AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0133720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133720 MtrunA17_Chr1g0203361 97.775 854 18 1 1 854 1 853 0.0 1691
Msa0133720 MtrunA17_Chr8g0386571 37.662 770 396 12 1 698 1 758 4.07e-140 441
Msa0133720 MtrunA17_Chr8g0386571 35.417 192 93 4 691 853 845 1034 3.62e-17 86.7
Msa0133720 MtrunA17_Chr5g0397721 36.637 797 427 14 1 727 1 789 2.90e-138 437
Msa0133720 MtrunA17_Chr5g0397721 72.727 55 15 0 799 853 1007 1061 3.93e-15 80.1
Msa0133720 MtrunA17_Chr3g0115391 27.930 401 218 10 5 342 7 399 4.51e-37 151
Msa0133720 MtrunA17_Chr3g0115391 54.545 55 25 0 798 852 1906 1960 7.88e-11 66.2
Msa0133720 MtrunA17_Chr1g0179821 26.809 470 255 12 1 413 1 438 6.12e-25 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0133720 AT5G52280.1 43.407 910 400 20 1 853 1 852 0.0 596
Msa0133720 AT5G41140.1 36.573 998 472 25 1 853 1 982 3.20e-157 485
Msa0133720 AT5G41140.2 36.474 987 481 23 1 853 1 975 4.56e-154 477
Msa0133720 AT1G63300.1 39.258 782 420 16 1 732 1 777 5.00e-139 439
Msa0133720 AT1G22060.2 26.131 685 404 16 5 616 7 662 1.31e-39 159
Msa0133720 AT1G22060.1 26.131 685 404 16 5 616 7 662 1.31e-39 159

Find 172 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCTCTTGATTGCATTTC+TGG 0.028652 1_3:+65049352 None:intergenic
TGATGCTTTGATTGAGAATT+TGG 0.128846 1_3:-65047651 Msa0133720:three_prime_UTR
CTCAAATTCTGAACTTCTTT+TGG 0.164026 1_3:-65050090 Msa0133720:CDS
TCTTATAAGCTAAACATTAT+TGG 0.177334 1_3:+65052397 None:intergenic
TTCAAGATGGGACTTGTTTA+TGG 0.179533 1_3:-65051921 Msa0133720:CDS
GCCCTTGAAATTTGCAAATT+CGG 0.204924 1_3:-65051627 Msa0133720:CDS
TTCAGCTAGATTAATAAATA+TGG 0.240991 1_3:+65052333 None:intergenic
TGAAAATCAAGTTAAGTCTT+TGG 0.245483 1_3:-65049652 Msa0133720:CDS
TTCAAAAGCAGTTTGGTTCT+TGG 0.250839 1_3:-65047448 Msa0133720:three_prime_UTR
AAAATAGAAACTACTAAAAT+TGG 0.254158 1_3:+65047526 None:intergenic
CCCTTGAAATTTGCAAATTC+GGG 0.262697 1_3:-65051626 Msa0133720:CDS
TATTCGTGTTCCTTTCCTTT+AGG 0.264361 1_3:+65048140 None:intergenic
TTGAATCTGTTAAACTTGTT+AGG 0.276431 1_3:-65051885 Msa0133720:CDS
CAGGGACTCTTCTGCTTGAA+TGG 0.294165 1_3:+65049545 None:intergenic
GATCAAAGCTGTATTCAAAT+TGG 0.298730 1_3:-65052278 Msa0133720:CDS
AATTCTCTATTTCACTATTC+TGG 0.302012 1_3:+65049928 None:intergenic
GAGTTCTGTCTGAAGCTATA+AGG 0.304087 1_3:+65050641 None:intergenic
ACAAAAGAATAAGGAAATAT+TGG 0.304705 1_3:-65050039 Msa0133720:CDS
AAGTCACACTCCTTATTTCT+TGG 0.311739 1_3:+65052544 None:intergenic
CTTGTTAGGGATTCAAAATC+AGG 0.313625 1_3:-65051871 Msa0133720:CDS
TCTCAATCAACCAAGAAATA+AGG 0.316778 1_3:-65052554 Msa0133720:five_prime_UTR
TTGTAGGGTTCTTCAAAATC+TGG 0.322934 1_3:-65051719 Msa0133720:intron
TATTGTGTCTCGTCTTTCTC+AGG 0.325981 1_3:+65049526 None:intergenic
AAAGGAAAGGAACACGAATA+TGG 0.334534 1_3:-65048137 Msa0133720:CDS
GAATGCATTGATGGTATCTT+TGG 0.340165 1_3:-65051992 Msa0133720:CDS
AAGGGCAGAGAAACAGTAAT+TGG 0.340819 1_3:+65051644 None:intergenic
AATGCTAGAACAAAAGAATA+AGG 0.342812 1_3:-65050048 Msa0133720:CDS
AGTTGATGTACAGGATAAAT+AGG 0.345911 1_3:+65047863 None:intergenic
CTGTACTGCCATAGCTCAAT+TGG 0.348542 1_3:+65050963 None:intergenic
TTCTTCAAAATCTGGCTACT+TGG 0.349811 1_3:-65051711 Msa0133720:CDS
TATGATGTTGTAGCCTCATA+TGG 0.360562 1_3:-65047746 Msa0133720:three_prime_UTR
TCAGCATCAGATGGAAGTTT+AGG 0.361910 1_3:-65050536 Msa0133720:CDS
TCAGTCCTGGGGTAGCTTCA+TGG 0.364313 1_3:-65050670 Msa0133720:CDS
TTTGTTCTAGCATTGCTTCA+AGG 0.366988 1_3:+65050057 None:intergenic
TTGTAACCCCTGTATATGTT+TGG 0.372707 1_3:+65047962 None:intergenic
CATTCAATAATTCCTTTGTA+AGG 0.376479 1_3:+65048173 None:intergenic
CAGATGGAAGTTTAGGTGAT+TGG 0.379221 1_3:-65050529 Msa0133720:CDS
TCAAGATGGGACTTGTTTAT+GGG 0.381612 1_3:-65051920 Msa0133720:CDS
GCCTCAACTGTTCCTCTTGG+TGG 0.382303 1_3:+65050614 None:intergenic
TATCGCATCTGAGCAGCTTC+AGG 0.385097 1_3:-65049499 Msa0133720:CDS
CACAAAATCAAGTGCATAAG+AGG 0.388926 1_3:-65050583 Msa0133720:CDS
GCTTCAGTTAGATGCAATAA+AGG 0.391713 1_3:-65050177 Msa0133720:CDS
GAAGAGGCAGGCAGAATTAT+CGG 0.394976 1_3:-65050408 Msa0133720:CDS
GCGGAACCACAACAGGCTTA+TGG 0.395493 1_3:-65049385 Msa0133720:CDS
CAAGACAAATCAACGGTCTC+AGG 0.396783 1_3:-65050322 Msa0133720:CDS
GAAGAACTAGAACTCTTTGC+AGG 0.398652 1_3:-65047999 Msa0133720:exon
TGAATCTGTTAAACTTGTTA+GGG 0.399721 1_3:-65051884 Msa0133720:CDS
GGAAACTGAACTGAAAGAAA+TGG 0.401729 1_3:-65048116 Msa0133720:CDS
GTTTCATACCAAACATATAC+AGG 0.407755 1_3:-65047970 Msa0133720:three_prime_UTR
TATTGGATCTATCTTCCAAT+AGG 0.408356 1_3:-65050022 Msa0133720:CDS
TTTCTTCTAGTCTCTTCACT+TGG 0.412470 1_3:+65049730 None:intergenic
AAACATATATCTCAATTAGA+AGG 0.412778 1_3:-65049084 Msa0133720:CDS
TGTTACTTTCAAAAGCAGTT+TGG 0.414328 1_3:-65047455 Msa0133720:three_prime_UTR
GCCCGAATTTGCAAATTTCA+AGG 0.415467 1_3:+65051625 None:intergenic
GCATCAAATGGCATCAGTCC+TGG 0.418524 1_3:-65050683 Msa0133720:CDS
TGTGTTTCATTTCATTGTGC+TGG 0.418901 1_3:+65049145 None:intergenic
GCAGTCAGCGCAGCAAATTT+CGG 0.421568 1_3:+65047818 None:intergenic
GAAAGATTACAGGAGCCTTC+AGG 0.428828 1_3:-65050476 Msa0133720:CDS
TGCAGAAATGGGGAAGATAA+TGG 0.433442 1_3:-65051022 Msa0133720:intron
CTCATTGTCTCTTGAGGTCA+TGG 0.434335 1_3:+65048987 None:intergenic
ATTATTATTGAAGTTCTGTT+GGG 0.435565 1_3:+65050256 None:intergenic
TTACAGTTGCAACAATGAAA+TGG 0.436006 1_3:+65051827 None:intergenic
AGTTCTGTCTGAAGCTATAA+GGG 0.436569 1_3:+65050642 None:intergenic
ATGAATTGCGGAACCACAAC+AGG 0.437283 1_3:-65049392 Msa0133720:CDS
ATAAAACAGACTATGTAGTC+TGG 0.441515 1_3:-65047613 Msa0133720:three_prime_UTR
GTCAAATACAGGCTGGTCAA+TGG 0.441874 1_3:-65050561 Msa0133720:CDS
CAGTCCTGGGGTAGCTTCAT+GGG 0.444592 1_3:-65050669 Msa0133720:CDS
GTTGGTTTCCCAACATCATC+TGG 0.444751 1_3:+65051967 None:intergenic
TTGGCCTCAACTGTTCCTCT+TGG 0.447378 1_3:+65050611 None:intergenic
GACTACATGTGGCCCATATG+AGG 0.448512 1_3:+65047733 None:intergenic
TATTATTATTGAAGTTCTGT+TGG 0.451599 1_3:+65050255 None:intergenic
ATCGTCATTGGTCTCCATCA+AGG 0.466927 1_3:-65049679 Msa0133720:CDS
TTCTTCTAGTCTCTTCACTT+GGG 0.467384 1_3:+65049731 None:intergenic
GGAGAAAGAACTGAGAATAC+AGG 0.469997 1_3:-65049631 Msa0133720:CDS
GCTGTACGTAATCTCAAGAA+TGG 0.473934 1_3:-65048025 Msa0133720:CDS
AGAAGAAAAGATAGAGATGC+AGG 0.477881 1_3:-65049715 Msa0133720:CDS
AGAAGCAGAATTAAATGCTA+TGG 0.479810 1_3:-65049046 Msa0133720:CDS
TCAAATACAGGCTGGTCAAT+GGG 0.480928 1_3:-65050560 Msa0133720:CDS
CATCAAATGGCATCAGTCCT+GGG 0.483449 1_3:-65050682 Msa0133720:CDS
GAATGAAGTGGCGGTCCTAA+AGG 0.486341 1_3:-65048155 Msa0133720:CDS
ACAAAGGCACAGGGATGAAA+AGG 0.486938 1_3:-65049205 Msa0133720:CDS
ATTCTCAATCAAAGCATCAT+AGG 0.487620 1_3:+65047655 None:intergenic
TGATGCATCGGATCTACTCT+TGG 0.487712 1_3:+65050700 None:intergenic
TCTGAAATTTGCAGAGGTAG+AGG 0.487867 1_3:-65048071 Msa0133720:CDS
GTTACAAGCACTTCGGAAGC+AGG 0.487924 1_3:-65050378 Msa0133720:CDS
AGTTTAGGTGATTGGACAAA+CGG 0.490146 1_3:-65050521 Msa0133720:CDS
GTGAGATTGTTTCTCTGAAG+AGG 0.495168 1_3:-65050424 Msa0133720:CDS
AAATTAATTTGTGACAAAGT+CGG 0.499986 1_3:+65052468 None:intergenic
GAGAAAACTGCTGTTCAAGA+TGG 0.500999 1_3:-65051934 Msa0133720:CDS
TCTTCAAAATCTGGCTACTT+GGG 0.505506 1_3:-65051710 Msa0133720:CDS
TAAATTTGAAGATGAACTCC+AGG 0.505676 1_3:-65049604 Msa0133720:CDS
AAGAGACAATGAGGCTGCTA+AGG 0.508811 1_3:-65048977 Msa0133720:CDS
AGCAGCCTCATTGTCTCTTG+AGG 0.509235 1_3:+65048981 None:intergenic
TTGAAGATGCACAAAGGCAC+AGG 0.510046 1_3:-65049215 Msa0133720:CDS
ATTGTGTCTCGTCTTTCTCA+GGG 0.510679 1_3:+65049527 None:intergenic
GCTGTGGAAATTTATAATGA+TGG 0.510768 1_3:-65050998 Msa0133720:CDS
CTTTGGTGCCAGATGATGTT+GGG 0.511310 1_3:-65051975 Msa0133720:CDS
ACACAGTTTGCAGAAAGAAC+AGG 0.512040 1_3:-65049127 Msa0133720:CDS
GTTGGTTAATGAGTTGAAGA+AGG 0.518971 1_3:+65052490 None:intergenic
TTTCTTCCATAAGCCTGTTG+TGG 0.519288 1_3:+65049379 None:intergenic
AGATCAACATGAATTGAAAG+TGG 0.519867 1_3:-65049319 Msa0133720:CDS
AGTAGATCCGATGCATCAAA+TGG 0.520711 1_3:-65050695 Msa0133720:CDS
CCCGAATTTGCAAATTTCAA+GGG 0.521489 1_3:+65051626 None:intergenic
CTGAAATTTGCAGAGGTAGA+GGG 0.524057 1_3:-65048070 Msa0133720:CDS
AGAAAGACAACAGCTTGTTA+TGG 0.526698 1_3:-65048047 Msa0133720:CDS
TAAATTTGGTTACACCATCC+TGG 0.527114 1_3:+65047914 None:intergenic
GGTACATTGTCAAGGTAACC+AGG 0.529091 1_3:-65047771 Msa0133720:three_prime_UTR
AAAGGAATTATTGAATGAAG+TGG 0.532662 1_3:-65048167 Msa0133720:CDS
AGAAATGCAATCAAGAGCTC+AGG 0.533105 1_3:-65049350 Msa0133720:CDS
AGTCTGATATTGATAATACT+AGG 0.533275 1_3:-65050199 Msa0133720:CDS
CTGAAAACATGTTCAAGTCA+TGG 0.540034 1_3:-65052315 Msa0133720:exon
ATTGGAATTTCAAGCAACTC+AGG 0.543027 1_3:-65052260 Msa0133720:intron
AGAAAACTGCTGTTCAAGAT+GGG 0.543774 1_3:-65051933 Msa0133720:CDS
GATTGTTTCTCTGAAGAGGC+AGG 0.546222 1_3:-65050420 Msa0133720:CDS
GGCTCCTGTAATCTTTCTCT+CGG 0.547618 1_3:+65050482 None:intergenic
TTACAGGAGCCTTCAGGCAA+TGG 0.549125 1_3:-65050470 Msa0133720:CDS
GGAATGGATGCTGCAAGCAC+TGG 0.552828 1_3:-65048404 Msa0133720:CDS
CTCAAGAATAACAGAGGACG+AGG 0.553689 1_3:-65049015 Msa0133720:CDS
ACTGATGCCATTTGATGCAT+CGG 0.558366 1_3:+65050688 None:intergenic
ATGATGTTGTAGCCTCATAT+GGG 0.558962 1_3:-65047745 Msa0133720:three_prime_UTR
GTGGCATTGCCATTGCCTGA+AGG 0.565313 1_3:+65050461 None:intergenic
GTGCATAAGAGGTCAAATAC+AGG 0.566002 1_3:-65050572 Msa0133720:CDS
TAATTTGTGACAAAGTCGGT+TGG 0.574688 1_3:+65052472 None:intergenic
AATTTGCTGCGCTGACTGCA+CGG 0.575216 1_3:-65047814 Msa0133720:three_prime_UTR
TCATCCCATGAAGCTACCCC+AGG 0.575983 1_3:+65050665 None:intergenic
TATCTTATAGAATAGCAACT+TGG 0.578135 1_3:-65050723 Msa0133720:intron
CATGTTACAAAATGAACACT+CGG 0.582030 1_3:-65049784 Msa0133720:CDS
TCTTTGGTGCCAGATGATGT+TGG 0.584848 1_3:-65051976 Msa0133720:CDS
TTGAAACACCAATTGAGCTA+TGG 0.589258 1_3:-65050971 Msa0133720:CDS
TATATCTCAATTAGAAGGAG+AGG 0.593443 1_3:-65049079 Msa0133720:CDS
ACAGGTAACTATTCAGAATG+TGG 0.594916 1_3:-65051158 Msa0133720:intron
CGCATCTGAGCAGCTTCAGG+AGG 0.596198 1_3:-65049496 Msa0133720:CDS
GATAAACATTTGACTACATG+TGG 0.600184 1_3:+65047722 None:intergenic
GTTCGTACGGTACATTGTCA+AGG 0.603191 1_3:-65047779 Msa0133720:three_prime_UTR
GTAACTATTCAGAATGTGGA+AGG 0.605000 1_3:-65051154 Msa0133720:CDS
CTACCTTATTTGCAGAAATG+GGG 0.605496 1_3:-65051032 Msa0133720:intron
AACATATACAGGGGTTACAA+AGG 0.605528 1_3:-65047959 Msa0133720:three_prime_UTR
AAGTGGCGGTCCTAAAGGAA+AGG 0.605693 1_3:-65048150 Msa0133720:CDS
TCGAAGAAGCTGATGAATTG+CGG 0.607639 1_3:-65049404 Msa0133720:CDS
AGGCTACAACATCATACCCC+TGG 0.610084 1_3:+65047753 None:intergenic
TCTTCTTAAGAATGAAAATG+TGG 0.611817 1_3:-65049847 Msa0133720:CDS
GATTAGTCTGAAATTTGCAG+AGG 0.613349 1_3:-65048077 Msa0133720:CDS
TCAATGGGTTCAGCATCAGA+TGG 0.615920 1_3:-65050545 Msa0133720:CDS
TTTCATACCAAACATATACA+GGG 0.623324 1_3:-65047969 Msa0133720:three_prime_UTR
AAGACAAATCAACGGTCTCA+GGG 0.626387 1_3:-65050321 Msa0133720:CDS
TGGGGAAGATAATGGTGCTG+TGG 0.626676 1_3:-65051014 Msa0133720:CDS
AAGCAACTGTCAACTTACCT+CGG 0.633419 1_3:-65047574 Msa0133720:three_prime_UTR
ATAAGAGGTCAAATACAGGC+TGG 0.635907 1_3:-65050568 Msa0133720:CDS
AACTAGAGTTACAAGCACTT+CGG 0.636170 1_3:-65050385 Msa0133720:CDS
GGTTAATGAGTTGAAGAAGG+CGG 0.638967 1_3:+65052493 None:intergenic
ACTGGTATTAGCAAGTCTGA+AGG 0.642094 1_3:-65048386 Msa0133720:CDS
GTACATTGTCAAGGTAACCA+GGG 0.643181 1_3:-65047770 Msa0133720:three_prime_UTR
TATCATGATTACTACCAGGA+TGG 0.644495 1_3:-65047928 Msa0133720:three_prime_UTR
TGAAGATGCACAAAGGCACA+GGG 0.646468 1_3:-65049214 Msa0133720:CDS
CAGTTTGCAGAAAGAACAGG+TGG 0.646980 1_3:-65049124 Msa0133720:CDS
TGATGCTGAACGCCTTACAA+AGG 0.649461 1_3:-65048185 Msa0133720:CDS
GTATTAGCAAGTCTGAAGGA+AGG 0.654276 1_3:-65048382 Msa0133720:intron
AAGATATCATGATTACTACC+AGG 0.654676 1_3:-65047932 Msa0133720:three_prime_UTR
GGAATTATTGAATGAAGTGG+CGG 0.655168 1_3:-65048164 Msa0133720:CDS
CATGACCTCAAGAGACAATG+AGG 0.664100 1_3:-65048986 Msa0133720:CDS
ATCAAATGGCATCAGTCCTG+GGG 0.667145 1_3:-65050681 Msa0133720:CDS
TGGAAGGATATACTGCCGAA+AGG 0.668488 1_3:-65051138 Msa0133720:intron
CAGAACTCAATGCCACCAAG+AGG 0.670351 1_3:-65050626 Msa0133720:CDS
AAGAAGCTCAAGAATAACAG+AGG 0.670995 1_3:-65049021 Msa0133720:CDS
GCCACCAAGAGGAACAGTTG+AGG 0.674754 1_3:-65050615 Msa0133720:CDS
ATCAAAATCAGAAATGCACA+AGG 0.683119 1_3:-65048941 Msa0133720:intron
AAGAACTTGAAGATGCACAA+AGG 0.694127 1_3:-65049221 Msa0133720:CDS
TTCATACCAAACATATACAG+GGG 0.700618 1_3:-65047968 Msa0133720:three_prime_UTR
TACATTGTCAAGGTAACCAG+GGG 0.703545 1_3:-65047769 Msa0133720:three_prime_UTR
AATTTATCAAGACAAATCAA+CGG 0.718250 1_3:-65050329 Msa0133720:CDS
GAATTGTTATAAGCAACGCG+AGG 0.741429 1_3:-65049910 Msa0133720:CDS
GCTTATAAAAGAGCTCACAG+TGG 0.747992 1_3:-65049877 Msa0133720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTTAAATCTTTTTTTA+TGG - chr1_3:65048259-65048278 Msa0133720:intron 10.0%
!!! GTAAATATAATTTTATTCAA+TGG + chr1_3:65049247-65049266 None:intergenic 10.0%
!!! TACAATAACATTTTTTATTT+TGG - chr1_3:65051301-65051320 Msa0133720:intron 10.0%
!! ATCAACAAAATATATTATTA+TGG + chr1_3:65051564-65051583 None:intergenic 10.0%
!!! AAATAATAAAAGTTAGTTTT+TGG + chr1_3:65051779-65051798 None:intergenic 10.0%
!!! AAACTAACTTTTATTATTTT+TGG - chr1_3:65051780-65051799 Msa0133720:intron 10.0%
!!! TTTTTCATTATACAACAATT+AGG + chr1_3:65047834-65047853 None:intergenic 15.0%
!!! TGATTTTGTAAAATTGATTA+TGG - chr1_3:65048536-65048555 Msa0133720:intron 15.0%
!! AATGTAAAATGATTTATGTT+TGG - chr1_3:65048572-65048591 Msa0133720:intron 15.0%
!! TTAATATCTGATAATAAGTA+TGG + chr1_3:65051104-65051123 None:intergenic 15.0%
!! AAAATAGAAACTACTAAAAT+TGG + chr1_3:65052482-65052501 None:intergenic 15.0%
!!! AAATTAATTTGTGACAAAGT+CGG + chr1_3:65047540-65047559 None:intergenic 20.0%
!! TCTTATAAGCTAAACATTAT+TGG + chr1_3:65047611-65047630 None:intergenic 20.0%
!! TTCAGCTAGATTAATAAATA+TGG + chr1_3:65047675-65047694 None:intergenic 20.0%
!! AGTTTAACAGATTCAAAAAT+TGG + chr1_3:65048116-65048135 None:intergenic 20.0%
!!! ATTGTTTTGTACTTAAAAGA+AGG - chr1_3:65048223-65048242 Msa0133720:intron 20.0%
!!! TTTTTTTATGGATTCTTGTA+GGG - chr1_3:65048271-65048290 Msa0133720:intron 20.0%
!!! AAATCAATTTTAAGTAACAC+AGG + chr1_3:65048522-65048541 None:intergenic 20.0%
!! AATTTATCAAGACAAATCAA+CGG - chr1_3:65049676-65049695 Msa0133720:CDS 20.0%
!! ATTATTATTGAAGTTCTGTT+GGG + chr1_3:65049752-65049771 None:intergenic 20.0%
!! TATTATTATTGAAGTTCTGT+TGG + chr1_3:65049753-65049772 None:intergenic 20.0%
!! ACAAAAGAATAAGGAAATAT+TGG - chr1_3:65049966-65049985 Msa0133720:CDS 20.0%
!! AAGTACAAAAGAAAAAACAA+TGG - chr1_3:65050728-65050747 Msa0133720:intron 20.0%
!! AAACATATATCTCAATTAGA+AGG - chr1_3:65050921-65050940 Msa0133720:intron 20.0%
!!! TTGATTTTTGTAACATGAAA+AGG - chr1_3:65051579-65051598 Msa0133720:intron 20.0%
!!! TGATTTTTGTAACATGAAAA+GGG - chr1_3:65051580-65051599 Msa0133720:intron 20.0%
!!! TTATGTTTTATGTTGTACAT+AGG - chr1_3:65052501-65052520 Msa0133720:five_prime_UTR 20.0%
!!! TATGTTTTATGTTGTACATA+GGG - chr1_3:65052502-65052521 Msa0133720:five_prime_UTR 20.0%
! TACACTATCAAATCTGAAAA+TGG - chr1_3:65047801-65047820 Msa0133720:three_prime_UTR 25.0%
! ACACTATCAAATCTGAAAAT+GGG - chr1_3:65047802-65047821 Msa0133720:three_prime_UTR 25.0%
! TGAAAAAAAACATGTTTCCT+AGG - chr1_3:65047847-65047866 Msa0133720:three_prime_UTR 25.0%
!!! GTATGAATCTGATTTTGATT+AGG - chr1_3:65047974-65047993 Msa0133720:three_prime_UTR 25.0%
!!! AATGCATTCTTTTTCATCTT+TGG + chr1_3:65048002-65048021 None:intergenic 25.0%
!! TTGAATCTGTTAAACTTGTT+AGG - chr1_3:65048120-65048139 Msa0133720:CDS 25.0%
!!! TGAATCTGTTAAACTTGTTA+GGG - chr1_3:65048121-65048140 Msa0133720:CDS 25.0%
! TAAAAGAAGGATATGTTGAT+TGG - chr1_3:65048236-65048255 Msa0133720:intron 25.0%
!!! CTTTTTTTATGGATTCTTGT+AGG - chr1_3:65048270-65048289 Msa0133720:intron 25.0%
!! AATTTTATCTCCTTCAAAAG+TGG - chr1_3:65048680-65048699 Msa0133720:intron 25.0%
! GTTAAATTAACTGTAGGTTA+TGG + chr1_3:65048903-65048922 None:intergenic 25.0%
! CAAAGGAAAAATTATTGCAA+TGG + chr1_3:65048925-65048944 None:intergenic 25.0%
! TCAAATGAATAAATCCAAAC+AGG + chr1_3:65049139-65049158 None:intergenic 25.0%
! TATCTTATAGAATAGCAACT+TGG - chr1_3:65049282-65049301 Msa0133720:CDS 25.0%
!!! AATCTCACTTTTGAGATTTT+CGG + chr1_3:65049569-65049588 None:intergenic 25.0%
!! AGTCTGATATTGATAATACT+AGG - chr1_3:65049806-65049825 Msa0133720:CDS 25.0%
! GTTTATGAAAAAGAAATGAG+TGG - chr1_3:65049859-65049878 Msa0133720:CDS 25.0%
! AATGCTAGAACAAAAGAATA+AGG - chr1_3:65049957-65049976 Msa0133720:CDS 25.0%
!!! AATCTTTTGAGATTTCCTAT+TGG + chr1_3:65050001-65050020 None:intergenic 25.0%
!! ACACAGAATTAAATGTTTTG+CGG - chr1_3:65050040-65050059 Msa0133720:CDS 25.0%
! AATTCTCTATTTCACTATTC+TGG + chr1_3:65050080-65050099 None:intergenic 25.0%
! TCTTCTTAAGAATGAAAATG+TGG - chr1_3:65050158-65050177 Msa0133720:CDS 25.0%
! TGAAAATCAAGTTAAGTCTT+TGG - chr1_3:65050353-65050372 Msa0133720:CDS 25.0%
! AGTTAGTACTCACAATAAAA+AGG - chr1_3:65051204-65051223 Msa0133720:intron 25.0%
! AGTAATAACCTTAGAATCTA+AGG - chr1_3:65051238-65051257 Msa0133720:intron 25.0%
!!! GAAAAGTGTACATATCATTT+TGG + chr1_3:65051274-65051293 None:intergenic 25.0%
! TGTGGTGATAATATATAACA+AGG - chr1_3:65051430-65051449 Msa0133720:intron 25.0%
!!! CAAATGTTTTGTTATATGGA+TGG + chr1_3:65051716-65051735 None:intergenic 25.0%
! CATCCATATAACAAAACATT+TGG - chr1_3:65051714-65051733 Msa0133720:CDS 25.0%
! CATTCAATAATTCCTTTGTA+AGG + chr1_3:65051835-65051854 None:intergenic 25.0%
! AAAGGAATTATTGAATGAAG+TGG - chr1_3:65051838-65051857 Msa0133720:CDS 25.0%
! TTTCATACCAAACATATACA+GGG - chr1_3:65052036-65052055 Msa0133720:intron 25.0%
!!! CAAAAAGTACTGGTTAAATT+TGG + chr1_3:65052108-65052127 None:intergenic 25.0%
!! AAAAATGTTAGTTGATGTAC+AGG + chr1_3:65052154-65052173 None:intergenic 25.0%
!! TATCATCTGTTTGACATTTT+TGG - chr1_3:65052302-65052321 Msa0133720:CDS 25.0%
! CAAAAAAAATTAGTATACCG+AGG + chr1_3:65052451-65052470 None:intergenic 25.0%
!!! CTCGGTATACTAATTTTTTT+TGG - chr1_3:65052449-65052468 Msa0133720:five_prime_UTR 25.0%
TCTCAATCAACCAAGAAATA+AGG - chr1_3:65047451-65047470 Msa0133720:three_prime_UTR 30.0%
GATCAAAGCTGTATTCAAAT+TGG - chr1_3:65047727-65047746 Msa0133720:three_prime_UTR 30.0%
CACTATCAAATCTGAAAATG+GGG - chr1_3:65047803-65047822 Msa0133720:three_prime_UTR 30.0%
GTGTAAATTTCAAACATCCT+AGG + chr1_3:65047867-65047886 None:intergenic 30.0%
GATGAAAAAGAATGCATTGA+TGG - chr1_3:65048004-65048023 Msa0133720:exon 30.0%
TTACAGTTGCAACAATGAAA+TGG + chr1_3:65048181-65048200 None:intergenic 30.0%
AAGAAAGTAAGAGAGATAGA+GGG + chr1_3:65048425-65048444 None:intergenic 30.0%
GATTAGGAGATGAATAATGT+GGG + chr1_3:65048483-65048502 None:intergenic 30.0%
AGATTAGGAGATGAATAATG+TGG + chr1_3:65048484-65048503 None:intergenic 30.0%
CTTAAGTAGTGCTAAAGATT+AGG + chr1_3:65048499-65048518 None:intergenic 30.0%
! GGAGATAAAATTGATTCTAG+AGG + chr1_3:65048672-65048691 None:intergenic 30.0%
ATACACTAAGAATCAGTGTT+TGG - chr1_3:65048711-65048730 Msa0133720:intron 30.0%
CAATTCTTATGTGAGAAGTT+AGG + chr1_3:65048822-65048841 None:intergenic 30.0%
GCAATGGTTAAATTAACTGT+AGG + chr1_3:65048909-65048928 None:intergenic 30.0%
!!! GTAGAGTTTTTAGTGCATTT+AGG + chr1_3:65048957-65048976 None:intergenic 30.0%
! TCTACCTTATTTGCAGAAAT+GGG - chr1_3:65048972-65048991 Msa0133720:CDS 30.0%
GCTGTGGAAATTTATAATGA+TGG - chr1_3:65049007-65049026 Msa0133720:CDS 30.0%
GTTACAATCTTGATGAAGTA+AGG - chr1_3:65049071-65049090 Msa0133720:CDS 30.0%
CTAAACAGAAACTTCTAACA+AGG - chr1_3:65049201-65049220 Msa0133720:CDS 30.0%
! CTCAAATTCTGAACTTCTTT+TGG - chr1_3:65049915-65049934 Msa0133720:CDS 30.0%
TATTGGATCTATCTTCCAAT+AGG - chr1_3:65049983-65050002 Msa0133720:CDS 30.0%
CATGTTACAAAATGAACACT+CGG - chr1_3:65050221-65050240 Msa0133720:CDS 30.0%
! AGATGAATTTTCATCGTCAT+TGG - chr1_3:65050314-65050333 Msa0133720:CDS 30.0%
!!! TTGATTTTCAAGTTCCTTGA+TGG + chr1_3:65050343-65050362 None:intergenic 30.0%
TAAATTTGAAGATGAACTCC+AGG - chr1_3:65050401-65050420 Msa0133720:CDS 30.0%
!!! TTTTTTCATTTTGCATAGCC+TGG + chr1_3:65050422-65050441 None:intergenic 30.0%
AGATCAACATGAATTGAAAG+TGG - chr1_3:65050686-65050705 Msa0133720:CDS 30.0%
TATATCTCAATTAGAAGGAG+AGG - chr1_3:65050926-65050945 Msa0133720:intron 30.0%
AGAAGCAGAATTAAATGCTA+TGG - chr1_3:65050959-65050978 Msa0133720:CDS 30.0%
ATCAAAATCAGAAATGCACA+AGG - chr1_3:65051064-65051083 Msa0133720:intron 30.0%
AAATTCAACTGTAATGAGTG+AGG - chr1_3:65051402-65051421 Msa0133720:intron 30.0%
AATTCAACTGTAATGAGTGA+GGG - chr1_3:65051403-65051422 Msa0133720:intron 30.0%
TTTGTAACATGAAAAGGGAA+TGG - chr1_3:65051585-65051604 Msa0133720:intron 30.0%
TTGTTATATGGATGGTAAGA+GGG + chr1_3:65051708-65051727 None:intergenic 30.0%
! TTTGTTATATGGATGGTAAG+AGG + chr1_3:65051709-65051728 None:intergenic 30.0%
!! GCACCAAATGTTTTGTTATA+TGG + chr1_3:65051720-65051739 None:intergenic 30.0%
GTTTCATACCAAACATATAC+AGG - chr1_3:65052035-65052054 Msa0133720:intron 30.0%
TTCATACCAAACATATACAG+GGG - chr1_3:65052037-65052056 Msa0133720:intron 30.0%
AAGATATCATGATTACTACC+AGG - chr1_3:65052073-65052092 Msa0133720:intron 30.0%
! AGTTGATGTACAGGATAAAT+AGG + chr1_3:65052145-65052164 None:intergenic 30.0%
GATAAACATTTGACTACATG+TGG + chr1_3:65052286-65052305 None:intergenic 30.0%
! ATTCTCAATCAAAGCATCAT+AGG + chr1_3:65052353-65052372 None:intergenic 30.0%
TGATGCTTTGATTGAGAATT+TGG - chr1_3:65052354-65052373 Msa0133720:five_prime_UTR 30.0%
ATAAAACAGACTATGTAGTC+TGG - chr1_3:65052392-65052411 Msa0133720:five_prime_UTR 30.0%
!! TGTTACTTTCAAAAGCAGTT+TGG - chr1_3:65052550-65052569 Msa0133720:five_prime_UTR 30.0%
! AAGTCACACTCCTTATTTCT+TGG + chr1_3:65047464-65047483 None:intergenic 35.0%
! GTTGGTTAATGAGTTGAAGA+AGG + chr1_3:65047518-65047537 None:intergenic 35.0%
! TAATTTGTGACAAAGTCGGT+TGG + chr1_3:65047536-65047555 None:intergenic 35.0%
CTGAAAACATGTTCAAGTCA+TGG - chr1_3:65047690-65047709 Msa0133720:three_prime_UTR 35.0%
ATTGGAATTTCAAGCAACTC+AGG - chr1_3:65047745-65047764 Msa0133720:three_prime_UTR 35.0%
! GAATGCATTGATGGTATCTT+TGG - chr1_3:65048013-65048032 Msa0133720:CDS 35.0%
!! GTTTTCTCTAGTTTCACTGT+TGG + chr1_3:65048059-65048078 None:intergenic 35.0%
AGAAAACTGCTGTTCAAGAT+GGG - chr1_3:65048072-65048091 Msa0133720:CDS 35.0%
! TTCAAGATGGGACTTGTTTA+TGG - chr1_3:65048084-65048103 Msa0133720:CDS 35.0%
! TCAAGATGGGACTTGTTTAT+GGG - chr1_3:65048085-65048104 Msa0133720:CDS 35.0%
CTTGTTAGGGATTCAAAATC+AGG - chr1_3:65048134-65048153 Msa0133720:CDS 35.0%
TTGTAGGGTTCTTCAAAATC+TGG - chr1_3:65048286-65048305 Msa0133720:intron 35.0%
TTCTTCAAAATCTGGCTACT+TGG - chr1_3:65048294-65048313 Msa0133720:intron 35.0%
TCTTCAAAATCTGGCTACTT+GGG - chr1_3:65048295-65048314 Msa0133720:intron 35.0%
GCCCTTGAAATTTGCAAATT+CGG - chr1_3:65048378-65048397 Msa0133720:intron 35.0%
CCCGAATTTGCAAATTTCAA+GGG + chr1_3:65048382-65048401 None:intergenic 35.0%
CCCTTGAAATTTGCAAATTC+GGG - chr1_3:65048379-65048398 Msa0133720:intron 35.0%
CAAGAAAGTAAGAGAGATAG+AGG + chr1_3:65048426-65048445 None:intergenic 35.0%
!! ATGTGAAGTTCCACTTTTGA+AGG + chr1_3:65048693-65048712 None:intergenic 35.0%
AAGAATCAGTGTTTGGACAT+TGG - chr1_3:65048718-65048737 Msa0133720:intron 35.0%
CACATAAGAATTGTCGAAAC+AGG - chr1_3:65048829-65048848 Msa0133720:intron 35.0%
ACAGGTAACTATTCAGAATG+TGG - chr1_3:65048847-65048866 Msa0133720:intron 35.0%
GTAACTATTCAGAATGTGGA+AGG - chr1_3:65048851-65048870 Msa0133720:intron 35.0%
TATGGTTCATCTTCACCTTT+CGG + chr1_3:65048885-65048904 None:intergenic 35.0%
CATTTAGGAGAGAAAGTCAA+AGG + chr1_3:65048942-65048961 None:intergenic 35.0%
! CTCTACCTTATTTGCAGAAA+TGG - chr1_3:65048971-65048990 Msa0133720:CDS 35.0%
! CTACCTTATTTGCAGAAATG+GGG - chr1_3:65048973-65048992 Msa0133720:CDS 35.0%
TTGAAACACCAATTGAGCTA+TGG - chr1_3:65049034-65049053 Msa0133720:CDS 35.0%
AATTCTATTAAGCGCCTGTT+TGG - chr1_3:65049122-65049141 Msa0133720:CDS 35.0%
! AGTTCTGTCTGAAGCTATAA+GGG + chr1_3:65049366-65049385 None:intergenic 35.0%
! CACTTGATTTTGTGTTGCAT+TGG + chr1_3:65049416-65049435 None:intergenic 35.0%
CACAAAATCAAGTGCATAAG+AGG - chr1_3:65049422-65049441 Msa0133720:CDS 35.0%
AGTTTAGGTGATTGGACAAA+CGG - chr1_3:65049484-65049503 Msa0133720:CDS 35.0%
! TTTTCCGAGAGAAAGATTAC+AGG - chr1_3:65049519-65049538 Msa0133720:CDS 35.0%
AACTAGAGTTACAAGCACTT+CGG - chr1_3:65049620-65049639 Msa0133720:CDS 35.0%
AGGTAGAAAAAGAAAGCAGT+CGG - chr1_3:65049647-65049666 Msa0133720:CDS 35.0%
! ATCAGACTTCAAGCTTTTAG+AGG + chr1_3:65049794-65049813 None:intergenic 35.0%
GCTTCAGTTAGATGCAATAA+AGG - chr1_3:65049828-65049847 Msa0133720:CDS 35.0%
TTTGTTCTAGCATTGCTTCA+AGG + chr1_3:65049951-65049970 None:intergenic 35.0%
TTCTTCTAGTCTCTTCACTT+GGG + chr1_3:65050277-65050296 None:intergenic 35.0%
TTTCTTCTAGTCTCTTCACT+TGG + chr1_3:65050278-65050297 None:intergenic 35.0%
AGAAGAAAAGATAGAGATGC+AGG - chr1_3:65050290-65050309 Msa0133720:CDS 35.0%
GCAAAATGAAAAAACTGAGC+AGG - chr1_3:65050428-65050447 Msa0133720:CDS 35.0%
AAAAAACTGAGCAGGAAGAA+CGG - chr1_3:65050436-65050455 Msa0133720:CDS 35.0%
AAGAACTTGAAGATGCACAA+AGG - chr1_3:65050784-65050803 Msa0133720:intron 35.0%
TGTGTTTCATTTCATTGTGC+TGG + chr1_3:65050863-65050882 None:intergenic 35.0%
AAGAAGCTCAAGAATAACAG+AGG - chr1_3:65050984-65051003 Msa0133720:CDS 35.0%
ACTTATTGACGTCGCATATT+AGG - chr1_3:65051130-65051149 Msa0133720:intron 35.0%
GCATATTAGGACAGGTTAAA+TGG - chr1_3:65051143-65051162 Msa0133720:CDS 35.0%
ACTGAACTCCTTAGATTCTA+AGG + chr1_3:65051249-65051268 None:intergenic 35.0%
!! AACAGTTTTGTAGTGAGTGA+GGG - chr1_3:65051343-65051362 Msa0133720:intron 35.0%
GATTGTGTTAAAGGGAACAA+GGG + chr1_3:65051680-65051699 None:intergenic 35.0%
TGATTGTGTTAAAGGGAACA+AGG + chr1_3:65051681-65051700 None:intergenic 35.0%
GGGTTCATGATTGTGTTAAA+GGG + chr1_3:65051688-65051707 None:intergenic 35.0%
AGGGTTCATGATTGTGTTAA+AGG + chr1_3:65051689-65051708 None:intergenic 35.0%
ATAACACAAATACGACGTTG+TGG + chr1_3:65051742-65051761 None:intergenic 35.0%
GGAATTATTGAATGAAGTGG+CGG - chr1_3:65051841-65051860 Msa0133720:CDS 35.0%
TATTCGTGTTCCTTTCCTTT+AGG + chr1_3:65051868-65051887 None:intergenic 35.0%
AAAGGAAAGGAACACGAATA+TGG - chr1_3:65051868-65051887 Msa0133720:CDS 35.0%
GGAAACTGAACTGAAAGAAA+TGG - chr1_3:65051889-65051908 Msa0133720:CDS 35.0%
!! AGAAAGACAACAGCTTGTTA+TGG - chr1_3:65051958-65051977 Msa0133720:CDS 35.0%
TTGTAACCCCTGTATATGTT+TGG + chr1_3:65052046-65052065 None:intergenic 35.0%
AACATATACAGGGGTTACAA+AGG - chr1_3:65052046-65052065 Msa0133720:intron 35.0%
TATCATGATTACTACCAGGA+TGG - chr1_3:65052077-65052096 Msa0133720:intron 35.0%
TAAATTTGGTTACACCATCC+TGG + chr1_3:65052094-65052113 None:intergenic 35.0%
! AGCAGAAATGCAAAAAGTAC+TGG + chr1_3:65052118-65052137 None:intergenic 35.0%
TATGATGTTGTAGCCTCATA+TGG - chr1_3:65052259-65052278 Msa0133720:intron 35.0%
ATGATGTTGTAGCCTCATAT+GGG - chr1_3:65052260-65052279 Msa0133720:intron 35.0%
!!! TTGTACATAGGGCTAGTTTT+TGG - chr1_3:65052513-65052532 Msa0133720:five_prime_UTR 35.0%
!! TTCAAAAGCAGTTTGGTTCT+TGG - chr1_3:65052557-65052576 Msa0133720:five_prime_UTR 35.0%
! GGTTAATGAGTTGAAGAAGG+CGG + chr1_3:65047515-65047534 None:intergenic 40.0%
GAGAAAACTGCTGTTCAAGA+TGG - chr1_3:65048071-65048090 Msa0133720:CDS 40.0%
AAGGGCAGAGAAACAGTAAT+TGG + chr1_3:65048364-65048383 None:intergenic 40.0%
GCCCGAATTTGCAAATTTCA+AGG + chr1_3:65048383-65048402 None:intergenic 40.0%
AATCAGTGTTTGGACATTGG+TGG - chr1_3:65048721-65048740 Msa0133720:intron 40.0%
ATCAGTGTTTGGACATTGGT+GGG - chr1_3:65048722-65048741 Msa0133720:intron 40.0%
CTTCCCCATTTCTGCAAATA+AGG + chr1_3:65048979-65048998 None:intergenic 40.0%
TGCAGAAATGGGGAAGATAA+TGG - chr1_3:65048983-65049002 Msa0133720:CDS 40.0%
AGTAGATCCGATGCATCAAA+TGG - chr1_3:65049310-65049329 Msa0133720:CDS 40.0%
! ACTGATGCCATTTGATGCAT+CGG + chr1_3:65049320-65049339 None:intergenic 40.0%
! GAGTTCTGTCTGAAGCTATA+AGG + chr1_3:65049367-65049386 None:intergenic 40.0%
GTGCATAAGAGGTCAAATAC+AGG - chr1_3:65049433-65049452 Msa0133720:CDS 40.0%
ATAAGAGGTCAAATACAGGC+TGG - chr1_3:65049437-65049456 Msa0133720:CDS 40.0%
! TCAAATACAGGCTGGTCAAT+GGG - chr1_3:65049445-65049464 Msa0133720:CDS 40.0%
TCAGCATCAGATGGAAGTTT+AGG - chr1_3:65049469-65049488 Msa0133720:CDS 40.0%
CAGATGGAAGTTTAGGTGAT+TGG - chr1_3:65049476-65049495 Msa0133720:CDS 40.0%
!!! CTCACTTTTGAGATTTTCGG+TGG + chr1_3:65049566-65049585 None:intergenic 40.0%
! GTGAGATTGTTTCTCTGAAG+AGG - chr1_3:65049581-65049600 Msa0133720:CDS 40.0%
GGTAGAAAAAGAAAGCAGTC+GGG - chr1_3:65049648-65049667 Msa0133720:CDS 40.0%
GTAGAAAAAGAAAGCAGTCG+GGG - chr1_3:65049649-65049668 Msa0133720:CDS 40.0%
AAGACAAATCAACGGTCTCA+GGG - chr1_3:65049684-65049703 Msa0133720:CDS 40.0%
!! CTTCAAGCTTTTAGAGGTCT+TGG + chr1_3:65049788-65049807 None:intergenic 40.0%
GAATTGTTATAAGCAACGCG+AGG - chr1_3:65050095-65050114 Msa0133720:CDS 40.0%
GCTTATAAAAGAGCTCACAG+TGG - chr1_3:65050128-65050147 Msa0133720:CDS 40.0%
GGAGAAAGAACTGAGAATAC+AGG - chr1_3:65050374-65050393 Msa0133720:CDS 40.0%
AAAAACTGAGCAGGAAGAAC+GGG - chr1_3:65050437-65050456 Msa0133720:CDS 40.0%
ATTGTGTCTCGTCTTTCTCA+GGG + chr1_3:65050481-65050500 None:intergenic 40.0%
TATTGTGTCTCGTCTTTCTC+AGG + chr1_3:65050482-65050501 None:intergenic 40.0%
TCGAAGAAGCTGATGAATTG+CGG - chr1_3:65050601-65050620 Msa0133720:CDS 40.0%
TTTCTTCCATAAGCCTGTTG+TGG + chr1_3:65050629-65050648 None:intergenic 40.0%
TGAGCTCTTGATTGCATTTC+TGG + chr1_3:65050656-65050675 None:intergenic 40.0%
AGAAATGCAATCAAGAGCTC+AGG - chr1_3:65050655-65050674 Msa0133720:CDS 40.0%
ACACAGTTTGCAGAAAGAAC+AGG - chr1_3:65050878-65050897 Msa0133720:intron 40.0%
AATGCACAAGGTAATTGCTC+AGG - chr1_3:65051076-65051095 Msa0133720:intron 40.0%
!! GAACAGTTTTGTAGTGAGTG+AGG - chr1_3:65051342-65051361 Msa0133720:intron 40.0%
GGGTTAACGTTAGAATCTCA+TGG - chr1_3:65051363-65051382 Msa0133720:intron 40.0%
GTAATGAGTGAGGGTTAATG+TGG - chr1_3:65051412-65051431 Msa0133720:intron 40.0%
ACTGGTATTAGCAAGTCTGA+AGG - chr1_3:65051619-65051638 Msa0133720:CDS 40.0%
GTATTAGCAAGTCTGAAGGA+AGG - chr1_3:65051623-65051642 Msa0133720:CDS 40.0%
TCAGCATCACTGTCAGAATT+AGG + chr1_3:65051809-65051828 None:intergenic 40.0%
GCTGTACGTAATCTCAAGAA+TGG - chr1_3:65051980-65051999 Msa0133720:CDS 40.0%
GAAGAACTAGAACTCTTTGC+AGG - chr1_3:65052006-65052025 Msa0133720:CDS 40.0%
!! GTCCAATTTTTCGGTTCGTA+CGG - chr1_3:65052213-65052232 Msa0133720:intron 40.0%
TACCGTACGAACCGAAAAAT+TGG + chr1_3:65052218-65052237 None:intergenic 40.0%
GTACATTGTCAAGGTAACCA+GGG - chr1_3:65052235-65052254 Msa0133720:intron 40.0%
TACATTGTCAAGGTAACCAG+GGG - chr1_3:65052236-65052255 Msa0133720:intron 40.0%
AAGCAACTGTCAACTTACCT+CGG - chr1_3:65052431-65052450 Msa0133720:five_prime_UTR 40.0%
!! TGCAGTGTTGCGTTGTTTTG+TGG + chr1_3:65047648-65047667 None:intergenic 45.0%
!! TCTTTGGTGCCAGATGATGT+TGG - chr1_3:65048029-65048048 Msa0133720:CDS 45.0%
!! CTTTGGTGCCAGATGATGTT+GGG - chr1_3:65048030-65048049 Msa0133720:CDS 45.0%
! GTTGGTTTCCCAACATCATC+TGG + chr1_3:65048041-65048060 None:intergenic 45.0%
TGGGTGTGGTTGTTGAGAAT+TGG + chr1_3:65048464-65048483 None:intergenic 45.0%
GGAGATGAATAATGTGGGTG+TGG + chr1_3:65048478-65048497 None:intergenic 45.0%
TGGAAGGATATACTGCCGAA+AGG - chr1_3:65048867-65048886 Msa0133720:intron 45.0%
CTGTACTGCCATAGCTCAAT+TGG + chr1_3:65049045-65049064 None:intergenic 45.0%
TGATGCATCGGATCTACTCT+TGG + chr1_3:65049308-65049327 None:intergenic 45.0%
CATCAAATGGCATCAGTCCT+GGG - chr1_3:65049323-65049342 Msa0133720:CDS 45.0%
ATCAAATGGCATCAGTCCTG+GGG - chr1_3:65049324-65049343 Msa0133720:CDS 45.0%
! GTCAAATACAGGCTGGTCAA+TGG - chr1_3:65049444-65049463 Msa0133720:CDS 45.0%
! TCAATGGGTTCAGCATCAGA+TGG - chr1_3:65049460-65049479 Msa0133720:CDS 45.0%
GGCTCCTGTAATCTTTCTCT+CGG + chr1_3:65049526-65049545 None:intergenic 45.0%
GAAAGATTACAGGAGCCTTC+AGG - chr1_3:65049529-65049548 Msa0133720:CDS 45.0%
! GATTGTTTCTCTGAAGAGGC+AGG - chr1_3:65049585-65049604 Msa0133720:CDS 45.0%
GAAGAGGCAGGCAGAATTAT+CGG - chr1_3:65049597-65049616 Msa0133720:CDS 45.0%
CAAGACAAATCAACGGTCTC+AGG - chr1_3:65049683-65049702 Msa0133720:CDS 45.0%
! ATCGTCATTGGTCTCCATCA+AGG - chr1_3:65050326-65050345 Msa0133720:CDS 45.0%
ATGAATTGCGGAACCACAAC+AGG - chr1_3:65050613-65050632 Msa0133720:CDS 45.0%
! TTGAAGATGCACAAAGGCAC+AGG - chr1_3:65050790-65050809 Msa0133720:intron 45.0%
! TGAAGATGCACAAAGGCACA+GGG - chr1_3:65050791-65050810 Msa0133720:intron 45.0%
! ACAAAGGCACAGGGATGAAA+AGG - chr1_3:65050800-65050819 Msa0133720:intron 45.0%
CAGTTTGCAGAAAGAACAGG+TGG - chr1_3:65050881-65050900 Msa0133720:intron 45.0%
CTCAAGAATAACAGAGGACG+AGG - chr1_3:65050990-65051009 Msa0133720:CDS 45.0%
CTCATTGTCTCTTGAGGTCA+TGG + chr1_3:65051021-65051040 None:intergenic 45.0%
CATGACCTCAAGAGACAATG+AGG - chr1_3:65051019-65051038 Msa0133720:CDS 45.0%
AAGAGACAATGAGGCTGCTA+AGG - chr1_3:65051028-65051047 Msa0133720:intron 45.0%
TTGACGTCGCATATTAGGAC+AGG - chr1_3:65051135-65051154 Msa0133720:intron 45.0%
AAGGGAACAAGGGATTCAGA+TGG + chr1_3:65051670-65051689 None:intergenic 45.0%
TGATGCTGAACGCCTTACAA+AGG - chr1_3:65051820-65051839 Msa0133720:intron 45.0%
! GACTGCACGGTCCAATTTTT+CGG - chr1_3:65052204-65052223 Msa0133720:intron 45.0%
GTTCGTACGGTACATTGTCA+AGG - chr1_3:65052226-65052245 Msa0133720:intron 45.0%
GGTACATTGTCAAGGTAACC+AGG - chr1_3:65052234-65052253 Msa0133720:intron 45.0%
! TGGGGAAGATAATGGTGCTG+TGG - chr1_3:65048991-65049010 Msa0133720:CDS 50.0%
GCATCAAATGGCATCAGTCC+TGG - chr1_3:65049322-65049341 Msa0133720:CDS 50.0%
CAGAACTCAATGCCACCAAG+AGG - chr1_3:65049379-65049398 Msa0133720:CDS 50.0%
TTGGCCTCAACTGTTCCTCT+TGG + chr1_3:65049397-65049416 None:intergenic 50.0%
TTACAGGAGCCTTCAGGCAA+TGG - chr1_3:65049535-65049554 Msa0133720:CDS 50.0%
GTTACAAGCACTTCGGAAGC+AGG - chr1_3:65049627-65049646 Msa0133720:CDS 50.0%
CAGGGACTCTTCTGCTTGAA+TGG + chr1_3:65050463-65050482 None:intergenic 50.0%
TATCGCATCTGAGCAGCTTC+AGG - chr1_3:65050506-65050525 Msa0133720:CDS 50.0%
AGCAGCCTCATTGTCTCTTG+AGG + chr1_3:65051027-65051046 None:intergenic 50.0%
GAATGAAGTGGCGGTCCTAA+AGG - chr1_3:65051850-65051869 Msa0133720:CDS 50.0%
AAGTGGCGGTCCTAAAGGAA+AGG - chr1_3:65051855-65051874 Msa0133720:CDS 50.0%
GCAGTCAGCGCAGCAAATTT+CGG + chr1_3:65052190-65052209 None:intergenic 50.0%
!! AATTTGCTGCGCTGACTGCA+CGG - chr1_3:65052191-65052210 Msa0133720:intron 50.0%
AGGCTACAACATCATACCCC+TGG + chr1_3:65052255-65052274 None:intergenic 50.0%
GACTACATGTGGCCCATATG+AGG + chr1_3:65052275-65052294 None:intergenic 50.0%
TCAGTCCTGGGGTAGCTTCA+TGG - chr1_3:65049335-65049354 Msa0133720:CDS 55.0%
CAGTCCTGGGGTAGCTTCAT+GGG - chr1_3:65049336-65049355 Msa0133720:CDS 55.0%
TCATCCCATGAAGCTACCCC+AGG + chr1_3:65049343-65049362 None:intergenic 55.0%
GCCACCAAGAGGAACAGTTG+AGG - chr1_3:65049390-65049409 Msa0133720:CDS 55.0%
GCCTCAACTGTTCCTCTTGG+TGG + chr1_3:65049394-65049413 None:intergenic 55.0%
GTGGCATTGCCATTGCCTGA+AGG + chr1_3:65049547-65049566 None:intergenic 55.0%
GCGGAACCACAACAGGCTTA+TGG - chr1_3:65050620-65050639 Msa0133720:CDS 55.0%
GGAATGGATGCTGCAAGCAC+TGG - chr1_3:65051601-65051620 Msa0133720:intron 55.0%
CGCATCTGAGCAGCTTCAGG+AGG - chr1_3:65050509-65050528 Msa0133720:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65047440 65052587 65047440 ID=Msa0133720;Name=Msa0133720
chr1_3 mRNA 65047440 65052587 65047440 ID=Msa0133720-mRNA-1;Parent=Msa0133720;Name=Msa0133720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=258|1|1|1|1|1|8|572|854
chr1_3 exon 65047440 65048207 65047440 ID=Msa0133720-mRNA-1:exon:22016;Parent=Msa0133720-mRNA-1
chr1_3 exon 65048383 65048426 65048383 ID=Msa0133720-mRNA-1:exon:22015;Parent=Msa0133720-mRNA-1
chr1_3 exon 65048942 65050735 65048942 ID=Msa0133720-mRNA-1:exon:22014;Parent=Msa0133720-mRNA-1
chr1_3 exon 65050940 65051039 65050940 ID=Msa0133720-mRNA-1:exon:22013;Parent=Msa0133720-mRNA-1
chr1_3 exon 65051139 65051176 65051139 ID=Msa0133720-mRNA-1:exon:22012;Parent=Msa0133720-mRNA-1
chr1_3 exon 65051613 65051735 65051613 ID=Msa0133720-mRNA-1:exon:22011;Parent=Msa0133720-mRNA-1
chr1_3 exon 65051831 65052031 65051831 ID=Msa0133720-mRNA-1:exon:22010;Parent=Msa0133720-mRNA-1
chr1_3 exon 65052261 65052587 65052261 ID=Msa0133720-mRNA-1:exon:22009;Parent=Msa0133720-mRNA-1
chr1_3 five_prime_UTR 65052330 65052587 65052330 ID=Msa0133720-mRNA-1:five_prime_utr;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65052261 65052329 65052261 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65051831 65052031 65051831 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65051613 65051735 65051613 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65051139 65051176 65051139 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65050940 65051039 65050940 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65048942 65050735 65048942 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65048383 65048426 65048383 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 CDS 65048012 65048207 65048012 ID=Msa0133720-mRNA-1:cds;Parent=Msa0133720-mRNA-1
chr1_3 three_prime_UTR 65047440 65048011 65047440 ID=Msa0133720-mRNA-1:three_prime_utr;Parent=Msa0133720-mRNA-1
Gene Sequence

>Msa0133720

ATGTTCAAGTCATGGAGCAAGAAAAACAAGATCAAAGCTGTATTCAAATTGGAATTTCAAGCAACTCAGGTTCCAAAGATGAAAAAGAATGCATTGATGGTATCTTTGGTGCCAGATGATGTTGGGAAACCAACAGTGAAACTAGAGAAAACTGCTGTTCAAGATGGGACTTGTTTATGGGAGAATCCAATTTTTGAATCTGTTAAACTTGTTAGGGATTCAAAATCAGGAATTCTACATGAGAAAATCTACCATTTCATTGTTGCAACTGGTTCTTCAAAATCTGGCTACTTGGGAGAAGCTTCAATTGATTTTGCTGATTTTTTAACAGAAACTGAGCCAATTACTGTTTCTCTGCCCTTGAAATTTGCAAATTCGGGCGTAGTTTTACATGTAACTATTCAGAATGTGGAAGGATATACTGCCGAAAGAAATGGGGAAGATAATGGTGCTGTGGAAATTTATAATGATGGAAGCTTGAAACACCAATTGAGCTATGGCAGTACAGATGAAAGTTACAATCTTGATGAAAATAGCAACTTGGCCAAGAGTAGATCCGATGCATCAAATGGCATCAGTCCTGGGGTAGCTTCATGGGATGACCCTTATAGCTTCAGACAGAACTCAATGCCACCAAGAGGAACAGTTGAGGCCAATGCAACACAAAATCAAGTGCATAAGAGGTCAAATACAGGCTGGTCAATGGGTTCAGCATCAGATGGAAGTTTAGGTGATTGGACAAACGGAACAGAAGACAATTTTCCGAGAGAAAGATTACAGGAGCCTTCAGGCAATGGCAATGCCACCGAAAATCTCAAAAGTGAGATTGTTTCTCTGAAGAGGCAGGCAGAATTATCGGAACTAGAGTTACAAGCACTTCGGAAGCAGGTAGAAAAAGAAAGCAGTCGGGGACAGAATTTATCAAGACAAATCAACGGTCTCAGGGACGAAAGAGATTCACTCAAAACTAAATATGAGCAACTCAAGTCCCAACAGAACTTCAATAATAATAGTAATAATGAGACCAAGACCTCTAAAAGCTTGAAGTCTGATATTGATAATACTAGGCTTCAGTTAGATGCAATAAAGGAAGAGCTTGTTTATGAAAAAGAAATGAGTGGAAATCTTCAATTGCAACTGCAGAAAACACAGAACTCAAATTCTGAACTTCTTTTGGCTGTGACAGACCTTGAAGCAATGCTAGAACAAAAGAATAAGGAAATATTGGATCTATCTTCCAATAGGAAATCTCAAAAGATTACTAAAGAGCGTGATAATGACACAGAATTAAATGTTTTGCGGCAGAAGATTGCAGACCAGAATAGTGAAATAGAGAATTGTTATAAGCAACGCGAGGAGCTAAGCGAGCTTATAAAAGAGCTCACAGTGGAGTATGATCTTCTTAAGAATGAAAATGTGGATATCTCTCTGAGATTAAAGCAAGATGAAGCTCAACATATCATGTTACAAAATGAACACTCGGCTTCTTTAGTTACAATACAACAACTTGAATCCCAAGTGAAGAGACTAGAAGAAAAGATAGAGATGCAGGAAGATGAATTTTCATCGTCATTGGTCTCCATCAAGGAACTTGAAAATCAAGTTAAGTCTTTGGAGAAAGAACTGAGAATACAGGCAGATAAATTTGAAGATGAACTCCAGGCTATGCAAAATGAAAAAACTGAGCAGGAAGAACGGGCCATTCAAGCAGAAGAGTCCCTGAGAAAGACGAGACACAATAATGCTATCGCATCTGAGCAGCTTCAGGAGGAATATAAATTGCTTTCTGTTGAAATGTCATGCAAAGTTGAAGAGAATGAAAAGATGATAACGAAAGCAATCGAAGAAGCTGATGAATTGCGGAACCACAACAGGCTTATGGAAGAAATGCTCCAGAAATGCAATCAAGAGCTCAGGCAAATATCAGATCAACATGAATTGAAAGTGGAAGAGCTCTTGAAACAAATAAGTACAAAAGAAAAAACAATGGAACAGATGTCGCAAGAGTTAGATGTGAAAACTAAAGAACTTGAAGATGCACAAAGGCACAGGGATGAAAAGGATGCTGCATTATCAAAGCAAATTCAAATGCTTGAGATCCAGCACAATGAAATGAAACACAGTTTGCAGAAAGAACAGGTGGACAGAGAAAATATGAAGAAACATATATCTCAATTAGAAGGAGAGGTTAAGAAGAAAGAAGCAGAATTAAATGCTATGGAAAAGAAGCTCAAGAATAACAGAGGACGAGGTGCAGCCATGACCTCAAGAGACAATGAGGCTGCTAAGGCAAATGCAAAGAAATCAAAATCAGAAATGCACAAGGGAATGGATGCTGCAAGCACTGGTATTAGCAAGTCTGAAGGAAGTGATGCTGAACGCCTTACAAAGGAATTATTGAATGAAGTGGCGGTCCTAAAGGAAAGGAACACGAATATGGAAACTGAACTGAAAGAAATGGAAGAAAGATATTCAGAGATTAGTCTGAAATTTGCAGAGGTAGAGGGAGAAAGACAACAGCTTGTTATGGCTGTACGTAATCTCAAGAATGGAAAGAAGAACTAG

Protein sequence

>Msa0133720

MFKSWSKKNKIKAVFKLEFQATQVPKMKKNALMVSLVPDDVGKPTVKLEKTAVQDGTCLWENPIFESVKLVRDSKSGILHEKIYHFIVATGSSKSGYLGEASIDFADFLTETEPITVSLPLKFANSGVVLHVTIQNVEGYTAERNGEDNGAVEIYNDGSLKHQLSYGSTDESYNLDENSNLAKSRSDASNGISPGVASWDDPYSFRQNSMPPRGTVEANATQNQVHKRSNTGWSMGSASDGSLGDWTNGTEDNFPRERLQEPSGNGNATENLKSEIVSLKRQAELSELELQALRKQVEKESSRGQNLSRQINGLRDERDSLKTKYEQLKSQQNFNNNSNNETKTSKSLKSDIDNTRLQLDAIKEELVYEKEMSGNLQLQLQKTQNSNSELLLAVTDLEAMLEQKNKEILDLSSNRKSQKITKERDNDTELNVLRQKIADQNSEIENCYKQREELSELIKELTVEYDLLKNENVDISLRLKQDEAQHIMLQNEHSASLVTIQQLESQVKRLEEKIEMQEDEFSSSLVSIKELENQVKSLEKELRIQADKFEDELQAMQNEKTEQEERAIQAEESLRKTRHNNAIASEQLQEEYKLLSVEMSCKVEENEKMITKAIEEADELRNHNRLMEEMLQKCNQELRQISDQHELKVEELLKQISTKEKTMEQMSQELDVKTKELEDAQRHRDEKDAALSKQIQMLEIQHNEMKHSLQKEQVDRENMKKHISQLEGEVKKKEAELNAMEKKLKNNRGRGAAMTSRDNEAAKANAKKSKSEMHKGMDAASTGISKSEGSDAERLTKELLNEVAVLKERNTNMETELKEMEERYSEISLKFAEVEGERQQLVMAVRNLKNGKKN*