AlfalfaGEDB | Msa0369590

M. sativa cultivar zhongmu-4 / Msa0369590

KEGG: K15227
GO: -
PFAM: PF02153.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369590	XP_003601003.1	97.388	268	7	0	1	268	1	268	0.0	545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369590	sp\|Q944B6\|TYRA1_ARATH	54.717	265	116	1	8	268	365	629	2.79e-96	298
Msa0369590	sp\|Q944B6\|TYRA1_ARATH	50.763	262	123	2	2	257	47	308	8.69e-86	271

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369590	G7J2E9	97.388	268	7	0	1	268	1	268	0.0	545

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0039250	Msa0369590	0.803884	2.816275e-49	-8.615850e-47
Msa0133720	Msa0369590	0.806112	9.634657e-50	-8.615850e-47
Msa0369590	Msa0498450	0.802996	4.304102e-49	-8.615850e-47
Msa0369590	Msa1172640	0.800704	1.271790e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369590	MtrunA17_Chr3g0114251	97.388	268	7	0	1	268	1	268	0.0	545
Msa0369590	MtrunA17_Chr5g0437781	76.136	264	62	1	3	265	2	265	1.30e-150	421
Msa0369590	MtrunA17_Chr4g0064761	53.462	260	117	2	2	257	377	636	5.13e-92	285
Msa0369590	MtrunA17_Chr4g0064761	50.385	260	125	1	4	259	69	328	9.74e-90	279
Msa0369590	MtrunA17_Chr5g0437791	59.740	77	27	2	86	162	30	102	5.50e-22	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369590	AT5G34930.3	54.717	265	116	1	8	268	345	609	1.83e-97	298
Msa0369590	AT5G34930.3	50.763	262	123	2	2	257	27	288	6.22e-87	271
Msa0369590	AT5G34930.1	54.717	265	116	1	8	268	365	629	2.84e-97	298
Msa0369590	AT5G34930.1	50.763	262	123	2	2	257	47	308	8.83e-87	271
Msa0369590	AT5G34930.2	54.717	265	116	1	8	268	387	651	5.67e-97	298
Msa0369590	AT5G34930.2	50.763	262	123	2	2	257	69	330	1.67e-86	271
Msa0369590	AT1G15710.1	50.903	277	122	2	5	267	56	332	1.06e-93	280

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Find 66 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGCATAGTTGGGTT+TGG	0.391343	3_1:-66933603	Msa0369590:CDS
AAATAAGTGCAAAATATGAG+AGG	0.631671	3_1:+66933682	None:intergenic
AAATATGAGAGGAATGGATG+TGG	0.655607	3_1:+66933693	None:intergenic
AAATGGGAATCCATTTCTTC+AGG	0.426562	3_1:-66933488	Msa0369590:intron
AACAAGTGTTTGAAAGCCCT+TGG	0.482288	3_1:+66932287	None:intergenic
AAGCAAAAGTAAGAATGTGA+AGG	0.608129	3_1:-66933853	Msa0369590:five_prime_UTR
AAGCTGATTGGCACAGATAG+CGG	0.575610	3_1:+66933820	None:intergenic
AATCTGAAAATTGGCATAGT+TGG	0.302197	3_1:-66933609	Msa0369590:CDS
AATGTTTAAGGTGTTGCCAG+AGG	0.615939	3_1:-66933101	Msa0369590:intron
AGAGATGCTCGTCCAAAGGA+TGG	0.559893	3_1:-66931893	Msa0369590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAAAAGTAAGAATGTGA+AGG	-	chr3_1:66931708-66931727	Msa0369590:three_prime_UTR	30.0%
AATCTGAAAATTGGCATAGT+TGG	-	chr3_1:66931952-66931971	Msa0369590:intron	30.0%
ATCTGAAAATTGGCATAGTT+GGG	-	chr3_1:66931953-66931972	Msa0369590:intron	30.0%
ATGTATATGATATGCAAGCT+TGG	+	chr3_1:66932112-66932131	None:intergenic	30.0%
GTTTGACAAAGTTCGAATAA+AGG	-	chr3_1:66932559-66932578	Msa0369590:intron	30.0%
ATTGTGAAATAGATCTAGCT+TGG	+	chr3_1:66933021-66933040	None:intergenic	30.0%
CAATTTATCACACACACAAT+AGG	-	chr3_1:66933112-66933131	Msa0369590:intron	30.0%
GAAAGATTTAGGAGGAATTA+GGG	+	chr3_1:66933343-66933362	None:intergenic	30.0%
AGAAAGATTTAGGAGGAATT+AGG	+	chr3_1:66933344-66933363	None:intergenic	30.0%
AGAAAAGAGAAAGATTTAGG+AGG	+	chr3_1:66933351-66933370	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	66931670	66933913	66931670	ID=Msa0369590;Name=Msa0369590
chr3_1	mRNA	66931670	66933913	66931670	ID=Msa0369590-mRNA-1;Parent=Msa0369590;Name=Msa0369590-mRNA-1;_AED=0.20;_eAED=0.20;_QI=264\|1\|1\|1\|1\|1\|7\|188\|268
chr3_1	exon	66931670	66931950	66931670	ID=Msa0369590-mRNA-1:exon:13687;Parent=Msa0369590-mRNA-1
chr3_1	exon	66932069	66932143	66932069	ID=Msa0369590-mRNA-1:exon:13686;Parent=Msa0369590-mRNA-1
chr3_1	exon	66932281	66932350	66932281	ID=Msa0369590-mRNA-1:exon:13685;Parent=Msa0369590-mRNA-1
chr3_1	exon	66932446	66932528	66932446	ID=Msa0369590-mRNA-1:exon:13684;Parent=Msa0369590-mRNA-1
chr3_1	exon	66932958	66933113	66932958	ID=Msa0369590-mRNA-1:exon:13683;Parent=Msa0369590-mRNA-1
chr3_1	exon	66933229	66933397	66933229	ID=Msa0369590-mRNA-1:exon:13682;Parent=Msa0369590-mRNA-1
chr3_1	exon	66933489	66933913	66933489	ID=Msa0369590-mRNA-1:exon:13681;Parent=Msa0369590-mRNA-1
chr3_1	five_prime_UTR	66933650	66933913	66933650	ID=Msa0369590-mRNA-1:five_prime_utr;Parent=Msa0369590-mRNA-1
chr3_1	CDS	66933489	66933649	66933489	ID=Msa0369590-mRNA-1:cds;Parent=Msa0369590-mRNA-1
chr3_1	CDS	66933229	66933397	66933229	ID=Msa0369590-mRNA-1:cds;Parent=Msa0369590-mRNA-1
chr3_1	CDS	66932958	66933113	66932958	ID=Msa0369590-mRNA-1:cds;Parent=Msa0369590-mRNA-1
chr3_1	CDS	66932446	66932528	66932446	ID=Msa0369590-mRNA-1:cds;Parent=Msa0369590-mRNA-1
chr3_1	CDS	66932281	66932350	66932281	ID=Msa0369590-mRNA-1:cds;Parent=Msa0369590-mRNA-1
chr3_1	CDS	66932069	66932143	66932069	ID=Msa0369590-mRNA-1:cds;Parent=Msa0369590-mRNA-1
chr3_1	CDS	66931858	66931950	66931858	ID=Msa0369590-mRNA-1:cds;Parent=Msa0369590-mRNA-1
chr3_1	three_prime_UTR	66931670	66931857	66931670	ID=Msa0369590-mRNA-1:three_prime_utr;Parent=Msa0369590-mRNA-1

Gene Sequence

>Msa0369590

ATGTCATCATCTTCCAAAAATCTGAAAATTGGCATAGTTGGGTTTGGCACCTTTGGCCAATTTTTGGCAAATACAATGATTAAACAAGGCCATACTCTAACTGCGACTAGTAGAACGGATTACTCTCAACTTTGTCACCAAATGGGAATCCATTTCTTCAGGGAAGTCACAGCATTCCTTGATGCTGACATGGATGTCATACTATTATGCACATCTATTTCATCGCTATCCGAGGTTGTCGGGTCGATGCCACTCGCTTGTCTGAAGCGACCAACGCTTTTTGTTGATGTTCTTTCAGTCAAAGAGCACCCAAAGAACCTTCTATTAAAAGTGTTGCCAGAGGAGTCAGACATACTCTGCACGCACCCAATGTTTGGACCAGTAAGTGGGAAAAACGGTTGGCAAAATCTGACTTTCATGTTTGACAAAGTTCGAATAAAGGATGAAGTTACATGCTCTAAATTTCTCCAAATTTTTGAAAGTGAGGGTTGCAAGATGGTAGAAATGTCATGTGAGGAACATGACAAAGCAGCTGCAAAGAGTCAATTTATCACACACACAATAGGAAGGACATTGGCAGAAATGGATATTAAATCCACTCCTATTGACACCAAGGGCTTTCAAACACTTGTTGAGTTGAAAAAACCTGTCATGGGATGTAGTTTTGATCTGTACAGTGGATTATTCGTGTACAACAGATTCGCCAGACAAGAGCTGGAAAACATTGAACATGCTCTGCACAAAGTCAAAGAGATGCTCGTCCAAAGGATGGATGAAGGACAGAACCCAGAAAGAACTGAGAGTTGA

Protein sequence

>Msa0369590

MSSSSKNLKIGIVGFGTFGQFLANTMIKQGHTLTATSRTDYSQLCHQMGIHFFREVTAFLDADMDVILLCTSISSLSEVVGSMPLACLKRPTLFVDVLSVKEHPKNLLLKVLPEESDILCTHPMFGPVSGKNGWQNLTFMFDKVRIKDEVTCSKFLQIFESEGCKMVEMSCEEHDKAAAKSQFITHTIGRTLAEMDIKSTPIDTKGFQTLVELKKPVMGCSFDLYSGLFVYNRFARQELENIEHALHKVKEMLVQRMDEGQNPERTES*