AlfalfaGEDB | Msa1113100

M. sativa cultivar zhongmu-4 / Msa1113100

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030312 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01476.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1113100	XP_024626338.1	95.065	689	29	1	1	689	1	684	0.0	1360

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1113100	sp\|Q9S9M5\|WAKLA_ARATH	56.533	375	162	1	289	662	350	724	2.46e-143	438

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1113100	Q2HV73	95.065	689	29	1	1	689	1	684	0.0	1360

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004480	Msa1113100	0.834296	3.253688e-56	-8.615850e-47
Msa0043850	Msa1113100	0.825681	4.104853e-54	-8.615850e-47
Msa0052780	Msa1113100	0.841074	5.923574e-58	-8.615850e-47
Msa0077370	Msa1113100	0.839464	1.559673e-57	-8.615850e-47
Msa0082420	Msa1113100	0.824845	6.472954e-54	-8.615850e-47
Msa0086190	Msa1113100	0.831996	1.216190e-55	-8.615850e-47
Msa0087550	Msa1113100	0.805915	1.060060e-49	-8.615850e-47
Msa0090380	Msa1113100	0.808306	3.305001e-50	-8.615850e-47
Msa0097570	Msa1113100	0.844604	6.821945e-59	-8.615850e-47
Msa0129640	Msa1113100	0.844725	6.326328e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1113100	MtrunA17_Chr7g0248904	95.065	689	29	1	1	689	1	684	0.0	1360
Msa1113100	MtrunA17_Chr7g0248881	73.264	677	171	5	23	689	3	679	0.0	981
Msa1113100	MtrunA17_Chr1g0158211	47.608	418	210	5	259	672	43	455	1.12e-136	410
Msa1113100	MtrunA17_Chr1g0158231	48.463	423	209	6	262	680	23	440	3.07e-136	408
Msa1113100	MtrunA17_Chr1g0158171	47.418	426	213	7	259	680	32	450	5.02e-134	402
Msa1113100	MtrunA17_Chr3g0125431	49.640	417	197	5	256	663	309	721	1.43e-133	411
Msa1113100	MtrunA17_Chr1g0158201	47.356	416	214	3	259	672	305	717	6.31e-133	409
Msa1113100	MtrunA17_Chr1g0158251	47.775	427	213	6	257	679	308	728	5.00e-132	407
Msa1113100	MtrunA17_Chr3g0125491	56.193	331	143	2	315	644	4	333	7.03e-132	392
Msa1113100	MtrunA17_Chr1g0158261	48.333	420	208	6	264	679	305	719	8.53e-132	406

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1113100	AT1G16120.1	56.533	375	162	1	289	662	350	724	2.50e-144	438
Msa1113100	AT1G16130.1	56.825	359	152	2	294	649	342	700	7.79e-143	435
Msa1113100	AT1G16150.1	52.764	398	168	4	255	648	326	707	4.05e-139	426
Msa1113100	AT1G16160.1	56.812	345	145	2	314	654	377	721	3.66e-134	412
Msa1113100	AT1G69730.1	50.469	426	199	7	259	678	342	761	8.73e-134	413
Msa1113100	AT1G79670.2	58.092	346	142	2	299	641	313	658	4.14e-133	409
Msa1113100	AT1G21230.1	50.995	402	188	5	258	653	295	693	1.30e-132	408
Msa1113100	AT1G79670.1	58.092	346	142	2	299	641	350	695	1.42e-132	409
Msa1113100	AT1G19390.1	54.813	374	165	3	293	662	376	749	1.82e-129	402
Msa1113100	AT1G17910.1	53.005	366	164	4	298	655	382	747	5.96e-129	400

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Find 131 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTACCTCCTACTGCTG+TGG	0.648974	7_3:-59287876	None:intergenic
AAACATTGCAATTGGTGCTG+AGG	0.672595	7_3:+59286353	Msa1113100:CDS
AAAGTTTAACAATGTTCCTG+TGG	0.561349	7_3:-59287559	None:intergenic
AACAATGAAAGAGGTTTCAA+CGG	0.563078	7_3:+59288186	Msa1113100:CDS
AACATTCAATGATGAAGATG+AGG	0.549296	7_3:+59288006	Msa1113100:CDS
AACTGTTAAGTCTATAGGAG+AGG	0.624509	7_3:+59286467	Msa1113100:CDS
AAGAGAATCACACTTCTGTT+TGG	0.423893	7_3:-59286543	None:intergenic
AAGAGTGATGTATATAGTTT+CGG	0.431567	7_3:+59287944	Msa1113100:CDS
AAGGAGAGCGAGTATTCGTA+AGG	0.563200	7_3:+59287262	Msa1113100:CDS
AAGGCGACTTTCCCATGAAA+GGG	0.508564	7_3:-59287681	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAACATACATAAGAGA+AGG	-	chr7_3:59285927-59285946	None:intergenic	30.0%
TGTTGACAGTTGATTGAATA+AGG	-	chr7_3:59285946-59285965	None:intergenic	30.0%
GGATGATACATACTTTCAAT+TGG	+	chr7_3:59286263-59286282	Msa1113100:CDS	30.0%
TGATGAACAAAGCATATTAG+AGG	+	chr7_3:59286500-59286519	Msa1113100:CDS	30.0%
ACCAATATTAGTTCCTCTTA+GGG	+	chr7_3:59286575-59286594	Msa1113100:CDS	30.0%
CAAGTACAGTAAAAACTATC+AGG	-	chr7_3:59286621-59286640	None:intergenic	30.0%
TAGTTCTTTGTCACAACTAA+GGG	+	chr7_3:59286788-59286807	Msa1113100:intron	30.0%
AACTAGACATTGGATTTCTA+AGG	+	chr7_3:59286829-59286848	Msa1113100:intron	30.0%
TACTCTAGGTCATTAAAAGT+TGG	-	chr7_3:59287019-59287038	None:intergenic	30.0%
TTCGTAAGGAAAAGTTATTC+AGG	+	chr7_3:59287276-59287295	Msa1113100:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	59285832	59288372	59285832	ID=Msa1113100;Name=Msa1113100
chr7_3	mRNA	59285832	59288372	59285832	ID=Msa1113100-mRNA-1;Parent=Msa1113100;Name=Msa1113100-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|1\|1\|1\|2\|0\|689
chr7_3	exon	59285832	59286720	59285832	ID=Msa1113100-mRNA-1:exon:13083;Parent=Msa1113100-mRNA-1
chr7_3	exon	59287192	59288372	59287192	ID=Msa1113100-mRNA-1:exon:13084;Parent=Msa1113100-mRNA-1
chr7_3	CDS	59285832	59286720	59285832	ID=Msa1113100-mRNA-1:cds;Parent=Msa1113100-mRNA-1
chr7_3	CDS	59287192	59288372	59287192	ID=Msa1113100-mRNA-1:cds;Parent=Msa1113100-mRNA-1

Gene Sequence

>Msa1113100

ATGAATACCTTGGATCTTAAACTACACCTCAAAATTGAAGTGCAACTCATCAAACTCATGAAGTTTCTTTATCTTTACATTCTCTCCACAGTCCTTCTCTTATGTATGTTACCTTATTCAATCAACTGTCAACAAATATTACTTAACACCACTGTCACTGATTGCTCAGGCACCCCTACAGCACCAAAAGGATACCTATGCAATAGTCCTCAAAACTCATGCAGTTCATTCTTAACTTTCAGGTCAAAACCTTCTTATGACAACCCTACAAGTATTGCTTACCTTCTTGGCTCAGAAGCATCAACCATAGCCTCAATCAACAACATCTCAAGAAATGAAAAACTTCCTACCAATAAAACAATCATTGTCCCTATCTTGTGCTCATGTTCTGGAAATATCTACCAACATAACACTCCTTACACTATCAAAAAGGATGATACATACTTTCAATTGGTAAATGAAACTTACCAAAGTCTCACAACATGTCAGGCTTTGAAGGGTCAGAATTATTATGCTTCTGAAAACATTGCAATTGGTGCTGAGGTAACAGTTCCATTACTTTGTGCTTGTCCTACAACAAAACAGATGGCGAAAGGGATCACTTCCTTGCTGGTTTACACAGTCAACTATGGTGAAACTGTTAAGTCTATAGGAGAGGCTTATGGTGTTGATGAACAAAGCATATTAGAGGCAAATGAGTTGCAAGTGGCACCAAACAGAAGTGTGATTCTCTTTGCGTTGACACCAATATTAGTTCCTCTTAGGGGCAAGAGCTGCGAAGAGGATCCTGATAGTTTTTACTGTACTTGTTCTCAGGGAAGGCTTGCAGATGGAAGTTGTAATGAATCTCATGATCAAAAGTTTCCTGCCAAATTGGTTGTTGCATTAGGTGTTGGCATTGGTGCAGGCTTTCTGGTATTGTTTCTGGTGGGTTACAGGTTATATCAATATATAAAGAAAAGGAGAGCGAGTATTCGTAAGGAAAAGTTATTCAGGCAAAATGGTGGTTACTTGTTACAAGAGAAGTTATCATCTTATGGAAATGGAGAAATGGCAAAGCTTTTTACAGCAGAGGAGCTCCAAAGAGCAACAGATGACTACAACCAAAGTAGGTTTCTTGGTCAAGGCGGCTATGGCACAGTGTACAAAGGAATGCTACCAGATGGAACCATAGTCGCAGTTAAAAAGTCAAAACACCTTGACAGAAACCAAATAGAAACGTTTGTCAACGAAGTAGTCATCTTATCTCAGATCAACCACAGGAACATTGTTAAACTTTTAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATACATTCACAACGGAACTCTTTCCCAACATATCCATGGGAAAGACCGTGATTCATCCCTTTCATGGGAAAGTCGCCTTAGAATTGCATGTGAGGTTGCCGGAGCAGTGGCATATATGCATTTCTCAGCTTCTATTCCAATCTTCCATAGAGACATAAAACCAAGTAACATACTCCTAGACAATAACTATAGTGCCAAAGTGTCTGATTTTGGAACATCTAGATCAATTCCGTTAGATAAGACTCATTTAACCACAGCAGTAGGAGGTACTTTTGGGTACATGGATCCTGAATATTTTCAGTCAAGTCAATTTACAGATAAGAGTGATGTATATAGTTTCGGTGTGGTGCTTGTTGAGCTTATAACTGGTAGAAAGCCGATAACATTCAATGATGAAGATGAGGGTCAGAATATGACGGCACATTTCATTTCAGCGATGAAGGAAAACCAACTTTCTCAAATTTTAGATAACGCAGTGGTTAAGGAAGCAAGGCAAGATGACATTCTTACTATTGCGAATCTTGCAATGAGATGTTTGAGACTTAATGGTAAGAAAAGACCAACAATGAAAGAGGTTTCAACGGAATTAGAAGCACTAAGAAAGGTACAGAGTTCCTTACATATCAAAGATGATCAAGAATCACCAAGTGATGAACAATCACTTAGACATACAACTAATGATATATTTCATGAGTCTACGGTGGAAAGCTTTTCGCTATCCTCGCAAATGGAGTCCACATACTTCTAA

Protein sequence

>Msa1113100

MNTLDLKLHLKIEVQLIKLMKFLYLYILSTVLLLCMLPYSINCQQILLNTTVTDCSGTPTAPKGYLCNSPQNSCSSFLTFRSKPSYDNPTSIAYLLGSEASTIASINNISRNEKLPTNKTIIVPILCSCSGNIYQHNTPYTIKKDDTYFQLVNETYQSLTTCQALKGQNYYASENIAIGAEVTVPLLCACPTTKQMAKGITSLLVYTVNYGETVKSIGEAYGVDEQSILEANELQVAPNRSVILFALTPILVPLRGKSCEEDPDSFYCTCSQGRLADGSCNESHDQKFPAKLVVALGVGIGAGFLVLFLVGYRLYQYIKKRRASIRKEKLFRQNGGYLLQEKLSSYGNGEMAKLFTAEELQRATDDYNQSRFLGQGGYGTVYKGMLPDGTIVAVKKSKHLDRNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYIHNGTLSQHIHGKDRDSSLSWESRLRIACEVAGAVAYMHFSASIPIFHRDIKPSNILLDNNYSAKVSDFGTSRSIPLDKTHLTTAVGGTFGYMDPEYFQSSQFTDKSDVYSFGVVLVELITGRKPITFNDEDEGQNMTAHFISAMKENQLSQILDNAVVKEARQDDILTIANLAMRCLRLNGKKRPTMKEVSTELEALRKVQSSLHIKDDQESPSDEQSLRHTTNDIFHESTVESFSLSSQMESTYF*