AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0370250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370250 MtrunA17_Chr3g0115201 100.000 125 0 0 1 125 1 125 8.10e-87 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370250 AT1G36980.1 83.200 125 21 0 1 125 1 125 4.66e-74 217
Msa0370250 AT1G36980.2 83.200 125 21 0 1 125 1 125 4.66e-74 217

Find 37 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGGACTTAATCGAATTA+TGG 0.237793 3_1:-67840086 Msa0370250:CDS
GTGTCCTTTGTTTCTTTAGC+TGG 0.292476 3_1:-67836899 Msa0370250:CDS
CCATTTCTTCACTACCTTCC+TGG 0.294772 3_1:-67839973 Msa0370250:intron
TCGGTGCCGGCTGGTGGATC+TGG 0.314660 3_1:-67840029 Msa0370250:CDS
GTGTAACGGAGAACCGAAAA+TGG 0.315182 3_1:-67840103 Msa0370250:exon
AAGATTTGTCAAGTGAATCT+TGG 0.381108 3_1:+67836858 None:intergenic
AATGGACTTAATCGAATTAT+GGG 0.397303 3_1:-67840085 Msa0370250:CDS
TGAGTGCAACGTTTCCTCTC+TGG 0.397706 3_1:+67835939 None:intergenic
CCAGGAAGGTAGTGAAGAAA+TGG 0.405204 3_1:+67839973 None:intergenic
TCAGTGTGGACTGGAATTGC+AGG 0.434993 3_1:-67836830 Msa0370250:CDS
GATTATTCTCCTTATGATGA+AGG 0.437959 3_1:-67839801 Msa0370250:CDS
CTCCACTCTCCTTCATCATA+AGG 0.455800 3_1:+67839792 None:intergenic
AATGTGTATTTGTCTTGATC+AGG 0.469326 3_1:-67836799 Msa0370250:intron
GTTTCTTTAGCTGGATCAGC+GGG 0.479953 3_1:-67836890 Msa0370250:CDS
CAATTCCAGTCCACACTGAT+GGG 0.488024 3_1:+67836834 None:intergenic
AAAACTGCTCCGGCGACGCC+AGG 0.490397 3_1:+67840051 None:intergenic
CGTAAACCCAACAACAGAAA+AGG 0.490546 3_1:+67840125 None:intergenic
GCAATTCCAGTCCACACTGA+TGG 0.522479 3_1:+67836833 None:intergenic
GTGAAGAAATGGAACGGTGG+TGG 0.524494 3_1:+67839984 None:intergenic
GTTGTTGGGTTTACGTGTAA+CGG 0.540400 3_1:-67840117 Msa0370250:five_prime_UTR
TCTCAAAGTAACATCAACAC+TGG 0.549404 3_1:-67840162 None:intergenic
TCTTCCCCATCAGTGTGGAC+TGG 0.560606 3_1:-67836839 Msa0370250:CDS
GCCGGCACCGAAAACTGCTC+CGG 0.565156 3_1:+67840041 None:intergenic
CTCAAAGTAACATCAACACT+GGG 0.581282 3_1:-67840161 None:intergenic
GTCAAGCCAGATCCACCAGC+CGG 0.587300 3_1:+67840023 None:intergenic
ACGTTGCACTCACTCGAAGT+TGG 0.606490 3_1:-67835928 Msa0370250:CDS
CTCCTTATGATGAAGGAGAG+TGG 0.610099 3_1:-67839794 Msa0370250:CDS
TGTTTCTTTAGCTGGATCAG+CGG 0.614958 3_1:-67836891 Msa0370250:CDS
AGATGTGAAACTGACCAGGA+AGG 0.635158 3_1:+67839959 None:intergenic
TGATCCAGCTAAAGAAACAA+AGG 0.642275 3_1:+67836895 None:intergenic
TTGTTAACAGACTGAAGCTG+TGG 0.644695 3_1:-67836940 Msa0370250:intron
ACAAATCTTCCCCATCAGTG+TGG 0.656630 3_1:-67836844 Msa0370250:CDS
AATTCCAGTCCACACTGATG+GGG 0.663062 3_1:+67836835 None:intergenic
AAGGTAGTGAAGAAATGGAA+CGG 0.682128 3_1:+67839978 None:intergenic
CTTATGATGAAGGAGAGTGG+AGG 0.705263 3_1:-67839791 Msa0370250:intron
GTAGTGAAGAAATGGAACGG+TGG 0.714297 3_1:+67839981 None:intergenic
TTGAACTCAGCAAACCAGAG+AGG 0.714330 3_1:-67835953 Msa0370250:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAACATATAAATAAA+AGG + chr3_1:67838593-67838612 None:intergenic 10.0%
!!! TTTATTTATATGTTTTGAAT+TGG - chr3_1:67838593-67838612 Msa0370250:intron 10.0%
!!! TTATTTATATGTTTTGAATT+GGG - chr3_1:67838594-67838613 Msa0370250:intron 10.0%
!! TAAATATTTACTAATATGAT+TGG + chr3_1:67839413-67839432 None:intergenic 10.0%
!!! CATTATTTGAAATAAAAATT+AGG + chr3_1:67839497-67839516 None:intergenic 10.0%
!!! AACTTAATTTTATCTTTTTC+TGG + chr3_1:67836452-67836471 None:intergenic 15.0%
!!! ATTTAGTTGTTTTTAGATAA+AGG - chr3_1:67837736-67837755 Msa0370250:intron 15.0%
!!! TATTTATATGTTTTGAATTG+GGG - chr3_1:67838595-67838614 Msa0370250:intron 15.0%
!!! ATTTTTAATAGTTTTCAACA+CGG + chr3_1:67839374-67839393 None:intergenic 15.0%
!!! ATTTCAAATAATGTTTCTTT+TGG - chr3_1:67839504-67839523 Msa0370250:intron 15.0%
!! AATTTAAAGATTGACATAAA+AGG + chr3_1:67839730-67839749 None:intergenic 15.0%
!!! TTTTATGTCAATCTTTAAAT+TGG - chr3_1:67839729-67839748 Msa0370250:intron 15.0%
!!! TCTTTTAGTTTTAGACTTTT+AGG - chr3_1:67836142-67836161 Msa0370250:intron 20.0%
!!! TCATTTGATTTGTTAATTGT+TGG - chr3_1:67836314-67836333 Msa0370250:intron 20.0%
!!! AACTCTTACAATTTTATGAT+CGG - chr3_1:67837933-67837952 Msa0370250:intron 20.0%
!! CTCAATAAGCAAAAAAAAAA+AGG - chr3_1:67838060-67838079 Msa0370250:intron 20.0%
!! AATAAGCAAAAAAAAAAAGG+TGG - chr3_1:67838063-67838082 Msa0370250:intron 20.0%
!! ATAAGCAAAAAAAAAAAGGT+GGG - chr3_1:67838064-67838083 Msa0370250:intron 20.0%
!! ATTTCTTTAAATTTGTGAGT+GGG + chr3_1:67838494-67838513 None:intergenic 20.0%
!! AATTTCTTTAAATTTGTGAG+TGG + chr3_1:67838495-67838514 None:intergenic 20.0%
!!! ATTTATATGTTTTGAATTGG+GGG - chr3_1:67838596-67838615 Msa0370250:intron 20.0%
!! TAAACTTTCAATTTGACATT+AGG + chr3_1:67839638-67839657 None:intergenic 20.0%
!! TGTCAAATTGAAAGTTTAAA+AGG - chr3_1:67839640-67839659 Msa0370250:intron 20.0%
!! AAAATAATCATCAAACAAGT+AGG + chr3_1:67839777-67839796 None:intergenic 20.0%
!! ACCACATTAAATAAAGAAAA+TGG + chr3_1:67839921-67839940 None:intergenic 20.0%
!! AATTCGATTAAGTCCATTTT+CGG + chr3_1:67835976-67835995 None:intergenic 25.0%
!! AAATGGACTTAATCGAATTA+TGG - chr3_1:67835977-67835996 Msa0370250:intron 25.0%
!! AATGGACTTAATCGAATTAT+GGG - chr3_1:67835978-67835997 Msa0370250:intron 25.0%
! AATCAAATGAGCAATAAAGT+AGG + chr3_1:67836304-67836323 None:intergenic 25.0%
!!! ATGTTGTTTGACTTGAAAAT+CGG - chr3_1:67836357-67836376 Msa0370250:intron 25.0%
! TTGTCGTAACTCATAAATAT+AGG + chr3_1:67836392-67836411 None:intergenic 25.0%
! ATGAAAACAATTTCTGACAT+TGG + chr3_1:67836565-67836584 None:intergenic 25.0%
!!! GCTTATTTTAGTTTATCTAC+TGG + chr3_1:67836623-67836642 None:intergenic 25.0%
! TTCAAAATAGTCACTTCTTA+GGG + chr3_1:67836659-67836678 None:intergenic 25.0%
! ATTCAAAATAGTCACTTCTT+AGG + chr3_1:67836660-67836679 None:intergenic 25.0%
! AAGACTGTTACATAAACAAA+AGG + chr3_1:67837386-67837405 None:intergenic 25.0%
!!! TTTATTTTGGTCAAACAATG+TGG - chr3_1:67837676-67837695 Msa0370250:intron 25.0%
! AAGTCTGACAAATTTACAAT+TGG - chr3_1:67838710-67838729 Msa0370250:intron 25.0%
! ACAAATTTACAATTGGTGTA+TGG - chr3_1:67838717-67838736 Msa0370250:intron 25.0%
! TTGACTATCTCAATTTAAGA+GGG - chr3_1:67838798-67838817 Msa0370250:intron 25.0%
! AAAATAGATTGGAAAATTGC+TGG + chr3_1:67838914-67838933 None:intergenic 25.0%
! AACTGGTCAAAAAAATAGAT+TGG + chr3_1:67838925-67838944 None:intergenic 25.0%
!!! CTATTTTTTTGACCAGTTAT+TGG - chr3_1:67838927-67838946 Msa0370250:intron 25.0%
! CCTAGAAAATAAACATACAA+GGG + chr3_1:67838958-67838977 None:intergenic 25.0%
! ACCTAGAAAATAAACATACA+AGG + chr3_1:67838959-67838978 None:intergenic 25.0%
! TTCCTTCAATGATAAATTCA+AGG + chr3_1:67839351-67839370 None:intergenic 25.0%
! TGGATAACTTGAAATCATTA+TGG - chr3_1:67839524-67839543 Msa0370250:intron 25.0%
!!! CAAGTTTTTGACTTAAATGA+TGG + chr3_1:67839691-67839710 None:intergenic 25.0%
!!! GCCATTTTCTTTATTTAATG+TGG - chr3_1:67839917-67839936 Msa0370250:intron 25.0%
! AGATTACCTTTTCTGTTGTT+GGG - chr3_1:67835932-67835951 Msa0370250:CDS 30.0%
!!! CTTTTGATTGTTGTTTTCGA+AGG - chr3_1:67836184-67836203 Msa0370250:intron 30.0%
GATTATTCTCCTTATGATGA+AGG - chr3_1:67836262-67836281 Msa0370250:intron 30.0%
AAATGAGCAATAAAGTAGGT+AGG + chr3_1:67836300-67836319 None:intergenic 30.0%
CAACATCACAATAATCAACA+AGG + chr3_1:67836343-67836362 None:intergenic 30.0%
!! GTTGTTTTCATAAGCTGTAT+TGG - chr3_1:67836496-67836515 Msa0370250:intron 30.0%
TTCTTAGGGAATGTTTGAAT+TGG + chr3_1:67836645-67836664 None:intergenic 30.0%
TTAAATGAGAATTCTCATGC+AGG + chr3_1:67836735-67836754 None:intergenic 30.0%
AAAGTTTGTATGTGACTGTT+TGG + chr3_1:67836800-67836819 None:intergenic 30.0%
ATCAATGCTTACAAGTTTAC+TGG - chr3_1:67836842-67836861 Msa0370250:CDS 30.0%
GAATTTATTGGCAAATTCTC+TGG + chr3_1:67836878-67836897 None:intergenic 30.0%
GAGATGTCAATGGAATTTAT+TGG + chr3_1:67836890-67836909 None:intergenic 30.0%
ATTGATGCTAGTAAGTCTAT+AGG - chr3_1:67836917-67836936 Msa0370250:CDS 30.0%
!! TAGGCATCATTTTTCTAACT+AGG - chr3_1:67836936-67836955 Msa0370250:intron 30.0%
ATACTGACATGTCAAAGATT+TGG - chr3_1:67836967-67836986 Msa0370250:intron 30.0%
AAAATAATTCACTGAGGTAG+TGG + chr3_1:67837243-67837262 None:intergenic 30.0%
AAGCACAAAATAATTCACTG+AGG + chr3_1:67837249-67837268 None:intergenic 30.0%
TAGAGTAATTCTCTTAGAAG+CGG - chr3_1:67837325-67837344 Msa0370250:intron 30.0%
AACATTTGATTCATCTCTTG+TGG + chr3_1:67837621-67837640 None:intergenic 30.0%
ACAAGAGATGAATCAAATGT+TGG - chr3_1:67837620-67837639 Msa0370250:intron 30.0%
TTGTTTGACCAAAATAAACC+AGG + chr3_1:67837674-67837693 None:intergenic 30.0%
ATAAAGGAAGTCTTTCTTTG+AGG - chr3_1:67837752-67837771 Msa0370250:intron 30.0%
! CGAGTCTTAAATTGTTATTG+TGG - chr3_1:67837803-67837822 Msa0370250:intron 30.0%
! AATTTTATGATCGGAGTCTA+TGG - chr3_1:67837942-67837961 Msa0370250:intron 30.0%
!! GACCAAGAAGTATTTATTTG+AGG - chr3_1:67838205-67838224 Msa0370250:intron 30.0%
CTCCTCAAATAAATACTTCT+TGG + chr3_1:67838210-67838229 None:intergenic 30.0%
AGTATTTATTTGAGGAGTTG+AGG - chr3_1:67838213-67838232 Msa0370250:intron 30.0%
! ACTCATTTTACGCAATTTGA+GGG + chr3_1:67838265-67838284 None:intergenic 30.0%
ACTTGCATGAACAAATTACT+AGG + chr3_1:67838440-67838459 None:intergenic 30.0%
CATGCAAATGATTTAACGAA+AGG + chr3_1:67838546-67838565 None:intergenic 30.0%
CTTTCGTTAAATCATTTGCA+TGG - chr3_1:67838544-67838563 Msa0370250:intron 30.0%
!! GTCAAGTTGATAGATATATG+TGG + chr3_1:67838783-67838802 None:intergenic 30.0%
CTTGACTATCTCAATTTAAG+AGG - chr3_1:67838797-67838816 Msa0370250:intron 30.0%
AAACCAGCAAATTCATAACA+TGG + chr3_1:67838884-67838903 None:intergenic 30.0%
!! TTTTTGACCAGTTATTGGTT+TGG - chr3_1:67838932-67838951 Msa0370250:intron 30.0%
!! CCCTTGTATGTTTATTTTCT+AGG - chr3_1:67838955-67838974 Msa0370250:intron 30.0%
!! TTAAGAAGCTTTGAACTAAG+GGG + chr3_1:67839046-67839065 None:intergenic 30.0%
!! CTTAAGAAGCTTTGAACTAA+GGG + chr3_1:67839047-67839066 None:intergenic 30.0%
!! TCTTAAGAAGCTTTGAACTA+AGG + chr3_1:67839048-67839067 None:intergenic 30.0%
AAAGCTTCTTAAGAATCACA+TGG - chr3_1:67839054-67839073 Msa0370250:intron 30.0%
AGTCTGTTAACAAGAGTAAA+AGG + chr3_1:67839116-67839135 None:intergenic 30.0%
AAGATTTGTCAAGTGAATCT+TGG + chr3_1:67839208-67839227 None:intergenic 30.0%
AATGTGTATTTGTCTTGATC+AGG - chr3_1:67839264-67839283 Msa0370250:intron 30.0%
TAACAACTCAAGAGGAAAAT+CGG + chr3_1:67839318-67839337 None:intergenic 30.0%
!! ATTTTCCTCTTGAGTTGTTA+TGG - chr3_1:67839318-67839337 Msa0370250:intron 30.0%
! TTTTTCCATAACAACTCAAG+AGG + chr3_1:67839326-67839345 None:intergenic 30.0%
TGCCTTGAATTTATCATTGA+AGG - chr3_1:67839346-67839365 Msa0370250:intron 30.0%
CAATTTGACATTAGGACATT+AGG + chr3_1:67839630-67839649 None:intergenic 30.0%
TTAATGTGGTGATAAATAGC+TGG - chr3_1:67839931-67839950 Msa0370250:intron 30.0%
! GAGATTACCTTTTCTGTTGT+TGG - chr3_1:67835931-67835950 Msa0370250:CDS 35.0%
! ATCGAATTATGGGCGATTTT+CGG - chr3_1:67835988-67836007 Msa0370250:intron 35.0%
AAGGTAGTGAAGAAATGGAA+CGG + chr3_1:67836088-67836107 None:intergenic 35.0%
!! GTTTTGTTGTGAGACTGTTT+GGG + chr3_1:67836595-67836614 None:intergenic 35.0%
!!! AGTTTTGTTGTGAGACTGTT+TGG + chr3_1:67836596-67836615 None:intergenic 35.0%
GTGACTGTTTGGCTAATTTA+CGG + chr3_1:67836789-67836808 None:intergenic 35.0%
AATTTGAGGAGAGATGTCAA+TGG + chr3_1:67836900-67836919 None:intergenic 35.0%
GACTTACTAGCATCAATTTG+AGG + chr3_1:67836914-67836933 None:intergenic 35.0%
GAGATAGAGTGATAATTCCT+TGG - chr3_1:67837033-67837052 Msa0370250:intron 35.0%
TCTGTGATAATTTGGTTGTG+TGG + chr3_1:67837185-67837204 None:intergenic 35.0%
! CTTTTACATGATGTAAGCAG+TGG - chr3_1:67837266-67837285 Msa0370250:intron 35.0%
GGAATTGAACAAAGCGTATA+AGG - chr3_1:67837287-67837306 Msa0370250:intron 35.0%
! GTTTTCTCTTGTAAGAGCTT+AGG - chr3_1:67837356-67837375 Msa0370250:intron 35.0%
! ATTGATGGAGCACTCAAAAT+AGG + chr3_1:67837418-67837437 None:intergenic 35.0%
!! ATTTTGAGTGCTCCATCAAT+TGG - chr3_1:67837418-67837437 Msa0370250:intron 35.0%
!! ACATTTTGACAGCATCAGAT+TGG + chr3_1:67837465-67837484 None:intergenic 35.0%
GTACGACTTATCATCAATAG+TGG + chr3_1:67837497-67837516 None:intergenic 35.0%
! ATGTTTGGCCTGGTTTATTT+TGG - chr3_1:67837663-67837682 Msa0370250:intron 35.0%
! AGGGAGTTTTCATAAACTCA+TGG + chr3_1:67837973-67837992 None:intergenic 35.0%
AACTCCCTAGTTTGACAATT+TGG - chr3_1:67837985-67838004 Msa0370250:intron 35.0%
ACTCCCTAGTTTGACAATTT+GGG - chr3_1:67837986-67838005 Msa0370250:intron 35.0%
GACAATTTGGGCCTAATTAT+TGG - chr3_1:67837998-67838017 Msa0370250:intron 35.0%
!! AAAAAAAAAAAGGTGGGCTG+TGG - chr3_1:67838070-67838089 Msa0370250:intron 35.0%
!! AAAAAAAAAAGGTGGGCTGT+GGG - chr3_1:67838071-67838090 Msa0370250:intron 35.0%
AATTGGTTACATTGCTGAGT+TGG - chr3_1:67838102-67838121 Msa0370250:intron 35.0%
ATTGGTTACATTGCTGAGTT+GGG - chr3_1:67838103-67838122 Msa0370250:intron 35.0%
! CACTCATTTTACGCAATTTG+AGG + chr3_1:67838266-67838285 None:intergenic 35.0%
CTCAAATTGCGTAAAATGAG+TGG - chr3_1:67838264-67838283 Msa0370250:intron 35.0%
TGTCTCCAATTGATGTAGAA+CGG + chr3_1:67838303-67838322 None:intergenic 35.0%
AATACTCAAGCAACAGAAAC+TGG + chr3_1:67838672-67838691 None:intergenic 35.0%
!! TTTGTCAGACTTAGCTCTAA+TGG + chr3_1:67838702-67838721 None:intergenic 35.0%
! TTTTGGTAGATTCGTGAGTT+TGG - chr3_1:67838752-67838771 Msa0370250:intron 35.0%
! TACAGCAGGACATTTAAAGT+CGG + chr3_1:67838861-67838880 None:intergenic 35.0%
AATTCATAACATGGTACAGC+AGG + chr3_1:67838875-67838894 None:intergenic 35.0%
GTACCATGTTATGAATTTGC+TGG - chr3_1:67838878-67838897 Msa0370250:intron 35.0%
TCAACTAGACAGAATAATCC+CGG - chr3_1:67839010-67839029 Msa0370250:intron 35.0%
ACTAAGGGGAATAAAAATCC+CGG + chr3_1:67839032-67839051 None:intergenic 35.0%
TGATCCAGCTAAAGAAACAA+AGG + chr3_1:67839171-67839190 None:intergenic 35.0%
GTATTTGTCTTGATCAGGTA+AGG - chr3_1:67839269-67839288 Msa0370250:intron 35.0%
GCTAGCATTTCAAATTTCAC+TGG - chr3_1:67839462-67839481 Msa0370250:intron 35.0%
! ACATTAGGTGAAGGTGTATT+TGG + chr3_1:67839615-67839634 None:intergenic 35.0%
CATGCAACGAAAATTTGGTT+TGG + chr3_1:67839804-67839823 None:intergenic 35.0%
ATAGCTTGGTCCATCTTATT+CGG + chr3_1:67839856-67839875 None:intergenic 35.0%
CGTAAACCCAACAACAGAAA+AGG + chr3_1:67835941-67835960 None:intergenic 40.0%
GTTGTTGGGTTTACGTGTAA+CGG - chr3_1:67835946-67835965 Msa0370250:CDS 40.0%
! GGAATTTTTGCTTCTCTTGC+TGG - chr3_1:67836205-67836224 Msa0370250:intron 40.0%
CAGTCACATACAAACTTTGC+TGG - chr3_1:67836802-67836821 Msa0370250:CDS 40.0%
TTCCTTGACAGAGTGACAAT+TGG - chr3_1:67837064-67837083 Msa0370250:intron 40.0%
!! CAATTGGCCTGCACTTTTTA+CGG - chr3_1:67837080-67837099 Msa0370250:intron 40.0%
! AGGTTTACCGTAAAAAGTGC+AGG + chr3_1:67837090-67837109 None:intergenic 40.0%
GCGTCATACAAATTGCAACA+AGG + chr3_1:67837110-67837129 None:intergenic 40.0%
TTGTATGACGCTTCTGTTGT+TGG - chr3_1:67837119-67837138 Msa0370250:intron 40.0%
CTGCATGCTCTGTGATAATT+TGG + chr3_1:67837193-67837212 None:intergenic 40.0%
TGAACAAAGCGTATAAGGAG+AGG - chr3_1:67837292-67837311 Msa0370250:intron 40.0%
AGTAATTCTCTTAGAAGCGG+AGG - chr3_1:67837328-67837347 Msa0370250:intron 40.0%
CATCAGATTGGACCCATATT+TGG + chr3_1:67837453-67837472 None:intergenic 40.0%
! GCTTTGTTAGAAAACAGCCT+CGG - chr3_1:67837595-67837614 Msa0370250:intron 40.0%
GTTGGAGAAACAAACCATGA+AGG - chr3_1:67837638-67837657 Msa0370250:intron 40.0%
CAAACCATGAAGGCTATGTT+TGG - chr3_1:67837648-67837667 Msa0370250:intron 40.0%
GGTCAAACAATGTGGTTATG+AGG - chr3_1:67837684-67837703 Msa0370250:intron 40.0%
AGGCCCAAATTGTCAAACTA+GGG + chr3_1:67837992-67838011 None:intergenic 40.0%
TAGGCCCAAATTGTCAAACT+AGG + chr3_1:67837993-67838012 None:intergenic 40.0%
ACACACCGTTCTACATCAAT+TGG - chr3_1:67838295-67838314 Msa0370250:intron 40.0%
ACATCAAACCCTCTCCATTT+CGG - chr3_1:67838322-67838341 Msa0370250:intron 40.0%
TCATGAGTAATGAGCCGAAA+TGG + chr3_1:67838339-67838358 None:intergenic 40.0%
TTACTCATGACCTAGCAAGA+TGG - chr3_1:67838349-67838368 Msa0370250:intron 40.0%
TGATGTGTAACCATCTTGCT+AGG + chr3_1:67838362-67838381 None:intergenic 40.0%
GCAAGATGGTTACACATCAA+AGG - chr3_1:67838363-67838382 Msa0370250:intron 40.0%
! CAAAGGTGCAAATTTCTTGC+TGG - chr3_1:67838380-67838399 Msa0370250:intron 40.0%
GGGTTCAAAAATCACAACCT+AGG + chr3_1:67838474-67838493 None:intergenic 40.0%
!! TCAGACTTAGCTCTAATGGT+GGG + chr3_1:67838698-67838717 None:intergenic 40.0%
!! TATGGATGCACCACTAGTTT+TGG - chr3_1:67838735-67838754 Msa0370250:intron 40.0%
CACGAATCTACCAAAACTAG+TGG + chr3_1:67838748-67838767 None:intergenic 40.0%
!! TGTCTAGTTGAGTTGAAGCA+AGG + chr3_1:67839001-67839020 None:intergenic 40.0%
CAACTAGACAGAATAATCCC+GGG - chr3_1:67839011-67839030 Msa0370250:intron 40.0%
CTAAGGGGAATAAAAATCCC+GGG + chr3_1:67839031-67839050 None:intergenic 40.0%
TTGTTAACAGACTGAAGCTG+TGG - chr3_1:67839123-67839142 Msa0370250:intron 40.0%
! GTGTCCTTTGTTTCTTTAGC+TGG - chr3_1:67839164-67839183 Msa0370250:intron 40.0%
TGTTTCTTTAGCTGGATCAG+CGG - chr3_1:67839172-67839191 Msa0370250:intron 40.0%
! GAGGAAAATCGGTTCTCATT+AGG + chr3_1:67839307-67839326 None:intergenic 40.0%
GACATTAGGACATTAGGTGA+AGG + chr3_1:67839624-67839643 None:intergenic 40.0%
CACTGCATGCAACGAAAATT+TGG + chr3_1:67839809-67839828 None:intergenic 40.0%
! CAAATTTTCGTTGCATGCAG+TGG - chr3_1:67839807-67839826 Msa0370250:CDS 40.0%
!! CATGCAGTGGACTGATTTAT+TGG - chr3_1:67839820-67839839 Msa0370250:CDS 40.0%
ACTTCACATCCCGAATAAGA+TGG - chr3_1:67839843-67839862 Msa0370250:CDS 40.0%
TAGCTTGGTCCATCTTATTC+GGG + chr3_1:67839855-67839874 None:intergenic 40.0%
AGATGGACCAAGCTATGATT+TGG - chr3_1:67839860-67839879 Msa0370250:CDS 40.0%
TGAAGCTCCAAATCATAGCT+TGG + chr3_1:67839870-67839889 None:intergenic 40.0%
ACATGCAATATGAACCTACC+CGG + chr3_1:67840004-67840023 None:intergenic 40.0%
CCACGAGAGTGAAATTACAT+TGG + chr3_1:67840054-67840073 None:intergenic 40.0%
CCAATGTAATTTCACTCTCG+TGG - chr3_1:67840051-67840070 Msa0370250:CDS 40.0%
ATGTAATTTCACTCTCGTGG+TGG - chr3_1:67840054-67840073 Msa0370250:CDS 40.0%
! CGTGGTGGTTTTTACAAAGA+TGG - chr3_1:67840069-67840088 Msa0370250:CDS 40.0%
! GTGTAACGGAGAACCGAAAA+TGG - chr3_1:67835960-67835979 Msa0370250:intron 45.0%
GTAGTGAAGAAATGGAACGG+TGG + chr3_1:67836085-67836104 None:intergenic 45.0%
CCAGGAAGGTAGTGAAGAAA+TGG + chr3_1:67836093-67836112 None:intergenic 45.0%
CCATTTCTTCACTACCTTCC+TGG - chr3_1:67836090-67836109 Msa0370250:intron 45.0%
AGATGTGAAACTGACCAGGA+AGG + chr3_1:67836107-67836126 None:intergenic 45.0%
AGAGAGATGTGAAACTGACC+AGG + chr3_1:67836111-67836130 None:intergenic 45.0%
CTCCTTATGATGAAGGAGAG+TGG - chr3_1:67836269-67836288 Msa0370250:intron 45.0%
CTCCACTCTCCTTCATCATA+AGG + chr3_1:67836274-67836293 None:intergenic 45.0%
CTTATGATGAAGGAGAGTGG+AGG - chr3_1:67836272-67836291 Msa0370250:intron 45.0%
ACGACAATCTCTCGCAAGAT+AGG - chr3_1:67836405-67836424 Msa0370250:intron 45.0%
! GCTTAAGCTCACAAAAGTGC+AGG - chr3_1:67836688-67836707 Msa0370250:intron 45.0%
! AAAAGTGCAGGCAAGCTTTG+TGG - chr3_1:67836700-67836719 Msa0370250:intron 45.0%
GTCAAGGAATCGTGTAACCA+AGG + chr3_1:67837053-67837072 None:intergenic 45.0%
!! GTTGTTGGTGTCAGTGAAGT+TGG - chr3_1:67837134-67837153 Msa0370250:intron 45.0%
! TGGCTTTGCTTGAGAAACAG+CGG - chr3_1:67837154-67837173 Msa0370250:intron 45.0%
ACAAAGCGTATAAGGAGAGG+AGG - chr3_1:67837295-67837314 Msa0370250:intron 45.0%
TCTCTTAGAAGCGGAGGATT+TGG - chr3_1:67837334-67837353 Msa0370250:intron 45.0%
TTGGTCAGACCTGCCAAATA+TGG - chr3_1:67837437-67837456 Msa0370250:intron 45.0%
TGGTCAGACCTGCCAAATAT+GGG - chr3_1:67837438-67837457 Msa0370250:intron 45.0%
AGATTGGACCCATATTTGGC+AGG + chr3_1:67837449-67837468 None:intergenic 45.0%
CACGCACATCAAAGCAAAGA+TGG - chr3_1:67837540-67837559 Msa0370250:intron 45.0%
GCACATCAAAGCAAAGATGG+CGG - chr3_1:67837543-67837562 Msa0370250:intron 45.0%
!! GCAAAGATGGCGGATAGATT+TGG - chr3_1:67837553-67837572 Msa0370250:intron 45.0%
GGCGGATAGATTTGGATCAT+TGG - chr3_1:67837561-67837580 Msa0370250:intron 45.0%
AGGTAGAGTAGTAGTGAGAG+AGG - chr3_1:67837704-67837723 Msa0370250:intron 45.0%
! TCTTTCTTTGAGGAGCTGTG+TGG - chr3_1:67837762-67837781 Msa0370250:intron 45.0%
GGGGCTCATGTCCAATAATT+AGG + chr3_1:67838012-67838031 None:intergenic 45.0%
TTCCAGATCATGAGCGTTCT+GGG + chr3_1:67838032-67838051 None:intergenic 45.0%
! GCTGAGTTGGGAAGTTAGTT+AGG - chr3_1:67838115-67838134 Msa0370250:intron 45.0%
! TCCCTATAACCATGCTGCTT+GGG + chr3_1:67838141-67838160 None:intergenic 45.0%
AAGCAGCATGGTTATAGGGA+GGG - chr3_1:67838141-67838160 Msa0370250:intron 45.0%
GTAATGAGCCGAAATGGAGA+GGG + chr3_1:67838333-67838352 None:intergenic 45.0%
AGTAATGAGCCGAAATGGAG+AGG + chr3_1:67838334-67838353 None:intergenic 45.0%
GCAAGTCATGACACAAACCT+AGG - chr3_1:67838454-67838473 Msa0370250:intron 45.0%
!! GTCAGACTTAGCTCTAATGG+TGG + chr3_1:67838699-67838718 None:intergenic 45.0%
ACAAGGGCCAAACCAATAAC+TGG + chr3_1:67838942-67838961 None:intergenic 45.0%
GTTTCTTTAGCTGGATCAGC+GGG - chr3_1:67839173-67839192 Msa0370250:intron 45.0%
ACAAATCTTCCCCATCAGTG+TGG - chr3_1:67839219-67839238 Msa0370250:intron 45.0%
AATTCCAGTCCACACTGATG+GGG + chr3_1:67839231-67839250 None:intergenic 45.0%
CAATTCCAGTCCACACTGAT+GGG + chr3_1:67839232-67839251 None:intergenic 45.0%
TGTCTTGATCAGGTAAGGAC+AGG - chr3_1:67839274-67839293 Msa0370250:intron 45.0%
TTGAACTCAGCAAACCAGAG+AGG - chr3_1:67840110-67840129 Msa0370250:five_prime_UTR 45.0%
!!! ATTATTTGAAATAAAAATTA+GGG + chr3_1:67839496-67839515 None:intergenic 5.0%
! TTATGGGCGATTTTCGGTCC+TGG - chr3_1:67835994-67836013 Msa0370250:intron 50.0%
GTGAAGAAATGGAACGGTGG+TGG + chr3_1:67836082-67836101 None:intergenic 50.0%
GGCCAATTGTCACTCTGTCA+AGG + chr3_1:67837069-67837088 None:intergenic 50.0%
GGCTTTGCTTGAGAAACAGC+GGG - chr3_1:67837155-67837174 Msa0370250:intron 50.0%
TGGCAGGTCTGACCAATTGA+TGG + chr3_1:67837433-67837452 None:intergenic 50.0%
TGATTCATCTCTTGTGGCCG+AGG + chr3_1:67837615-67837634 None:intergenic 50.0%
CAGGCCAAACATAGCCTTCA+TGG + chr3_1:67837655-67837674 None:intergenic 50.0%
CATGAAGGCTATGTTTGGCC+TGG - chr3_1:67837653-67837672 Msa0370250:intron 50.0%
TCCAGATCATGAGCGTTCTG+GGG + chr3_1:67838031-67838050 None:intergenic 50.0%
CTTCCAGATCATGAGCGTTC+TGG + chr3_1:67838033-67838052 None:intergenic 50.0%
!! AAAAAAAGGTGGGCTGTGGG+TGG - chr3_1:67838074-67838093 Msa0370250:intron 50.0%
!! AAAAAAGGTGGGCTGTGGGT+GGG - chr3_1:67838075-67838094 Msa0370250:intron 50.0%
TTAGTTAGGCCCAAGCAGCA+TGG - chr3_1:67838129-67838148 Msa0370250:intron 50.0%
GCCCAAGCAGCATGGTTATA+GGG - chr3_1:67838137-67838156 Msa0370250:intron 50.0%
CTCCCTATAACCATGCTGCT+TGG + chr3_1:67838142-67838161 None:intergenic 50.0%
CAAGCAGCATGGTTATAGGG+AGG - chr3_1:67838140-67838159 Msa0370250:intron 50.0%
AGCAGCATGGTTATAGGGAG+GGG - chr3_1:67838142-67838161 Msa0370250:intron 50.0%
TAGTGGTGAGAGAGGAGGTT+AGG - chr3_1:67838167-67838186 Msa0370250:intron 50.0%
GCAATTCCAGTCCACACTGA+TGG + chr3_1:67839233-67839252 None:intergenic 50.0%
!! TCAGTGTGGACTGGAATTGC+AGG - chr3_1:67839233-67839252 Msa0370250:intron 50.0%
TCCTAACAGTCTTGAGCCAC+CGG - chr3_1:67839982-67840001 Msa0370250:CDS 50.0%
TGCAATATGAACCTACCCGG+TGG + chr3_1:67840001-67840020 None:intergenic 50.0%
TGAGTGCAACGTTTCCTCTC+TGG + chr3_1:67840127-67840146 None:intergenic 50.0%
ACGTTGCACTCACTCGAAGT+TGG - chr3_1:67840135-67840154 Msa0370250:five_prime_UTR 50.0%
!! AAAAAGGTGGGCTGTGGGTG+GGG - chr3_1:67838076-67838095 Msa0370250:intron 55.0%
GGCCCAAGCAGCATGGTTAT+AGG - chr3_1:67838136-67838155 Msa0370250:intron 55.0%
GGTTATAGGGAGGGGAGTAG+TGG - chr3_1:67838150-67838169 Msa0370250:intron 55.0%
TCTTCCCCATCAGTGTGGAC+TGG - chr3_1:67839224-67839243 Msa0370250:intron 55.0%
GGCACATGAGCAGCATAGTC+TGG + chr3_1:67839900-67839919 None:intergenic 55.0%
CCTAACAGTCTTGAGCCACC+GGG - chr3_1:67839983-67840002 Msa0370250:CDS 55.0%
! ATTTTCGGTCCTGGCGTCGC+CGG - chr3_1:67836003-67836022 Msa0370250:intron 60.0%
GTCAAGCCAGATCCACCAGC+CGG + chr3_1:67836043-67836062 None:intergenic 60.0%
GCCCCAGAACGCTCATGATC+TGG - chr3_1:67838027-67838046 Msa0370250:intron 60.0%
!! AAAAGGTGGGCTGTGGGTGG+GGG - chr3_1:67838077-67838096 Msa0370250:intron 60.0%
GAGGGGAGTAGTGGTGAGAG+AGG - chr3_1:67838159-67838178 Msa0370250:intron 60.0%
GGGAGTAGTGGTGAGAGAGG+AGG - chr3_1:67838162-67838181 Msa0370250:intron 60.0%
CCCGGTGGCTCAAGACTGTT+AGG + chr3_1:67839986-67840005 None:intergenic 60.0%
ACAGTCTTGAGCCACCGGGT+AGG - chr3_1:67839987-67840006 Msa0370250:CDS 60.0%
AAAACTGCTCCGGCGACGCC+AGG + chr3_1:67836015-67836034 None:intergenic 65.0%
! GGCGTCGCCGGAGCAGTTTT+CGG - chr3_1:67836015-67836034 Msa0370250:intron 65.0%
!! GCCGGAGCAGTTTTCGGTGC+CGG - chr3_1:67836021-67836040 Msa0370250:intron 65.0%
! GCCGGCACCGAAAACTGCTC+CGG + chr3_1:67836025-67836044 None:intergenic 65.0%
!!! GAGCAGTTTTCGGTGCCGGC+TGG - chr3_1:67836025-67836044 Msa0370250:intron 65.0%
!!! CAGTTTTCGGTGCCGGCTGG+TGG - chr3_1:67836028-67836047 Msa0370250:intron 65.0%
!! AAAGGTGGGCTGTGGGTGGG+GGG - chr3_1:67838078-67838097 Msa0370250:intron 65.0%
GGCTGTGGGTGGGGGGAAAT+TGG - chr3_1:67838085-67838104 Msa0370250:intron 65.0%
!! TCGGTGCCGGCTGGTGGATC+TGG - chr3_1:67836034-67836053 Msa0370250:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 67835914 67840171 67835914 ID=Msa0370250;Name=Msa0370250
chr3_1 mRNA 67835914 67840171 67835914 ID=Msa0370250-mRNA-1;Parent=Msa0370250;Name=Msa0370250-mRNA-1;_AED=0.22;_eAED=0.31;_QI=65|0.66|0.75|1|0.66|0.75|4|0|141
chr3_1 exon 67835914 67835965 67835914 ID=Msa0370250-mRNA-1:exon:14120;Parent=Msa0370250-mRNA-1
chr3_1 exon 67836800 67836952 67836800 ID=Msa0370250-mRNA-1:exon:14119;Parent=Msa0370250-mRNA-1
chr3_1 exon 67839792 67839879 67839792 ID=Msa0370250-mRNA-1:exon:14118;Parent=Msa0370250-mRNA-1
chr3_1 exon 67839974 67840171 67839974 ID=Msa0370250-mRNA-1:exon:14117;Parent=Msa0370250-mRNA-1
chr3_1 five_prime_UTR 67840107 67840171 67840107 ID=Msa0370250-mRNA-1:five_prime_utr;Parent=Msa0370250-mRNA-1
chr3_1 CDS 67839974 67840106 67839974 ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1
chr3_1 CDS 67839792 67839879 67839792 ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1
chr3_1 CDS 67836800 67836952 67836800 ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1
chr3_1 CDS 67835914 67835965 67835914 ID=Msa0370250-mRNA-1:cds;Parent=Msa0370250-mRNA-1
Gene Sequence

>Msa0370250

ATGGACTTAATCGAATTATGGGCGATTTTCGGTCCTGGCGTCGCCGGAGCAGTTTTCGGTGCCGGCTGGTGGATCTGGCTTGACGCTGTCGTATGTAGCTCCACCACCGTTCCATTTCTTCACTACCTTCCTGGAATTTTTGCTTCTCTTGCTGGTTTGATGTTCAACTGCGTTAGAAAAGAAGATATTGATTATTCTCCTTATGATGAAGGAGAGTGGAGACTGAAGCTGTGGCTCTTCATTGCATATGTTGTGTCCTTTGTTTCTTTAGCTGGATCAGCGGGTCTACTGATCCAAGATTCACTTGACAAATCTTCCCCATCAGTGTGGACTGGAATTGCAGGCGTTTTGCAATGTGTATTTGTCTTGATCAGCAAACCAGAGAGGAAACGTTGCACTCACTCGAAGTTGGCAATATCTAAGTAA

Protein sequence

>Msa0370250

MDLIELWAIFGPGVAGAVFGAGWWIWLDAVVCSSTTVPFLHYLPGIFASLAGLMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVVSFVSLAGSAGLLIQDSLDKSSPSVWTGIAGVLQCVFVLISKPERKRCTHSKLAISK*