:7614311-7614330 | Msa1138240:CDS | 10.0% |
| !!! | ACTATCTTTTTTTTTTTTTT+TGG | - | chr7_4:7614471-7614490 | Msa1138240:CDS | 10.0% |
| !! | TTAAAAAAAATCCTATAATA+AGG | - | chr7_4:7614888-7614907 | Msa1138240:intron | 10.0% |
| !! | TAAAAAAAATCCTATAATAA+GGG | - | chr7_4:7614889-7614908 | Msa1138240:intron | 10.0% |
| !! | AAATATATCTAAATAACTAA+CGG | + | chr7_4:7615522-7615541 | None:intergenic | 10.0% |
| !!! | ATTTTGCATAATTTTTTTGT+TGG | - | chr7_4:7614234-7614253 | Msa1138240:three_prime_UTR | 15.0% |
| !!! | GTTTAATTTGATTAAAAAAG+TGG | - | chr7_4:7614310-7614329 | Msa1138240:CDS | 15.0% |
| !!! | TTTTTTGGTAAGAAAATATT+TGG | - | chr7_4:7614486-7614505 | Msa1138240:CDS | 15.0% |
| !! | TTAAATGTAATCACATATAT+CGG | + | chr7_4:7616270-7616289 | None:intergenic | 15.0% |
| !! | TCTAATACAAGTACAAAAAT+GGG | - | chr7_4:7614081-7614100 | Msa1138240:three_prime_UTR | 20.0% |
| !! | TTGCTATAAAAATTTGCATA+TGG | - | chr7_4:7614420-7614439 | Msa1138240:CDS | 20.0% |
| !!! | TCATTTTTTACATTTTGAGA+TGG | + | chr7_4:7614980-7614999 | None:intergenic | 20.0% |
| !! | TAAGATCAAAGTTAAATTGT+GGG | + | chr7_4:7616393-7616412 | None:intergenic | 20.0% |
| !! | TTAAGATCAAAGTTAAATTG+TGG | + | chr7_4:7616394-7616413 | None:intergenic | 20.0% |
| !! | TTTACAACATAGAATCTAAA+AGG | + | chr7_4:7616630-7616649 | None:intergenic | 20.0% |
| !! | AAAGAATAATTTATCTCCTT+TGG | - | chr7_4:7616720-7616739 | Msa1138240:intron | 20.0% |
| !! | ACGGTAATTAAAATTAGTAA+TGG | + | chr7_4:7616830-7616849 | None:intergenic | 20.0% |
| !! | AATTTCTTTAACGACAAATT+TGG | - | chr7_4:7617198-7617217 | Msa1138240:intron | 20.0% |
| !! | AAATTCTTTAACCACAAATT+TGG | + | chr7_4:7617298-7617317 | None:intergenic | 20.0% |
| !!! | TTTTGTGAAAACTTTTTAAG+TGG | + | chr7_4:7617386-7617405 | None:intergenic | 20.0% |
| !! | TCACAAAAGTTGTTTAAATT+TGG | - | chr7_4:7617398-7617417 | Msa1138240:intron | 20.0% |
| !! | TAAAGTTACAACTTACAATA+AGG | + | chr7_4:7618017-7618036 | None:intergenic | 20.0% |
| ! | GTGGAAAATAAATAAAGAAC+AGG | + | chr7_4:7613964-7613983 | None:intergenic | 25.0% |
| ! | CTCTAATACAAGTACAAAAA+TGG | - | chr7_4:7614080-7614099 | Msa1138240:three_prime_UTR | 25.0% |
| ! | TGCTAATATTCCCTTATTAT+AGG | + | chr7_4:7614902-7614921 | None:intergenic | 25.0% |
| ! | TAATAAGGGAATATTAGCAT+AGG | - | chr7_4:7614903-7614922 | Msa1138240:intron | 25.0% |
| ! | TCAAATGGGATATTATACAA+TGG | - | chr7_4:7615156-7615175 | Msa1138240:CDS | 25.0% |
| ! | ATACACTTCACAAATGTTTA+TGG | + | chr7_4:7615427-7615446 | None:intergenic | 25.0% |
| ! | GGTGATTGTTCAAAATTTAA+AGG | - | chr7_4:7615687-7615706 | Msa1138240:intron | 25.0% |
| !! | ACTAATATCTCTTTTCTTTG+TGG | - | chr7_4:7616649-7616668 | Msa1138240:intron | 25.0% |
| ! | TACAAGTCATTAAATCCTTA+TGG | - | chr7_4:7616925-7616944 | Msa1138240:intron | 25.0% |
| ! | CACTTACTTATTAAACCATA+AGG | + | chr7_4:7616943-7616962 | None:intergenic | 25.0% |
| ! | CACAACAAGAAAAGAAATTA+AGG | + | chr7_4:7617041-7617060 | None:intergenic | 25.0% |
| ! | AAAGTAATTAACCACCTATT+TGG | + | chr7_4:7617125-7617144 | None:intergenic | 25.0% |
| ! | AGTTTAACACCTGAAAAATA+TGG | - | chr7_4:7617262-7617281 | Msa1138240:intron | 25.0% |
| ! | TAAGTTCAATACTTGGTTAA+TGG | + | chr7_4:7617336-7617355 | None:intergenic | 25.0% |
| ! | GGTTAATTAAGTTCAATACT+TGG | + | chr7_4:7617343-7617362 | None:intergenic | 25.0% |
| ! | GTTAACGCAATTCAAATAAA+TGG | + | chr7_4:7617364-7617383 | None:intergenic | 25.0% |
| !! | TGAAAGTTGATTTATCCTTT+CGG | + | chr7_4:7617574-7617593 | None:intergenic | 25.0% |
| !!! | ATCAACTTTCACTTTTGATA+AGG | - | chr7_4:7617583-7617602 | Msa1138240:intron | 25.0% |
| !!! | TCAACTTTCACTTTTGATAA+GGG | - | chr7_4:7617584-7617603 | Msa1138240:intron | 25.0% |
| ! | TTCATTGTTTGCTTTAGTAA+TGG | - | chr7_4:7617709-7617728 | Msa1138240:intron | 25.0% |
| ! | GTATTCTATGCATATGTTTA+AGG | - | chr7_4:7617749-7617768 | Msa1138240:intron | 25.0% |
| ! | CAATGATAAAGTATAATCAC+AGG | + | chr7_4:7617781-7617800 | None:intergenic | 25.0% |
| ! | TCATATTTGTGATGTCAATT+TGG | - | chr7_4:7617835-7617854 | Msa1138240:intron | 25.0% |
| ! | ATACATCAACAAACATTACA+TGG | - | chr7_4:7618057-7618076 | Msa1138240:five_prime_UTR | 25.0% |
| AAATGTGTATGTGAGAGTTA+TGG | + | chr7_4:7614059-7614078 | None:intergenic | 30.0% | |
| ! | TATGTGTTTATTTCCCCTTT+TGG | - | chr7_4:7614544-7614563 | Msa1138240:intron | 30.0% |
| !!! | GTGTGTTTTTAAGGTATGTT+TGG | - | chr7_4:7614575-7614594 | Msa1138240:intron | 30.0% |
| !! | CTTATTTCTATAAGCACTCT+AGG | - | chr7_4:7614689-7614708 | Msa1138240:intron | 30.0% |
| CACTTATCATGTAAATGCTT+AGG | + | chr7_4:7614801-7614820 | None:intergenic | 30.0% | |
| ! | TTAAGTTGTGTAACCAAACA+TGG | - | chr7_4:7614826-7614845 | Msa1138240:intron | 30.0% |
| ATTTCAACTTTAGCCATGTT+TGG | + | chr7_4:7614842-7614861 | None:intergenic | 30.0% | |
| TTGTGTGGTTATAGATATCT+CGG | - | chr7_4:7614926-7614945 | Msa1138240:intron | 30.0% | |
| TGTTCAAGTCAATTGATCAA+TGG | + | chr7_4:7615027-7615046 | None:intergenic | 30.0% | |
| ! | CTCGATGTACTTACTATTTT+TGG | - | chr7_4:7615080-7615099 | Msa1138240:CDS | 30.0% |
| TGATTGTGATATTCCCATTT+GGG | + | chr7_4:7615139-7615158 | None:intergenic | 30.0% | |
| TTGATTGTGATATTCCCATT+TGG | + | chr7_4:7615140-7615159 | None:intergenic | 30.0% | |
| ATGGGAATATCACAATCAAA+TGG | - | chr7_4:7615141-7615160 | Msa1138240:CDS | 30.0% | |
| TGGGAATATCACAATCAAAT+GGG | - | chr7_4:7615142-7615161 | Msa1138240:CDS | 30.0% | |
| TACTTACAACATAACCATCA+GGG | + | chr7_4:7615184-7615203 | None:intergenic | 30.0% | |
| ATACTTACAACATAACCATC+AGG | + | chr7_4:7615185-7615204 | None:intergenic | 30.0% | |
| ATCAGTTCTTGCTTGAATAA+GGG | - | chr7_4:7615366-7615385 | Msa1138240:intron | 30.0% | |
| ! | TTTTGAACAATTGAATGTGC+AGG | - | chr7_4:7615539-7615558 | Msa1138240:CDS | 30.0% |
| !!! | CACTTTAACAGTTTTGTTTG+TGG | + | chr7_4:7615883-7615902 | None:intergenic | 30.0% |
| AGTTTATTCAACCAGACAAA+AGG | - | chr7_4:7615976-7615995 | Msa1138240:intron | 30.0% | |
| GTGATATTGATAGGAATCAT+AGG | + | chr7_4:7616078-7616097 | None:intergenic | 30.0% | |
| ! | GTGAAAAGTGTGATATTGAT+AGG | + | chr7_4:7616087-7616106 | None:intergenic | 30.0% |
| ACAAAAACTTCAACTATGGA+TGG | + | chr7_4:7616121-7616140 | None:intergenic | 30.0% | |
| ! | TCCATAGTTGAAGTTTTTGT+TGG | - | chr7_4:7616121-7616140 | Msa1138240:CDS | 30.0% |
| ! | TTTTTGTTGGCAACAGAAAA+TGG | - | chr7_4:7616134-7616153 | Msa1138240:CDS | 30.0% |
| TATCTTTGTCTGTGTTTGAT+AGG | - | chr7_4:7616344-7616363 | Msa1138240:CDS | 30.0% | |
| ATCGTTATAGAAAGATGAGA+GGG | + | chr7_4:7616504-7616523 | None:intergenic | 30.0% | |
| TATCGTTATAGAAAGATGAG+AGG | + | chr7_4:7616505-7616524 | None:intergenic | 30.0% | |
| TCCAATCGGAATAATTCATA+CGG | + | chr7_4:7616849-7616868 | None:intergenic | 30.0% | |
| AAGAAACAAACAAACAAGGT+GGG | + | chr7_4:7616970-7616989 | None:intergenic | 30.0% | |
| ACTCAAGAAACAAACAAACA+AGG | + | chr7_4:7616974-7616993 | None:intergenic | 30.0% | |
| GGTTAATTACTTTCCTTAGA+TGG | - | chr7_4:7617132-7617151 | Msa1138240:intron | 30.0% | |
| TACTTTCCTTAGATGGTTAA+TGG | - | chr7_4:7617139-7617158 | Msa1138240:intron | 30.0% | |
| GAATATCCATTAACCATCTA+AGG | + | chr7_4:7617148-7617167 | None:intergenic | 30.0% | |
| ! | AGATGGTTAATGGATATTCA+AGG | - | chr7_4:7617149-7617168 | Msa1138240:intron | 30.0% |
| CGTTAAAGAAATTACGTTGA+TGG | + | chr7_4:7617191-7617210 | None:intergenic | 30.0% | |
| ATTGGAACACATGAAAAAAG+TGG | + | chr7_4:7617234-7617253 | None:intergenic | 30.0% | |
| GTGTTAAACTACATGTAGAT+TGG | + | chr7_4:7617252-7617271 | None:intergenic | 30.0% | |
| TTTAACCACAAATTTGGACA+CGG | + | chr7_4:7617292-7617311 | None:intergenic | 30.0% | |
| ! | AATGATTTTCTTAATCACGC+CGG | - | chr7_4:7617515-7617534 | Msa1138240:intron | 30.0% |
| GATAAAGTATAATCACAGGT+TGG | + | chr7_4:7617777-7617796 | None:intergenic | 30.0% | |
| ! | ATTTTCAGTCTAACCAGTTT+TGG | - | chr7_4:7617810-7617829 | Msa1138240:intron | 30.0% |
| !!! | TGATGTCAATTTGGTTTTCA+AGG | - | chr7_4:7617844-7617863 | Msa1138240:intron | 30.0% |
| TTACATAGGATTCAGCATAT+TGG | - | chr7_4:7617932-7617951 | Msa1138240:five_prime_UTR | 30.0% | |
| AGAAAGAAGAAGAGAATGCA+AGG | + | chr7_4:7614132-7614151 | None:intergenic | 35.0% | |
| CTACTTTCTTTCACTTCAAC+AGG | - | chr7_4:7614150-7614169 | Msa1138240:three_prime_UTR | 35.0% | |
| TCAACAGAAAAGACACAAGA+AGG | + | chr7_4:7614379-7614398 | None:intergenic | 35.0% | |
| GAATATTAGCATAGGTTGTG+TGG | - | chr7_4:7614911-7614930 | Msa1138240:intron | 35.0% | |
| ! | ATATCTCGGTGTGTAAAAGA+TGG | - | chr7_4:7614940-7614959 | Msa1138240:intron | 35.0% |
| ! | TATCTCGGTGTGTAAAAGAT+GGG | - | chr7_4:7614941-7614960 | Msa1138240:intron | 35.0% |
| ACTTACAACATAACCATCAG+GGG | + | chr7_4:7615183-7615202 | None:intergenic | 35.0% | |
| TGTATGTTGTACACTATGCT+TGG | - | chr7_4:7615244-7615263 | Msa1138240:CDS | 35.0% | |
| !!! | GCTTGGTGTTCTAATGTTTT+TGG | - | chr7_4:7615261-7615280 | Msa1138240:CDS | 35.0% |
| !!! | CTTTTATTTCTGCCTGTGTT+CGG | - | chr7_4:7615287-7615306 | Msa1138240:CDS | 35.0% |
| ACAAAAAATGTACCGAACAC+AGG | + | chr7_4:7615302-7615321 | None:intergenic | 35.0% | |
| GATCAGTTCTTGCTTGAATA+AGG | - | chr7_4:7615365-7615384 | Msa1138240:intron | 35.0% | |
| ACGGAACAAAAACAAACACA+AGG | + | chr7_4:7615503-7615522 | None:intergenic | 35.0% | |
| ! | GGATTCTTTTTACAGCAATG+TGG | + | chr7_4:7615720-7615739 | None:intergenic | 35.0% |
| TCCAGGAAGTAAATCTACAA+CGG | + | chr7_4:7615745-7615764 | None:intergenic | 35.0% | |
| !! | TTCGCAATTTGCTGATTGTA+AGG | + | chr7_4:7615771-7615790 | None:intergenic | 35.0% |
| !!! | AACAGTTTTGTTTGTGGTTC+CGG | + | chr7_4:7615877-7615896 | None:intergenic | 35.0% |
| TCTGGTTGAATAAACTGAGT+AGG | + | chr7_4:7615972-7615991 | None:intergenic | 35.0% | |
| GCCAACAAAAACTTCAACTA+TGG | + | chr7_4:7616125-7616144 | None:intergenic | 35.0% | |
| TCAAACACAGACAAAGATAC+CGG | + | chr7_4:7616343-7616362 | None:intergenic | 35.0% | |
| TTTGATTCATTGCAGTGACA+TGG | - | chr7_4:7616420-7616439 | Msa1138240:CDS | 35.0% | |
| TGACTAGTACATTGAACCAA+AGG | + | chr7_4:7616739-7616758 | None:intergenic | 35.0% | |
| GCATGTTAAGGTTAACTACA+AGG | - | chr7_4:7616783-7616802 | Msa1138240:intron | 35.0% | |
| AGGTTAACTACAAGGAATAC+TGG | - | chr7_4:7616791-7616810 | Msa1138240:intron | 35.0% | |
| ACCGTATGAATTATTCCGAT+TGG | - | chr7_4:7616845-7616864 | Msa1138240:CDS | 35.0% | |
| GAATTATTCCGATTGGAACT+TGG | - | chr7_4:7616852-7616871 | Msa1138240:CDS | 35.0% | |
| CAAGAAACAAACAAACAAGG+TGG | + | chr7_4:7616971-7616990 | None:intergenic | 35.0% | |
| TTTGCGACAACAAATCTAAG+TGG | - | chr7_4:7617089-7617108 | Msa1138240:intron | 35.0% | |
| ! | CACGGTTATCCATATTTTTC+AGG | + | chr7_4:7617274-7617293 | None:intergenic | 35.0% |
| GGTTAAAGAATTTCAACACC+TGG | - | chr7_4:7617305-7617324 | Msa1138240:intron | 35.0% | |
| ! | ACTTGGTTAATGGATATACC+AGG | + | chr7_4:7617326-7617345 | None:intergenic | 35.0% |
| AGATGATACAGCAATGCTTT+GGG | - | chr7_4:7617478-7617497 | Msa1138240:intron | 35.0% | |
| !! | TTTCACTTTTGATAAGGGCT+GGG | - | chr7_4:7617589-7617608 | Msa1138240:intron | 35.0% |
| ATAGAATACTAAGACTGCCA+AGG | + | chr7_4:7617738-7617757 | None:intergenic | 35.0% | |
| GAATCCTATGTAACAATCCT+GGG | + | chr7_4:7617925-7617944 | None:intergenic | 35.0% | |
| TGAATCCTATGTAACAATCC+TGG | + | chr7_4:7617926-7617945 | None:intergenic | 35.0% | |
| GGAAGTGAAGAGAAGACTAT+GGG | + | chr7_4:7614015-7614034 | None:intergenic | 40.0% | |
| TGGAAGTGAAGAGAAGACTA+TGG | + | chr7_4:7614016-7614035 | None:intergenic | 40.0% | |
| !! | TGTTGTTGGTTCAAGATCTG+TGG | + | chr7_4:7614036-7614055 | None:intergenic | 40.0% |
| !! | TGTGAGAGTTATGGTGTTGT+TGG | + | chr7_4:7614050-7614069 | None:intergenic | 40.0% |
| ! | TTATTTCCCCTTTTGGCGTT+TGG | - | chr7_4:7614551-7614570 | Msa1138240:intron | 40.0% |
| !! | GCGTTTGGAGTGTGTTTTTA+AGG | - | chr7_4:7614566-7614585 | Msa1138240:intron | 40.0% |
| !! | GTTTGGATTGACTTGTTTGC+TGG | - | chr7_4:7614592-7614611 | Msa1138240:intron | 40.0% |
| TATGATCCACTTGACCCAAA+TGG | - | chr7_4:7615122-7615141 | Msa1138240:CDS | 40.0% | |
| ATGATCCACTTGACCCAAAT+GGG | - | chr7_4:7615123-7615142 | Msa1138240:CDS | 40.0% | |
| ATATTCCCATTTGGGTCAAG+TGG | + | chr7_4:7615131-7615150 | None:intergenic | 40.0% | |
| ATTATACAATGGACCCCTGA+TGG | - | chr7_4:7615167-7615186 | Msa1138240:CDS | 40.0% | |
| GAAGTTGTTCATCGTAACTG+TGG | + | chr7_4:7615565-7615584 | None:intergenic | 40.0% | |
| AAGCGATGTGACGATATTGT+TGG | + | chr7_4:7615587-7615606 | None:intergenic | 40.0% | |
| ! | GAGGTAATCTGGAGTATGAT+GGG | - | chr7_4:7615645-7615664 | Msa1138240:intron | 40.0% |
| TGAACAATCACCTTGTTCTG+TGG | + | chr7_4:7615679-7615698 | None:intergenic | 40.0% | |
| GGAAGTAAATCTACAACGGT+TGG | + | chr7_4:7615741-7615760 | None:intergenic | 40.0% | |
| ACCGTTGTAGATTTACTTCC+TGG | - | chr7_4:7615741-7615760 | Msa1138240:intron | 40.0% | |
| CAAATTGCGAATTGCTGCAA+AGG | - | chr7_4:7615780-7615799 | Msa1138240:intron | 40.0% | |
| ! | GCACTCAAGGTGAAGTTTTT+AGG | + | chr7_4:7615906-7615925 | None:intergenic | 40.0% |
| ! | GTAGGTCTCACAATTTTTGC+CGG | + | chr7_4:7615954-7615973 | None:intergenic | 40.0% |
| ! | GCACTGATACTTCAGATTGA+AGG | - | chr7_4:7616215-7616234 | Msa1138240:CDS | 40.0% |
| !! | TATCGGTGTTTTGTCAGTGT+TGG | + | chr7_4:7616253-7616272 | None:intergenic | 40.0% |
| AAATACGCCACATTTGGCAT+CGG | - | chr7_4:7616681-7616700 | Msa1138240:intron | 40.0% | |
| AGTTAACCTTAACATGCCAG+TGG | + | chr7_4:7616780-7616799 | None:intergenic | 40.0% | |
| CTGAACAACCAAGTTCCAAT+CGG | + | chr7_4:7616863-7616882 | None:intergenic | 40.0% | |
| TGAGTCAGATTGTCGAAGTT+TGG | + | chr7_4:7616889-7616908 | None:intergenic | 40.0% | |
| GTGGTTAACACAGTCCAAAT+AGG | - | chr7_4:7617108-7617127 | Msa1138240:intron | 40.0% | |
| GTTAACACAGTCCAAATAGG+TGG | - | chr7_4:7617111-7617130 | Msa1138240:intron | 40.0% | |
| GATAACCGTGTCCAAATTTG+TGG | - | chr7_4:7617284-7617303 | Msa1138240:intron | 40.0% | |
| CAGATGATACAGCAATGCTT+TGG | - | chr7_4:7617477-7617496 | Msa1138240:intron | 40.0% | |
| GATGATACAGCAATGCTTTG+GGG | - | chr7_4:7617479-7617498 | Msa1138240:intron | 40.0% | |
| !! | CTTTCACTTTTGATAAGGGC+TGG | - | chr7_4:7617588-7617607 | Msa1138240:intron | 40.0% |
| TATCCATGGTTACCTAATGC+TGG | - | chr7_4:7617671-7617690 | Msa1138240:intron | 40.0% | |
| CACAAATATGACGCCAAAAC+TGG | + | chr7_4:7617826-7617845 | None:intergenic | 40.0% | |
| AGAGGGACTGACTATATACA+CGG | - | chr7_4:7617872-7617891 | Msa1138240:CDS | 40.0% | |
| CATAGGATTCAGCATATTGG+TGG | - | chr7_4:7617935-7617954 | Msa1138240:five_prime_UTR | 40.0% | |
| TAAGCCTGATGAATCTTGTG+CGG | - | chr7_4:7618085-7618104 | Msa1138240:five_prime_UTR | 40.0% | |
| AAGAACAGGAGAAGACTGAC+TGG | + | chr7_4:7613950-7613969 | None:intergenic | 45.0% | |
| AGAGAGAGAGTGGAAGAATG+TGG | + | chr7_4:7613983-7614002 | None:intergenic | 45.0% | |
| ACACACTCCAAACGCCAAAA+GGG | + | chr7_4:7614561-7614580 | None:intergenic | 45.0% | |
| AACACACTCCAAACGCCAAA+AGG | + | chr7_4:7614562-7614581 | None:intergenic | 45.0% | |
| AGGATGGACATGGGCAAAAA+AGG | - | chr7_4:7615623-7615642 | Msa1138240:intron | 45.0% | |
| ATGGACATGGGCAAAAAAGG+AGG | - | chr7_4:7615626-7615645 | Msa1138240:intron | 45.0% | |
| GGGCAAAAAAGGAGGTAATC+TGG | - | chr7_4:7615634-7615653 | Msa1138240:intron | 45.0% | |
| ! | GGAGGTAATCTGGAGTATGA+TGG | - | chr7_4:7615644-7615663 | Msa1138240:intron | 45.0% |
| ATTGCGAATTGCTGCAAAGG+TGG | - | chr7_4:7615783-7615802 | Msa1138240:intron | 45.0% | |
| AAGGTGGTGTGCTTAGTTCA+TGG | - | chr7_4:7615799-7615818 | Msa1138240:intron | 45.0% | |
| AGGTGGTGTGCTTAGTTCAT+GGG | - | chr7_4:7615800-7615819 | Msa1138240:intron | 45.0% | |
| AAGATCCTACCATGGCAGTT+GGG | - | chr7_4:7615826-7615845 | Msa1138240:intron | 45.0% | |
| !! | CAAATCAGTGTTGGTAGAGC+CGG | - | chr7_4:7615855-7615874 | Msa1138240:intron | 45.0% |
| ! | TGAGTCACTCTCCTTTTGTC+TGG | + | chr7_4:7615990-7616009 | None:intergenic | 45.0% |
| GGTGATGAGTAGATATCAGC+AGG | - | chr7_4:7616365-7616384 | Msa1138240:CDS | 45.0% | |
| CCAGAGTAACTCATCTCAGT+CGG | - | chr7_4:7616559-7616578 | Msa1138240:intron | 45.0% | |
| CAGAGTAACTCATCTCAGTC+GGG | - | chr7_4:7616560-7616579 | Msa1138240:intron | 45.0% | |
| AGAGTAACTCATCTCAGTCG+GGG | - | chr7_4:7616561-7616580 | Msa1138240:intron | 45.0% | |
| CAGTCCAAATACGCCACATT+TGG | - | chr7_4:7616675-7616694 | Msa1138240:intron | 45.0% | |
| GATGCCAAATGTGGCGTATT+TGG | + | chr7_4:7616682-7616701 | None:intergenic | 45.0% | |
| GAAACAACCGATGCCAAATG+TGG | + | chr7_4:7616691-7616710 | None:intergenic | 45.0% | |
| !! | CATTTGGCATCGGTTGTTTC+TGG | - | chr7_4:7616691-7616710 | Msa1138240:intron | 45.0% |
| !! | GCATCGGTTGTTTCTGGTAA+TGG | - | chr7_4:7616697-7616716 | Msa1138240:intron | 45.0% |
| ! | CCTTAACATGCCAGTGGATT+CGG | + | chr7_4:7616774-7616793 | None:intergenic | 45.0% |
| CGGATTGAACATTGCCACTA+GGG | + | chr7_4:7617541-7617560 | None:intergenic | 45.0% | |
| TCGGATTGAACATTGCCACT+AGG | + | chr7_4:7617542-7617561 | None:intergenic | 45.0% | |
| ATCCTTTCGGAAGAGTAGCT+CGG | + | chr7_4:7617561-7617580 | None:intergenic | 45.0% | |
| CGTTGAAGTAGATCCTTCGA+GGG | + | chr7_4:7617619-7617638 | None:intergenic | 45.0% | |
| CCTCGAAGGATCTACTTCAA+CGG | - | chr7_4:7617617-7617636 | Msa1138240:intron | 45.0% | |
| AACCATGGATAAGCATCAGG+AGG | + | chr7_4:7617662-7617681 | None:intergenic | 45.0% | |
| GGTAACCATGGATAAGCATC+AGG | + | chr7_4:7617665-7617684 | None:intergenic | 45.0% | |
| GAACCAGCATTAGGTAACCA+TGG | + | chr7_4:7617677-7617696 | None:intergenic | 45.0% | |
| !! | GGTTACCTAATGCTGGTTCT+CGG | - | chr7_4:7617678-7617697 | Msa1138240:intron | 45.0% |
| TGCTTTAGTAATGGCCTCCT+TGG | - | chr7_4:7617718-7617737 | Msa1138240:intron | 45.0% | |
| GAATACTAAGACTGCCAAGG+AGG | + | chr7_4:7617735-7617754 | None:intergenic | 45.0% | |
| !! | TTGGTTTTCAAGGCGATCAG+AGG | - | chr7_4:7617854-7617873 | Msa1138240:intron | 45.0% |
| !! | TGGTTTTCAAGGCGATCAGA+GGG | - | chr7_4:7617855-7617874 | Msa1138240:intron | 45.0% |
| GAGGGACTGACTATATACAC+GGG | - | chr7_4:7617873-7617892 | Msa1138240:CDS | 45.0% | |
| GCATCCCAGGATTGTTACAT+AGG | - | chr7_4:7617918-7617937 | Msa1138240:exon | 45.0% | |
| AAGTCCGCACAAGATTCATC+AGG | + | chr7_4:7618092-7618111 | None:intergenic | 45.0% | |
| CAGGAGAAGACTGACTGGAT+GGG | + | chr7_4:7613945-7613964 | None:intergenic | 50.0% | |
| ACAGGAGAAGACTGACTGGA+TGG | + | chr7_4:7613946-7613965 | None:intergenic | 50.0% | |
| GAAGAGAGAGAGAGAGAGAG+TGG | + | chr7_4:7613993-7614012 | None:intergenic | 50.0% | |
| CACACTCCAAACGCCAAAAG+GGG | + | chr7_4:7614560-7614579 | None:intergenic | 50.0% | |
| CTGGTCACTAGGATGGACAT+GGG | - | chr7_4:7615614-7615633 | Msa1138240:intron | 50.0% | |
| GGATCACAGACCACAGAACA+AGG | - | chr7_4:7615666-7615685 | Msa1138240:intron | 50.0% | |
| ! | TGCTGATTGTAAGGCGTTCC+AGG | + | chr7_4:7615762-7615781 | None:intergenic | 50.0% |
| ATGGGCTCAAGATCCTACCA+TGG | - | chr7_4:7615818-7615837 | Msa1138240:intron | 50.0% | |
| CAAGATCCTACCATGGCAGT+TGG | - | chr7_4:7615825-7615844 | Msa1138240:intron | 50.0% | |
| AGATCCTACCATGGCAGTTG+GGG | - | chr7_4:7615827-7615846 | Msa1138240:intron | 50.0% | |
| ! | GGGGCGTTTCAAATCAGTGT+TGG | - | chr7_4:7615846-7615865 | Msa1138240:intron | 50.0% |
| AAACTTCACCTTGAGTGCCC+CGG | - | chr7_4:7615908-7615927 | Msa1138240:intron | 50.0% | |
| ACAAGTATAACCAGGTCCCG+GGG | + | chr7_4:7615928-7615947 | None:intergenic | 50.0% | |
| CACAAGTATAACCAGGTCCC+GGG | + | chr7_4:7615929-7615948 | None:intergenic | 50.0% | |
| CCACAAGTATAACCAGGTCC+CGG | + | chr7_4:7615930-7615949 | None:intergenic | 50.0% | |
| CGGGACCTGGTTATACTTGT+GGG | - | chr7_4:7615928-7615947 | Msa1138240:intron | 50.0% | |
| ACCTGGTTATACTTGTGGGC+CGG | - | chr7_4:7615932-7615951 | Msa1138240:intron | 50.0% | |
| GAGAGGGAGACACAACAAGT+GGG | + | chr7_4:7616488-7616507 | None:intergenic | 50.0% | |
| TGAGAGGGAGACACAACAAG+TGG | + | chr7_4:7616489-7616508 | None:intergenic | 50.0% | |
| ACATGTTGGGCAGGGTACAA+TGG | + | chr7_4:7616528-7616547 | None:intergenic | 50.0% | |
| CCGACTGAGATGAGTTACTC+TGG | + | chr7_4:7616562-7616581 | None:intergenic | 50.0% | |
| TGTGTCCAATCCGAATCCAC+TGG | - | chr7_4:7616761-7616780 | Msa1138240:intron | 50.0% | |
| ! | ACATGCCAGTGGATTCGGAT+TGG | + | chr7_4:7616769-7616788 | None:intergenic | 50.0% |
| CCGAATCCACTGGCATGTTA+AGG | - | chr7_4:7616771-7616790 | Msa1138240:intron | 50.0% | |
| CAAGGAATACTGGCGTGTGA+AGG | - | chr7_4:7616801-7616820 | Msa1138240:intron | 50.0% | |
| TTGAACATTGCCACTAGGGC+CGG | + | chr7_4:7617537-7617556 | None:intergenic | 50.0% | |
| ATCCGAGCTACTCTTCCGAA+AGG | - | chr7_4:7617556-7617575 | Msa1138240:intron | 50.0% | |
| CCGTTGAAGTAGATCCTTCG+AGG | + | chr7_4:7617620-7617639 | None:intergenic | 50.0% | |
| CATGGATAAGCATCAGGAGG+TGG | + | chr7_4:7617659-7617678 | None:intergenic | 50.0% | |
| CACCTCCTGATGCTTATCCA+TGG | - | chr7_4:7617657-7617676 | Msa1138240:intron | 50.0% | |
| TCTTGCCGAGAACCAGCATT+AGG | + | chr7_4:7617686-7617705 | None:intergenic | 50.0% | |
| !! | TAATGCTGGTTCTCGGCAAG+AGG | - | chr7_4:7617685-7617704 | Msa1138240:intron | 50.0% |
| GGACTGACTATATACACGGG+TGG | - | chr7_4:7617876-7617895 | Msa1138240:CDS | 50.0% | |
| ! | GAGATTTGCTCATGCATCCC+AGG | - | chr7_4:7617905-7617924 | Msa1138240:CDS | 50.0% |
| TATCGTCACATCGCTTCCCC+TGG | - | chr7_4:7615591-7615610 | Msa1138240:intron | 55.0% | |
| TCCATCCTAGTGACCAGCCA+GGG | + | chr7_4:7615611-7615630 | None:intergenic | 55.0% | |
| GCTGGTCACTAGGATGGACA+TGG | - | chr7_4:7615613-7615632 | Msa1138240:intron | 55.0% | |
| TTGAAACGCCCCAACTGCCA+TGG | + | chr7_4:7615838-7615857 | None:intergenic | 55.0% | |
| AACTTCACCTTGAGTGCCCC+GGG | - | chr7_4:7615909-7615928 | Msa1138240:intron | 55.0% | |
| CCGGGACCTGGTTATACTTG+TGG | - | chr7_4:7615927-7615946 | Msa1138240:intron | 55.0% | |
| CGACGTGTCAGTGTTGTGTC+CGG | - | chr7_4:7616321-7616340 | Msa1138240:CDS | 55.0% | |
| CCACATGCACATGTTGGGCA+GGG | + | chr7_4:7616536-7616555 | None:intergenic | 55.0% | |
| GGCAGCCACATGCACATGTT+GGG | + | chr7_4:7616541-7616560 | None:intergenic | 55.0% | |
| TGGCAGCCACATGCACATGT+TGG | + | chr7_4:7616542-7616561 | None:intergenic | 55.0% | |
| CCATCCTAGTGACCAGCCAG+GGG | + | chr7_4:7615610-7615629 | None:intergenic | 60.0% | |
| GTCCATCCTAGTGACCAGCC+AGG | + | chr7_4:7615612-7615631 | None:intergenic | 60.0% | |
| AACGCCCCAACTGCCATGGT+AGG | + | chr7_4:7615834-7615853 | None:intergenic | 60.0% | |
| GCCGGCCCACAAGTATAACC+AGG | + | chr7_4:7615936-7615955 | None:intergenic | 60.0% | |
| CCCTGCCCAACATGTGCATG+TGG | - | chr7_4:7616533-7616552 | Msa1138240:intron | 60.0% | |
| GCCACATGCACATGTTGGGC+AGG | + | chr7_4:7616537-7616556 | None:intergenic | 60.0% | |
| CTTAATCACGCCGGCCCTAG+TGG | - | chr7_4:7617524-7617543 | Msa1138240:intron | 60.0% | |
| GTCACATCGCTTCCCCTGGC+TGG | - | chr7_4:7615595-7615614 | Msa1138240:intron | 65.0% | |
| ! | GCTTCCCCTGGCTGGTCACT+AGG | - | chr7_4:7615603-7615622 | Msa1138240:intron | 65.0% |
| ! | CCCCTGGCTGGTCACTAGGA+TGG | - | chr7_4:7615607-7615626 | Msa1138240:intron | 65.0% |
| AGGGCTGGGCTTTCCCTCGA+AGG | - | chr7_4:7617603-7617622 | Msa1138240:intron | 65.0% | |
| ACCTTGAGTGCCCCGGGACC+TGG | - | chr7_4:7615915-7615934 | Msa1138240:intron | 70.0% | |
| ! | ACCAGGTCCCGGGGCACTCA+AGG | + | chr7_4:7615919-7615938 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 7613917 | 7618113 | 7613917 | ID=Msa1138240;Name=Msa1138240 |
| chr7_4 | mRNA | 7613917 | 7618113 | 7613917 | ID=Msa1138240-mRNA-1;Parent=Msa1138240;Name=Msa1138240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=182|1|1|1|1|1|6|344|445 |
| chr7_4 | exon | 7613917 | 7614550 | 7613917 | ID=Msa1138240-mRNA-1:exon:2109;Parent=Msa1138240-mRNA-1 |
| chr7_4 | exon | 7615075 | 7615352 | 7615075 | ID=Msa1138240-mRNA-1:exon:2108;Parent=Msa1138240-mRNA-1 |
| chr7_4 | exon | 7615436 | 7615595 | 7615436 | ID=Msa1138240-mRNA-1:exon:2107;Parent=Msa1138240-mRNA-1 |
| chr7_4 | exon | 7616013 | 7616469 | 7616013 | ID=Msa1138240-mRNA-1:exon:2106;Parent=Msa1138240-mRNA-1 |
| chr7_4 | exon | 7616834 | 7616913 | 7616834 | ID=Msa1138240-mRNA-1:exon:2105;Parent=Msa1138240-mRNA-1 |
| chr7_4 | exon | 7617859 | 7618113 | 7617859 | ID=Msa1138240-mRNA-1:exon:2104;Parent=Msa1138240-mRNA-1 |
| chr7_4 | five_prime_UTR | 7617932 | 7618113 | 7617932 | ID=Msa1138240-mRNA-1:five_prime_utr;Parent=Msa1138240-mRNA-1 |
| chr7_4 | CDS | 7617859 | 7617931 | 7617859 | ID=Msa1138240-mRNA-1:cds;Parent=Msa1138240-mRNA-1 |
| chr7_4 | CDS | 7616834 | 7616913 | 7616834 | ID=Msa1138240-mRNA-1:cds;Parent=Msa1138240-mRNA-1 |
| chr7_4 | CDS | 7616013 | 7616469 | 7616013 | ID=Msa1138240-mRNA-1:cds;Parent=Msa1138240-mRNA-1 |
| chr7_4 | CDS | 7615436 | 7615595 | 7615436 | ID=Msa1138240-mRNA-1:cds;Parent=Msa1138240-mRNA-1 |
| chr7_4 | CDS | 7615075 | 7615352 | 7615075 | ID=Msa1138240-mRNA-1:cds;Parent=Msa1138240-mRNA-1 |
| chr7_4 | CDS | 7614261 | 7614550 | 7614261 | ID=Msa1138240-mRNA-1:cds;Parent=Msa1138240-mRNA-1 |
| chr7_4 | three_prime_UTR | 7613917 | 7614260 | 7613917 | ID=Msa1138240-mRNA-1:three_prime_utr;Parent=Msa1138240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
