AlfalfaGEDB | Msa1377570

M. sativa cultivar zhongmu-4 / Msa1377570

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF14215.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377570	XP_013449847.1	98.012	503	10	0	1	503	1	503	0.0	1027

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377570	sp\|A0A3Q7H216\|MTB3_SOLLC	51.683	505	204	9	3	499	2	474	1.08e-166	484

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377570	A0A072UDK3	98.012	503	10	0	1	503	1	503	0.0	1027

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TFs/TRs:

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Gene ID	Type	Classification
Msa1377570	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1377570	0.818341	2.061902e-52	-8.615850e-47
Msa0003220	Msa1377570	0.815845	7.503855e-52	-8.615850e-47
Msa0005270	Msa1377570	0.834075	3.697073e-56	-8.615850e-47
Msa0006110	Msa1377570	0.818913	1.529486e-52	-8.615850e-47
Msa0007440	Msa1377570	0.815454	9.167707e-52	-8.615850e-47
Msa0008220	Msa1377570	0.820286	7.433924e-53	-8.615850e-47
Msa0010770	Msa1377570	0.809294	2.031375e-50	-8.615850e-47
Msa0014570	Msa1377570	0.832613	8.553552e-56	-8.615850e-47
Msa0014710	Msa1377570	0.817063	4.004950e-52	-8.615850e-47
Msa0015120	Msa1377570	0.805102	1.570034e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377570	MtrunA17_Chr7g0260841	98.012	503	10	0	1	503	1	503	0.0	1027
Msa1377570	MtrunA17_Chr7g0275821	54.348	184	65	3	335	502	232	412	9.09e-51	179
Msa1377570	MtrunA17_Chr7g0275821	30.387	181	94	7	5	158	6	181	1.07e-14	76.3
Msa1377570	MtrunA17_Chr8g0346161	28.306	484	242	15	43	481	19	442	1.75e-42	157
Msa1377570	MtrunA17_Chr5g0411341	42.584	209	81	3	328	501	466	670	9.84e-40	152
Msa1377570	MtrunA17_Chr5g0411341	25.967	181	126	4	49	223	44	222	2.37e-11	66.2
Msa1377570	MtrunA17_Chr8g0346151	27.571	457	220	10	63	475	38	427	4.52e-38	145
Msa1377570	MtrunA17_Chr8g0366751	43.575	179	66	3	337	480	444	622	3.72e-37	145
Msa1377570	MtrunA17_Chr8g0366751	28.804	184	123	6	49	226	53	234	1.09e-12	70.5
Msa1377570	MtrunA17_Chr4g0049331	56.250	64	28	0	353	416	133	196	7.66e-17	81.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1377570	AT4G16430.1	47.431	506	220	11	3	502	2	467	5.53e-159	460
Msa1377570	AT2G46510.1	35.000	560	272	14	9	500	9	544	2.34e-93	295
Msa1377570	AT1G01260.1	52.096	167	72	3	338	502	416	576	1.21e-47	174
Msa1377570	AT1G01260.1	36.431	269	138	8	5	245	5	268	1.06e-40	155
Msa1377570	AT1G01260.2	52.096	167	72	3	338	502	416	576	1.21e-47	174
Msa1377570	AT1G01260.2	36.431	269	138	8	5	245	5	268	1.06e-40	155
Msa1377570	AT1G01260.3	52.096	167	72	3	338	502	416	576	1.21e-47	174
Msa1377570	AT1G01260.3	36.431	269	138	8	5	245	5	268	1.06e-40	155
Msa1377570	AT4G17880.1	27.843	510	286	13	49	481	62	566	5.06e-45	167
Msa1377570	AT1G32640.1	42.105	190	81	2	336	500	433	618	1.05e-36	144

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Find 121 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGCCAATGGACGAG+AGG	0.654921	tig0019933:-123037	Msa1377570:CDS
AAACCGGGTGGATATCCAAG+GGG	0.728834	tig0019933:+122746	None:intergenic
AAAGCCGGGGTTATAGAGCT+TGG	0.507196	tig0019933:-123471	Msa1377570:CDS
AAAGGGAGAAAGATGATGTT+AGG	0.390427	tig0019933:-123770	Msa1377570:CDS
AAGATTCATGGTTGCTGGGG+TGG	0.418070	tig0019933:-123732	Msa1377570:CDS
ACACTGTCAGGATCCCAAAG+GGG	0.690461	tig0019933:-123811	Msa1377570:CDS
ACATTCTCCATCAGAACTCA+AGG	0.569500	tig0019933:-122640	Msa1377570:CDS
ACATTGTTAACGGTTCCAAG+TGG	0.664341	tig0019933:-123902	Msa1377570:CDS
ACCAAACACATAATAGACAG+AGG	0.698940	tig0019933:+123641	None:intergenic
ACCACTGAATCATGTTGAAG+CGG	0.606334	tig0019933:-123013	Msa1377570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTAAGAATGAAGAAGACA+AGG	-	tig0019933:122596-122615	Msa1377570:CDS	30.0%
TAAGAAATTGGACAGTGTTT+CGG	-	tig0019933:122962-122981	Msa1377570:CDS	30.0%
AAAAAACATGGCTGACAATA+AGG	-	tig0019933:123808-123827	Msa1377570:CDS	30.0%
AAAAACATGGCTGACAATAA+GGG	-	tig0019933:123809-123828	Msa1377570:CDS	30.0%
ACTTTAACAATTCCAGAAAC+CGG	+	tig0019933:123920-123939	None:intergenic	30.0%
TTGTAAGAATGAAGAAGACA+AGG	-	tig0019933:122596-122615	Msa1377570:CDS	30.0%
TAAGAAATTGGACAGTGTTT+CGG	-	tig0019933:122962-122981	Msa1377570:CDS	30.0%
AAAAAACATGGCTGACAATA+AGG	-	tig0019933:123808-123827	Msa1377570:CDS	30.0%
AAAAACATGGCTGACAATAA+GGG	-	tig0019933:123809-123828	Msa1377570:CDS	30.0%
ACTTTAACAATTCCAGAAAC+CGG	+	tig0019933:123920-123939	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019933	gene	122579	124090	122579	ID=Msa1377570;Name=Msa1377570
tig0019933	mRNA	122579	124090	122579	ID=Msa1377570-mRNA-1;Parent=Msa1377570;Name=Msa1377570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|503
tig0019933	exon	122579	124090	122579	ID=Msa1377570-mRNA-1:exon:5696;Parent=Msa1377570-mRNA-1
tig0019933	CDS	122579	124090	122579	ID=Msa1377570-mRNA-1:cds;Parent=Msa1377570-mRNA-1

Gene Sequence

>Msa1377570

ATGGCTGGTGAGAGGTTTTGTAAGAATGAAGAAGACAAGGCTATGTTGGAATCTGTGTTGGGTAATGAAGCTTTTGCATTTTTTAGCTCAGCTGTTTCAAAACATGTTTTTTCCGATGTTATTGTTCCGCCGAATCTTGACGTGACTATCCACAAAAGGTTGTGTCACATTGTTAACGGTTCCAAGTGGAACTACGCGATTTTGTGGCAGGTTGCCGGTTTGAAATCCGGTGGCTATGTGTTGAAATACGGTGAGGGACACTGTCAGGATCCCAAAGGGGGTCCAAGGAATGAGCAGGAAAGGGAGAAAGATGATGTTAGGAGGAAGGTTTTGGGGAAGATTCATGGTTGCTGGGGTGGATCTAGCTCAGTTGAGAATATTTATAAGAAATTGGACAGTGTTTCGGATTTGTATCTGCTTTACTTGACCTCTGTCTATTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGAAATTCTTTTAAGTGTGCTAAACCAAGTTGGTCTTCTGATGCTGGTAGTTGTTTAAATCAATATGAATCGAGGTCGTTTCTGGCTAAATCGGCTGGTTTTCAAAGTGTTGCTTTTGTACCTCTTAAAGCCGGGGTTATAGAGCTTGGTTCGACGGAGATGGTGCCTGAAGAGCAAGGTTTTTTGGATATGGTCAGGGCAACTTTTGGAGAATCTACCTCTGGACAGGCTAAGGTAGCACCAAAGATTTTTGGGCACGAGTTAAGCTTGGGGGATACAAAATCTCAGTCGATAACTATTAGTTTCTCCCCAAAAGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTACGAAGTACAAGCGCTTGGCGCAAACCATGCTTATGGTAATTCTTCCAACGGGGGTGTAGGAGACAGCAACGAGGCAAAAAAGTACCCTCAGTTGGGTCAAATGATTCCTGGGAATTTTACTTCTCAGGCAAGAGTTTCTTCTATTGATTTAGGTAATGAAGACTCCTCCTCACCTCTTGGAGACGAGCGGAAGCCTAGAAAAAGAGGGAGAAAACCTGCCAATGGACGAGAGGAACCACTGAATCATGTTGAAGCGGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTACGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTTCTTGGTGATGCTATTACCCATATCACTGATCTCCAGAAGAAGATCAAGCTTATGGAAACTGAAAAAAACATGGCTGACAATAAGGGCCAGCAATTGCCATTGCAAGATATTGATTTTCAGGCTCGACAGGATGATGCAGTTGTTAGAGTTAGCTGCCCCTTGGATATCCACCCGGTTTCTGGAATTGTTAAAGTGTTCAGAGAGCATCAAATTGTAGCTCAAGAGGCCAATGTTTCAACTTCCCAGGATAAAGTAATTCATACATTCTCCATCAGAACTCAAGGAGGGGAAGCAGCTGCTATACAGTTGAAAGAAAAGCTTGAAGCATCTTTAGCCAAAAATTAA

Protein sequence

>Msa1377570

MAGERFCKNEEDKAMLESVLGNEAFAFFSSAVSKHVFSDVIVPPNLDVTIHKRLCHIVNGSKWNYAILWQVAGLKSGGYVLKYGEGHCQDPKGGPRNEQEREKDDVRRKVLGKIHGCWGGSSSVENIYKKLDSVSDLYLLYLTSVYYVFGFNSQYGPGNSFKCAKPSWSSDAGSCLNQYESRSFLAKSAGFQSVAFVPLKAGVIELGSTEMVPEEQGFLDMVRATFGESTSGQAKVAPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGGVGDSNEAKKYPQLGQMIPGNFTSQARVSSIDLGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLMETEKNMADNKGQQLPLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVFREHQIVAQEANVSTSQDKVIHTFSIRTQGGEAAAIQLKEKLEASLAKN*