Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370250 | XP_003601125.1 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 8.81e-83 | 249 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370250 | sp|Q54T60|TMM50_DICDI | 30.081 | 123 | 71 | 3 | 12 | 119 | 10 | 132 | 2.84e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370250 | B7FGM3 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 4.21e-83 | 249 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0209080 | Msa0370250 | 0.801340 | 9.429056e-49 | -8.615850e-47 |
Msa0209500 | Msa0370250 | 0.810846 | 9.405871e-51 | -8.615850e-47 |
Msa0370250 | Msa0479270 | 0.800242 | 1.580164e-48 | -8.615850e-47 |
Msa0370250 | Msa0547160 | 0.806291 | 8.833648e-50 | -8.615850e-47 |
Msa0370250 | Msa1186360 | 0.802056 | 6.723869e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370250 | MtrunA17_Chr3g0115201 | 100.000 | 125 | 0 | 0 | 1 | 125 | 1 | 125 | 8.10e-87 | 249 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0370250 | AT1G36980.1 | 83.200 | 125 | 21 | 0 | 1 | 125 | 1 | 125 | 4.66e-74 | 217 |
Msa0370250 | AT1G36980.2 | 83.200 | 125 | 21 | 0 | 1 | 125 | 1 | 125 | 4.66e-74 | 217 |
Find 37 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATGGACTTAATCGAATTA+TGG | 0.237793 | 3_1:-67840086 | Msa0370250:CDS |
GTGTCCTTTGTTTCTTTAGC+TGG | 0.292476 | 3_1:-67836899 | Msa0370250:CDS |
CCATTTCTTCACTACCTTCC+TGG | 0.294772 | 3_1:-67839973 | Msa0370250:intron |
TCGGTGCCGGCTGGTGGATC+TGG | 0.314660 | 3_1:-67840029 | Msa0370250:CDS |
GTGTAACGGAGAACCGAAAA+TGG | 0.315182 | 3_1:-67840103 | Msa0370250:exon |
AAGATTTGTCAAGTGAATCT+TGG | 0.381108 | 3_1:+67836858 | None:intergenic |
AATGGACTTAATCGAATTAT+GGG | 0.397303 | 3_1:-67840085 | Msa0370250:CDS |
TGAGTGCAACGTTTCCTCTC+TGG | 0.397706 | 3_1:+67835939 | None:intergenic |
CCAGGAAGGTAGTGAAGAAA+TGG | 0.405204 | 3_1:+67839973 | None:intergenic |
TCAGTGTGGACTGGAATTGC+AGG | 0.434993 | 3_1:-67836830 | Msa0370250:CDS |
GATTATTCTCCTTATGATGA+AGG | 0.437959 | 3_1:-67839801 | Msa0370250:CDS |
CTCCACTCTCCTTCATCATA+AGG | 0.455800 | 3_1:+67839792 | None:intergenic |
AATGTGTATTTGTCTTGATC+AGG | 0.469326 | 3_1:-67836799 | Msa0370250:intron |
GTTTCTTTAGCTGGATCAGC+GGG | 0.479953 | 3_1:-67836890 | Msa0370250:CDS |
CAATTCCAGTCCACACTGAT+GGG | 0.488024 | 3_1:+67836834 | None:intergenic |
AAAACTGCTCCGGCGACGCC+AGG | 0.490397 | 3_1:+67840051 | None:intergenic |
CGTAAACCCAACAACAGAAA+AGG | 0.490546 | 3_1:+67840125 | None:intergenic |
GCAATTCCAGTCCACACTGA+TGG | 0.522479 | 3_1:+67836833 | None:intergenic |
GTGAAGAAATGGAACGGTGG+TGG | 0.524494 | 3_1:+67839984 | None:intergenic |
GTTGTTGGGTTTACGTGTAA+CGG | 0.540400 | 3_1:-67840117 | Msa0370250:five_prime_UTR |
TCTCAAAGTAACATCAACAC+TGG | 0.549404 | 3_1:-67840162 | None:intergenic |
TCTTCCCCATCAGTGTGGAC+TGG | 0.560606 | 3_1:-67836839 | Msa0370250:CDS |
GCCGGCACCGAAAACTGCTC+CGG | 0.565156 | 3_1:+67840041 | None:intergenic |
CTCAAAGTAACATCAACACT+GGG | 0.581282 | 3_1:-67840161 | None:intergenic |
GTCAAGCCAGATCCACCAGC+CGG | 0.587300 | 3_1:+67840023 | None:intergenic |
ACGTTGCACTCACTCGAAGT+TGG | 0.606490 | 3_1:-67835928 | Msa0370250:CDS |
CTCCTTATGATGAAGGAGAG+TGG | 0.610099 | 3_1:-67839794 | Msa0370250:CDS |
TGTTTCTTTAGCTGGATCAG+CGG | 0.614958 | 3_1:-67836891 | Msa0370250:CDS |
AGATGTGAAACTGACCAGGA+AGG | 0.635158 | 3_1:+67839959 | None:intergenic |
TGATCCAGCTAAAGAAACAA+AGG | 0.642275 | 3_1:+67836895 | None:intergenic |
TTGTTAACAGACTGAAGCTG+TGG | 0.644695 | 3_1:-67836940 | Msa0370250:intron |
ACAAATCTTCCCCATCAGTG+TGG | 0.656630 | 3_1:-67836844 | Msa0370250:CDS |
AATTCCAGTCCACACTGATG+GGG | 0.663062 | 3_1:+67836835 | None:intergenic |
AAGGTAGTGAAGAAATGGAA+CGG | 0.682128 | 3_1:+67839978 | None:intergenic |
CTTATGATGAAGGAGAGTGG+AGG | 0.705263 | 3_1:-67839791 | Msa0370250:intron |
GTAGTGAAGAAATGGAACGG+TGG | 0.714297 | 3_1:+67839981 | None:intergenic |
TTGAACTCAGCAAACCAGAG+AGG | 0.714330 | 3_1:-67835953 | Msa0370250:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTCAAAACATATAAATAAA+AGG | + | chr3_1:67838593-67838612 | None:intergenic | 10.0% |
!!! | TTTATTTATATGTTTTGAAT+TGG | - | chr3_1:67838593-67838612 | Msa0370250:intron | 10.0% |
!!! | TTATTTATATGTTTTGAATT+GGG | - | chr3_1:67838594-67838613 | Msa0370250:intron | 10.0% |
!! | TAAATATTTACTAATATGAT+TGG | + | chr3_1:67839413-67839432 | None:intergenic | 10.0% |
!!! | CATTATTTGAAATAAAAATT+AGG | + | chr3_1:67839497-67839516 | None:intergenic | 10.0% |
!!! | AACTTAATTTTATCTTTTTC+TGG | + | chr3_1:67836452-67836471 | None:intergenic | 15.0% |
!!! | ATTTAGTTGTTTTTAGATAA+AGG | - | chr3_1:67837736-67837755 | Msa0370250:intron | 15.0% |
!!! | TATTTATATGTTTTGAATTG+GGG | - | chr3_1:67838595-67838614 | Msa0370250:intron | 15.0% |
!!! | ATTTTTAATAGTTTTCAACA+CGG | + | chr3_1:67839374-67839393 | None:intergenic | 15.0% |
!!! | ATTTCAAATAATGTTTCTTT+TGG | - | chr3_1:67839504-67839523 | Msa0370250:intron | 15.0% |
!! | AATTTAAAGATTGACATAAA+AGG | + | chr3_1:67839730-67839749 | None:intergenic | 15.0% |
!!! | TTTTATGTCAATCTTTAAAT+TGG | - | chr3_1:67839729-67839748 | Msa0370250:intron | 15.0% |
!!! | TCTTTTAGTTTTAGACTTTT+AGG | - | chr3_1:67836142-67836161 | Msa0370250:intron | 20.0% |
!!! | TCATTTGATTTGTTAATTGT+TGG | - | chr3_1:67836314-67836333 | Msa0370250:intron | 20.0% |
!!! | AACTCTTACAATTTTATGAT+CGG | - | chr3_1:67837933-67837952 | Msa0370250:intron | 20.0% |
!! | CTCAATAAGCAAAAAAAAAA+AGG | - | chr3_1:67838060-67838079 | Msa0370250:intron | 20.0% |
!! | AATAAGCAAAAAAAAAAAGG+TGG | - | chr3_1:67838063-67838082 | Msa0370250:intron | 20.0% |
!! | ATAAGCAAAAAAAAAAAGGT+GGG | - | chr3_1:67838064-67838083 | Msa0370250:intron | 20.0% |
!! | ATTTCTTTAAATTTGTGAGT+GGG | + | chr3_1:67838494-67838513 | None:intergenic | 20.0% |
!! | AATTTCTTTAAATTTGTGAG+TGG | + | chr3_1:67838495-67838514 | None:intergenic | 20.0% |
!!! | ATTTATATGTTTTGAATTGG+GGG | - | chr3_1:67838596-67838615 | Msa0370250:intron | 20.0% |
!! | TAAACTTTCAATTTGACATT+AGG | + | chr3_1:67839638-67839657 | None:intergenic | 20.0% |
!! | TGTCAAATTGAAAGTTTAAA+AGG | - | chr3_1:67839640-67839659 | Msa0370250:intron | 20.0% |
!! | AAAATAATCATCAAACAAGT+AGG | + | chr3_1:67839777-67839796 | None:intergenic | 20.0% |
!! | ACCACATTAAATAAAGAAAA+TGG | + | chr3_1:67839921-67839940 | None:intergenic | 20.0% |
!! | AATTCGATTAAGTCCATTTT+CGG | + | chr3_1:67835976-67835995 | None:intergenic | 25.0% |
!! | AAATGGACTTAATCGAATTA+TGG | - | chr3_1:67835977-67835996 | Msa0370250:intron | 25.0% |
!! | AATGGACTTAATCGAATTAT+GGG | - | chr3_1:67835978-67835997 | Msa0370250:intron | 25.0% |
! | AATCAAATGAGCAATAAAGT+AGG | + | chr3_1:67836304-67836323 | None:intergenic | 25.0% |
!!! | ATGTTGTTTGACTTGAAAAT+CGG | - | chr3_1:67836357-67836376 | Msa0370250:intron | 25.0% |
! | TTGTCGTAACTCATAAATAT+AGG | + | chr3_1:67836392-67836411 | None:intergenic | 25.0% |
! | ATGAAAACAATTTCTGACAT+TGG | + | chr3_1:67836565-67836584 | None:intergenic | 25.0% |
!!! | GCTTATTTTAGTTTATCTAC+TGG | + | chr3_1:67836623-67836642 | None:intergenic | 25.0% |
! | TTCAAAATAGTCACTTCTTA+GGG | + | chr3_1:67836659-67836678 | None:intergenic | 25.0% |
! | ATTCAAAATAGTCACTTCTT+AGG | + | chr3_1:67836660-67836679 | None:intergenic | 25.0% |
! | AAGACTGTTACATAAACAAA+AGG | + | chr3_1:67837386-67837405 | None:intergenic | 25.0% |
!!! | TTTATTTTGGTCAAACAATG+TGG | - | chr3_1:67837676-67837695 | Msa0370250:intron | 25.0% |
! | AAGTCTGACAAATTTACAAT+TGG | - | chr3_1:67838710-67838729 | Msa0370250:intron | 25.0% |
! | ACAAATTTACAATTGGTGTA+TGG | - | chr3_1:67838717-67838736 | Msa0370250:intron | 25.0% |
! | TTGACTATCTCAATTTAAGA+GGG | - | chr3_1:67838798-67838817 | Msa0370250:intron | 25.0% |
! | AAAATAGATTGGAAAATTGC+TGG | + | chr3_1:67838914-67838933 | None:intergenic | 25.0% |
! | AACTGGTCAAAAAAATAGAT+TGG | + | chr3_1:67838925-67838944 | None:intergenic | 25.0% |
!!! | CTATTTTTTTGACCAGTTAT+TGG | - | chr3_1:67838927-67838946 | Msa0370250:intron | 25.0% |
! | CCTAGAAAATAAACATACAA+GGG | + | chr3_1:67838958-67838977 | None:intergenic | 25.0% |
! | ACCTAGAAAATAAACATACA+AGG | + | chr3_1:67838959-67838978 | None:intergenic | 25.0% |
! | TTCCTTCAATGATAAATTCA+AGG | + | chr3_1:67839351-67839370 | None:intergenic | 25.0% |
! | TGGATAACTTGAAATCATTA+TGG | - | chr3_1:67839524-67839543 | Msa0370250:intron | 25.0% |
!!! | CAAGTTTTTGACTTAAATGA+TGG | + | chr3_1:67839691-67839710 | None:intergenic | 25.0% |
!!! | GCCATTTTCTTTATTTAATG+TGG | - | chr3_1:67839917-67839936 | Msa0370250:intron | 25.0% |
! | AGATTACCTTTTCTGTTGTT+GGG | - | chr3_1:67835932-67835951 | Msa0370250:CDS | 30.0% |
!!! | CTTTTGATTGTTGTTTTCGA+AGG | - | chr3_1:67836184-67836203 | Msa0370250:intron | 30.0% |
GATTATTCTCCTTATGATGA+AGG | - | chr3_1:67836262-67836281 | Msa0370250:intron | 30.0% | |
AAATGAGCAATAAAGTAGGT+AGG | + | chr3_1:67836300-67836319 | None:intergenic | 30.0% | |
CAACATCACAATAATCAACA+AGG | + | chr3_1:67836343-67836362 | None:intergenic | 30.0% | |
!! | GTTGTTTTCATAAGCTGTAT+TGG | - | chr3_1:67836496-67836515 | Msa0370250:intron | 30.0% |
TTCTTAGGGAATGTTTGAAT+TGG | + | chr3_1:67836645-67836664 | None:intergenic | 30.0% | |
TTAAATGAGAATTCTCATGC+AGG | + | chr3_1:67836735-67836754 | None:intergenic | 30.0% | |
AAAGTTTGTATGTGACTGTT+TGG | + | chr3_1:67836800-67836819 | None:intergenic | 30.0% | |
ATCAATGCTTACAAGTTTAC+TGG | - | chr3_1:67836842-67836861 | Msa0370250:CDS | 30.0% | |
GAATTTATTGGCAAATTCTC+TGG | + | chr3_1:67836878-67836897 | None:intergenic | 30.0% | |
GAGATGTCAATGGAATTTAT+TGG | + | chr3_1:67836890-67836909 | None:intergenic | 30.0% | |
ATTGATGCTAGTAAGTCTAT+AGG | - | chr3_1:67836917-67836936 | Msa0370250:CDS | 30.0% | |
!! | TAGGCATCATTTTTCTAACT+AGG | - | chr3_1:67836936-67836955 | Msa0370250:intron | 30.0% |
ATACTGACATGTCAAAGATT+TGG | - | chr3_1:67836967-67836986 | Msa0370250:intron | 30.0% | |
AAAATAATTCACTGAGGTAG+TGG | + | chr3_1:67837243-67837262 | None:intergenic | 30.0% | |
AAGCACAAAATAATTCACTG+AGG | + | chr3_1:67837249-67837268 | None:intergenic | 30.0% | |
TAGAGTAATTCTCTTAGAAG+CGG | - | chr3_1:67837325-67837344 | Msa0370250:intron | 30.0% | |
AACATTTGATTCATCTCTTG+TGG | + | chr3_1:67837621-67837640 | None:intergenic | 30.0% | |
ACAAGAGATGAATCAAATGT+TGG | - | chr3_1:67837620-67837639 | Msa0370250:intron | 30.0% | |
TTGTTTGACCAAAATAAACC+AGG | + | chr3_1:67837674-67837693 | None:intergenic | 30.0% | |
ATAAAGGAAGTCTTTCTTTG+AGG | - | chr3_1:67837752-67837771 | Msa0370250:intron | 30.0% | |
! | CGAGTCTTAAATTGTTATTG+TGG | - | chr3_1:67837803-67837822 | Msa0370250:intron | 30.0% |
! | AATTTTATGATCGGAGTCTA+TGG | - | chr3_1:67837942-67837961 | Msa0370250:intron | 30.0% |
!! | GACCAAGAAGTATTTATTTG+AGG | - | chr3_1:67838205-67838224 | Msa0370250:intron | 30.0% |
CTCCTCAAATAAATACTTCT+TGG | + | chr3_1:67838210-67838229 | None:intergenic | 30.0% | |
AGTATTTATTTGAGGAGTTG+AGG | - | chr3_1:67838213-67838232 | Msa0370250:intron | 30.0% | |
! | ACTCATTTTACGCAATTTGA+GGG | + | chr3_1:67838265-67838284 | None:intergenic | 30.0% |
ACTTGCATGAACAAATTACT+AGG | + | chr3_1:67838440-67838459 | None:intergenic | 30.0% | |
CATGCAAATGATTTAACGAA+AGG | + | chr3_1:67838546-67838565 | None:intergenic | 30.0% | |
CTTTCGTTAAATCATTTGCA+TGG | - | chr3_1:67838544-67838563 | Msa0370250:intron | 30.0% | |
!! | GTCAAGTTGATAGATATATG+TGG | + | chr3_1:67838783-67838802 | None:intergenic | 30.0% |
CTTGACTATCTCAATTTAAG+AGG | - | chr3_1:67838797-67838816 | Msa0370250:intron | 30.0% | |
AAACCAGCAAATTCATAACA+TGG | + | chr3_1:67838884-67838903 | None:intergenic | 30.0% | |
!! | TTTTTGACCAGTTATTGGTT+TGG | - | chr3_1:67838932-67838951 | Msa0370250:intron | 30.0% |
!! | CCCTTGTATGTTTATTTTCT+AGG | - | chr3_1:67838955-67838974 | Msa0370250:intron | 30.0% |
!! | TTAAGAAGCTTTGAACTAAG+GGG | + | chr3_1:67839046-67839065 | None:intergenic | 30.0% |
!! | CTTAAGAAGCTTTGAACTAA+GGG | + | chr3_1:67839047-67839066 | None:intergenic | 30.0% |
!! | TCTTAAGAAGCTTTGAACTA+AGG | + | chr3_1:67839048-67839067 | None:intergenic | 30.0% |
AAAGCTTCTTAAGAATCACA+TGG | - | chr3_1:67839054-67839073 | Msa0370250:intron | 30.0% | |
AGTCTGTTAACAAGAGTAAA+AGG | + | chr3_1:67839116-67839135 | None:intergenic | 30.0% | |
AAGATTTGTCAAGTGAATCT+TGG | + | chr3_1:67839208-67839227 | None:intergenic | 30.0% | |
AATGTGTATTTGTCTTGATC+AGG | - | chr3_1:67839264-67839283 | Msa0370250:intron | 30.0% | |
TAACAACTCAAGAGGAAAAT+CGG | + | chr3_1:67839318-67839337 | None:intergenic | 30.0% | |
!! | ATTTTCCTCTTGAGTTGTTA+TGG | - | chr3_1:67839318-67839337 | Msa0370250:intron | 30.0% |
! | TTTTTCCATAACAACTCAAG+AGG | + | chr3_1:67839326-67839345 | None:intergenic | 30.0% |
TGCCTTGAATTTATCATTGA+AGG | - | chr3_1:67839346-67839365 | Msa0370250:intron | 30.0% | |
CAATTTGACATTAGGACATT+AGG | + | chr3_1:67839630-67839649 | None:intergenic | 30.0% | |
TTAATGTGGTGATAAATAGC+TGG | - | chr3_1:67839931-67839950 | Msa0370250:intron | 30.0% | |
! | GAGATTACCTTTTCTGTTGT+TGG | - | chr3_1:67835931-67835950 | Msa0370250:CDS | 35.0% |
! | ATCGAATTATGGGCGATTTT+CGG | - | chr3_1:67835988-67836007 | Msa0370250:intron | 35.0% |
AAGGTAGTGAAGAAATGGAA+CGG | + | chr3_1:67836088-67836107 | None:intergenic | 35.0% | |
!! | GTTTTGTTGTGAGACTGTTT+GGG | + | chr3_1:67836595-67836614 | None:intergenic | 35.0% |
!!! | AGTTTTGTTGTGAGACTGTT+TGG | + | chr3_1:67836596-67836615 | None:intergenic | 35.0% |
GTGACTGTTTGGCTAATTTA+CGG | + | chr3_1:67836789-67836808 | None:intergenic | 35.0% | |
AATTTGAGGAGAGATGTCAA+TGG | + | chr3_1:67836900-67836919 | None:intergenic | 35.0% | |
GACTTACTAGCATCAATTTG+AGG | + | chr3_1:67836914-67836933 | None:intergenic | 35.0% | |
GAGATAGAGTGATAATTCCT+TGG | - | chr3_1:67837033-67837052 | Msa0370250:intron | 35.0% | |
TCTGTGATAATTTGGTTGTG+TGG | + | chr3_1:67837185-67837204 | None:intergenic | 35.0% | |
! | CTTTTACATGATGTAAGCAG+TGG | - | chr3_1:67837266-67837285 | Msa0370250:intron | 35.0% |
GGAATTGAACAAAGCGTATA+AGG | - | chr3_1:67837287-67837306 | Msa0370250:intron | 35.0% | |
! | GTTTTCTCTTGTAAGAGCTT+AGG | - | chr3_1:67837356-67837375 | Msa0370250:intron | 35.0% |
! | ATTGATGGAGCACTCAAAAT+AGG | + | chr3_1:67837418-67837437 | None:intergenic | 35.0% |
!! | ATTTTGAGTGCTCCATCAAT+TGG | - | chr3_1:67837418-67837437 | Msa0370250:intron | 35.0% |
!! | ACATTTTGACAGCATCAGAT+TGG | + | chr3_1:67837465-67837484 | None:intergenic | 35.0% |
GTACGACTTATCATCAATAG+TGG | + | chr3_1:67837497-67837516 | None:intergenic | 35.0% | |
! | ATGTTTGGCCTGGTTTATTT+TGG | - | chr3_1:67837663-67837682 | Msa0370250:intron | 35.0% |
! | AGGGAGTTTTCATAAACTCA+TGG | + | chr3_1:67837973-67837992 | None:intergenic | 35.0% |
AACTCCCTAGTTTGACAATT+TGG | - | chr3_1:67837985-67838004 | Msa0370250:intron | 35.0% | |
ACTCCCTAGTTTGACAATTT+GGG | - | chr3_1:67837986-67838005 | Msa0370250:intron | 35.0% | |
GACAATTTGGGCCTAATTAT+TGG | - | chr3_1:67837998-67838017 | Msa0370250:intron | 35.0% | |
!! | AAAAAAAAAAAGGTGGGCTG+TGG | - | chr3_1:67838070-67838089 | Msa0370250:intron | 35.0% |
!! | AAAAAAAAAAGGTGGGCTGT+GGG | - | chr3_1:67838071-67838090 | Msa0370250:intron | 35.0% |
AATTGGTTACATTGCTGAGT+TGG | - | chr3_1:67838102-67838121 | Msa0370250:intron | 35.0% | |
ATTGGTTACATTGCTGAGTT+GGG | - | chr3_1:67838103-67838122 | Msa0370250:intron | 35.0% | |
! | CACTCATTTTACGCAATTTG+AGG | + | chr3_1:67838266-67838285 | None:intergenic | 35.0% |
CTCAAATTGCGTAAAATGAG+TGG | - | chr3_1:67838264-67838283 | Msa0370250:intron | 35.0% | |
TGTCTCCAATTGATGTAGAA+CGG | + | chr3_1:67838303-67838322 | None:intergenic | 35.0% | |
AATACTCAAGCAACAGAAAC+TGG | + | chr3_1:67838672-67838691 | None:intergenic | 35.0% | |
!! | TTTGTCAGACTTAGCTCTAA+TGG | + | chr3_1:67838702-67838721 | None:intergenic | 35.0% |
! | TTTTGGTAGATTCGTGAGTT+TGG | - | chr3_1:67838752-67838771 | Msa0370250:intron | 35.0% |
! | TACAGCAGGACATTTAAAGT+CGG | + | chr3_1:67838861-67838880 | None:intergenic | 35.0% |
AATTCATAACATGGTACAGC+AGG | + | chr3_1:67838875-67838894 | None:intergenic | 35.0% | |
GTACCATGTTATGAATTTGC+TGG | - | chr3_1:67838878-67838897 | Msa0370250:intron | 35.0% | |
TCAACTAGACAGAATAATCC+CGG | - | chr3_1:67839010-67839029 | Msa0370250:intron | 35.0% | |
ACTAAGGGGAATAAAAATCC+CGG | + | chr3_1:67839032-67839051 | None:intergenic | 35.0% | |
TGATCCAGCTAAAGAAACAA+AGG | + | chr3_1:67839171-67839190 | None:intergenic | 35.0% | |
GTATTTGTCTTGATCAGGTA+AGG | - | chr3_1:67839269-67839288 | Msa0370250:intron | 35.0% | |
GCTAGCATTTCAAATTTCAC+TGG | - | chr3_1:67839462-67839481 | Msa0370250:intron | 35.0% | |
! | ACATTAGGTGAAGGTGTATT+TGG | + | chr3_1:67839615-67839634 | None:intergenic | 35.0% |
CATGCAACGAAAATTTGGTT+TGG | + | chr3_1:67839804-67839823 | None:intergenic | 35.0% | |
ATAGCTTGGTCCATCTTATT+CGG | + | chr3_1:67839856-67839875 | None:intergenic | 35.0% | |
CGTAAACCCAACAACAGAAA+AGG | + | chr3_1:67835941-67835960 | None:intergenic | 40.0% | |
GTTGTTGGGTTTACGTGTAA+CGG | - | chr3_1:67835946-67835965 | Msa0370250:CDS | 40.0% | |
! | GGAATTTTTGCTTCTCTTGC+TGG | - | chr3_1:67836205-67836224 | Msa0370250:intron | 40.0% |
CAGTCACATACAAACTTTGC+TGG | - | chr3_1:67836802-67836821 | Msa0370250:CDS | 40.0% | |
TTCCTTGACAGAGTGACAAT+TGG | - | chr3_1:67837064-67837083 | Msa0370250:intron | 40.0% | |
!! | CAATTGGCCTGCACTTTTTA+CGG | - | chr3_1:67837080-67837099 | Msa0370250:intron | 40.0% |
! | AGGTTTACCGTAAAAAGTGC+AGG | + | chr3_1:67837090-67837109 | None:intergenic | 40.0% |
GCGTCATACAAATTGCAACA+AGG | + | chr3_1:67837110-67837129 | None:intergenic | 40.0% | |
TTGTATGACGCTTCTGTTGT+TGG | - | chr3_1:67837119-67837138 | Msa0370250:intron | 40.0% | |
CTGCATGCTCTGTGATAATT+TGG | + | chr3_1:67837193-67837212 | None:intergenic | 40.0% | |
TGAACAAAGCGTATAAGGAG+AGG | - | chr3_1:67837292-67837311 | Msa0370250:intron | 40.0% | |
AGTAATTCTCTTAGAAGCGG+AGG | - | chr3_1:67837328-67837347 | Msa0370250:intron | 40.0% | |
CATCAGATTGGACCCATATT+TGG | + | chr3_1:67837453-67837472 | None:intergenic | 40.0% | |
! | GCTTTGTTAGAAAACAGCCT+CGG | - | chr3_1:67837595-67837614 | Msa0370250:intron | 40.0% |
GTTGGAGAAACAAACCATGA+AGG | - | chr3_1:67837638-67837657 | Msa0370250:intron | 40.0% | |
CAAACCATGAAGGCTATGTT+TGG | - | chr3_1:67837648-67837667 | Msa0370250:intron | 40.0% | |
GGTCAAACAATGTGGTTATG+AGG | - | chr3_1:67837684-67837703 | Msa0370250:intron | 40.0% | |
AGGCCCAAATTGTCAAACTA+GGG | + | chr3_1:67837992-67838011 | None:intergenic | 40.0% | |
TAGGCCCAAATTGTCAAACT+AGG | + | chr3_1:67837993-67838012 | None:intergenic | 40.0% | |
ACACACCGTTCTACATCAAT+TGG | - | chr3_1:67838295-67838314 | Msa0370250:intron | 40.0% | |
ACATCAAACCCTCTCCATTT+CGG | - | chr3_1:67838322-67838341 | Msa0370250:intron | 40.0% | |
TCATGAGTAATGAGCCGAAA+TGG | + | chr3_1:67838339-67838358 | None:intergenic | 40.0% | |
TTACTCATGACCTAGCAAGA+TGG | - | chr3_1:67838349-67838368 | Msa0370250:intron | 40.0% | |
TGATGTGTAACCATCTTGCT+AGG | + | chr3_1:67838362-67838381 | None:intergenic | 40.0% | |
GCAAGATGGTTACACATCAA+AGG | - | chr3_1:67838363-67838382 | Msa0370250:intron | 40.0% | |
! | CAAAGGTGCAAATTTCTTGC+TGG | - | chr3_1:67838380-67838399 | Msa0370250:intron | 40.0% |
GGGTTCAAAAATCACAACCT+AGG | + | chr3_1:67838474-67838493 | None:intergenic | 40.0% | |
!! | TCAGACTTAGCTCTAATGGT+GGG | + | chr3_1:67838698-67838717 | None:intergenic | 40.0% |
!! | TATGGATGCACCACTAGTTT+TGG | - | chr3_1:67838735-67838754 | Msa0370250:intron | 40.0% |
CACGAATCTACCAAAACTAG+TGG | + | chr3_1:67838748-67838767 | None:intergenic | 40.0% | |
!! | TGTCTAGTTGAGTTGAAGCA+AGG | + | chr3_1:67839001-67839020 | None:intergenic | 40.0% |
CAACTAGACAGAATAATCCC+GGG | - | chr3_1:67839011-67839030 | Msa0370250:intron | 40.0% | |
CTAAGGGGAATAAAAATCCC+GGG | + | chr3_1:67839031-67839050 | None:intergenic | 40.0% | |
TTGTTAACAGACTGAAGCTG+TGG | - | chr3_1:67839123-67839142 | Msa0370250:intron | 40.0% | |
! | GTGTCCTTTGTTTCTTTAGC+TGG | - | chr3_1:67839164-67839183 | Msa0370250:intron | 40.0% |
TGTTTCTTTAGCTGGATCAG+CGG | - | chr3_1:67839172-67839191 | Msa0370250:intron | 40.0% | |
! | GAGGAAAATCGGTTCTCATT+AGG | + | chr3_1:67839307-67839326 | None:intergenic | 40.0% |
GACATTAGGACATTAGGTGA+AGG | + | chr3_1:67839624-67839643 | None:intergenic | 40.0% | |
CACTGCATGCAACGAAAATT+TGG | + | chr3_1:67839809-67839828 | None:intergenic | 40.0% | |
! | CAAATTTTCGTTGCATGCAG+TGG | - | chr3_1:67839807-67839826 | Msa0370250:CDS | 40.0% |
!! | CATGCAGTGGACTGATTTAT+TGG | - | chr3_1:67839820-67839839 | Msa0370250:CDS | 40.0% |
ACTTCACATCCCGAATAAGA+TGG | - | chr3_1:67839843-67839862 | Msa0370250:CDS | 40.0% | |
TAGCTTGGTCCATCTTATTC+GGG | + | chr3_1:67839855-67839874 | None:intergenic | 40.0% | |
AGATGGACCAAGCTATGATT+TGG | - | chr3_1:67839860-67839879 | Msa0370250:CDS | 40.0% | |
TGAAGCTCCAAATCATAGCT+TGG | + | chr3_1:67839870-67839889 | None:intergenic | 40.0% | |
ACATGCAATATGAACCTACC+CGG | + | chr3_1:67840004-67840023 | None:intergenic | 40.0% | |
CCACGAGAGTGAAATTACAT+TGG | + | chr3_1:67840054-67840073 | None:intergenic | 40.0% | |
CCAATGTAATTTCACTCTCG+TGG | - | chr3_1:67840051-67840070 | Msa0370250:CDS | 40.0% | |
ATGTAATTTCACTCTCGTGG+TGG | - | chr3_1:67840054-67840073 | Msa0370250:CDS | 40.0% | |
! | CGTGGTGGTTTTTACAAAGA+TGG | - | chr3_1:67840069-67840088 | Msa0370250:CDS | 40.0% |
! | GTGTAACGGAGAACCGAAAA+TGG | - | chr3_1:67835960-67835979 | Msa0370250:intron | 45.0% |
GTAGTGAAGAAATGGAACGG+TGG | + | chr3_1:67836085-67836104 | None:intergenic | 45.0% | |
CCAGGAAGGTAGTGAAGAAA+TGG | + | chr3_1:67836093-67836112 | None:intergenic | 45.0% | |
CCATTTCTTCACTACCTTCC+TGG | - | chr3_1:67836090-67836109 | Msa0370250:intron | 45.0% | |
AGATGTGAAACTGACCAGGA+AGG | + | chr3_1:67836107-67836126 | None:intergenic | 45.0% | |
AGAGAGATGTGAAACTGACC+AGG | + | chr3_1:67836111-67836130 | None:intergenic | 45.0% | |
CTCCTTATGATGAAGGAGAG+TGG | - | chr3_1:67836269-67836288 | Msa0370250:intron | 45.0% | |
CTCCACTCTCCTTCATCATA+AGG | + | chr3_1:67836274-67836293 | None:intergenic | 45.0% | |
CTTATGATGAAGGAGAGTGG+AGG | - | chr3_1:67836272-67836291 | Msa0370250:intron | 45.0% | |
ACGACAATCTCTCGCAAGAT+AGG | - | chr3_1:67836405-67836424 | Msa0370250:intron | 45.0% | |
! | GCTTAAGCTCACAAAAGTGC+AGG | - | chr3_1:67836688-67836707 | Msa0370250:intron | 45.0% |
! | AAAAGTGCAGGCAAGCTTTG+TGG | - | chr3_1:67836700-67836719 | Msa0370250:intron | 45.0% |
GTCAAGGAATCGTGTAACCA+AGG | + | chr3_1:67837053-67837072 | None:intergenic | 45.0% | |
!! | GTTGTTGGTGTCAGTGAAGT+TGG | - | chr3_1:67837134-67837153 | Msa0370250:intron | 45.0% |
! | TGGCTTTGCTTGAGAAACAG+CGG | - | chr3_1:67837154-67837173 | Msa0370250:intron | 45.0% |
ACAAAGCGTATAAGGAGAGG+AGG | - | chr3_1:67837295-67837314 | Msa0370250:intron | 45.0% | |
TCTCTTAGAAGCGGAGGATT+TGG | - | chr3_1:67837334-67837353 | Msa0370250:intron | 45.0% | |
TTGGTCAGACCTGCCAAATA+TGG | - | chr3_1:67837437-67837456 | Msa0370250:intron | 45.0% | |
TGGTCAGACCTGCCAAATAT+GGG | - | chr3_1:67837438-67837457 | Msa0370250:intron | 45.0% | |
AGATTGGACCCATATTTGGC+AGG | + | chr3_1:67837449-67837468 | None:intergenic | 45.0% | |
CACGCACATCAAAGCAAAGA+TGG | - | chr3_1:67837540-67837559 | Msa0370250:intron | 45.0% | |
GCACATCAAAGCAAAGATGG+CGG | - | chr3_1:67837543-67837562 | Msa0370250:intron | 45.0% | |
!! | GCAAAGATGGCGGATAGATT+TGG | - | chr3_1:67837553-67837572 | Msa0370250:intron | 45.0% |
GGCGGATAGATTTGGATCAT+TGG | - | chr3_1:67837561-67837580 | Msa0370250:intron | 45.0% | |
AGGTAGAGTAGTAGTGAGAG+AGG | - | chr3_1:67837704-67837723 | Msa0370250:intron | 45.0% | |
! | TCTTTCTTTGAGGAGCTGTG+TGG | - | chr3_1:67837762-67837781 | Msa0370250:intron | 45.0% |
GGGGCTCATGTCCAATAATT+AGG | + | chr3_1:67838012-67838031 | None:intergenic | 45.0% | |
TTCCAGATCATGAGCGTTCT+GGG | + | chr3_1:67838032-67838051 | None:intergenic | 45.0% | |
! | GCTGAGTTGGGAAGTTAGTT+AGG | - | chr3_1:67838115-67838134 | Msa0370250:intron | 45.0% |
! | TCCCTATAACCATGCTGCTT+GGG | + | chr3_1:67838141-67838160 | None:intergenic | 45.0% |
AAGCAGCATGGTTATAGGGA+GGG | - | chr3_1:67838141-67838160 | Msa0370250:intron | 45.0% | |
GTAATGAGCCGAAATGGAGA+GGG | + | chr3_1:67838333-67838352 | None:intergenic | 45.0% | |
AGTAATGAGCCGAAATGGAG+AGG | + | chr3_1:67838334-67838353 | None:intergenic | 45.0% | |
GCAAGTCATGACACAAACCT+AGG | - | chr3_1:67838454-67838473 | Msa0370250:intron | 45.0% | |
!! | GTCAGACTTAGCTCTAATGG+TGG | + | chr3_1:67838699-67838718 | None:intergenic | 45.0% |
ACAAGGGCCAAACCAATAAC+TGG | + | chr3_1:67838942-67838961 | None:intergenic | 45.0% | |
GTTTCTTTAGCTGGATCAGC+GGG | - | chr3_1:67839173-67839192 | Msa0370250:intron | 45.0% | |
ACAAATCTTCCCCATCAGTG+TGG | - | chr3_1:67839219-67839238 | Msa0370250:intron | 45.0% | |
AATTCCAGTCCACACTGATG+GGG | + | chr3_1:67839231-67839250 | None:intergenic | 45.0% | |
CAATTCCAGTCCACACTGAT+GGG | + | chr3_1:67839232-67839251 | None:intergenic | 45.0% | |
TGTCTTGATCAGGTAAGGAC+AGG | - | chr3_1:67839274-67839293 | Msa0370250:intron | 45.0% | |
TTGAACTCAGCAAACCAGAG+AGG | - | chr3_1:67840110-67840129 | Msa0370250:five_prime_UTR | 45.0% | |
!!! | ATTATTTGAAATAAAAATTA+GGG | + | chr3_1:67839496-67839515 | None:intergenic | 5.0% |
! | TTATGGGCGATTTTCGGTCC+TGG | - | chr3_1:67835994-67836013 | Msa0370250:intron | 50.0% |
GTGAAGAAATGGAACGGTGG+TGG | + | chr3_1:67836082-67836101 | None:intergenic | 50.0% | |
GGCCAATTGTCACTCTGTCA+AGG | + | chr3_1:67837069-67837088 | None:intergenic | 50.0% | |
GGCTTTGCTTGAGAAACAGC+GGG | - | chr3_1:67837155-67837174 | Msa0370250:intron | 50.0% | |
TGGCAGGTCTGACCAATTGA+TGG | + | chr3_1:67837433-67837452 | None:intergenic | 50.0% | |
TGATTCATCTCTTGTGGCCG+AGG | + | chr3_1:67837615-67837634 | None:intergenic | 50.0% | |
CAGGCCAAACATAGCCTTCA+TGG | + | chr3_1:67837655-67837674 | None:intergenic | 50.0% | |
CATGAAGGCTATGTTTGGCC+TGG | - | chr3_1:67837653-67837672 | Msa0370250:intron | 50.0% | |
TCCAGATCATGAGCGTTCTG+GGG | + | chr3_1:67838031-67838050 | None:intergenic | 50.0% | |
CTTCCAGATCATGAGCGTTC+TGG | + | chr3_1:67838033-67838052 | None:intergenic | 50.0% | |
!! | AAAAAAAGGTGGGCTGTGGG+TGG | - | chr3_1:67838074-67838093 | Msa0370250:intron | 50.0% |
!! | AAAAAAGGTGGGCTGTGGGT+GGG | - | chr3_1:67838075-67838094 | Msa0370250:intron | 50.0% |
TTAGTTAGGCCCAAGCAGCA+TGG | - | chr3_1:67838129-67838148 | Msa0370250:intron | 50.0% | |
GCCCAAGCAGCATGGTTATA+GGG | - | chr3_1:67838137-67838156 | Msa0370250:intron | 50.0% | |
CTCCCTATAACCATGCTGCT+TGG | + | chr3_1:67838142-67838161 | None:intergenic | 50.0% | |
CAAGCAGCATGGTTATAGGG+AGG | - | chr3_1:67838140-67838159 | Msa0370250:intron | 50.0% | |
AGCAGCATGGTTATAGGGAG+GGG | - | chr3_1:67838142-67838161 | Msa0370250:intron | 50.0% | |
TAGTGGTGAGAGAGGAGGTT+AGG | - | chr3_1:67838167-67838186 | Msa0370250:intron | 50.0% | |
GCAATTCCAGTCCACACTGA+TGG | + | chr3_1:67839233-67839252 | None:intergenic | 50.0% | |
!! | TCAGTGTGGACTGGAATTGC+AGG | - | chr3_1:67839233-67839252 | Msa0370250:intron | 50.0% |
TCCTAACAGTCTTGAGCCAC+CGG | - | chr3_1:67839982-67840001 | Msa0370250:CDS | 50.0% | |
TGCAATATGAACCTACCCGG+TGG | + | chr3_1:67840001-67840020 | None:intergenic | 50.0% | |
TGAGTGCAACGTTTCCTCTC+TGG | + | chr3_1:67840127-67840146 | None:intergenic | 50.0% | |
ACGTTGCACTCACTCGAAGT+TGG | - | chr3_1:67840135-67840154 | Msa0370250:five_prime_UTR | 50.0% | |
!! | AAAAAGGTGGGCTGTGGGTG+GGG | - | chr3_1:67838076-67838095 | Msa0370250:intron | 55.0% |
GGCCCAAGCAGCATGGTTAT+AGG | - | chr3_1:67838136-67838155 | Msa0370250:intron | 55.0% | |
GGTTATAGGGAGGGGAGTAG+TGG | - | chr3_1:67838150-67838169 | Msa0370250:intron | 55.0% | |
TCTTCCCCATCAGTGTGGAC+TGG | - | chr3_1:67839224-67839243 | Msa0370250:intron | 55.0% | |
GGCACATGAGCAGCATAGTC+TGG | + | chr3_1:67839900-67839919 | None:intergenic | 55.0% | |
CCTAACAGTCTTGAGCCACC+GGG | - | chr3_1:67839983-67840002 | Msa0370250:CDS | 55.0% | |
! | ATTTTCGGTCCTGGCGTCGC+CGG | - | chr3_1:67836003-67836022 | Msa0370250:intron | 60.0% |
GTCAAGCCAGATCCACCAGC+CGG | + | chr3_1:67836043-67836062 | None:intergenic | 60.0% | |
GCCCCAGAACGCTCATGATC+TGG | - | chr3_1:67838027-67838046 | Msa0370250:intron | 60.0% | |
!! | AAAAGGTGGGCTGTGGGTGG+GGG | - | chr3_1:67838077-67838096 | Msa0370250:intron | 60.0% |
GAGGGGAGTAGTGGTGAGAG+AGG | - | chr3_1:67838159-67838178 | Msa0370250:intron | 60.0% | |
GGGAGTAGTGGTGAGAGAGG+AGG | - | chr3_1:67838162-67838181 | Msa0370250:intron | 60.0% | |
CCCGGTGGCTCAAGACTGTT+AGG | + | chr3_1:67839986-67840005 | None:intergenic | 60.0% | |
ACAGTCTTGAGCCACCGGGT+AGG | - | chr3_1:67839987-67840006 | Msa0370250:CDS | 60.0% | |
AAAACTGCTCCGGCGACGCC+AGG | + | chr3_1:67836015-67836034 | None:intergenic | 65.0% | |
! | GGCGTCGCCGGAGCAGTTTT+CGG | - | chr3_1:67836015-67836034 | Msa0370250:intron | 65.0% |
!! | GCCGGAGCAGTTTTCGGTGC+CGG | - | chr3_1:67836021-67836040 | Msa0370250:intron | 65.0% |
! | GCCGGCACCGAAAACTGCTC+CGG | + | chr3_1:67836025-67836044 | None:intergenic | 65.0% |
!!! | GAGCAGTTTTCGGTGCCGGC+TGG | - | chr3_1:67836025-67836044 | Msa0370250:intron | 65.0% |
!!! | CAGTTTTCGGTGCCGGCTGG+TGG | - | chr3_1:67836028-67836047 | Msa0370250:intron | 65.0% |
!! | AAAGGTGGGCTGTGGGTGGG+GGG | - | chr3_1:67838078-67838097 | Msa0370250:intron | 65.0% |
GGCTGTGGGTGGGGGGAAAT+TGG | - | chr3_1:67838085-67838104 | Msa0370250:intron | 65.0% | |
!! | TCGGTGCCGGCTGGTGGATC+TGG | - | chr3_1:67836034-67836053 | Msa0370250:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 67835914 | 67840171 | 67835914 | ID=Msa0370250;Name=Msa0370250 |
chr3_1 | mRNA | 67835914 | 67840171 | 67835914 | ID=Msa0370250-mRNA-1;Parent=Msa0370250;Name=Msa0370250-mRNA-1;_AED=0.22;_eAED=0.31;_QI=65|0.66|0.75|1|0.66|0.75|4|0|141 |
chr3_1 | exon | 67835914 | 67835965 | 67835914 | ID=Msa0370250-mRNA-1:exon:14120;Parent=Msa0370250-mRNA-1 |
chr3_1 | exon | 67836800 | 67836952 | 67836800 | ID=Msa0370250-mRNA-1:exon:14119;Parent=Msa0370250-mRNA-1 |
chr3_1 | exon | 67839792 | 67839879 | 67839792 | ID=Msa0370250-mRNA-1:exon:14118;Parent=Msa0370250-mRNA-1 |
chr3_1 | exon | 67839974 | 67840171 | 67839974 | ID=Msa0370250-mRNA-1:exon:14117;Parent=Msa0370250-mRNA-1 |
chr3_1 | five_prime_UTR | 67840107 | 67840171 | 67840107 | ID=Msa0370250-mRNA-1:five_prime_utr;Parent=Msa0370250-mRNA-1 |
chr3_1 | CDS | 67839974 | 67840106 | 67839974 | ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1 |
chr3_1 | CDS | 67839792 | 67839879 | 67839792 | ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1 |
chr3_1 | CDS | 67836800 | 67836952 | 67836800 | ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1 |
chr3_1 | CDS | 67835914 | 67835965 | 67835914 | ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1 |
Gene Sequence |
Protein sequence |