Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366770 | GAU18627.1 | 91.304 | 115 | 10 | 0 | 2 | 116 | 106 | 220 | 7.52e-72 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366770 | sp|P25317|GSTXA_TOBAC | 72.566 | 113 | 31 | 0 | 3 | 115 | 107 | 219 | 1.82e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366770 | A0A2Z6MK84 | 91.304 | 115 | 10 | 0 | 2 | 116 | 106 | 220 | 3.59e-72 | 223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0366770 | 0.800397 | 1.468940e-48 | -8.615850e-47 |
| Msa0366770 | Msa0366780 | 0.802786 | 4.755458e-49 | -8.615850e-47 |
| Msa0366770 | Msa0769720 | 0.817158 | 3.812857e-52 | -8.615850e-47 |
| Msa0366770 | Msa1113100 | 0.818780 | 1.639722e-52 | -8.615850e-47 |
| Msa0366770 | Msa1238680 | 0.816612 | 5.055393e-52 | -8.615850e-47 |
| Msa0366770 | Msa1459190 | 0.808712 | 2.707053e-50 | -8.615850e-47 |
| Msa0316470 | Msa0366770 | 0.807843 | 4.145675e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366770 | MtrunA17_Chr3g0107731 | 92.174 | 115 | 9 | 0 | 2 | 116 | 110 | 224 | 2.38e-75 | 222 |
| Msa0366770 | MtrunA17_Chr3g0107741 | 86.087 | 115 | 16 | 0 | 2 | 116 | 110 | 224 | 4.48e-69 | 206 |
| Msa0366770 | MtrunA17_Chr2g0312771 | 62.281 | 114 | 43 | 0 | 3 | 116 | 106 | 219 | 7.83e-51 | 160 |
| Msa0366770 | MtrunA17_Chr2g0312751 | 60.526 | 114 | 45 | 0 | 3 | 116 | 106 | 219 | 3.40e-49 | 155 |
| Msa0366770 | MtrunA17_Chr2g0312681 | 57.895 | 114 | 48 | 0 | 3 | 116 | 106 | 219 | 3.94e-46 | 148 |
| Msa0366770 | MtrunA17_Chr2g0312781 | 57.798 | 109 | 46 | 0 | 3 | 111 | 123 | 231 | 7.22e-45 | 145 |
| Msa0366770 | MtrunA17_Chr2g0312811 | 57.018 | 114 | 49 | 0 | 3 | 116 | 108 | 221 | 2.38e-44 | 143 |
| Msa0366770 | MtrunA17_Chr2g0312731 | 57.018 | 114 | 49 | 0 | 3 | 116 | 106 | 219 | 2.19e-43 | 141 |
| Msa0366770 | MtrunA17_Chr2g0312791 | 60.870 | 115 | 43 | 2 | 3 | 115 | 106 | 220 | 3.86e-42 | 138 |
| Msa0366770 | MtrunA17_Chr8g0357211 | 51.786 | 112 | 54 | 0 | 5 | 116 | 108 | 219 | 1.27e-38 | 129 |
| Msa0366770 | MtrunA17_Chr2g0312691 | 58.772 | 114 | 47 | 0 | 3 | 116 | 106 | 219 | 1.72e-38 | 128 |
| Msa0366770 | MtrunA17_Chr8g0357241 | 51.786 | 112 | 54 | 0 | 5 | 116 | 108 | 219 | 1.89e-38 | 128 |
| Msa0366770 | MtrunA17_Chr5g0433801 | 46.491 | 114 | 61 | 0 | 3 | 116 | 108 | 221 | 1.26e-37 | 126 |
| Msa0366770 | MtrunA17_Chr2g0312711 | 57.609 | 92 | 39 | 0 | 25 | 116 | 127 | 218 | 4.32e-35 | 120 |
| Msa0366770 | MtrunA17_Chr2g0312721 | 44.737 | 114 | 63 | 0 | 3 | 116 | 106 | 219 | 9.03e-30 | 106 |
| Msa0366770 | MtrunA17_Chr4g0069471 | 54.545 | 77 | 33 | 1 | 3 | 79 | 128 | 202 | 3.04e-23 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366770 | AT1G78370.1 | 65.714 | 105 | 36 | 0 | 9 | 113 | 112 | 216 | 1.32e-46 | 149 |
| Msa0366770 | AT1G17180.1 | 60.526 | 114 | 45 | 0 | 3 | 116 | 106 | 219 | 2.17e-45 | 146 |
| Msa0366770 | AT1G78380.1 | 60.550 | 109 | 43 | 0 | 3 | 111 | 106 | 214 | 2.84e-45 | 146 |
| Msa0366770 | AT1G53680.1 | 56.757 | 111 | 47 | 1 | 7 | 116 | 114 | 224 | 6.58e-43 | 140 |
| Msa0366770 | AT1G78360.1 | 55.263 | 114 | 51 | 0 | 3 | 116 | 107 | 220 | 2.64e-42 | 139 |
| Msa0366770 | AT1G17170.1 | 58.182 | 110 | 45 | 1 | 7 | 116 | 110 | 218 | 3.39e-41 | 135 |
| Msa0366770 | AT1G78320.2 | 58.947 | 95 | 39 | 0 | 8 | 102 | 84 | 178 | 5.10e-35 | 119 |
| Msa0366770 | AT1G78340.1 | 51.376 | 109 | 53 | 0 | 3 | 111 | 106 | 214 | 1.72e-34 | 119 |
| Msa0366770 | AT1G78320.1 | 58.947 | 95 | 39 | 0 | 8 | 102 | 111 | 205 | 1.87e-34 | 119 |
| Msa0366770 | AT3G43800.1 | 46.429 | 112 | 59 | 1 | 3 | 113 | 110 | 221 | 2.86e-34 | 118 |
| Msa0366770 | AT1G17190.1 | 45.946 | 111 | 60 | 0 | 4 | 114 | 108 | 218 | 7.62e-29 | 104 |
Find 26 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGACAAAACATATTT+TGG | 0.170928 | 3_1:+61709145 | Msa0366770:CDS |
| CCTCATCCTCACAAAATCTA+TGG | 0.303260 | 3_1:+61709328 | Msa0366770:CDS |
| CTCTTATACCCTTCACTAGT+TGG | 0.329236 | 3_1:+61709197 | Msa0366770:CDS |
| ATGTCCTAAGCTTGTGGCTT+GGG | 0.384787 | 3_1:+61709264 | Msa0366770:CDS |
| TTGGCCCAAGCCACAAGCTT+AGG | 0.419595 | 3_1:-61709268 | None:intergenic |
| GAATGCTTGAAGACTCTAGA+AGG | 0.458394 | 3_1:+61709118 | Msa0366770:CDS |
| AGCTTGTGGCTTGGGCCAAA+AGG | 0.465671 | 3_1:+61709272 | Msa0366770:CDS |
| TTTACACTTACGAGACATAT+GGG | 0.474634 | 3_1:+61709221 | Msa0366770:CDS |
| GATATACAACATTGGAAAGA+AGG | 0.483460 | 3_1:+61709045 | Msa0366770:intron |
| AAGACTCTAGAAGGTGAGCT+TGG | 0.503893 | 3_1:+61709127 | Msa0366770:CDS |
| GGCCAAAAGGTGTATGGAAA+AGG | 0.504837 | 3_1:+61709285 | Msa0366770:CDS |
| AAGAAGGTATGGACAGGAAA+GGG | 0.519335 | 3_1:+61709061 | Msa0366770:CDS |
| AATGTCCTAAGCTTGTGGCT+TGG | 0.535005 | 3_1:+61709263 | Msa0366770:CDS |
| ACAACATTGGAAAGAAGGTA+TGG | 0.535319 | 3_1:+61709050 | Msa0366770:CDS |
| AAGGGTGAAGAACAAGAAGA+AGG | 0.543295 | 3_1:+61709079 | Msa0366770:CDS |
| TGACTTTGGGTATGTTGATG+TGG | 0.546781 | 3_1:+61709174 | Msa0366770:CDS |
| GGCTTGGGCCAAAAGGTGTA+TGG | 0.551448 | 3_1:+61709279 | Msa0366770:CDS |
| AGTGTAAAACCAACTAGTGA+AGG | 0.558553 | 3_1:-61709206 | None:intergenic |
| ATTGGAAAGAAGGTATGGAC+AGG | 0.560806 | 3_1:+61709055 | Msa0366770:CDS |
| ATGCAATATAAACAAAGCCA+TGG | 0.568014 | 3_1:+61709358 | Msa0366770:CDS |
| GTGTATGGAAAAGGAGAGTG+TGG | 0.593764 | 3_1:+61709294 | Msa0366770:CDS |
| GAAAGAATGTCCTAAGCTTG+TGG | 0.598040 | 3_1:+61709258 | Msa0366770:CDS |
| ACAATCTCTAATCAAGTCCA+TGG | 0.605356 | 3_1:-61709375 | None:intergenic |
| AAAGAAGGTATGGACAGGAA+AGG | 0.623553 | 3_1:+61709060 | Msa0366770:CDS |
| GTGTAAAACCAACTAGTGAA+GGG | 0.625155 | 3_1:-61709205 | None:intergenic |
| TTGATGTAGATATACAACAT+TGG | 0.625837 | 3_1:+61709037 | Msa0366770:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTAAAAAAATTATATGTT+TGG | - | chr3_1:61708974-61708993 | None:intergenic | 10.0% |
| !!! | CTTTAAAAAAATTATATGTT+TGG | - | chr3_1:61708974-61708993 | None:intergenic | 10.0% |
| !! | NNNNNNNTGGTAGTTTAATA+AGG | + | chr3_1:61708407-61708426 | Msa0366770:intron | 15.0% |
| !! | NNNNNNTGGTAGTTTAATAA+GGG | + | chr3_1:61708408-61708427 | Msa0366770:intron | 15.0% |
| !! | NNNNNNNTGGTAGTTTAATA+AGG | + | chr3_1:61708407-61708426 | Msa0366770:intron | 15.0% |
| !! | NNNNNNTGGTAGTTTAATAA+GGG | + | chr3_1:61708408-61708427 | Msa0366770:intron | 15.0% |
| !! | NNNNNTGGTAGTTTAATAAG+GGG | + | chr3_1:61708409-61708428 | Msa0366770:intron | 20.0% |
| !!! | TCAAGTCTTGATTATTTTTT+TGG | + | chr3_1:61708554-61708573 | Msa0366770:intron | 20.0% |
| !! | TATCTACTTAAGCATTAATA+TGG | - | chr3_1:61708699-61708718 | None:intergenic | 20.0% |
| !! | CAAATATGCTACAATATTTA+TGG | - | chr3_1:61708812-61708831 | None:intergenic | 20.0% |
| !! | CATAAATATTGTAGCATATT+TGG | + | chr3_1:61708810-61708829 | Msa0366770:intron | 20.0% |
| !!! | TTTTTAAAGAGTTGATTCAT+AGG | + | chr3_1:61708985-61709004 | Msa0366770:intron | 20.0% |
| !!! | TTTTAAAGAGTTGATTCATA+GGG | + | chr3_1:61708986-61709005 | Msa0366770:intron | 20.0% |
| !! | NNNNNTGGTAGTTTAATAAG+GGG | + | chr3_1:61708409-61708428 | Msa0366770:intron | 20.0% |
| !!! | TCAAGTCTTGATTATTTTTT+TGG | + | chr3_1:61708554-61708573 | Msa0366770:intron | 20.0% |
| !! | TATCTACTTAAGCATTAATA+TGG | - | chr3_1:61708699-61708718 | None:intergenic | 20.0% |
| !! | CAAATATGCTACAATATTTA+TGG | - | chr3_1:61708812-61708831 | None:intergenic | 20.0% |
| !! | CATAAATATTGTAGCATATT+TGG | + | chr3_1:61708810-61708829 | Msa0366770:intron | 20.0% |
| !!! | TTTTTAAAGAGTTGATTCAT+AGG | + | chr3_1:61708985-61709004 | Msa0366770:intron | 20.0% |
| !!! | TTTTAAAGAGTTGATTCATA+GGG | + | chr3_1:61708986-61709005 | Msa0366770:intron | 20.0% |
| !!! | GTCTTGATTATTTTTTTGGT+TGG | + | chr3_1:61708558-61708577 | Msa0366770:intron | 25.0% |
| !!! | TGACCTATTTTCTTTTTCAA+CGG | - | chr3_1:61708741-61708760 | None:intergenic | 25.0% |
| ! | CAATTTACAATTTACATGAG+AGG | + | chr3_1:61708902-61708921 | Msa0366770:intron | 25.0% |
| ! | TTGATGTAGATATACAACAT+TGG | + | chr3_1:61709037-61709056 | Msa0366770:intron | 25.0% |
| !!! | GTCTTGATTATTTTTTTGGT+TGG | + | chr3_1:61708558-61708577 | Msa0366770:intron | 25.0% |
| !!! | TGACCTATTTTCTTTTTCAA+CGG | - | chr3_1:61708741-61708760 | None:intergenic | 25.0% |
| ! | CAATTTACAATTTACATGAG+AGG | + | chr3_1:61708902-61708921 | Msa0366770:intron | 25.0% |
| ! | TTGATGTAGATATACAACAT+TGG | + | chr3_1:61709037-61709056 | Msa0366770:intron | 25.0% |
| TTCATAAAGGTTGTCTATGA+AGG | - | chr3_1:61708531-61708550 | None:intergenic | 30.0% | |
| CAAGACTTGACTATTCATAA+AGG | - | chr3_1:61708544-61708563 | None:intergenic | 30.0% | |
| GAAAAAAATGTAGTTGAGAG+TGG | - | chr3_1:61708674-61708693 | None:intergenic | 30.0% | |
| CTTCCGTTGAAAAAGAAAAT+AGG | + | chr3_1:61708735-61708754 | Msa0366770:intron | 30.0% | |
| ! | TTGTAAATTGTTTGCCACTT+GGG | - | chr3_1:61708892-61708911 | None:intergenic | 30.0% |
| ATTGTAAATTGTTTGCCACT+TGG | - | chr3_1:61708893-61708912 | None:intergenic | 30.0% | |
| GGTATCATGGTCTAATTTAT+TGG | + | chr3_1:61709007-61709026 | Msa0366770:intron | 30.0% | |
| GATATACAACATTGGAAAGA+AGG | + | chr3_1:61709045-61709064 | Msa0366770:intron | 30.0% | |
| ! | CTTGGAGACAAAACATATTT+TGG | + | chr3_1:61709145-61709164 | Msa0366770:CDS | 30.0% |
| ! | TTTTACACTTACGAGACATA+TGG | + | chr3_1:61709220-61709239 | Msa0366770:CDS | 30.0% |
| TTTACACTTACGAGACATAT+GGG | + | chr3_1:61709221-61709240 | Msa0366770:CDS | 30.0% | |
| ATGCAATATAAACAAAGCCA+TGG | + | chr3_1:61709358-61709377 | Msa0366770:CDS | 30.0% | |
| TTCATAAAGGTTGTCTATGA+AGG | - | chr3_1:61708531-61708550 | None:intergenic | 30.0% | |
| CAAGACTTGACTATTCATAA+AGG | - | chr3_1:61708544-61708563 | None:intergenic | 30.0% | |
| GAAAAAAATGTAGTTGAGAG+TGG | - | chr3_1:61708674-61708693 | None:intergenic | 30.0% | |
| CTTCCGTTGAAAAAGAAAAT+AGG | + | chr3_1:61708735-61708754 | Msa0366770:intron | 30.0% | |
| ! | TTGTAAATTGTTTGCCACTT+GGG | - | chr3_1:61708892-61708911 | None:intergenic | 30.0% |
| ATTGTAAATTGTTTGCCACT+TGG | - | chr3_1:61708893-61708912 | None:intergenic | 30.0% | |
| GGTATCATGGTCTAATTTAT+TGG | + | chr3_1:61709007-61709026 | Msa0366770:intron | 30.0% | |
| GATATACAACATTGGAAAGA+AGG | + | chr3_1:61709045-61709064 | Msa0366770:intron | 30.0% | |
| ! | CTTGGAGACAAAACATATTT+TGG | + | chr3_1:61709145-61709164 | Msa0366770:CDS | 30.0% |
| ! | TTTTACACTTACGAGACATA+TGG | + | chr3_1:61709220-61709239 | Msa0366770:CDS | 30.0% |
| TTTACACTTACGAGACATAT+GGG | + | chr3_1:61709221-61709240 | Msa0366770:CDS | 30.0% | |
| ATGCAATATAAACAAAGCCA+TGG | + | chr3_1:61709358-61709377 | Msa0366770:CDS | 30.0% | |
| ATGATCGATCGTTAAGAATG+AGG | - | chr3_1:61708477-61708496 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTGGTCACGTTAT+TGG | + | chr3_1:61708570-61708589 | Msa0366770:intron | 35.0% |
| CAAAATTAGTCCGACAAAGA+TGG | - | chr3_1:61708609-61708628 | None:intergenic | 35.0% | |
| ! | CATCTTTGTCGGACTAATTT+TGG | + | chr3_1:61708607-61708626 | Msa0366770:intron | 35.0% |
| ! | AGTTGATTCATAGGGTATCA+TGG | + | chr3_1:61708994-61709013 | Msa0366770:intron | 35.0% |
| ACAACATTGGAAAGAAGGTA+TGG | + | chr3_1:61709050-61709069 | Msa0366770:CDS | 35.0% | |
| !! | GGAGACAAAACATATTTTGG+TGG | + | chr3_1:61709148-61709167 | Msa0366770:CDS | 35.0% |
| !!! | TATTTTGGTGGAGATGACTT+TGG | + | chr3_1:61709160-61709179 | Msa0366770:CDS | 35.0% |
| !! | ATTTTGGTGGAGATGACTTT+GGG | + | chr3_1:61709161-61709180 | Msa0366770:CDS | 35.0% |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3_1:61709208-61709227 | None:intergenic | 35.0% | |
| AGTGTAAAACCAACTAGTGA+AGG | - | chr3_1:61709209-61709228 | None:intergenic | 35.0% | |
| ! | GCAAAACCATAGATTTTGTG+AGG | - | chr3_1:61709337-61709356 | None:intergenic | 35.0% |
| ATGATCGATCGTTAAGAATG+AGG | - | chr3_1:61708477-61708496 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTGGTCACGTTAT+TGG | + | chr3_1:61708570-61708589 | Msa0366770:intron | 35.0% |
| CAAAATTAGTCCGACAAAGA+TGG | - | chr3_1:61708609-61708628 | None:intergenic | 35.0% | |
| ! | CATCTTTGTCGGACTAATTT+TGG | + | chr3_1:61708607-61708626 | Msa0366770:intron | 35.0% |
| ! | AGTTGATTCATAGGGTATCA+TGG | + | chr3_1:61708994-61709013 | Msa0366770:intron | 35.0% |
| ACAACATTGGAAAGAAGGTA+TGG | + | chr3_1:61709050-61709069 | Msa0366770:CDS | 35.0% | |
| !! | GGAGACAAAACATATTTTGG+TGG | + | chr3_1:61709148-61709167 | Msa0366770:CDS | 35.0% |
| !!! | TATTTTGGTGGAGATGACTT+TGG | + | chr3_1:61709160-61709179 | Msa0366770:CDS | 35.0% |
| !! | ATTTTGGTGGAGATGACTTT+GGG | + | chr3_1:61709161-61709180 | Msa0366770:CDS | 35.0% |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3_1:61709208-61709227 | None:intergenic | 35.0% | |
| AGTGTAAAACCAACTAGTGA+AGG | - | chr3_1:61709209-61709228 | None:intergenic | 35.0% | |
| ! | GCAAAACCATAGATTTTGTG+AGG | - | chr3_1:61709337-61709356 | None:intergenic | 35.0% |
| GATCGTTAAGAATGAGGTCT+AGG | - | chr3_1:61708471-61708490 | None:intergenic | 40.0% | |
| ! | GAAGTATCCACCATCTTTGT+CGG | + | chr3_1:61708596-61708615 | Msa0366770:intron | 40.0% |
| AATTAGTCCGACAAAGATGG+TGG | - | chr3_1:61708606-61708625 | None:intergenic | 40.0% | |
| !! | TTTGTCGGACTAATTTTGGC+CGG | + | chr3_1:61708611-61708630 | Msa0366770:intron | 40.0% |
| !! | CTAATTTTGGCCGGAGATTA+TGG | + | chr3_1:61708620-61708639 | Msa0366770:intron | 40.0% |
| !!! | TTATGGCTAGCCACTTTTAG+TGG | + | chr3_1:61708637-61708656 | Msa0366770:intron | 40.0% |
| !!! | TATGGCTAGCCACTTTTAGT+GGG | + | chr3_1:61708638-61708657 | Msa0366770:intron | 40.0% |
| AACTGGAAACCCACTAAAAG+TGG | - | chr3_1:61708650-61708669 | None:intergenic | 40.0% | |
| ATGTAGTTGAGAGTGGAAAC+TGG | - | chr3_1:61708667-61708686 | None:intergenic | 40.0% | |
| TATATCCATTCAAGCCCAAG+TGG | + | chr3_1:61708875-61708894 | Msa0366770:intron | 40.0% | |
| ! | ATTGGAAAGAAGGTATGGAC+AGG | + | chr3_1:61709055-61709074 | Msa0366770:CDS | 40.0% |
| ! | AAAGAAGGTATGGACAGGAA+AGG | + | chr3_1:61709060-61709079 | Msa0366770:CDS | 40.0% |
| ! | AAGAAGGTATGGACAGGAAA+GGG | + | chr3_1:61709061-61709080 | Msa0366770:CDS | 40.0% |
| AAGGGTGAAGAACAAGAAGA+AGG | + | chr3_1:61709079-61709098 | Msa0366770:CDS | 40.0% | |
| GAATGCTTGAAGACTCTAGA+AGG | + | chr3_1:61709118-61709137 | Msa0366770:CDS | 40.0% | |
| TGACTTTGGGTATGTTGATG+TGG | + | chr3_1:61709174-61709193 | Msa0366770:CDS | 40.0% | |
| CTCTTATACCCTTCACTAGT+TGG | + | chr3_1:61709197-61709216 | Msa0366770:CDS | 40.0% | |
| GAAAGAATGTCCTAAGCTTG+TGG | + | chr3_1:61709258-61709277 | Msa0366770:CDS | 40.0% | |
| ! | CTCCTTTTCCATACACCTTT+TGG | - | chr3_1:61709290-61709309 | None:intergenic | 40.0% |
| ! | CCATAGATTTTGTGAGGATG+AGG | - | chr3_1:61709331-61709350 | None:intergenic | 40.0% |
| CCTCATCCTCACAAAATCTA+TGG | + | chr3_1:61709328-61709347 | Msa0366770:CDS | 40.0% | |
| GATCGTTAAGAATGAGGTCT+AGG | - | chr3_1:61708471-61708490 | None:intergenic | 40.0% | |
| ! | GAAGTATCCACCATCTTTGT+CGG | + | chr3_1:61708596-61708615 | Msa0366770:intron | 40.0% |
| AATTAGTCCGACAAAGATGG+TGG | - | chr3_1:61708606-61708625 | None:intergenic | 40.0% | |
| !! | TTTGTCGGACTAATTTTGGC+CGG | + | chr3_1:61708611-61708630 | Msa0366770:intron | 40.0% |
| !! | CTAATTTTGGCCGGAGATTA+TGG | + | chr3_1:61708620-61708639 | Msa0366770:intron | 40.0% |
| !!! | TTATGGCTAGCCACTTTTAG+TGG | + | chr3_1:61708637-61708656 | Msa0366770:intron | 40.0% |
| !!! | TATGGCTAGCCACTTTTAGT+GGG | + | chr3_1:61708638-61708657 | Msa0366770:intron | 40.0% |
| AACTGGAAACCCACTAAAAG+TGG | - | chr3_1:61708650-61708669 | None:intergenic | 40.0% | |
| ATGTAGTTGAGAGTGGAAAC+TGG | - | chr3_1:61708667-61708686 | None:intergenic | 40.0% | |
| TATATCCATTCAAGCCCAAG+TGG | + | chr3_1:61708875-61708894 | Msa0366770:intron | 40.0% | |
| ! | ATTGGAAAGAAGGTATGGAC+AGG | + | chr3_1:61709055-61709074 | Msa0366770:CDS | 40.0% |
| ! | AAAGAAGGTATGGACAGGAA+AGG | + | chr3_1:61709060-61709079 | Msa0366770:CDS | 40.0% |
| ! | AAGAAGGTATGGACAGGAAA+GGG | + | chr3_1:61709061-61709080 | Msa0366770:CDS | 40.0% |
| AAGGGTGAAGAACAAGAAGA+AGG | + | chr3_1:61709079-61709098 | Msa0366770:CDS | 40.0% | |
| GAATGCTTGAAGACTCTAGA+AGG | + | chr3_1:61709118-61709137 | Msa0366770:CDS | 40.0% | |
| TGACTTTGGGTATGTTGATG+TGG | + | chr3_1:61709174-61709193 | Msa0366770:CDS | 40.0% | |
| CTCTTATACCCTTCACTAGT+TGG | + | chr3_1:61709197-61709216 | Msa0366770:CDS | 40.0% | |
| GAAAGAATGTCCTAAGCTTG+TGG | + | chr3_1:61709258-61709277 | Msa0366770:CDS | 40.0% | |
| ! | CTCCTTTTCCATACACCTTT+TGG | - | chr3_1:61709290-61709309 | None:intergenic | 40.0% |
| ! | CCATAGATTTTGTGAGGATG+AGG | - | chr3_1:61709331-61709350 | None:intergenic | 40.0% |
| CCTCATCCTCACAAAATCTA+TGG | + | chr3_1:61709328-61709347 | Msa0366770:CDS | 40.0% | |
| ! | AAGTGGCTAGCCATAATCTC+CGG | - | chr3_1:61708633-61708652 | None:intergenic | 45.0% |
| ! | AAGACTCTAGAAGGTGAGCT+TGG | + | chr3_1:61709127-61709146 | Msa0366770:CDS | 45.0% |
| AATGTCCTAAGCTTGTGGCT+TGG | + | chr3_1:61709263-61709282 | Msa0366770:CDS | 45.0% | |
| ATGTCCTAAGCTTGTGGCTT+GGG | + | chr3_1:61709264-61709283 | Msa0366770:CDS | 45.0% | |
| ! | GGCCAAAAGGTGTATGGAAA+AGG | + | chr3_1:61709285-61709304 | Msa0366770:CDS | 45.0% |
| GTGTATGGAAAAGGAGAGTG+TGG | + | chr3_1:61709294-61709313 | Msa0366770:CDS | 45.0% | |
| ! | AAGTGGCTAGCCATAATCTC+CGG | - | chr3_1:61708633-61708652 | None:intergenic | 45.0% |
| ! | AAGACTCTAGAAGGTGAGCT+TGG | + | chr3_1:61709127-61709146 | Msa0366770:CDS | 45.0% |
| AATGTCCTAAGCTTGTGGCT+TGG | + | chr3_1:61709263-61709282 | Msa0366770:CDS | 45.0% | |
| ATGTCCTAAGCTTGTGGCTT+GGG | + | chr3_1:61709264-61709283 | Msa0366770:CDS | 45.0% | |
| ! | GGCCAAAAGGTGTATGGAAA+AGG | + | chr3_1:61709285-61709304 | Msa0366770:CDS | 45.0% |
| GTGTATGGAAAAGGAGAGTG+TGG | + | chr3_1:61709294-61709313 | Msa0366770:CDS | 45.0% | |
| ! | GTTTGCCACTTGGGCTTGAA+TGG | - | chr3_1:61708883-61708902 | None:intergenic | 50.0% |
| ! | GTTTGCCACTTGGGCTTGAA+TGG | - | chr3_1:61708883-61708902 | None:intergenic | 50.0% |
| TTGGCCCAAGCCACAAGCTT+AGG | - | chr3_1:61709271-61709290 | None:intergenic | 55.0% | |
| ! | AGCTTGTGGCTTGGGCCAAA+AGG | + | chr3_1:61709272-61709291 | Msa0366770:CDS | 55.0% |
| ! | GGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_1:61709279-61709298 | Msa0366770:CDS | 55.0% |
| TTGGCCCAAGCCACAAGCTT+AGG | - | chr3_1:61709271-61709290 | None:intergenic | 55.0% | |
| ! | AGCTTGTGGCTTGGGCCAAA+AGG | + | chr3_1:61709272-61709291 | Msa0366770:CDS | 55.0% |
| ! | GGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_1:61709279-61709298 | Msa0366770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61708306 | 61709390 | 61708306 | ID=Msa0366770;Name=Msa0366770 |
| chr3_1 | mRNA | 61708306 | 61709390 | 61708306 | ID=Msa0366770-mRNA-1;Parent=Msa0366770;Name=Msa0366770-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.5|0|0.5|2|0|116 |
| chr3_1 | exon | 61708306 | 61708311 | 61708306 | ID=Msa0366770-mRNA-1:exon:12002;Parent=Msa0366770-mRNA-1 |
| chr3_1 | exon | 61709046 | 61709390 | 61709046 | ID=Msa0366770-mRNA-1:exon:12003;Parent=Msa0366770-mRNA-1 |
| chr3_1 | CDS | 61708306 | 61708311 | 61708306 | ID=Msa0366770-mRNA-1:cds;Parent=Msa0366770-mRNA-1 |
| chr3_1 | CDS | 61709046 | 61709390 | 61709046 | ID=Msa0366770-mRNA-1:cds;Parent=Msa0366770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
