AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039250 MtrunA17_Chr1g0203361 97.658 854 19 1 1 854 1 853 0.0 1688
Msa0039250 MtrunA17_Chr8g0386571 37.662 770 396 12 1 698 1 758 3.17e-140 442
Msa0039250 MtrunA17_Chr8g0386571 35.417 192 93 4 691 853 845 1034 3.41e-17 86.7
Msa0039250 MtrunA17_Chr5g0397721 36.637 797 427 14 1 727 1 789 3.00e-138 437
Msa0039250 MtrunA17_Chr5g0397721 72.727 55 15 0 799 853 1007 1061 3.96e-15 80.1
Msa0039250 MtrunA17_Chr3g0115391 27.930 401 218 10 5 342 7 399 4.59e-37 151
Msa0039250 MtrunA17_Chr3g0115391 54.545 55 25 0 798 852 1906 1960 7.75e-11 66.2
Msa0039250 MtrunA17_Chr1g0179821 26.809 470 255 12 1 413 1 438 6.18e-25 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039250 AT5G52280.1 43.407 910 400 20 1 853 1 852 0.0 596
Msa0039250 AT5G41140.1 36.573 998 472 25 1 853 1 982 4.68e-157 485
Msa0039250 AT5G41140.2 36.474 987 481 23 1 853 1 975 4.96e-154 477
Msa0039250 AT1G63300.1 39.258 782 420 16 1 732 1 777 5.00e-139 439
Msa0039250 AT1G22060.2 26.131 685 404 16 5 616 7 662 8.26e-40 160
Msa0039250 AT1G22060.1 26.131 685 404 16 5 616 7 662 8.26e-40 160

Find 172 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCTCTTGATTGCATTTC+TGG 0.028652 1_1:+68806515 None:intergenic
TGATGCTTTGATTGAGAATT+TGG 0.128846 1_1:-68804814 Msa0039250:three_prime_UTR
CTCAAATTCTGAACTTCTTT+TGG 0.164026 1_1:-68807253 Msa0039250:CDS
TCTTATAAGCTAAACATTAT+TGG 0.177334 1_1:+68809558 None:intergenic
TTCAAGATGGGACTTGTTTA+TGG 0.179533 1_1:-68809099 Msa0039250:CDS
GCCCTTGAAATTTGCAAATT+CGG 0.204924 1_1:-68808805 Msa0039250:CDS
TTCAGCTAGATTAATAAATA+TGG 0.240991 1_1:+68809494 None:intergenic
TGAAAATCAAGTTAAGTCTT+TGG 0.245483 1_1:-68806815 Msa0039250:CDS
TTCAAAAGCAGTTTGGTTCT+TGG 0.250839 1_1:-68804611 Msa0039250:three_prime_UTR
AAAATAGAAACTACTAAAAT+TGG 0.254158 1_1:+68804689 None:intergenic
CCCTTGAAATTTGCAAATTC+GGG 0.262697 1_1:-68808804 Msa0039250:CDS
TATTCGTGTTCCTTTCCTTT+AGG 0.264361 1_1:+68805303 None:intergenic
TTGAATCTGTTAAACTTGTT+AGG 0.276431 1_1:-68809063 Msa0039250:CDS
CAGGGACTCTTCTGCTTGAA+TGG 0.294165 1_1:+68806708 None:intergenic
GATCAAAGCTGTATTCAAAT+TGG 0.298730 1_1:-68809439 Msa0039250:CDS
AATTCTCTATTTCACTATTC+TGG 0.302012 1_1:+68807091 None:intergenic
GAGTTCTGTCTGAAGCTATA+AGG 0.304087 1_1:+68807804 None:intergenic
ACAAAAGAATAAGGAAATAT+TGG 0.304705 1_1:-68807202 Msa0039250:CDS
AAGTCACACTCCTTATTTCT+TGG 0.311739 1_1:+68809705 None:intergenic
CTTGTTAGGGATTCAAAATC+AGG 0.313625 1_1:-68809049 Msa0039250:CDS
TCTCAATCAACCAAGAAATA+AGG 0.316778 1_1:-68809715 Msa0039250:five_prime_UTR
TTGTAGGGTTCTTCAAAATC+TGG 0.322934 1_1:-68808897 Msa0039250:intron
TATTGTGTCTCGTCTTTCTC+AGG 0.325981 1_1:+68806689 None:intergenic
AAAGGAAAGGAACACGAATA+TGG 0.334534 1_1:-68805300 Msa0039250:CDS
GAATGCATTGATGGTATCTT+TGG 0.340165 1_1:-68809170 Msa0039250:CDS
AAGGGCAGAGAAACAGTAAT+TGG 0.340819 1_1:+68808822 None:intergenic
AATGCTAGAACAAAAGAATA+AGG 0.342812 1_1:-68807211 Msa0039250:CDS
AGTTGATGTACAGGATAAAT+AGG 0.345911 1_1:+68805026 None:intergenic
CTGTACTGCCATAGCTCAAT+TGG 0.348542 1_1:+68808126 None:intergenic
TTCTTCAAAATCTGGCTACT+TGG 0.349811 1_1:-68808889 Msa0039250:CDS
TATGATGTTGTAGCCTCATA+TGG 0.360562 1_1:-68804909 Msa0039250:three_prime_UTR
TCAGCATCAGATGGAAGTTT+AGG 0.361910 1_1:-68807699 Msa0039250:CDS
TCAGTCCTGGGGTAGCTTCA+TGG 0.364313 1_1:-68807833 Msa0039250:CDS
TTTGTTCTAGCATTGCTTCA+AGG 0.366988 1_1:+68807220 None:intergenic
CATTCAATAATTCCTTTGTA+AGG 0.376479 1_1:+68805336 None:intergenic
CAGATGGAAGTTTAGGTGAT+TGG 0.379221 1_1:-68807692 Msa0039250:CDS
TCAAGATGGGACTTGTTTAT+GGG 0.381612 1_1:-68809098 Msa0039250:CDS
GCCTCAACTGTTCCTCTTGG+TGG 0.382303 1_1:+68807777 None:intergenic
TATCGCATCTGAGCAGCTTC+AGG 0.385097 1_1:-68806662 Msa0039250:CDS
CACAAAATCAAGTGCATAAG+AGG 0.388926 1_1:-68807746 Msa0039250:CDS
GCTTCAGTTAGATGCAATAA+AGG 0.391713 1_1:-68807340 Msa0039250:CDS
GAAGAGGCAGGCAGAATTAT+CGG 0.394976 1_1:-68807571 Msa0039250:CDS
GCGGAACCACAACAGGCTTA+TGG 0.395493 1_1:-68806548 Msa0039250:CDS
CAAGACAAATCAACGGTCTC+AGG 0.396783 1_1:-68807485 Msa0039250:CDS
GAAGAACTAGAACTCTTTGC+AGG 0.398652 1_1:-68805162 Msa0039250:exon
TGAATCTGTTAAACTTGTTA+GGG 0.399721 1_1:-68809062 Msa0039250:CDS
GGAAACTGAACTGAAAGAAA+TGG 0.401729 1_1:-68805279 Msa0039250:CDS
TTGTAACCCATGTATATGTT+TGG 0.404467 1_1:+68805125 None:intergenic
TATTGGATCTATCTTCCAAT+AGG 0.408356 1_1:-68807185 Msa0039250:CDS
TTTCTTCTAGTCTCTTCACT+TGG 0.412470 1_1:+68806893 None:intergenic
AAACATATATCTCAATTAGA+AGG 0.412778 1_1:-68806247 Msa0039250:CDS
TGTTACTTTCAAAAGCAGTT+TGG 0.414328 1_1:-68804618 Msa0039250:three_prime_UTR
GCCCGAATTTGCAAATTTCA+AGG 0.415467 1_1:+68808803 None:intergenic
GCATCAAATGGCATCAGTCC+TGG 0.418524 1_1:-68807846 Msa0039250:CDS
TGTGTTTCATTTCATTGTGC+TGG 0.418901 1_1:+68806308 None:intergenic
GCAGTCAGCGCAGCAAATTT+CGG 0.421568 1_1:+68804981 None:intergenic
GAAAGATTACAGGAGCCTTC+AGG 0.428828 1_1:-68807639 Msa0039250:CDS
TGCAGAAATGGGGAAGATAA+TGG 0.433442 1_1:-68808185 Msa0039250:intron
CTCATTGTCTCTTGAGGTCA+TGG 0.434335 1_1:+68806150 None:intergenic
ATTATTATTGAAGTTCTGTT+GGG 0.435565 1_1:+68807419 None:intergenic
TTACAGTTGCAACAATGAAA+TGG 0.436006 1_1:+68809005 None:intergenic
AGTTCTGTCTGAAGCTATAA+GGG 0.436569 1_1:+68807805 None:intergenic
ATGAATTGCGGAACCACAAC+AGG 0.437283 1_1:-68806555 Msa0039250:CDS
ATAAAACAGACTATGTAGTC+TGG 0.441515 1_1:-68804776 Msa0039250:three_prime_UTR
GTCAAATACAGGCTGGTCAA+TGG 0.441874 1_1:-68807724 Msa0039250:CDS
CAGTCCTGGGGTAGCTTCAT+GGG 0.444592 1_1:-68807832 Msa0039250:CDS
GTTGGTTTCCCAACATCATC+TGG 0.444751 1_1:+68809145 None:intergenic
TTGGCCTCAACTGTTCCTCT+TGG 0.447378 1_1:+68807774 None:intergenic
GACTACATGTGGCCCATATG+AGG 0.448512 1_1:+68804896 None:intergenic
TATTATTATTGAAGTTCTGT+TGG 0.451599 1_1:+68807418 None:intergenic
ATCGTCATTGGTCTCCATCA+AGG 0.466927 1_1:-68806842 Msa0039250:CDS
TTCTTCTAGTCTCTTCACTT+GGG 0.467384 1_1:+68806894 None:intergenic
GCTGTACGTAATCTCAAGAA+TGG 0.473934 1_1:-68805188 Msa0039250:CDS
AGAAGAAAAGATAGAGATGC+AGG 0.477881 1_1:-68806878 Msa0039250:CDS
AGAAGCAGAATTAAATGCTA+TGG 0.479810 1_1:-68806209 Msa0039250:CDS
TCAAATACAGGCTGGTCAAT+GGG 0.480928 1_1:-68807723 Msa0039250:CDS
CATCAAATGGCATCAGTCCT+GGG 0.483449 1_1:-68807845 Msa0039250:CDS
ATCAAAATCAGAAATGCATA+AGG 0.483727 1_1:-68806104 Msa0039250:intron
GAATGAAGTGGCGGTCCTAA+AGG 0.486341 1_1:-68805318 Msa0039250:CDS
ACAAAGGCACAGGGATGAAA+AGG 0.486938 1_1:-68806368 Msa0039250:CDS
ATTCTCAATCAAAGCATCAT+AGG 0.487620 1_1:+68804818 None:intergenic
TGATGCATCGGATCTACTCT+TGG 0.487712 1_1:+68807863 None:intergenic
TCTGAAATTTGCAGAGGTAG+AGG 0.487867 1_1:-68805234 Msa0039250:CDS
GTTACAAGCACTTCGGAAGC+AGG 0.487924 1_1:-68807541 Msa0039250:CDS
AGTTTAGGTGATTGGACAAA+CGG 0.490146 1_1:-68807684 Msa0039250:CDS
GTGAGATTGTTTCTCTGAAG+AGG 0.495168 1_1:-68807587 Msa0039250:CDS
GGAGAAAGAACTGAGTATAC+AGG 0.495561 1_1:-68806794 Msa0039250:CDS
AAATTAATTTGTGACAAAGT+CGG 0.499986 1_1:+68809629 None:intergenic
GAGAAAACTGCTGTTCAAGA+TGG 0.500999 1_1:-68809112 Msa0039250:CDS
TTTCATACCAAACATATACA+TGG 0.501948 1_1:-68805132 Msa0039250:three_prime_UTR
TCTTCAAAATCTGGCTACTT+GGG 0.505506 1_1:-68808888 Msa0039250:CDS
TAAATTTGAAGATGAACTCC+AGG 0.505676 1_1:-68806767 Msa0039250:CDS
AAGAGACAATGAGGCTGCTA+AGG 0.508811 1_1:-68806140 Msa0039250:CDS
AGCAGCCTCATTGTCTCTTG+AGG 0.509235 1_1:+68806144 None:intergenic
TTGAAGATGCACAAAGGCAC+AGG 0.510046 1_1:-68806378 Msa0039250:CDS
ATTGTGTCTCGTCTTTCTCA+GGG 0.510679 1_1:+68806690 None:intergenic
GCTGTGGAAATTTATAATGA+TGG 0.510768 1_1:-68808161 Msa0039250:CDS
CTTTGGTGCCAGATGATGTT+GGG 0.511310 1_1:-68809153 Msa0039250:CDS
GGTACATTGTCAAGGTAACC+AGG 0.511359 1_1:-68804934 Msa0039250:three_prime_UTR
ACACAGTTTGCAGAAAGAAC+AGG 0.512040 1_1:-68806290 Msa0039250:CDS
GTTGGTTAATGAGTTGAAGA+AGG 0.518971 1_1:+68809651 None:intergenic
TTTCTTCCATAAGCCTGTTG+TGG 0.519288 1_1:+68806542 None:intergenic
AGATCAACATGAATTGAAAG+TGG 0.519867 1_1:-68806482 Msa0039250:CDS
AGTAGATCCGATGCATCAAA+TGG 0.520711 1_1:-68807858 Msa0039250:CDS
CCCGAATTTGCAAATTTCAA+GGG 0.521489 1_1:+68808804 None:intergenic
CTGAAATTTGCAGAGGTAGA+GGG 0.524057 1_1:-68805233 Msa0039250:CDS
AGAAAGACAACAGCTTGTTA+TGG 0.526698 1_1:-68805210 Msa0039250:CDS
TAAATTTGGTTACACCATCC+TGG 0.527114 1_1:+68805077 None:intergenic
AAAGGAATTATTGAATGAAG+TGG 0.532662 1_1:-68805330 Msa0039250:CDS
AGAAATGCAATCAAGAGCTC+AGG 0.533105 1_1:-68806513 Msa0039250:CDS
AGTCTGATATTGATAATACT+AGG 0.533275 1_1:-68807362 Msa0039250:CDS
CTGAAAACATGTTCAAGTCA+TGG 0.540034 1_1:-68809476 Msa0039250:exon
ATTGGAATTTCAAGCAACTC+AGG 0.543027 1_1:-68809421 Msa0039250:intron
AGAAAACTGCTGTTCAAGAT+GGG 0.543774 1_1:-68809111 Msa0039250:CDS
GATTGTTTCTCTGAAGAGGC+AGG 0.546222 1_1:-68807583 Msa0039250:CDS
GGCTCCTGTAATCTTTCTCT+CGG 0.547618 1_1:+68807645 None:intergenic
TTACAGGAGCCTTCAGGCAA+TGG 0.549125 1_1:-68807633 Msa0039250:CDS
CTCAAGAATAACAGAGGACG+AGG 0.553689 1_1:-68806178 Msa0039250:CDS
ACTGATGCCATTTGATGCAT+CGG 0.558366 1_1:+68807851 None:intergenic
ATGATGTTGTAGCCTCATAT+GGG 0.558962 1_1:-68804908 Msa0039250:three_prime_UTR
GTGGCATTGCCATTGCCTGA+AGG 0.565313 1_1:+68807624 None:intergenic
GTGCATAAGAGGTCAAATAC+AGG 0.566002 1_1:-68807735 Msa0039250:CDS
TACCTTGACAATGTACCATA+CGG 0.568597 1_1:+68804940 None:intergenic
AACATATACATGGGTTACAA+AGG 0.569194 1_1:-68805122 Msa0039250:three_prime_UTR
GGAATGGATGCAGCAAGCAC+TGG 0.569706 1_1:-68805567 Msa0039250:CDS
TAATTTGTGACAAAGTCGGT+TGG 0.574688 1_1:+68809633 None:intergenic
AATTTGCTGCGCTGACTGCA+CGG 0.575216 1_1:-68804977 Msa0039250:three_prime_UTR
TCATCCCATGAAGCTACCCC+AGG 0.575983 1_1:+68807828 None:intergenic
TATCTTATAGAATAGCAACT+TGG 0.578135 1_1:-68807886 Msa0039250:intron
CATGTTACAAAATGAACACT+CGG 0.582030 1_1:-68806947 Msa0039250:CDS
TCTTTGGTGCCAGATGATGT+TGG 0.584848 1_1:-68809154 Msa0039250:CDS
GTCCGTATGGTACATTGTCA+AGG 0.587568 1_1:-68804942 Msa0039250:three_prime_UTR
TTGAAACACCAATTGAGCTA+TGG 0.589258 1_1:-68808134 Msa0039250:CDS
TATATCTCAATTAGAAGGAG+AGG 0.593443 1_1:-68806242 Msa0039250:CDS
ACAGGTAACTATTCAGAATG+TGG 0.594916 1_1:-68808321 Msa0039250:intron
CGCATCTGAGCAGCTTCAGG+AGG 0.596198 1_1:-68806659 Msa0039250:CDS
GATAAACATTTGACTACATG+TGG 0.600184 1_1:+68804885 None:intergenic
GTAACTATTCAGAATGTGGA+AGG 0.605000 1_1:-68808317 Msa0039250:CDS
CTACCTTATTTGCAGAAATG+GGG 0.605496 1_1:-68808195 Msa0039250:intron
AAGTGGCGGTCCTAAAGGAA+AGG 0.605693 1_1:-68805313 Msa0039250:CDS
TCGAAGAAGCTGATGAATTG+CGG 0.607639 1_1:-68806567 Msa0039250:CDS
AGGCTACAACATCATACCCC+TGG 0.610084 1_1:+68804916 None:intergenic
TCTTCTTAAGAATGAAAATG+TGG 0.611817 1_1:-68807010 Msa0039250:CDS
TTCATACCAAACATATACAT+GGG 0.612973 1_1:-68805131 Msa0039250:three_prime_UTR
GATTAGTCTGAAATTTGCAG+AGG 0.613349 1_1:-68805240 Msa0039250:CDS
TCAATGGGTTCAGCATCAGA+TGG 0.615920 1_1:-68807708 Msa0039250:CDS
GTACATTGTCAAGGTAACCA+GGG 0.625975 1_1:-68804933 Msa0039250:three_prime_UTR
AAGACAAATCAACGGTCTCA+GGG 0.626387 1_1:-68807484 Msa0039250:CDS
TGGGGAAGATAATGGTGCTG+TGG 0.626676 1_1:-68808177 Msa0039250:CDS
AAGCAACTGTCAACTTACCT+CGG 0.633419 1_1:-68804737 Msa0039250:three_prime_UTR
ATAAGAGGTCAAATACAGGC+TGG 0.635907 1_1:-68807731 Msa0039250:CDS
AACTAGAGTTACAAGCACTT+CGG 0.636170 1_1:-68807548 Msa0039250:CDS
GGTTAATGAGTTGAAGAAGG+CGG 0.638967 1_1:+68809654 None:intergenic
ACTGGTATTAGCAAGTCTGA+AGG 0.642094 1_1:-68805549 Msa0039250:CDS
TATCATGATTACTACCAGGA+TGG 0.644495 1_1:-68805091 Msa0039250:three_prime_UTR
TGAAGATGCACAAAGGCACA+GGG 0.646468 1_1:-68806377 Msa0039250:CDS
CAGTTTGCAGAAAGAACAGG+TGG 0.646980 1_1:-68806287 Msa0039250:CDS
TGATGCTGAACGCCTTACAA+AGG 0.649461 1_1:-68805348 Msa0039250:CDS
GTATTAGCAAGTCTGAAGGA+AGG 0.654276 1_1:-68805545 Msa0039250:intron
AAGATATCATGATTACTACC+AGG 0.654676 1_1:-68805095 Msa0039250:three_prime_UTR
GGAATTATTGAATGAAGTGG+CGG 0.655168 1_1:-68805327 Msa0039250:CDS
CATGACCTCAAGAGACAATG+AGG 0.664100 1_1:-68806149 Msa0039250:CDS
ATCAAATGGCATCAGTCCTG+GGG 0.667145 1_1:-68807844 Msa0039250:CDS
TGGAAGGATATACTGCCGAA+AGG 0.668488 1_1:-68808301 Msa0039250:intron
CAGAACTCAATGCCACCAAG+AGG 0.670351 1_1:-68807789 Msa0039250:CDS
AAGAAGCTCAAGAATAACAG+AGG 0.670995 1_1:-68806184 Msa0039250:CDS
GCCACCAAGAGGAACAGTTG+AGG 0.674754 1_1:-68807778 Msa0039250:CDS
AAGAACTTGAAGATGCACAA+AGG 0.694127 1_1:-68806384 Msa0039250:CDS
TACATTGTCAAGGTAACCAG+GGG 0.707139 1_1:-68804932 Msa0039250:three_prime_UTR
AATTTATCAAGACAAATCAA+CGG 0.718250 1_1:-68807492 Msa0039250:CDS
GAATTGTTATAAGCAACGCG+AGG 0.741429 1_1:-68807073 Msa0039250:CDS
GCTTATAAAAGAGCTCACAG+TGG 0.747992 1_1:-68807040 Msa0039250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTTAAATCTTTTTTTA+TGG - chr1_1:68805405-68805424 Msa0039250:intron 10.0%
!!! GTAAATATAATTTTATTCAA+TGG + chr1_1:68806408-68806427 None:intergenic 10.0%
!!! TACAATAACATTTTTTATTT+TGG - chr1_1:68808462-68808481 Msa0039250:intron 10.0%
!! ATCAACAAAATATATTATTA+TGG + chr1_1:68808725-68808744 None:intergenic 10.0%
!!! AAATAATAAAAGTTAGTTTT+TGG + chr1_1:68808940-68808959 None:intergenic 10.0%
!!! AAACTAACTTTTATTATTTT+TGG - chr1_1:68808941-68808960 Msa0039250:intron 10.0%
!!! TTTTTCATTATACAACAATT+AGG + chr1_1:68804997-68805016 None:intergenic 15.0%
!!! TGATTTTGTAAAATTGATTA+TGG - chr1_1:68805697-68805716 Msa0039250:intron 15.0%
!! AATGTAAAATGATTTATGTT+TGG - chr1_1:68805733-68805752 Msa0039250:intron 15.0%
!! TTAATATCTGATAATAAGTA+TGG + chr1_1:68808265-68808284 None:intergenic 15.0%
!! AAAATAGAAACTACTAAAAT+TGG + chr1_1:68809643-68809662 None:intergenic 15.0%
!!! AAATTAATTTGTGACAAAGT+CGG + chr1_1:68804703-68804722 None:intergenic 20.0%
!! TCTTATAAGCTAAACATTAT+TGG + chr1_1:68804774-68804793 None:intergenic 20.0%
!! TTCAGCTAGATTAATAAATA+TGG + chr1_1:68804838-68804857 None:intergenic 20.0%
!! AGTTTAACAGATTCAAAAAT+TGG + chr1_1:68805262-68805281 None:intergenic 20.0%
!!! ATTGTTTTGTACTTAAAAGA+AGG - chr1_1:68805369-68805388 Msa0039250:intron 20.0%
!!! TTTTTTTATGGATTCTTGTA+GGG - chr1_1:68805417-68805436 Msa0039250:intron 20.0%
!! AATTTATCAAGACAAATCAA+CGG - chr1_1:68806837-68806856 Msa0039250:CDS 20.0%
!! ATTATTATTGAAGTTCTGTT+GGG + chr1_1:68806913-68806932 None:intergenic 20.0%
!! TATTATTATTGAAGTTCTGT+TGG + chr1_1:68806914-68806933 None:intergenic 20.0%
!! ACAAAAGAATAAGGAAATAT+TGG - chr1_1:68807127-68807146 Msa0039250:CDS 20.0%
!! AAGTACAAAAGAAAAAACAA+TGG - chr1_1:68807889-68807908 Msa0039250:intron 20.0%
!! AAACATATATCTCAATTAGA+AGG - chr1_1:68808082-68808101 Msa0039250:intron 20.0%
!!! TTGATTTTTGTAACATGAAA+AGG - chr1_1:68808740-68808759 Msa0039250:intron 20.0%
!!! TGATTTTTGTAACATGAAAA+GGG - chr1_1:68808741-68808760 Msa0039250:intron 20.0%
!!! TTATGTTTTATGTTGTACAT+AGG - chr1_1:68809662-68809681 Msa0039250:five_prime_UTR 20.0%
!!! TATGTTTTATGTTGTACATA+GGG - chr1_1:68809663-68809682 Msa0039250:five_prime_UTR 20.0%
! TACACTATCAAATCTGAAAA+TGG - chr1_1:68804964-68804983 Msa0039250:three_prime_UTR 25.0%
! ACACTATCAAATCTGAAAAT+GGG - chr1_1:68804965-68804984 Msa0039250:three_prime_UTR 25.0%
! ATGAAAAAAACATGTTTCCT+AGG - chr1_1:68805009-68805028 Msa0039250:three_prime_UTR 25.0%
!!! GTATGAATCTGATTTTGATT+AGG - chr1_1:68805120-68805139 Msa0039250:three_prime_UTR 25.0%
!!! AATGCATTCTTTTTCATCTT+TGG + chr1_1:68805148-68805167 None:intergenic 25.0%
!! TTGAATCTGTTAAACTTGTT+AGG - chr1_1:68805266-68805285 Msa0039250:CDS 25.0%
!!! TGAATCTGTTAAACTTGTTA+GGG - chr1_1:68805267-68805286 Msa0039250:CDS 25.0%
! TAAAAGAAGGATATGTTGAT+TGG - chr1_1:68805382-68805401 Msa0039250:intron 25.0%
!!! CTTTTTTTATGGATTCTTGT+AGG - chr1_1:68805416-68805435 Msa0039250:intron 25.0%
!! AATTTTATCTCCTTCAAAAG+TGG - chr1_1:68805841-68805860 Msa0039250:intron 25.0%
! GTTAAATTAACTGTAGGTTA+TGG + chr1_1:68806064-68806083 None:intergenic 25.0%
! CAAAGGAAAAATTATTGCAA+TGG + chr1_1:68806086-68806105 None:intergenic 25.0%
! TCAAATGAATAAATCCAAAC+AGG + chr1_1:68806300-68806319 None:intergenic 25.0%
! TATCTTATAGAATAGCAACT+TGG - chr1_1:68806443-68806462 Msa0039250:CDS 25.0%
!!! AATCTCACTTTTGAGATTTT+CGG + chr1_1:68806730-68806749 None:intergenic 25.0%
!! AGTCTGATATTGATAATACT+AGG - chr1_1:68806967-68806986 Msa0039250:CDS 25.0%
! GTTTATGAAAAAGAAATGAG+TGG - chr1_1:68807020-68807039 Msa0039250:CDS 25.0%
! AATGCTAGAACAAAAGAATA+AGG - chr1_1:68807118-68807137 Msa0039250:CDS 25.0%
!!! AATCTTTTGAGATTTCCTAT+TGG + chr1_1:68807162-68807181 None:intergenic 25.0%
!! ACACAGAATTAAATGTTTTG+CGG - chr1_1:68807201-68807220 Msa0039250:CDS 25.0%
! AATTCTCTATTTCACTATTC+TGG + chr1_1:68807241-68807260 None:intergenic 25.0%
! TCTTCTTAAGAATGAAAATG+TGG - chr1_1:68807319-68807338 Msa0039250:CDS 25.0%
! TGAAAATCAAGTTAAGTCTT+TGG - chr1_1:68807514-68807533 Msa0039250:CDS 25.0%
! ATCAAAATCAGAAATGCATA+AGG - chr1_1:68808225-68808244 Msa0039250:intron 25.0%
! AGTTAGTACTCACAATAAAA+AGG - chr1_1:68808365-68808384 Msa0039250:intron 25.0%
! TAGTAATAACCTTAGAATCT+AGG - chr1_1:68808398-68808417 Msa0039250:intron 25.0%
! AGTAATAACCTTAGAATCTA+GGG - chr1_1:68808399-68808418 Msa0039250:intron 25.0%
!!! GAAAAGTGTACATATCATTT+TGG + chr1_1:68808435-68808454 None:intergenic 25.0%
! TGTGGTGATAATATATAACA+AGG - chr1_1:68808591-68808610 Msa0039250:intron 25.0%
!!! CAAATGTTTTGTTATATGGA+TGG + chr1_1:68808877-68808896 None:intergenic 25.0%
! CATCCATATAACAAAACATT+TGG - chr1_1:68808875-68808894 Msa0039250:CDS 25.0%
! CATTCAATAATTCCTTTGTA+AGG + chr1_1:68808996-68809015 None:intergenic 25.0%
! AAAGGAATTATTGAATGAAG+TGG - chr1_1:68808999-68809018 Msa0039250:intron 25.0%
! TTTCATACCAAACATATACA+TGG - chr1_1:68809197-68809216 Msa0039250:intron 25.0%
! TTCATACCAAACATATACAT+GGG - chr1_1:68809198-68809217 Msa0039250:intron 25.0%
!!! CAAAAAGTACTGGTTAAATT+TGG + chr1_1:68809269-68809288 None:intergenic 25.0%
!! AAAAATGTTAGTTGATGTAC+AGG + chr1_1:68809315-68809334 None:intergenic 25.0%
!! TATCATCTGTTTGACATTTT+TGG - chr1_1:68809463-68809482 Msa0039250:CDS 25.0%
! CAAAAAAAATTAGTATACCG+AGG + chr1_1:68809612-68809631 None:intergenic 25.0%
!!! CTCGGTATACTAATTTTTTT+TGG - chr1_1:68809610-68809629 Msa0039250:five_prime_UTR 25.0%
TCTCAATCAACCAAGAAATA+AGG - chr1_1:68804614-68804633 Msa0039250:three_prime_UTR 30.0%
GATCAAAGCTGTATTCAAAT+TGG - chr1_1:68804890-68804909 Msa0039250:three_prime_UTR 30.0%
CACTATCAAATCTGAAAATG+GGG - chr1_1:68804966-68804985 Msa0039250:three_prime_UTR 30.0%
GTGTAAATTTCAAACATCCT+AGG + chr1_1:68805029-68805048 None:intergenic 30.0%
GATGAAAAAGAATGCATTGA+TGG - chr1_1:68805150-68805169 Msa0039250:three_prime_UTR 30.0%
TTACAGTTGCAACAATGAAA+TGG + chr1_1:68805327-68805346 None:intergenic 30.0%
AAGAAAGTAAGAGAGATAGA+GGG + chr1_1:68805571-68805590 None:intergenic 30.0%
CTTAAGTAGTGCTAAAGATT+AGG + chr1_1:68805645-68805664 None:intergenic 30.0%
! GGAGATAAAATTGATTCTAG+AGG + chr1_1:68805833-68805852 None:intergenic 30.0%
ATACACTAAGAATCAGTGTT+TGG - chr1_1:68805872-68805891 Msa0039250:intron 30.0%
CAATTCTTATGTGAGAAGTT+AGG + chr1_1:68805983-68806002 None:intergenic 30.0%
GCAATGGTTAAATTAACTGT+AGG + chr1_1:68806070-68806089 None:intergenic 30.0%
!!! GTAGAGTTTTTAGTGCATTT+AGG + chr1_1:68806118-68806137 None:intergenic 30.0%
! TCTACCTTATTTGCAGAAAT+GGG - chr1_1:68806133-68806152 Msa0039250:CDS 30.0%
GCTGTGGAAATTTATAATGA+TGG - chr1_1:68806168-68806187 Msa0039250:CDS 30.0%
GTTACAATCTTGATGAAGTA+AGG - chr1_1:68806232-68806251 Msa0039250:CDS 30.0%
CTAAACAGAAACTTCTAACA+AGG - chr1_1:68806362-68806381 Msa0039250:CDS 30.0%
! CTCAAATTCTGAACTTCTTT+TGG - chr1_1:68807076-68807095 Msa0039250:CDS 30.0%
TATTGGATCTATCTTCCAAT+AGG - chr1_1:68807144-68807163 Msa0039250:CDS 30.0%
CATGTTACAAAATGAACACT+CGG - chr1_1:68807382-68807401 Msa0039250:CDS 30.0%
! AGATGAATTTTCATCGTCAT+TGG - chr1_1:68807475-68807494 Msa0039250:CDS 30.0%
!!! TTGATTTTCAAGTTCCTTGA+TGG + chr1_1:68807504-68807523 None:intergenic 30.0%
TAAATTTGAAGATGAACTCC+AGG - chr1_1:68807562-68807581 Msa0039250:CDS 30.0%
!!! TTTTTTCATTTTGCATAGCC+TGG + chr1_1:68807583-68807602 None:intergenic 30.0%
AGATCAACATGAATTGAAAG+TGG - chr1_1:68807847-68807866 Msa0039250:CDS 30.0%
TATATCTCAATTAGAAGGAG+AGG - chr1_1:68808087-68808106 Msa0039250:intron 30.0%
AGAAGCAGAATTAAATGCTA+TGG - chr1_1:68808120-68808139 Msa0039250:CDS 30.0%
AAATTCAACTGTAATGAGTG+AGG - chr1_1:68808563-68808582 Msa0039250:intron 30.0%
AATTCAACTGTAATGAGTGA+GGG - chr1_1:68808564-68808583 Msa0039250:intron 30.0%
TTTGTAACATGAAAAGGGAA+TGG - chr1_1:68808746-68808765 Msa0039250:intron 30.0%
TTGTTATATGGATGGTAAGA+GGG + chr1_1:68808869-68808888 None:intergenic 30.0%
! TTTGTTATATGGATGGTAAG+AGG + chr1_1:68808870-68808889 None:intergenic 30.0%
!! GCACCAAATGTTTTGTTATA+TGG + chr1_1:68808881-68808900 None:intergenic 30.0%
TTGTAACCCATGTATATGTT+TGG + chr1_1:68809207-68809226 None:intergenic 30.0%
! AACATATACATGGGTTACAA+AGG - chr1_1:68809207-68809226 Msa0039250:intron 30.0%
AAGATATCATGATTACTACC+AGG - chr1_1:68809234-68809253 Msa0039250:intron 30.0%
! AGTTGATGTACAGGATAAAT+AGG + chr1_1:68809306-68809325 None:intergenic 30.0%
GATAAACATTTGACTACATG+TGG + chr1_1:68809447-68809466 None:intergenic 30.0%
! ATTCTCAATCAAAGCATCAT+AGG + chr1_1:68809514-68809533 None:intergenic 30.0%
TGATGCTTTGATTGAGAATT+TGG - chr1_1:68809515-68809534 Msa0039250:five_prime_UTR 30.0%
ATAAAACAGACTATGTAGTC+TGG - chr1_1:68809553-68809572 Msa0039250:five_prime_UTR 30.0%
!! TGTTACTTTCAAAAGCAGTT+TGG - chr1_1:68809711-68809730 Msa0039250:five_prime_UTR 30.0%
! AAGTCACACTCCTTATTTCT+TGG + chr1_1:68804627-68804646 None:intergenic 35.0%
! GTTGGTTAATGAGTTGAAGA+AGG + chr1_1:68804681-68804700 None:intergenic 35.0%
! TAATTTGTGACAAAGTCGGT+TGG + chr1_1:68804699-68804718 None:intergenic 35.0%
CTGAAAACATGTTCAAGTCA+TGG - chr1_1:68804853-68804872 Msa0039250:three_prime_UTR 35.0%
ATTGGAATTTCAAGCAACTC+AGG - chr1_1:68804908-68804927 Msa0039250:three_prime_UTR 35.0%
! GAATGCATTGATGGTATCTT+TGG - chr1_1:68805159-68805178 Msa0039250:exon 35.0%
!! GTTTTCTCTAGTTTCACTGT+TGG + chr1_1:68805205-68805224 None:intergenic 35.0%
AGAAAACTGCTGTTCAAGAT+GGG - chr1_1:68805218-68805237 Msa0039250:CDS 35.0%
! TTCAAGATGGGACTTGTTTA+TGG - chr1_1:68805230-68805249 Msa0039250:CDS 35.0%
! TCAAGATGGGACTTGTTTAT+GGG - chr1_1:68805231-68805250 Msa0039250:CDS 35.0%
CTTGTTAGGGATTCAAAATC+AGG - chr1_1:68805280-68805299 Msa0039250:CDS 35.0%
TTGTAGGGTTCTTCAAAATC+TGG - chr1_1:68805432-68805451 Msa0039250:intron 35.0%
TTCTTCAAAATCTGGCTACT+TGG - chr1_1:68805440-68805459 Msa0039250:intron 35.0%
TCTTCAAAATCTGGCTACTT+GGG - chr1_1:68805441-68805460 Msa0039250:intron 35.0%
GCCCTTGAAATTTGCAAATT+CGG - chr1_1:68805524-68805543 Msa0039250:intron 35.0%
CCCGAATTTGCAAATTTCAA+GGG + chr1_1:68805528-68805547 None:intergenic 35.0%
CCCTTGAAATTTGCAAATTC+GGG - chr1_1:68805525-68805544 Msa0039250:intron 35.0%
CAAGAAAGTAAGAGAGATAG+AGG + chr1_1:68805572-68805591 None:intergenic 35.0%
GATTAGGAGAGGAATAATGT+GGG + chr1_1:68805629-68805648 None:intergenic 35.0%
AGATTAGGAGAGGAATAATG+TGG + chr1_1:68805630-68805649 None:intergenic 35.0%
!! ATGTGAAGTTCCACTTTTGA+AGG + chr1_1:68805854-68805873 None:intergenic 35.0%
AAGAATCAGTGTTTGGACAT+TGG - chr1_1:68805879-68805898 Msa0039250:intron 35.0%
CACATAAGAATTGTCGAAAC+AGG - chr1_1:68805990-68806009 Msa0039250:intron 35.0%
ACAGGTAACTATTCAGAATG+TGG - chr1_1:68806008-68806027 Msa0039250:intron 35.0%
GTAACTATTCAGAATGTGGA+AGG - chr1_1:68806012-68806031 Msa0039250:intron 35.0%
TATGGTTCATCTTCACCTTT+CGG + chr1_1:68806046-68806065 None:intergenic 35.0%
CATTTAGGAGTGAAAGTCAA+AGG + chr1_1:68806103-68806122 None:intergenic 35.0%
! CTCTACCTTATTTGCAGAAA+TGG - chr1_1:68806132-68806151 Msa0039250:CDS 35.0%
! CTACCTTATTTGCAGAAATG+GGG - chr1_1:68806134-68806153 Msa0039250:CDS 35.0%
TTGAAACACCAATTGAGCTA+TGG - chr1_1:68806195-68806214 Msa0039250:CDS 35.0%
AATTCTATTAAGCGCCTGTT+TGG - chr1_1:68806283-68806302 Msa0039250:CDS 35.0%
! AGTTCTGTCTGAAGCTATAA+GGG + chr1_1:68806527-68806546 None:intergenic 35.0%
! CACTTGATTTTGTGTTGCAT+TGG + chr1_1:68806577-68806596 None:intergenic 35.0%
CACAAAATCAAGTGCATAAG+AGG - chr1_1:68806583-68806602 Msa0039250:CDS 35.0%
AGTTTAGGTGATTGGACAAA+CGG - chr1_1:68806645-68806664 Msa0039250:CDS 35.0%
! TTTTCCGAGAGAAAGATTAC+AGG - chr1_1:68806680-68806699 Msa0039250:CDS 35.0%
AACTAGAGTTACAAGCACTT+CGG - chr1_1:68806781-68806800 Msa0039250:CDS 35.0%
AGGTAGAAAAAGAAAGCAGT+CGG - chr1_1:68806808-68806827 Msa0039250:CDS 35.0%
! ATCAGACTTCAAGCTTTTAG+AGG + chr1_1:68806955-68806974 None:intergenic 35.0%
GCTTCAGTTAGATGCAATAA+AGG - chr1_1:68806989-68807008 Msa0039250:CDS 35.0%
TTTGTTCTAGCATTGCTTCA+AGG + chr1_1:68807112-68807131 None:intergenic 35.0%
TTCTTCTAGTCTCTTCACTT+GGG + chr1_1:68807438-68807457 None:intergenic 35.0%
TTTCTTCTAGTCTCTTCACT+TGG + chr1_1:68807439-68807458 None:intergenic 35.0%
AGAAGAAAAGATAGAGATGC+AGG - chr1_1:68807451-68807470 Msa0039250:CDS 35.0%
GCAAAATGAAAAAACTGAGC+AGG - chr1_1:68807589-68807608 Msa0039250:CDS 35.0%
AAAAAACTGAGCAGGAAGAA+CGG - chr1_1:68807597-68807616 Msa0039250:CDS 35.0%
AAGAACTTGAAGATGCACAA+AGG - chr1_1:68807945-68807964 Msa0039250:intron 35.0%
TGTGTTTCATTTCATTGTGC+TGG + chr1_1:68808024-68808043 None:intergenic 35.0%
AAGAAGCTCAAGAATAACAG+AGG - chr1_1:68808145-68808164 Msa0039250:CDS 35.0%
AATGCATAAGGTAATTGCTC+AGG - chr1_1:68808237-68808256 Msa0039250:intron 35.0%
ACTTATTGACGTCGCATATT+AGG - chr1_1:68808291-68808310 Msa0039250:intron 35.0%
GCATATTAGGACAGGTTAAA+TGG - chr1_1:68808304-68808323 Msa0039250:CDS 35.0%
!! AACAGTTTTGTAGTGAGTGA+GGG - chr1_1:68808504-68808523 Msa0039250:intron 35.0%
GATTGTGTTAAAGGGAACAA+GGG + chr1_1:68808841-68808860 None:intergenic 35.0%
TGATTGTGTTAAAGGGAACA+AGG + chr1_1:68808842-68808861 None:intergenic 35.0%
GGGTTCATGATTGTGTTAAA+GGG + chr1_1:68808849-68808868 None:intergenic 35.0%
AGGGTTCATGATTGTGTTAA+AGG + chr1_1:68808850-68808869 None:intergenic 35.0%
ATAACACAAATACGACGTTG+TGG + chr1_1:68808903-68808922 None:intergenic 35.0%
GGAATTATTGAATGAAGTGG+CGG - chr1_1:68809002-68809021 Msa0039250:intron 35.0%
TATTCGTGTTCCTTTCCTTT+AGG + chr1_1:68809029-68809048 None:intergenic 35.0%
AAAGGAAAGGAACACGAATA+TGG - chr1_1:68809029-68809048 Msa0039250:CDS 35.0%
GGAAACTGAACTGAAAGAAA+TGG - chr1_1:68809050-68809069 Msa0039250:CDS 35.0%
!! AGAAAGACAACAGCTTGTTA+TGG - chr1_1:68809119-68809138 Msa0039250:CDS 35.0%
TATCATGATTACTACCAGGA+TGG - chr1_1:68809238-68809257 Msa0039250:intron 35.0%
TAAATTTGGTTACACCATCC+TGG + chr1_1:68809255-68809274 None:intergenic 35.0%
! AGCAGAAATGCAAAAAGTAC+TGG + chr1_1:68809279-68809298 None:intergenic 35.0%
TACCTTGACAATGTACCATA+CGG + chr1_1:68809392-68809411 None:intergenic 35.0%
TATGATGTTGTAGCCTCATA+TGG - chr1_1:68809420-68809439 Msa0039250:intron 35.0%
ATGATGTTGTAGCCTCATAT+GGG - chr1_1:68809421-68809440 Msa0039250:intron 35.0%
!!! TTGTACATAGGGCTAGTTTT+TGG - chr1_1:68809674-68809693 Msa0039250:five_prime_UTR 35.0%
!! TTCAAAAGCAGTTTGGTTCT+TGG - chr1_1:68809718-68809737 Msa0039250:five_prime_UTR 35.0%
! GGTTAATGAGTTGAAGAAGG+CGG + chr1_1:68804678-68804697 None:intergenic 40.0%
GAGAAAACTGCTGTTCAAGA+TGG - chr1_1:68805217-68805236 Msa0039250:CDS 40.0%
AAGGGCAGAGAAACAGTAAT+TGG + chr1_1:68805510-68805529 None:intergenic 40.0%
GCCCGAATTTGCAAATTTCA+AGG + chr1_1:68805529-68805548 None:intergenic 40.0%
GTAGTGCTAAAGATTAGGAG+AGG + chr1_1:68805640-68805659 None:intergenic 40.0%
AATCAGTGTTTGGACATTGG+TGG - chr1_1:68805882-68805901 Msa0039250:intron 40.0%
ATCAGTGTTTGGACATTGGT+GGG - chr1_1:68805883-68805902 Msa0039250:intron 40.0%
CTTCCCCATTTCTGCAAATA+AGG + chr1_1:68806140-68806159 None:intergenic 40.0%
TGCAGAAATGGGGAAGATAA+TGG - chr1_1:68806144-68806163 Msa0039250:CDS 40.0%
AGTAGATCCGATGCATCAAA+TGG - chr1_1:68806471-68806490 Msa0039250:CDS 40.0%
! ACTGATGCCATTTGATGCAT+CGG + chr1_1:68806481-68806500 None:intergenic 40.0%
! GAGTTCTGTCTGAAGCTATA+AGG + chr1_1:68806528-68806547 None:intergenic 40.0%
GTGCATAAGAGGTCAAATAC+AGG - chr1_1:68806594-68806613 Msa0039250:CDS 40.0%
ATAAGAGGTCAAATACAGGC+TGG - chr1_1:68806598-68806617 Msa0039250:CDS 40.0%
! TCAAATACAGGCTGGTCAAT+GGG - chr1_1:68806606-68806625 Msa0039250:CDS 40.0%
TCAGCATCAGATGGAAGTTT+AGG - chr1_1:68806630-68806649 Msa0039250:CDS 40.0%
CAGATGGAAGTTTAGGTGAT+TGG - chr1_1:68806637-68806656 Msa0039250:CDS 40.0%
!!! CTCACTTTTGAGATTTTCGG+TGG + chr1_1:68806727-68806746 None:intergenic 40.0%
! GTGAGATTGTTTCTCTGAAG+AGG - chr1_1:68806742-68806761 Msa0039250:CDS 40.0%
GGTAGAAAAAGAAAGCAGTC+GGG - chr1_1:68806809-68806828 Msa0039250:CDS 40.0%
GTAGAAAAAGAAAGCAGTCG+GGG - chr1_1:68806810-68806829 Msa0039250:CDS 40.0%
AAGACAAATCAACGGTCTCA+GGG - chr1_1:68806845-68806864 Msa0039250:CDS 40.0%
!! CTTCAAGCTTTTAGAGGTCT+TGG + chr1_1:68806949-68806968 None:intergenic 40.0%
GAATTGTTATAAGCAACGCG+AGG - chr1_1:68807256-68807275 Msa0039250:CDS 40.0%
GCTTATAAAAGAGCTCACAG+TGG - chr1_1:68807289-68807308 Msa0039250:CDS 40.0%
GGAGAAAGAACTGAGTATAC+AGG - chr1_1:68807535-68807554 Msa0039250:CDS 40.0%
AAAAACTGAGCAGGAAGAAC+GGG - chr1_1:68807598-68807617 Msa0039250:CDS 40.0%
ATTGTGTCTCGTCTTTCTCA+GGG + chr1_1:68807642-68807661 None:intergenic 40.0%
TATTGTGTCTCGTCTTTCTC+AGG + chr1_1:68807643-68807662 None:intergenic 40.0%
TCGAAGAAGCTGATGAATTG+CGG - chr1_1:68807762-68807781 Msa0039250:CDS 40.0%
TTTCTTCCATAAGCCTGTTG+TGG + chr1_1:68807790-68807809 None:intergenic 40.0%
TGAGCTCTTGATTGCATTTC+TGG + chr1_1:68807817-68807836 None:intergenic 40.0%
AGAAATGCAATCAAGAGCTC+AGG - chr1_1:68807816-68807835 Msa0039250:CDS 40.0%
ACACAGTTTGCAGAAAGAAC+AGG - chr1_1:68808039-68808058 Msa0039250:intron 40.0%
ACTGAACTCCCTAGATTCTA+AGG + chr1_1:68808410-68808429 None:intergenic 40.0%
!! GAACAGTTTTGTAGTGAGTG+AGG - chr1_1:68808503-68808522 Msa0039250:intron 40.0%
GGGTTAACGTTAGAATCTCA+TGG - chr1_1:68808524-68808543 Msa0039250:intron 40.0%
GTAATGAGTGAGGGTTAATG+TGG - chr1_1:68808573-68808592 Msa0039250:intron 40.0%
ACTGGTATTAGCAAGTCTGA+AGG - chr1_1:68808780-68808799 Msa0039250:intron 40.0%
GTATTAGCAAGTCTGAAGGA+AGG - chr1_1:68808784-68808803 Msa0039250:intron 40.0%
TCAGCATCACTGTCAGAATT+AGG + chr1_1:68808970-68808989 None:intergenic 40.0%
GCTGTACGTAATCTCAAGAA+TGG - chr1_1:68809141-68809160 Msa0039250:CDS 40.0%
GAAGAACTAGAACTCTTTGC+AGG - chr1_1:68809167-68809186 Msa0039250:CDS 40.0%
TACCATACGGACCGAAAAAT+TGG + chr1_1:68809379-68809398 None:intergenic 40.0%
GTACATTGTCAAGGTAACCA+GGG - chr1_1:68809396-68809415 Msa0039250:intron 40.0%
TACATTGTCAAGGTAACCAG+GGG - chr1_1:68809397-68809416 Msa0039250:intron 40.0%
AAGCAACTGTCAACTTACCT+CGG - chr1_1:68809592-68809611 Msa0039250:five_prime_UTR 40.0%
!! TGCAGTGTTGCGTTGTTTTG+TGG + chr1_1:68804811-68804830 None:intergenic 45.0%
!! TCTTTGGTGCCAGATGATGT+TGG - chr1_1:68805175-68805194 Msa0039250:CDS 45.0%
!! CTTTGGTGCCAGATGATGTT+GGG - chr1_1:68805176-68805195 Msa0039250:CDS 45.0%
! GTTGGTTTCCCAACATCATC+TGG + chr1_1:68805187-68805206 None:intergenic 45.0%
TGGGTGTGGTTGTTGAGAAT+TGG + chr1_1:68805610-68805629 None:intergenic 45.0%
TGGAAGGATATACTGCCGAA+AGG - chr1_1:68806028-68806047 Msa0039250:intron 45.0%
CTGTACTGCCATAGCTCAAT+TGG + chr1_1:68806206-68806225 None:intergenic 45.0%
TGATGCATCGGATCTACTCT+TGG + chr1_1:68806469-68806488 None:intergenic 45.0%
CATCAAATGGCATCAGTCCT+GGG - chr1_1:68806484-68806503 Msa0039250:CDS 45.0%
ATCAAATGGCATCAGTCCTG+GGG - chr1_1:68806485-68806504 Msa0039250:CDS 45.0%
! GTCAAATACAGGCTGGTCAA+TGG - chr1_1:68806605-68806624 Msa0039250:CDS 45.0%
! TCAATGGGTTCAGCATCAGA+TGG - chr1_1:68806621-68806640 Msa0039250:CDS 45.0%
GGCTCCTGTAATCTTTCTCT+CGG + chr1_1:68806687-68806706 None:intergenic 45.0%
GAAAGATTACAGGAGCCTTC+AGG - chr1_1:68806690-68806709 Msa0039250:CDS 45.0%
! GATTGTTTCTCTGAAGAGGC+AGG - chr1_1:68806746-68806765 Msa0039250:CDS 45.0%
GAAGAGGCAGGCAGAATTAT+CGG - chr1_1:68806758-68806777 Msa0039250:CDS 45.0%
CAAGACAAATCAACGGTCTC+AGG - chr1_1:68806844-68806863 Msa0039250:CDS 45.0%
! ATCGTCATTGGTCTCCATCA+AGG - chr1_1:68807487-68807506 Msa0039250:CDS 45.0%
ATGAATTGCGGAACCACAAC+AGG - chr1_1:68807774-68807793 Msa0039250:CDS 45.0%
! TTGAAGATGCACAAAGGCAC+AGG - chr1_1:68807951-68807970 Msa0039250:intron 45.0%
! TGAAGATGCACAAAGGCACA+GGG - chr1_1:68807952-68807971 Msa0039250:intron 45.0%
! ACAAAGGCACAGGGATGAAA+AGG - chr1_1:68807961-68807980 Msa0039250:intron 45.0%
CAGTTTGCAGAAAGAACAGG+TGG - chr1_1:68808042-68808061 Msa0039250:intron 45.0%
CTCAAGAATAACAGAGGACG+AGG - chr1_1:68808151-68808170 Msa0039250:CDS 45.0%
CTCATTGTCTCTTGAGGTCA+TGG + chr1_1:68808182-68808201 None:intergenic 45.0%
CATGACCTCAAGAGACAATG+AGG - chr1_1:68808180-68808199 Msa0039250:CDS 45.0%
AAGAGACAATGAGGCTGCTA+AGG - chr1_1:68808189-68808208 Msa0039250:intron 45.0%
TTGACGTCGCATATTAGGAC+AGG - chr1_1:68808296-68808315 Msa0039250:intron 45.0%
AAGGGAACAAGGGATTCAGA+TGG + chr1_1:68808831-68808850 None:intergenic 45.0%
TGATGCTGAACGCCTTACAA+AGG - chr1_1:68808981-68809000 Msa0039250:intron 45.0%
! GACTGCACGGTCCAATTTTT+CGG - chr1_1:68809365-68809384 Msa0039250:intron 45.0%
!! GTCCAATTTTTCGGTCCGTA+TGG - chr1_1:68809374-68809393 Msa0039250:intron 45.0%
GTCCGTATGGTACATTGTCA+AGG - chr1_1:68809387-68809406 Msa0039250:intron 45.0%
GGTACATTGTCAAGGTAACC+AGG - chr1_1:68809395-68809414 Msa0039250:intron 45.0%
GGAGAGGAATAATGTGGGTG+TGG + chr1_1:68805624-68805643 None:intergenic 50.0%
! TGGGGAAGATAATGGTGCTG+TGG - chr1_1:68806152-68806171 Msa0039250:CDS 50.0%
GCATCAAATGGCATCAGTCC+TGG - chr1_1:68806483-68806502 Msa0039250:CDS 50.0%
CAGAACTCAATGCCACCAAG+AGG - chr1_1:68806540-68806559 Msa0039250:CDS 50.0%
TTGGCCTCAACTGTTCCTCT+TGG + chr1_1:68806558-68806577 None:intergenic 50.0%
TTACAGGAGCCTTCAGGCAA+TGG - chr1_1:68806696-68806715 Msa0039250:CDS 50.0%
GTTACAAGCACTTCGGAAGC+AGG - chr1_1:68806788-68806807 Msa0039250:CDS 50.0%
CAGGGACTCTTCTGCTTGAA+TGG + chr1_1:68807624-68807643 None:intergenic 50.0%
TATCGCATCTGAGCAGCTTC+AGG - chr1_1:68807667-68807686 Msa0039250:CDS 50.0%
AGCAGCCTCATTGTCTCTTG+AGG + chr1_1:68808188-68808207 None:intergenic 50.0%
GAATGAAGTGGCGGTCCTAA+AGG - chr1_1:68809011-68809030 Msa0039250:CDS 50.0%
AAGTGGCGGTCCTAAAGGAA+AGG - chr1_1:68809016-68809035 Msa0039250:CDS 50.0%
GCAGTCAGCGCAGCAAATTT+CGG + chr1_1:68809351-68809370 None:intergenic 50.0%
!! AATTTGCTGCGCTGACTGCA+CGG - chr1_1:68809352-68809371 Msa0039250:intron 50.0%
AGGCTACAACATCATACCCC+TGG + chr1_1:68809416-68809435 None:intergenic 50.0%
GACTACATGTGGCCCATATG+AGG + chr1_1:68809436-68809455 None:intergenic 50.0%
TCAGTCCTGGGGTAGCTTCA+TGG - chr1_1:68806496-68806515 Msa0039250:CDS 55.0%
CAGTCCTGGGGTAGCTTCAT+GGG - chr1_1:68806497-68806516 Msa0039250:CDS 55.0%
TCATCCCATGAAGCTACCCC+AGG + chr1_1:68806504-68806523 None:intergenic 55.0%
GCCACCAAGAGGAACAGTTG+AGG - chr1_1:68806551-68806570 Msa0039250:CDS 55.0%
GCCTCAACTGTTCCTCTTGG+TGG + chr1_1:68806555-68806574 None:intergenic 55.0%
GTGGCATTGCCATTGCCTGA+AGG + chr1_1:68806708-68806727 None:intergenic 55.0%
GCGGAACCACAACAGGCTTA+TGG - chr1_1:68807781-68807800 Msa0039250:CDS 55.0%
GGAATGGATGCAGCAAGCAC+TGG - chr1_1:68808762-68808781 Msa0039250:intron 55.0%
CGCATCTGAGCAGCTTCAGG+AGG - chr1_1:68807670-68807689 Msa0039250:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68804603 68809748 68804603 ID=Msa0039250;Name=Msa0039250
chr1_1 mRNA 68804603 68809748 68804603 ID=Msa0039250-mRNA-1;Parent=Msa0039250;Name=Msa0039250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=258|1|1|1|1|1|8|572|854
chr1_1 exon 68804603 68805370 68804603 ID=Msa0039250-mRNA-1:exon:22538;Parent=Msa0039250-mRNA-1
chr1_1 exon 68805546 68805589 68805546 ID=Msa0039250-mRNA-1:exon:22537;Parent=Msa0039250-mRNA-1
chr1_1 exon 68806105 68807898 68806105 ID=Msa0039250-mRNA-1:exon:22536;Parent=Msa0039250-mRNA-1
chr1_1 exon 68808103 68808202 68808103 ID=Msa0039250-mRNA-1:exon:22535;Parent=Msa0039250-mRNA-1
chr1_1 exon 68808302 68808339 68808302 ID=Msa0039250-mRNA-1:exon:22534;Parent=Msa0039250-mRNA-1
chr1_1 exon 68808791 68808913 68808791 ID=Msa0039250-mRNA-1:exon:22533;Parent=Msa0039250-mRNA-1
chr1_1 exon 68809009 68809209 68809009 ID=Msa0039250-mRNA-1:exon:22532;Parent=Msa0039250-mRNA-1
chr1_1 exon 68809422 68809748 68809422 ID=Msa0039250-mRNA-1:exon:22531;Parent=Msa0039250-mRNA-1
chr1_1 five_prime_UTR 68809491 68809748 68809491 ID=Msa0039250-mRNA-1:five_prime_utr;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68809422 68809490 68809422 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68809009 68809209 68809009 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68808791 68808913 68808791 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68808302 68808339 68808302 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68808103 68808202 68808103 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68806105 68807898 68806105 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68805546 68805589 68805546 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 CDS 68805175 68805370 68805175 ID=Msa0039250-mRNA-1:cds;Parent=Msa0039250-mRNA-1
chr1_1 three_prime_UTR 68804603 68805174 68804603 ID=Msa0039250-mRNA-1:three_prime_utr;Parent=Msa0039250-mRNA-1
Gene Sequence

>Msa0039250

ATGTTCAAGTCATGGAGCAAGAAAAACAAGATCAAAGCTGTATTCAAATTGGAATTTCAAGCAACTCAGGTTCCAAAGATGAAAAAGAATGCATTGATGGTATCTTTGGTGCCAGATGATGTTGGGAAACCAACAGTGAAACTAGAGAAAACTGCTGTTCAAGATGGGACTTGTTTATGGGAGAATCCAATTTTTGAATCTGTTAAACTTGTTAGGGATTCAAAATCAGGAATTCTACATGAGAAAATCTACCATTTCATTGTTGCAACTGGTTCTTCAAAATCTGGCTACTTGGGAGAAGCTTCAATTGATTTTGCTGATTTTTTAACAGAAACTGAGCCAATTACTGTTTCTCTGCCCTTGAAATTTGCAAATTCGGGCGTAGTTTTACATGTAACTATTCAGAATGTGGAAGGATATACTGCCGAAAGAAATGGGGAAGATAATGGTGCTGTGGAAATTTATAATGATGGAAGCTTGAAACACCAATTGAGCTATGGCAGTACAGATGAAAGTTACAATCTTGATGAAAATAGCAACTTGGCCAAGAGTAGATCCGATGCATCAAATGGCATCAGTCCTGGGGTAGCTTCATGGGATGACCCTTATAGCTTCAGACAGAACTCAATGCCACCAAGAGGAACAGTTGAGGCCAATGCAACACAAAATCAAGTGCATAAGAGGTCAAATACAGGCTGGTCAATGGGTTCAGCATCAGATGGAAGTTTAGGTGATTGGACAAACGGAACAGAAGACAATTTTCCGAGAGAAAGATTACAGGAGCCTTCAGGCAATGGCAATGCCACCGAAAATCTCAAAAGTGAGATTGTTTCTCTGAAGAGGCAGGCAGAATTATCGGAACTAGAGTTACAAGCACTTCGGAAGCAGGTAGAAAAAGAAAGCAGTCGGGGACAGAATTTATCAAGACAAATCAACGGTCTCAGGGACGAAAGAGATTCACTCAAAACTAAATATGAGCAACTCAAGTCCCAACAGAACTTCAATAATAATAGTAATAATGAGACCAAGACCTCTAAAAGCTTGAAGTCTGATATTGATAATACTAGGCTTCAGTTAGATGCAATAAAGGAAGAGCTTGTTTATGAAAAAGAAATGAGTGGAAATCTTCAATTGCAACTGCAGAAAACACAGAACTCAAATTCTGAACTTCTTTTGGCTGTGACAGACCTTGAAGCAATGCTAGAACAAAAGAATAAGGAAATATTGGATCTATCTTCCAATAGGAAATCTCAAAAGATTACTAAAGAGCGTGATAATGACACAGAATTAAATGTTTTGCGGCAGAAGATTGCAGACCAGAATAGTGAAATAGAGAATTGTTATAAGCAACGCGAGGAGCTAAGCGAGCTTATAAAAGAGCTCACAGTGGAGTATGATCTTCTTAAGAATGAAAATGTGGATATCTCTCTGAGATTAAAGCAAGATGAAGCTCAACATATCATGTTACAAAATGAACACTCGGCTTCTTTAGTTACAATACAACAACTTGAATCCCAAGTGAAGAGACTAGAAGAAAAGATAGAGATGCAGGAAGATGAATTTTCATCGTCATTGGTCTCCATCAAGGAACTTGAAAATCAAGTTAAGTCTTTGGAGAAAGAACTGAGTATACAGGCAGATAAATTTGAAGATGAACTCCAGGCTATGCAAAATGAAAAAACTGAGCAGGAAGAACGGGCCATTCAAGCAGAAGAGTCCCTGAGAAAGACGAGACACAATAATGCTATCGCATCTGAGCAGCTTCAGGAGGAATATAAATTGCTTTCTGTTGAAATGTCATGCAAAGTTGAAGAGAATGAAAAGATGATAACGAAAGCAATCGAAGAAGCTGATGAATTGCGGAACCACAACAGGCTTATGGAAGAAATGCTCCAGAAATGCAATCAAGAGCTCAGGCAAATATCAGATCAACATGAATTGAAAGTGGAAGAGCTCTTGAAACAAATAAGTACAAAAGAAAAAACAATGGAACAGATGTCGCAAGAGTTAGATGTGAAAACTAAAGAACTTGAAGATGCACAAAGGCACAGGGATGAAAAGGATGCTGCATTATCAAAGCAAATTCAAATGCTTGAGATCCAGCACAATGAAATGAAACACAGTTTGCAGAAAGAACAGGTGGACAGAGAAAATATGAAGAAACATATATCTCAATTAGAAGGAGAGGTTAAGAAGAAAGAAGCAGAATTAAATGCTATGGAAAAGAAGCTCAAGAATAACAGAGGACGAGGTGCAGCCATGACCTCAAGAGACAATGAGGCTGCTAAGGCAAATGCAAAGAAATCAAAATCAGAAATGCATAAGGGAATGGATGCAGCAAGCACTGGTATTAGCAAGTCTGAAGGAAGTGATGCTGAACGCCTTACAAAGGAATTATTGAATGAAGTGGCGGTCCTAAAGGAAAGGAACACGAATATGGAAACTGAACTGAAAGAAATGGAAGAAAGATATTCAGAGATTAGTCTGAAATTTGCAGAGGTAGAGGGAGAAAGACAACAGCTTGTTATGGCTGTACGTAATCTCAAGAATGGAAAGAAGAACTAG

Protein sequence

>Msa0039250

MFKSWSKKNKIKAVFKLEFQATQVPKMKKNALMVSLVPDDVGKPTVKLEKTAVQDGTCLWENPIFESVKLVRDSKSGILHEKIYHFIVATGSSKSGYLGEASIDFADFLTETEPITVSLPLKFANSGVVLHVTIQNVEGYTAERNGEDNGAVEIYNDGSLKHQLSYGSTDESYNLDENSNLAKSRSDASNGISPGVASWDDPYSFRQNSMPPRGTVEANATQNQVHKRSNTGWSMGSASDGSLGDWTNGTEDNFPRERLQEPSGNGNATENLKSEIVSLKRQAELSELELQALRKQVEKESSRGQNLSRQINGLRDERDSLKTKYEQLKSQQNFNNNSNNETKTSKSLKSDIDNTRLQLDAIKEELVYEKEMSGNLQLQLQKTQNSNSELLLAVTDLEAMLEQKNKEILDLSSNRKSQKITKERDNDTELNVLRQKIADQNSEIENCYKQREELSELIKELTVEYDLLKNENVDISLRLKQDEAQHIMLQNEHSASLVTIQQLESQVKRLEEKIEMQEDEFSSSLVSIKELENQVKSLEKELSIQADKFEDELQAMQNEKTEQEERAIQAEESLRKTRHNNAIASEQLQEEYKLLSVEMSCKVEENEKMITKAIEEADELRNHNRLMEEMLQKCNQELRQISDQHELKVEELLKQISTKEKTMEQMSQELDVKTKELEDAQRHRDEKDAALSKQIQMLEIQHNEMKHSLQKEQVDRENMKKHISQLEGEVKKKEAELNAMEKKLKNNRGRGAAMTSRDNEAAKANAKKSKSEMHKGMDAASTGISKSEGSDAERLTKELLNEVAVLKERNTNMETELKEMEERYSEISLKFAEVEGERQQLVMAVRNLKNGKKN*