AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0547160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547160 MtrunA17_Chr4g0028981 97.340 188 2 1 1 188 1 185 1.26e-131 366
Msa0547160 MtrunA17_Chr1g0186591 48.000 150 77 1 38 186 1 150 7.44e-44 143
Msa0547160 MtrunA17_Chr1g0186551 49.007 151 76 1 38 187 1 151 6.07e-43 140
Msa0547160 MtrunA17_Chr4g0009521 44.444 153 82 1 38 187 2 154 1.47e-37 127
Msa0547160 MtrunA17_Chr8g0373951 38.095 147 90 1 38 183 1 147 1.00e-29 107
Msa0547160 MtrunA17_Chr1g0167831 45.113 133 72 1 38 169 1 133 8.51e-26 97.1
Msa0547160 MtrunA17_Chr5g0403141 37.086 151 94 1 38 187 2 152 1.59e-19 80.9
Msa0547160 MtrunA17_Chr4g0034251 36.424 151 95 1 38 187 15 165 4.95e-18 77.4
Msa0547160 MtrunA17_Chr5g0412891 72.093 43 12 0 36 78 26 68 9.98e-15 66.2
Msa0547160 MtrunA17_Chr7g0248311 60.000 45 18 0 34 78 26 70 4.31e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0547160 AT2G28370.1 71.809 188 44 1 1 188 1 179 3.47e-88 256
Msa0547160 AT2G37200.1 62.766 188 61 2 1 188 2 180 4.72e-70 211
Msa0547160 AT2G37200.2 62.766 188 61 2 1 188 31 209 1.07e-69 211
Msa0547160 AT3G23200.1 50.331 151 74 1 38 187 1 151 4.79e-44 144
Msa0547160 AT3G53850.1 45.752 153 80 1 38 187 1 153 8.86e-40 133
Msa0547160 AT3G53850.2 45.752 153 80 1 38 187 1 153 8.86e-40 133
Msa0547160 AT5G02060.1 47.020 151 77 1 38 185 1 151 1.99e-34 119
Msa0547160 AT3G50810.3 39.735 151 90 1 38 187 1 151 2.90e-28 103
Msa0547160 AT3G50810.2 39.735 151 90 1 38 187 1 151 2.90e-28 103
Msa0547160 AT3G50810.1 39.735 151 90 1 38 187 1 151 2.90e-28 103
Msa0547160 AT3G23200.2 47.664 107 55 1 82 187 18 124 3.88e-26 97.4
Msa0547160 AT3G53850.3 40.602 133 74 2 58 187 10 140 2.49e-25 95.9
Msa0547160 AT4G37235.1 35.417 144 87 3 46 187 9 148 1.42e-17 75.9
Msa0547160 AT1G49405.1 32.061 131 89 0 38 168 1 131 8.64e-14 66.2

Find 70 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGATGTTTATGCCATTT+TGG 0.142401 4_1:+39948121 Msa0547160:CDS
AGATATCTGAATTAGGATTT+TGG 0.182472 4_1:+39948744 Msa0547160:three_prime_UTR
TCTTCTTAACTTCTGGTCTT+TGG 0.220309 4_1:+39948529 Msa0547160:CDS
TTCCTTCTGTCACTGCCTTC+TGG 0.281533 4_1:+39943302 Msa0547160:CDS
TCAAACAAGATATCTGAATT+AGG 0.288553 4_1:+39948737 Msa0547160:three_prime_UTR
CGTCATTTCTTCTTAACTTC+TGG 0.294825 4_1:+39948522 Msa0547160:CDS
CTGCTGGCTTGCAGACTTTG+TGG 0.320664 4_1:+39948081 Msa0547160:CDS
CAAAGATCGTCTTACCAAAA+TGG 0.321266 4_1:-39948135 None:intergenic
AACATACCAAGATGAAGAAT+TGG 0.339934 4_1:-39942766 None:intergenic
AGTTTCCTTGTTGCGGCTGC+TGG 0.344483 4_1:+39948065 Msa0547160:intron
TGTGCATTATTCTATTCTAT+TGG 0.349073 4_1:+39948831 Msa0547160:three_prime_UTR
GGCTGCTGCACTATCTGTTA+TGG 0.379001 4_1:+39943264 Msa0547160:CDS
GTAGTTGGAACTTCTTCAAC+TGG 0.379154 4_1:-39943109 None:intergenic
AGTACATGAATCACATCATT+TGG 0.380513 4_1:-39948704 None:intergenic
CTCTCTCCAATTCTTCATCT+TGG 0.392487 4_1:+39942760 Msa0547160:five_prime_UTR
CAAGGCATGCCTGGTACTAT+TGG 0.395458 4_1:+39943205 Msa0547160:CDS
GATCTGTATTAGAAGCAAAA+TGG 0.398927 4_1:-39942736 None:intergenic
TCAGATATCTTGTTTGATCA+AGG 0.402168 4_1:-39948731 None:intergenic
GTTGTTTATAAAGTTTGTTT+TGG 0.403633 4_1:+39948620 Msa0547160:three_prime_UTR
CTTGTCAGTTCATTTACAAT+TGG 0.411892 4_1:+39948170 Msa0547160:CDS
GTTGTGGTTTAATTCACATT+TGG 0.426478 4_1:+39948772 Msa0547160:three_prime_UTR
GTGCTCATTGATAATGATCT+TGG 0.426791 4_1:+39948422 Msa0547160:CDS
ATTATGAATTGAAGTGTCAT+TGG 0.438842 4_1:+39943051 Msa0547160:five_prime_UTR
GCAGCAGCTTGTGCATCAGC+GGG 0.451898 4_1:+39948392 Msa0547160:CDS
TGGTGGTGGAATGATTAAAC+AGG 0.463313 4_1:+39948792 Msa0547160:three_prime_UTR
TGCAGCAGCTTGTGCATCAG+CGG 0.471402 4_1:+39948391 Msa0547160:CDS
TTGTTGGTGTTGTTGAATGT+TGG 0.483962 4_1:-39942680 None:intergenic
GGCATGCCTGGTACTATTGG+TGG 0.484167 4_1:+39943208 Msa0547160:CDS
GTATATATATTGAAGTGAAC+GGG 0.489712 4_1:-39948854 None:intergenic
GTGGTTTAATTCACATTTGG+TGG 0.493013 4_1:+39948775 Msa0547160:three_prime_UTR
ACTGCGAAACACGCAGAGAA+AGG 0.497789 4_1:-39943231 None:intergenic
CACCAACAACTGCACTCTGC+AGG 0.499536 4_1:+39942694 Msa0547160:five_prime_UTR
ACTACTGATGGTGGTGGTGG+TGG 0.514097 4_1:+39943127 Msa0547160:CDS
CAGGCATGGCATTCATATGC+TGG 0.517979 4_1:+39948486 Msa0547160:CDS
GTTCATTTACAATTGGCGAT+GGG 0.519096 4_1:+39948177 Msa0547160:CDS
TGCCTGCAGAGTGCAGTTGT+TGG 0.519412 4_1:-39942696 None:intergenic
TGTTTGAAGTTTGTTAAGCT+TGG 0.520797 4_1:+39948660 Msa0547160:three_prime_UTR
GTTTAATTCACATTTGGTGG+TGG 0.522418 4_1:+39948778 Msa0547160:three_prime_UTR
GTTCAGTTTGAAACGGCTAC+AGG 0.524200 4_1:+39948467 Msa0547160:CDS
CCACCACCACCATCAGTAGT+TGG 0.528851 4_1:-39943124 None:intergenic
ACAAAATGTAAATGTTCCTA+TGG 0.529828 4_1:+39943165 Msa0547160:CDS
CCACTGTGTTCAGTTTGAAA+CGG 0.533491 4_1:+39948460 Msa0547160:CDS
TGTTCCTATGGTGAGGATGA+AGG 0.538780 4_1:+39943177 Msa0547160:CDS
CACACATGGCAACAGAAACA+AGG 0.540791 4_1:+39948593 Msa0547160:three_prime_UTR
AAGGATATTCAAGGCATGCC+TGG 0.544386 4_1:+39943196 Msa0547160:CDS
CCAACTACTGATGGTGGTGG+TGG 0.546534 4_1:+39943124 Msa0547160:CDS
AGTTCATTTACAATTGGCGA+TGG 0.548303 4_1:+39948176 Msa0547160:CDS
TTATGAATTGAAGTGTCATT+GGG 0.548603 4_1:+39943052 Msa0547160:five_prime_UTR
AGTATATATATTGAAGTGAA+CGG 0.551809 4_1:-39948855 None:intergenic
GTGAGGATGAAGGATATTCA+AGG 0.554642 4_1:+39943187 Msa0547160:CDS
TTCATTTACAATTGGCGATG+GGG 0.560218 4_1:+39948178 Msa0547160:CDS
GTTTGAAACGGCTACAGGCA+TGG 0.571754 4_1:+39948472 Msa0547160:CDS
TACCAGAAGGCAGTGACAGA+AGG 0.577487 4_1:-39943304 None:intergenic
GCAAGCCAGCAGCCGCAACA+AGG 0.578048 4_1:-39948070 None:intergenic
GAAGAAGTTCCAACTACTGA+TGG 0.579056 4_1:+39943115 Msa0547160:CDS
GAAAGGCCACCAATAGTACC+AGG 0.589357 4_1:-39943214 None:intergenic
ATATCCTTCATCCTCACCAT+AGG 0.600777 4_1:-39943181 None:intergenic
AGTGACAGAAGGAAAATCAC+TGG 0.602419 4_1:-39943293 None:intergenic
CAACTGGGTGAATTGAAGCA+TGG 0.610931 4_1:-39943093 None:intergenic
ACACATGGCTGTCACACACA+TGG 0.614908 4_1:+39948579 Msa0547160:three_prime_UTR
GACAGAAGGAAAATCACTGG+TGG 0.621848 4_1:-39943290 None:intergenic
ACTTCTGGTCTTTGGCATCG+AGG 0.636800 4_1:+39948537 Msa0547160:CDS
CAGAAGTTAAGAAGAAATGA+CGG 0.644975 4_1:-39948521 None:intergenic
TTGTAAATGAACTGACAAGT+CGG 0.646171 4_1:-39948166 None:intergenic
ACACATGGCAACAGAAACAA+GGG 0.658611 4_1:+39948594 Msa0547160:three_prime_UTR
TAGTTGGAACTTCTTCAACT+GGG 0.665313 4_1:-39943108 None:intergenic
ATGTAAATGTTCCTATGGTG+AGG 0.675797 4_1:+39943170 Msa0547160:CDS
GTTCCAACTACTGATGGTGG+TGG 0.688480 4_1:+39943121 Msa0547160:CDS
GAAGTTCCAACTACTGATGG+TGG 0.707650 4_1:+39943118 Msa0547160:CDS
CCGTTTCAAACTGAACACAG+TGG 0.767887 4_1:-39948460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATAAAAATATTAT+TGG - chr4_1:39945558-39945577 None:intergenic 0.0%
!! TTTGATGTATATAAATAAAA+GGG + chr4_1:39942884-39942903 Msa0547160:intron 10.0%
!!! AACTTTATTGTATTTTTTAT+TGG - chr4_1:39942931-39942950 None:intergenic 10.0%
!! TAAAAAAATAGCAAAAAATA+TGG - chr4_1:39947249-39947268 None:intergenic 10.0%
!!! AGTTAAATTGTTTTTTATAT+AGG - chr4_1:39947866-39947885 None:intergenic 10.0%
!! CTTTGATGTATATAAATAAA+AGG + chr4_1:39942883-39942902 Msa0547160:intron 15.0%
!!! TTTTATTACTTTTTAGATCA+TGG + chr4_1:39942956-39942975 Msa0547160:intron 15.0%
!!! TTTATTACTTTTTAGATCAT+GGG + chr4_1:39942957-39942976 Msa0547160:intron 15.0%
!!! TTGTTTATTGTATAAGTTTT+CGG + chr4_1:39943334-39943353 Msa0547160:intron 15.0%
!!! GTTATTTTTATAAGCTATAT+TGG - chr4_1:39943715-39943734 None:intergenic 15.0%
!! AAATAACAGAAAATAACAAA+TGG + chr4_1:39944696-39944715 Msa0547160:intron 15.0%
!! AAATTAAGAACATTGTAAAA+TGG - chr4_1:39945451-39945470 None:intergenic 15.0%
!!! AACAATCTCTAAAATTTTAA+TGG - chr4_1:39945488-39945507 None:intergenic 15.0%
!! AATCTAAAGGTAAAAATAAA+TGG + chr4_1:39946094-39946113 Msa0547160:intron 15.0%
!!! AAATTTTGATGAAAATTGAT+CGG - chr4_1:39946228-39946247 None:intergenic 15.0%
!! GGTTATTGAAATTATTTGAT+GGG + chr4_1:39942978-39942997 Msa0547160:intron 20.0%
!! TTTATTTAAATTACACTGTG+TGG + chr4_1:39943564-39943583 Msa0547160:intron 20.0%
!! TATACACTATTTAGTACAAA+GGG - chr4_1:39943867-39943886 None:intergenic 20.0%
!!! ATTTCTTATTGTATGTTTTC+AGG - chr4_1:39944245-39944264 None:intergenic 20.0%
!! TCTAAGAATAATTGTTCTAA+AGG - chr4_1:39944278-39944297 None:intergenic 20.0%
!! ATTATCATTTACAAAAGTCA+AGG + chr4_1:39944876-39944895 Msa0547160:intron 20.0%
!!! ACAATAGTAGTTTTGATATA+TGG + chr4_1:39945094-39945113 Msa0547160:intron 20.0%
!!! TAGTTTTGATATATGGTTAA+AGG + chr4_1:39945101-39945120 Msa0547160:intron 20.0%
!!! AGTTTTGATATATGGTTAAA+GGG + chr4_1:39945102-39945121 Msa0547160:intron 20.0%
!!! ATTAGAGAGAGATATTTTAT+GGG - chr4_1:39945238-39945257 None:intergenic 20.0%
!!! AATTAGAGAGAGATATTTTA+TGG - chr4_1:39945239-39945258 None:intergenic 20.0%
!!! TGATGAAATCTAAATTTTTC+TGG - chr4_1:39945381-39945400 None:intergenic 20.0%
!!! ATTTATGTTTTTTTGAGTTG+TGG + chr4_1:39945824-39945843 Msa0547160:intron 20.0%
!!! AATGATAATGAGAGAAATAA+TGG + chr4_1:39945952-39945971 Msa0547160:intron 20.0%
!!! ATAAACTTTATTTCTCTCAT+TGG - chr4_1:39946025-39946044 None:intergenic 20.0%
!! AATGAGAGAAATAAAGTTTA+TGG + chr4_1:39946024-39946043 Msa0547160:intron 20.0%
!! CTGTATGAAAACTTAATAAT+GGG + chr4_1:39946387-39946406 Msa0547160:intron 20.0%
!!! GTCATATCTTTTTACTTTTA+TGG + chr4_1:39946420-39946439 Msa0547160:intron 20.0%
!!! TTTTTAGTAGTAGTTCTATT+TGG + chr4_1:39947263-39947282 Msa0547160:intron 20.0%
!! CAAAGTTTCATATTAACTAT+TGG + chr4_1:39947497-39947516 Msa0547160:intron 20.0%
!! TAAGAGCTTATTTGTTTATT+TGG + chr4_1:39947717-39947736 Msa0547160:intron 20.0%
!!! TGCATTATTTCTATAATCAA+TGG - chr4_1:39947894-39947913 None:intergenic 20.0%
!! ATATAATGATCTGTTCAATT+AGG - chr4_1:39947962-39947981 None:intergenic 20.0%
!!! GAACAGATCATTATATATTT+TGG + chr4_1:39947966-39947985 Msa0547160:intron 20.0%
!!! TCTATATAGCATTTTCAAAT+GGG - chr4_1:39948316-39948335 None:intergenic 20.0%
!!! GTTGTTTATAAAGTTTGTTT+TGG + chr4_1:39948620-39948639 Msa0547160:three_prime_UTR 20.0%
!!! ATGTTTCTTTTTCTGCTTTT+TGG + chr4_1:39942784-39942803 Msa0547160:intron 25.0%
!!! TGTTTCTTTTTCTGCTTTTT+GGG + chr4_1:39942785-39942804 Msa0547160:intron 25.0%
! TAATTCATGTACTATAAGCT+AGG + chr4_1:39942823-39942842 Msa0547160:intron 25.0%
! GGGTTATTGAAATTATTTGA+TGG + chr4_1:39942977-39942996 Msa0547160:intron 25.0%
!! ATTATGAATTGAAGTGTCAT+TGG + chr4_1:39943051-39943070 Msa0547160:five_prime_UTR 25.0%
!! TTATGAATTGAAGTGTCATT+GGG + chr4_1:39943052-39943071 Msa0547160:five_prime_UTR 25.0%
! ACAAAATGTAAATGTTCCTA+TGG + chr4_1:39943165-39943184 Msa0547160:CDS 25.0%
!! AATTGTCACCTTTTAGATTA+AGG + chr4_1:39943442-39943461 Msa0547160:intron 25.0%
! TAGACAAAAAATCTCTAACT+CGG - chr4_1:39943473-39943492 None:intergenic 25.0%
!!! AGTTAGAGATTTTTTGTCTA+TGG + chr4_1:39943473-39943492 Msa0547160:intron 25.0%
! AAGCTATATTGGAGAATATA+TGG - chr4_1:39943704-39943723 None:intergenic 25.0%
! GTATACACTATTTAGTACAA+AGG - chr4_1:39943868-39943887 None:intergenic 25.0%
! AATAAAAGAGAGAAATGCAA+TGG + chr4_1:39944028-39944047 Msa0547160:intron 25.0%
! ATAAAAGAGAGAAATGCAAT+GGG + chr4_1:39944029-39944048 Msa0547160:intron 25.0%
!! ATCAGATTTGTTTGTCAATT+GGG + chr4_1:39944098-39944117 Msa0547160:intron 25.0%
! CAAGAAAAGACTAAAAAAGA+TGG + chr4_1:39944315-39944334 Msa0547160:intron 25.0%
!!! TCATTTTTTCAAATTCCTAC+CGG + chr4_1:39944433-39944452 Msa0547160:intron 25.0%
! AATCAATAGTGATGTTCTAA+AGG - chr4_1:39944543-39944562 None:intergenic 25.0%
! AACAGTGATAATATCTTAGA+GGG - chr4_1:39944587-39944606 None:intergenic 25.0%
! AAACAGTGATAATATCTTAG+AGG - chr4_1:39944588-39944607 None:intergenic 25.0%
! TCTCACACTAAAATCTAAAT+AGG + chr4_1:39944942-39944961 Msa0547160:intron 25.0%
! CTCACACTAAAATCTAAATA+GGG + chr4_1:39944943-39944962 Msa0547160:intron 25.0%
! TTATCTAAAGGTGGAAAAAA+TGG - chr4_1:39945170-39945189 None:intergenic 25.0%
! TCATTAATCAAATCTTGTCT+TGG - chr4_1:39945937-39945956 None:intergenic 25.0%
! GAGAGAAATAATGGTTTAAT+TGG + chr4_1:39945961-39945980 Msa0547160:intron 25.0%
! ATAATGGTTTAATTGGAAGT+TGG + chr4_1:39945968-39945987 Msa0547160:intron 25.0%
! TAAAGTTTATGGATCAGATT+TGG + chr4_1:39946035-39946054 Msa0547160:intron 25.0%
! ATGGTTAAATGTTTATCTAC+TGG + chr4_1:39946192-39946211 Msa0547160:intron 25.0%
! TGGTTAAATGTTTATCTACT+GGG + chr4_1:39946193-39946212 Msa0547160:intron 25.0%
!! TTACATATGTTTCTGATACA+TGG + chr4_1:39946323-39946342 Msa0547160:intron 25.0%
!! TGAATTTGAAATTGTTCTAG+AGG + chr4_1:39946349-39946368 Msa0547160:intron 25.0%
! GCTGTATGAAAACTTAATAA+TGG + chr4_1:39946386-39946405 Msa0547160:intron 25.0%
!!! ATGAAAACTTAATAATGGGT+TGG + chr4_1:39946391-39946410 Msa0547160:intron 25.0%
! TACTAATAAAGATGATTTCG+AGG + chr4_1:39946514-39946533 Msa0547160:intron 25.0%
! TATTTCCAGAATAGAAATCT+AGG - chr4_1:39946876-39946895 None:intergenic 25.0%
!! TATTCTGGAAATAAAGTAGT+CGG + chr4_1:39946883-39946902 Msa0547160:intron 25.0%
! TATGAAACTTTGATAGAAAC+TGG - chr4_1:39947489-39947508 None:intergenic 25.0%
! ATTGTTGTAGAGTCTTAAAA+TGG + chr4_1:39947527-39947546 Msa0547160:intron 25.0%
! TTGTTGTAGAGTCTTAAAAT+GGG + chr4_1:39947528-39947547 Msa0547160:intron 25.0%
! ATTTATTTGTAGACAATACC+AGG + chr4_1:39947636-39947655 Msa0547160:intron 25.0%
! AAACTCAATAAAACACTTAC+AGG - chr4_1:39947761-39947780 None:intergenic 25.0%
!!! TATTTTGGCTTTATCTTTGT+TGG + chr4_1:39947981-39948000 Msa0547160:intron 25.0%
! TAGTCTTTCGTAAATATAAG+AGG - chr4_1:39948011-39948030 None:intergenic 25.0%
!! ACAATATTAATGAGTCTTGT+TGG - chr4_1:39948212-39948231 None:intergenic 25.0%
!! CTCTATATAGCATTTTCAAA+TGG - chr4_1:39948317-39948336 None:intergenic 25.0%
!!! ATAAAGTTTGTTTTGGTATC+AGG + chr4_1:39948627-39948646 Msa0547160:three_prime_UTR 25.0%
! TCAAACAAGATATCTGAATT+AGG + chr4_1:39948737-39948756 Msa0547160:three_prime_UTR 25.0%
!! AGATATCTGAATTAGGATTT+TGG + chr4_1:39948744-39948763 Msa0547160:three_prime_UTR 25.0%
! TGTGCATTATTCTATTCTAT+TGG + chr4_1:39948831-39948850 Msa0547160:three_prime_UTR 25.0%
GATCTGTATTAGAAGCAAAA+TGG - chr4_1:39942739-39942758 None:intergenic 30.0%
AACATACCAAGATGAAGAAT+TGG - chr4_1:39942769-39942788 None:intergenic 30.0%
!!! TGATGGGTTTTGATTAGATT+TGG + chr4_1:39942994-39943013 Msa0547160:intron 30.0%
AAGAAGAAGAAGAAGAAAGT+TGG + chr4_1:39943019-39943038 Msa0547160:five_prime_UTR 30.0%
AGAAGAAGAAGAAGAAAGTT+GGG + chr4_1:39943020-39943039 Msa0547160:five_prime_UTR 30.0%
AAACAAAACGAATTACCAGA+AGG - chr4_1:39943320-39943339 None:intergenic 30.0%
!!! CGGTTTTTTGTTGTTTTTGT+TGG + chr4_1:39943354-39943373 Msa0547160:intron 30.0%
GACAATTTAGCTAAATCCAA+TGG - chr4_1:39943429-39943448 None:intergenic 30.0%
ATAAGCTGTTTAATCCAAAC+AGG + chr4_1:39943841-39943860 Msa0547160:intron 30.0%
AAAGGGAAGAGAGATAAAAT+AGG + chr4_1:39943992-39944011 Msa0547160:intron 30.0%
! GATCAGATTTGTTTGTCAAT+TGG + chr4_1:39944097-39944116 Msa0547160:intron 30.0%
ATATCAGTGTCATGTGTATT+TGG + chr4_1:39944175-39944194 Msa0547160:intron 30.0%
TGAACTTCGTTAACAATTTC+TGG - chr4_1:39944352-39944371 None:intergenic 30.0%
! ATTGTAACTAACTAGCTCTT+AGG - chr4_1:39944675-39944694 None:intergenic 30.0%
GATAATTTCACCAAATCCAA+CGG - chr4_1:39944862-39944881 None:intergenic 30.0%
! GTGTTTTCAATAACAGATTG+CGG + chr4_1:39944974-39944993 Msa0547160:intron 30.0%
GGTGCATAATAAGATTTGAT+GGG - chr4_1:39945198-39945217 None:intergenic 30.0%
TGGTGCATAATAAGATTTGA+TGG - chr4_1:39945199-39945218 None:intergenic 30.0%
AGAAGAAGAATAAGTCCAAT+GGG - chr4_1:39945332-39945351 None:intergenic 30.0%
AAGAAGAAGAATAAGTCCAA+TGG - chr4_1:39945333-39945352 None:intergenic 30.0%
!!! GTTTGAAGTTTTTTGATTCC+AGG + chr4_1:39945417-39945436 Msa0547160:intron 30.0%
TGTAAAATGGAATGTAATCC+TGG - chr4_1:39945438-39945457 None:intergenic 30.0%
TCTTAGAAACTCAAGAACAA+TGG - chr4_1:39945516-39945535 None:intergenic 30.0%
ATATGAGAGGAAGAAGAAAA+GGG - chr4_1:39945601-39945620 None:intergenic 30.0%
AATATGAGAGGAAGAAGAAA+AGG - chr4_1:39945602-39945621 None:intergenic 30.0%
CAAAGCAATAGAAATATGAG+AGG - chr4_1:39945614-39945633 None:intergenic 30.0%
ATCTACAAATTGTTGTGTGT+GGG - chr4_1:39945640-39945659 None:intergenic 30.0%
TATCTACAAATTGTTGTGTG+TGG - chr4_1:39945641-39945660 None:intergenic 30.0%
ATAATATATGAGTGACACGA+GGG + chr4_1:39945658-39945677 Msa0547160:intron 30.0%
TAAAGCATGTGGAAAAACAT+TGG + chr4_1:39945690-39945709 Msa0547160:intron 30.0%
AAAGCATGTGGAAAAACATT+GGG + chr4_1:39945691-39945710 Msa0547160:intron 30.0%
! GGAAAAACATTGGGATTTTA+AGG + chr4_1:39945700-39945719 Msa0547160:intron 30.0%
!!! ATGTTTTTTTGAGTTGTGGT+TGG + chr4_1:39945828-39945847 Msa0547160:intron 30.0%
!!! TGAGTTTTTGAGTTATTCGA+TGG + chr4_1:39945867-39945886 Msa0547160:intron 30.0%
TGGTGATTGATCTAATCTAA+AGG + chr4_1:39946081-39946100 Msa0547160:intron 30.0%
AGTTAGACCAATCTAATTGA+TGG + chr4_1:39946121-39946140 Msa0547160:intron 30.0%
! TTAAAATGTTTCTGCCACAT+GGG + chr4_1:39946166-39946185 Msa0547160:intron 30.0%
GGGTATGGTATAAATATTAG+TGG + chr4_1:39946257-39946276 Msa0547160:intron 30.0%
GTATAAATATTAGTGGCATG+TGG + chr4_1:39946264-39946283 Msa0547160:intron 30.0%
TTTATGGTCAGTGAATTCAA+TGG + chr4_1:39946436-39946455 Msa0547160:intron 30.0%
TTATGGTCAGTGAATTCAAT+GGG + chr4_1:39946437-39946456 Msa0547160:intron 30.0%
TTGCTATGTGTATATAGCAA+TGG + chr4_1:39946729-39946748 Msa0547160:intron 30.0%
TGCTATGTGTATATAGCAAT+GGG + chr4_1:39946730-39946749 Msa0547160:intron 30.0%
AGAGTCTTTCAAATATCTCT+GGG + chr4_1:39946800-39946819 Msa0547160:intron 30.0%
GGATTTCCATTTGTAATTTC+TGG + chr4_1:39946821-39946840 Msa0547160:intron 30.0%
TATGGACCAGAAATTACAAA+TGG - chr4_1:39946830-39946849 None:intergenic 30.0%
! ACCATCTTAGAATTTGAGTT+GGG - chr4_1:39947015-39947034 None:intergenic 30.0%
AACCATCTTAGAATTTGAGT+TGG - chr4_1:39947016-39947035 None:intergenic 30.0%
TGTCATATCTCATCCAATAT+GGG - chr4_1:39947142-39947161 None:intergenic 30.0%
ATGTCATATCTCATCCAATA+TGG - chr4_1:39947143-39947162 None:intergenic 30.0%
!!! ATATGGCCAGAATTTTAGTT+AGG - chr4_1:39947232-39947251 None:intergenic 30.0%
! CAACAATACCAAATGCTTTT+AGG - chr4_1:39947587-39947606 None:intergenic 30.0%
AAGCATTTGGTATTGTTGTA+TGG + chr4_1:39947589-39947608 Msa0547160:intron 30.0%
ATTTGGTATTGTTGTATGGA+GGG + chr4_1:39947593-39947612 Msa0547160:intron 30.0%
! TTTTATCAGTTTCCTTGTTG+CGG + chr4_1:39948058-39948077 Msa0547160:intron 30.0%
!! TACTGATGTTTATGCCATTT+TGG + chr4_1:39948121-39948140 Msa0547160:CDS 30.0%
TTGTAAATGAACTGACAAGT+CGG - chr4_1:39948169-39948188 None:intergenic 30.0%
CTTGTCAGTTCATTTACAAT+TGG + chr4_1:39948170-39948189 Msa0547160:CDS 30.0%
ACATGTATCTTATTACATGC+AGG + chr4_1:39948349-39948368 Msa0547160:intron 30.0%
CAGAAGTTAAGAAGAAATGA+CGG - chr4_1:39948524-39948543 None:intergenic 30.0%
!! TGTTTGAAGTTTGTTAAGCT+TGG + chr4_1:39948660-39948679 Msa0547160:three_prime_UTR 30.0%
AGTACATGAATCACATCATT+TGG - chr4_1:39948707-39948726 None:intergenic 30.0%
! TCAGATATCTTGTTTGATCA+AGG - chr4_1:39948734-39948753 None:intergenic 30.0%
GTTGTGGTTTAATTCACATT+TGG + chr4_1:39948772-39948791 Msa0547160:three_prime_UTR 30.0%
!! TTGTTGGTGTTGTTGAATGT+TGG - chr4_1:39942683-39942702 None:intergenic 35.0%
TAGTTGGAACTTCTTCAACT+GGG - chr4_1:39943111-39943130 None:intergenic 35.0%
ATGTAAATGTTCCTATGGTG+AGG + chr4_1:39943170-39943189 Msa0547160:CDS 35.0%
!!! TGTTTCGCAGTTTGTTTTTG+CGG + chr4_1:39943243-39943262 Msa0547160:CDS 35.0%
TTGTAAGAATCTTGTGCCAT+TGG + chr4_1:39943410-39943429 Msa0547160:intron 35.0%
CGGAATCTCCTTAATCTAAA+AGG - chr4_1:39943453-39943472 None:intergenic 35.0%
AGAGATTTGTCTCACACTAA+AGG + chr4_1:39943499-39943518 Msa0547160:intron 35.0%
GAGATTTGTCTCACACTAAA+GGG + chr4_1:39943500-39943519 Msa0547160:intron 35.0%
TTGCAGATCGTGGAAAATAA+CGG + chr4_1:39943541-39943560 Msa0547160:intron 35.0%
TCTAATAAGCCAATCCAAAC+AGG - chr4_1:39943613-39943632 None:intergenic 35.0%
TTGGTGAGAGAATTAGGTAA+GGG + chr4_1:39943961-39943980 Msa0547160:intron 35.0%
TAGGTAAGGGAGAAATAGAA+AGG + chr4_1:39943974-39943993 Msa0547160:intron 35.0%
AGGTAAGGGAGAAATAGAAA+GGG + chr4_1:39943975-39943994 Msa0547160:intron 35.0%
AAGTATCTGTCACATGGTTA+TGG + chr4_1:39944147-39944166 Msa0547160:intron 35.0%
! TTCAGGTTTCATCGTTAATC+TGG - chr4_1:39944228-39944247 None:intergenic 35.0%
TTCTTAGCACTCAGTATGAA+AGG + chr4_1:39944628-39944647 Msa0547160:intron 35.0%
! TAACTAACTAGCTCTTAGGA+GGG - chr4_1:39944671-39944690 None:intergenic 35.0%
!! TACGAAGTGTTGTCAAATAG+TGG - chr4_1:39945055-39945074 None:intergenic 35.0%
! CTAAGTTGGACCAATCTAAT+TGG - chr4_1:39945146-39945165 None:intergenic 35.0%
GTGGAAAAAATGGTCTAAGT+TGG - chr4_1:39945160-39945179 None:intergenic 35.0%
! TGATGGGTGATCTTATCTAA+AGG - chr4_1:39945182-39945201 None:intergenic 35.0%
!! TTTATGGGTAGGATTTGTTG+TGG - chr4_1:39945223-39945242 None:intergenic 35.0%
! GAGAGAGATATTTTATGGGT+AGG - chr4_1:39945234-39945253 None:intergenic 35.0%
! AAGAATAAGTCCAATGGGTT+TGG - chr4_1:39945327-39945346 None:intergenic 35.0%
GATAATATATGAGTGACACG+AGG + chr4_1:39945657-39945676 Msa0547160:intron 35.0%
! TTTGAGTTATTCGATGGTGA+TGG + chr4_1:39945873-39945892 Msa0547160:intron 35.0%
!! TTTATGGATCAGATTTGGTG+TGG + chr4_1:39946040-39946059 Msa0547160:intron 35.0%
GTTTGCACCATCAATTAGAT+TGG - chr4_1:39946131-39946150 None:intergenic 35.0%
!! TGGCAGAAACATTTTAACCA+CGG - chr4_1:39946163-39946182 None:intergenic 35.0%
! GTTAAAATGTTTCTGCCACA+TGG + chr4_1:39946165-39946184 Msa0547160:intron 35.0%
CATTTAACCATTTACCCATG+TGG - chr4_1:39946183-39946202 None:intergenic 35.0%
TCATCAAAATTTCTGCGACA+TGG + chr4_1:39946236-39946255 Msa0547160:intron 35.0%
CATCAAAATTTCTGCGACAT+GGG + chr4_1:39946237-39946256 Msa0547160:intron 35.0%
ATATTAGTGGCATGTGGATT+TGG + chr4_1:39946270-39946289 Msa0547160:intron 35.0%
TGCATGTTTATGCATGCTAA+TGG + chr4_1:39946477-39946496 Msa0547160:intron 35.0%
! ATGGATGGCTACATTTTGTA+GGG - chr4_1:39946547-39946566 None:intergenic 35.0%
GCTATGTGTATATAGCAATG+GGG + chr4_1:39946731-39946750 Msa0547160:intron 35.0%
CAGAGATATTTGAAAGACTC+TGG - chr4_1:39946801-39946820 None:intergenic 35.0%
CAGAGTCTTTCAAATATCTC+TGG + chr4_1:39946799-39946818 Msa0547160:intron 35.0%
CCAAAAGTTTGTATGGAGTA+TGG - chr4_1:39946848-39946867 None:intergenic 35.0%
! CCATACTCCATACAAACTTT+TGG + chr4_1:39946845-39946864 Msa0547160:intron 35.0%
TCTAGCCTAGATTTCTATTC+TGG + chr4_1:39946868-39946887 Msa0547160:intron 35.0%
CATGTATCAATCACCTAATG+CGG - chr4_1:39946917-39946936 None:intergenic 35.0%
!! GAAAATTGGCTTGTAGTGTA+AGG - chr4_1:39946977-39946996 None:intergenic 35.0%
! TACACTACAAGCCAATTTTC+TGG + chr4_1:39946977-39946996 Msa0547160:intron 35.0%
! ACACTACAAGCCAATTTTCT+GGG + chr4_1:39946978-39946997 Msa0547160:intron 35.0%
TTAACTCAACCCCAGAAAAT+TGG - chr4_1:39946991-39947010 None:intergenic 35.0%
! ACCCAACTCAAATTCTAAGA+TGG + chr4_1:39947011-39947030 Msa0547160:intron 35.0%
! ACATTTCTCACCTTTTGAAC+TGG + chr4_1:39947186-39947205 Msa0547160:intron 35.0%
!!! ACCTTTTGAACTGGTGTTAT+GGG + chr4_1:39947195-39947214 Msa0547160:intron 35.0%
GTTAGGCCTAACTAAAATTC+TGG + chr4_1:39947223-39947242 Msa0547160:intron 35.0%
! AGTAGTTCTATTTGGTACGA+AGG + chr4_1:39947271-39947290 Msa0547160:intron 35.0%
! GTAGTTCTATTTGGTACGAA+GGG + chr4_1:39947272-39947291 Msa0547160:intron 35.0%
! TAGTTCTATTTGGTACGAAG+GGG + chr4_1:39947273-39947292 Msa0547160:intron 35.0%
!!! GACGGAAGTAAGACTTTTTT+TGG - chr4_1:39947366-39947385 None:intergenic 35.0%
ACCATGATATACGTCAAAGA+CGG - chr4_1:39947384-39947403 None:intergenic 35.0%
! ATACCAAATGCTTTTAGGCA+TGG - chr4_1:39947582-39947601 None:intergenic 35.0%
CATTTGGTATTGTTGTATGG+AGG + chr4_1:39947592-39947611 Msa0547160:intron 35.0%
TTTGGTATTGTTGTATGGAG+GGG + chr4_1:39947594-39947613 Msa0547160:intron 35.0%
!! TAGACAATACCAGGTTTTGA+TGG + chr4_1:39947645-39947664 Msa0547160:intron 35.0%
ATATCAGAACCATCAAAACC+TGG - chr4_1:39947657-39947676 None:intergenic 35.0%
! ATACTAGCCTACACTGTTTA+GGG + chr4_1:39947687-39947706 Msa0547160:intron 35.0%
CAAAGATCGTCTTACCAAAA+TGG - chr4_1:39948138-39948157 None:intergenic 35.0%
AGTTCATTTACAATTGGCGA+TGG + chr4_1:39948176-39948195 Msa0547160:CDS 35.0%
GTTCATTTACAATTGGCGAT+GGG + chr4_1:39948177-39948196 Msa0547160:CDS 35.0%
TTCATTTACAATTGGCGATG+GGG + chr4_1:39948178-39948197 Msa0547160:CDS 35.0%
!! GTGCTCATTGATAATGATCT+TGG + chr4_1:39948422-39948441 Msa0547160:CDS 35.0%
CGTCATTTCTTCTTAACTTC+TGG + chr4_1:39948522-39948541 Msa0547160:CDS 35.0%
! TCTTCTTAACTTCTGGTCTT+TGG + chr4_1:39948529-39948548 Msa0547160:CDS 35.0%
TAAAAACAGTGTCACACACA+TGG + chr4_1:39948564-39948583 Msa0547160:three_prime_UTR 35.0%
!!! TAGGATTTTGGAATGTGTTG+TGG + chr4_1:39948756-39948775 Msa0547160:three_prime_UTR 35.0%
GTGGTTTAATTCACATTTGG+TGG + chr4_1:39948775-39948794 Msa0547160:three_prime_UTR 35.0%
! GTTTAATTCACATTTGGTGG+TGG + chr4_1:39948778-39948797 Msa0547160:three_prime_UTR 35.0%
CTCTCTCCAATTCTTCATCT+TGG + chr4_1:39942760-39942779 Msa0547160:five_prime_UTR 40.0%
GTAGTTGGAACTTCTTCAAC+TGG - chr4_1:39943112-39943131 None:intergenic 40.0%
GAAGAAGTTCCAACTACTGA+TGG + chr4_1:39943115-39943134 Msa0547160:CDS 40.0%
ATATCCTTCATCCTCACCAT+AGG - chr4_1:39943184-39943203 None:intergenic 40.0%
GTGAGGATGAAGGATATTCA+AGG + chr4_1:39943187-39943206 Msa0547160:CDS 40.0%
AGTGACAGAAGGAAAATCAC+TGG - chr4_1:39943296-39943315 None:intergenic 40.0%
ATGTTGTCAATTGCAGATCG+TGG + chr4_1:39943531-39943550 Msa0547160:intron 40.0%
GCTTATTAGAGCATGTCTGT+TGG + chr4_1:39943623-39943642 Msa0547160:intron 40.0%
! ATACGTTTTGTGAGGCTGTA+TGG + chr4_1:39943647-39943666 Msa0547160:intron 40.0%
! TACGTTTTGTGAGGCTGTAT+GGG + chr4_1:39943648-39943667 Msa0547160:intron 40.0%
TTTAGTACAAAGGGCCTGTT+TGG - chr4_1:39943858-39943877 None:intergenic 40.0%
CTTGGTGAGAGAATTAGGTA+AGG + chr4_1:39943960-39943979 Msa0547160:intron 40.0%
! TCATCGAAGTATCTGTCACA+TGG + chr4_1:39944141-39944160 Msa0547160:intron 40.0%
TGTAATCACATGTGTCGTGT+CGG - chr4_1:39944403-39944422 None:intergenic 40.0%
CTTTCAGTCAGATTCTATCC+CGG - chr4_1:39944496-39944515 None:intergenic 40.0%
CTGAGTGCTAAGAATTAGAG+AGG - chr4_1:39944622-39944641 None:intergenic 40.0%
! GTAACTAACTAGCTCTTAGG+AGG - chr4_1:39944672-39944691 None:intergenic 40.0%
!! TTGTCAAATAGTGGCTCTAG+TGG - chr4_1:39945046-39945065 None:intergenic 40.0%
AGTTGGACCAATCTAATTGG+CGG - chr4_1:39945143-39945162 None:intergenic 40.0%
TGGGTGATCTTATCTAAAGG+TGG - chr4_1:39945179-39945198 None:intergenic 40.0%
! TAAGTCCAATGGGTTTGGTT+AGG - chr4_1:39945322-39945341 None:intergenic 40.0%
! GGTTCAAGGTTTAAAGCATG+TGG + chr4_1:39945679-39945698 Msa0547160:intron 40.0%
TCTTAGTTGAAGACCAGCAA+AGG + chr4_1:39945744-39945763 Msa0547160:intron 40.0%
!! AGTTATTCGATGGTGATGGT+TGG + chr4_1:39945877-39945896 Msa0547160:intron 40.0%
GGATAGTGCATAGCAAGATT+TGG + chr4_1:39946061-39946080 Msa0547160:intron 40.0%
!! GGCAGAAACATTTTAACCAC+GGG - chr4_1:39946162-39946181 None:intergenic 40.0%
AAATTTCTGCGACATGGGTA+TGG + chr4_1:39946242-39946261 Msa0547160:intron 40.0%
! CATGGATGGCTACATTTTGT+AGG - chr4_1:39946548-39946567 None:intergenic 40.0%
TAGCCATCCATGTCACTATT+TGG + chr4_1:39946556-39946575 Msa0547160:intron 40.0%
TTTGGCACCAAATAGTGACA+TGG - chr4_1:39946566-39946585 None:intergenic 40.0%
!! GTCACTATTTGGTGCCAAAA+TGG + chr4_1:39946567-39946586 Msa0547160:intron 40.0%
! ACGTTACAACAGCTCCATTT+TGG - chr4_1:39946584-39946603 None:intergenic 40.0%
TATATAGCAATGGGGTGTGA+AGG + chr4_1:39946739-39946758 Msa0547160:intron 40.0%
! AAGGAAAGTGTGTGGAATGT+TGG + chr4_1:39946758-39946777 Msa0547160:intron 40.0%
AAGTGTGTGGAATGTTGGAA+AGG + chr4_1:39946763-39946782 Msa0547160:intron 40.0%
TGGAATGTTGGAAAGGAAGT+AGG + chr4_1:39946770-39946789 Msa0547160:intron 40.0%
GGCTAGACCAAAAGTTTGTA+TGG - chr4_1:39946855-39946874 None:intergenic 40.0%
! CCACTTACGGACATTTTTGT+AGG - chr4_1:39946941-39946960 None:intergenic 40.0%
CCTACAAAAATGTCCGTAAG+TGG + chr4_1:39946938-39946957 Msa0547160:intron 40.0%
! CACTACAAGCCAATTTTCTG+GGG + chr4_1:39946979-39946998 Msa0547160:intron 40.0%
! TAGCCTATCCAAGACTTGTT+AGG + chr4_1:39947039-39947058 Msa0547160:intron 40.0%
TAGCCTAACAAGTCTTGGAT+AGG - chr4_1:39947045-39947064 None:intergenic 40.0%
CAGATGTCCAATCATGTCTT+GGG + chr4_1:39947093-39947112 Msa0547160:intron 40.0%
! GTATGTTGACTGTCCCATAT+TGG + chr4_1:39947126-39947145 Msa0547160:intron 40.0%
!! CACCTTTTGAACTGGTGTTA+TGG + chr4_1:39947194-39947213 Msa0547160:intron 40.0%
!!! CCTTTTGAACTGGTGTTATG+GGG + chr4_1:39947196-39947215 Msa0547160:intron 40.0%
TCCGTCTTTGACGTATATCA+TGG + chr4_1:39947380-39947399 Msa0547160:intron 40.0%
CTTTGACGTATATCATGGTC+AGG + chr4_1:39947385-39947404 Msa0547160:intron 40.0%
CAGTGTAGGCTAGTATGTAT+TGG - chr4_1:39947683-39947702 None:intergenic 40.0%
! CATACTAGCCTACACTGTTT+AGG + chr4_1:39947686-39947705 Msa0547160:intron 40.0%
CAAATCACCCTAAACAGTGT+AGG - chr4_1:39947697-39947716 None:intergenic 40.0%
CACTCTTAAGCTTCATAACG+TGG + chr4_1:39948256-39948275 Msa0547160:intron 40.0%
AAGCTTCATAACGTGGACAT+TGG + chr4_1:39948263-39948282 Msa0547160:intron 40.0%
CCACTGTGTTCAGTTTGAAA+CGG + chr4_1:39948460-39948479 Msa0547160:CDS 40.0%
ACACATGGCAACAGAAACAA+GGG + chr4_1:39948594-39948613 Msa0547160:three_prime_UTR 40.0%
!! TGGTGGTGGAATGATTAAAC+AGG + chr4_1:39948792-39948811 Msa0547160:three_prime_UTR 40.0%
CAACTGGGTGAATTGAAGCA+TGG - chr4_1:39943096-39943115 None:intergenic 45.0%
GAAGTTCCAACTACTGATGG+TGG + chr4_1:39943118-39943137 Msa0547160:CDS 45.0%
TGTTCCTATGGTGAGGATGA+AGG + chr4_1:39943177-39943196 Msa0547160:CDS 45.0%
AAGGATATTCAAGGCATGCC+TGG + chr4_1:39943196-39943215 Msa0547160:CDS 45.0%
GACAGAAGGAAAATCACTGG+TGG - chr4_1:39943293-39943312 None:intergenic 45.0%
CCAATCTTTGACAACGCTCT+GGG + chr4_1:39943587-39943606 Msa0547160:intron 45.0%
! CTGTTGGCATACGTTTTGTG+AGG + chr4_1:39943639-39943658 Msa0547160:intron 45.0%
! CAACGCTTGGTGAGAGAATT+AGG + chr4_1:39943955-39943974 Msa0547160:intron 45.0%
GAGAAATGCAATGGGAGAAG+TGG + chr4_1:39944037-39944056 Msa0547160:intron 45.0%
GAAGTGGTGTGAAGTGATAG+AGG + chr4_1:39944053-39944072 Msa0547160:intron 45.0%
!! ACACCACGCGAGTTTGTTAA+GGG + chr4_1:39944727-39944746 Msa0547160:intron 45.0%
AAACCCTTAACAAACTCGCG+TGG - chr4_1:39944733-39944752 None:intergenic 45.0%
TTGTAAGAAGCTTGTGCCGT+TGG + chr4_1:39944843-39944862 Msa0547160:intron 45.0%
TTGTTTCACGATGCGCTACT+TGG - chr4_1:39945078-39945097 None:intergenic 45.0%
GTTTGCACCGCCAATTAGAT+TGG + chr4_1:39945133-39945152 Msa0547160:intron 45.0%
!! TGGGTAGGATTTGTTGTGGA+TGG - chr4_1:39945219-39945238 None:intergenic 45.0%
TGCTACCTAACCAAACCCAT+TGG + chr4_1:39945314-39945333 Msa0547160:intron 45.0%
GAAGACCAGCAAAGGATGTA+AGG + chr4_1:39945752-39945771 Msa0547160:intron 45.0%
ACCAGCAAAGGATGTAAGGA+AGG + chr4_1:39945756-39945775 Msa0547160:intron 45.0%
TCCTTCCTTACATCCTTTGC+TGG - chr4_1:39945760-39945779 None:intergenic 45.0%
TTGGAAGTTGGAAGAAGACC+AGG + chr4_1:39945980-39945999 Msa0547160:intron 45.0%
TGGAAGTTGGAAGAAGACCA+GGG + chr4_1:39945981-39946000 Msa0547160:intron 45.0%
GTTTCTGCCACATGGGTAAA+TGG + chr4_1:39946173-39946192 Msa0547160:intron 45.0%
GCACCAAATAGTGACATGGA+TGG - chr4_1:39946562-39946581 None:intergenic 45.0%
TGAGGGATGTCTTCCACTTA+CGG - chr4_1:39946954-39946973 None:intergenic 45.0%
! TGGCTTGTAGTGTAAGGTGA+GGG - chr4_1:39946971-39946990 None:intergenic 45.0%
!! TTGGCTTGTAGTGTAAGGTG+AGG - chr4_1:39946972-39946991 None:intergenic 45.0%
CTTGTTAGGCTACCCCTTAT+CGG + chr4_1:39947053-39947072 Msa0547160:intron 45.0%
CCAAGACATGATTGGACATC+TGG - chr4_1:39947095-39947114 None:intergenic 45.0%
CCAGATGTCCAATCATGTCT+TGG + chr4_1:39947092-39947111 Msa0547160:intron 45.0%
CAATCATGTCTTGGGTGCAA+GGG + chr4_1:39947101-39947120 Msa0547160:intron 45.0%
AATCATGTCTTGGGTGCAAG+GGG + chr4_1:39947102-39947121 Msa0547160:intron 45.0%
CCCCATAACACCAGTTCAAA+AGG - chr4_1:39947199-39947218 None:intergenic 45.0%
!! TGGTGTTATGGGGTTCAGTT+AGG + chr4_1:39947206-39947225 Msa0547160:intron 45.0%
CACATTCACGTGTTTCTCGT+GGG - chr4_1:39947301-39947320 None:intergenic 45.0%
ACACATTCACGTGTTTCTCG+TGG - chr4_1:39947302-39947321 None:intergenic 45.0%
!! GTGCCATGCCTAAAAGCATT+TGG + chr4_1:39947576-39947595 Msa0547160:intron 45.0%
CCGTTTCAAACTGAACACAG+TGG - chr4_1:39948463-39948482 None:intergenic 45.0%
! GTTCAGTTTGAAACGGCTAC+AGG + chr4_1:39948467-39948486 Msa0547160:CDS 45.0%
CACACATGGCAACAGAAACA+AGG + chr4_1:39948593-39948612 Msa0547160:three_prime_UTR 45.0%
!! GTTCCAACTACTGATGGTGG+TGG + chr4_1:39943121-39943140 Msa0547160:CDS 50.0%
CAAGGCATGCCTGGTACTAT+TGG + chr4_1:39943205-39943224 Msa0547160:CDS 50.0%
GAAAGGCCACCAATAGTACC+AGG - chr4_1:39943217-39943236 None:intergenic 50.0%
ACTGCGAAACACGCAGAGAA+AGG - chr4_1:39943234-39943253 None:intergenic 50.0%
GGCTGCTGCACTATCTGTTA+TGG + chr4_1:39943264-39943283 Msa0547160:CDS 50.0%
TTCCTTCTGTCACTGCCTTC+TGG + chr4_1:39943302-39943321 Msa0547160:CDS 50.0%
TACCAGAAGGCAGTGACAGA+AGG - chr4_1:39943307-39943326 None:intergenic 50.0%
GCCAATCTTTGACAACGCTC+TGG + chr4_1:39943586-39943605 Msa0547160:intron 50.0%
!! CCCAGAGCGTTGTCAAAGAT+TGG - chr4_1:39943590-39943609 None:intergenic 50.0%
! CACCAAGCGTTGCCAAATAG+CGG - chr4_1:39943947-39943966 None:intergenic 50.0%
TCAGTCAGATTCTATCCCGG+AGG - chr4_1:39944493-39944512 None:intergenic 50.0%
!! CACACCACGCGAGTTTGTTA+AGG + chr4_1:39944726-39944745 Msa0547160:intron 50.0%
! GAAGCTTGTGCCGTTGGATT+TGG + chr4_1:39944849-39944868 Msa0547160:intron 50.0%
ATGAGTGACACGAGGGTTCA+AGG + chr4_1:39945665-39945684 Msa0547160:intron 50.0%
CAATTGTAGTCCTCTCTCCC+TGG - chr4_1:39946001-39946020 None:intergenic 50.0%
GTGCAAACTAAATGCACCCG+TGG + chr4_1:39946143-39946162 Msa0547160:intron 50.0%
AGTGGCATGTGGATTTGGAC+TGG + chr4_1:39946275-39946294 Msa0547160:intron 50.0%
CATGCAGCTCTATCACACTC+AGG - chr4_1:39946463-39946482 None:intergenic 50.0%
CATCTACCTGAGCTGCTGAA+AGG + chr4_1:39946684-39946703 Msa0547160:intron 50.0%
AGGGGTAGCCTAACAAGTCT+TGG - chr4_1:39947050-39947069 None:intergenic 50.0%
!! TGACTGGATTGGCCGATAAG+GGG - chr4_1:39947068-39947087 None:intergenic 50.0%
!! GTGACTGGATTGGCCGATAA+GGG - chr4_1:39947069-39947088 None:intergenic 50.0%
! CATCTGGAACGTGACTGGAT+TGG - chr4_1:39947079-39947098 None:intergenic 50.0%
! TTGGACATCTGGAACGTGAC+TGG - chr4_1:39947084-39947103 None:intergenic 50.0%
CCTTGCACCCAAGACATGAT+TGG - chr4_1:39947103-39947122 None:intergenic 50.0%
CCAATCATGTCTTGGGTGCA+AGG + chr4_1:39947100-39947119 Msa0547160:intron 50.0%
! GTTTGAAACGGCTACAGGCA+TGG + chr4_1:39948472-39948491 Msa0547160:CDS 50.0%
CAGGCATGGCATTCATATGC+TGG + chr4_1:39948486-39948505 Msa0547160:CDS 50.0%
! ACTTCTGGTCTTTGGCATCG+AGG + chr4_1:39948537-39948556 Msa0547160:CDS 50.0%
ACACATGGCTGTCACACACA+TGG + chr4_1:39948579-39948598 Msa0547160:three_prime_UTR 50.0%
CACCAACAACTGCACTCTGC+AGG + chr4_1:39942694-39942713 Msa0547160:five_prime_UTR 55.0%
TGCCTGCAGAGTGCAGTTGT+TGG - chr4_1:39942699-39942718 None:intergenic 55.0%
CCACCACCACCATCAGTAGT+TGG - chr4_1:39943127-39943146 None:intergenic 55.0%
!! CCAACTACTGATGGTGGTGG+TGG + chr4_1:39943124-39943143 Msa0547160:CDS 55.0%
!! ACTACTGATGGTGGTGGTGG+TGG + chr4_1:39943127-39943146 Msa0547160:CDS 55.0%
GGCATGCCTGGTACTATTGG+TGG + chr4_1:39943208-39943227 Msa0547160:CDS 55.0%
GCGTTGCCAAATAGCGGCTA+TGG - chr4_1:39943941-39943960 None:intergenic 55.0%
AGCCGCTATTTGGCAACGCT+TGG + chr4_1:39943942-39943961 Msa0547160:intron 55.0%
!! CATGTGTCGTGTCGGTGCTA+CGG - chr4_1:39944395-39944414 None:intergenic 55.0%
CAGATTCTATCCCGGAGGCA+TGG - chr4_1:39944488-39944507 None:intergenic 55.0%
TGGAAGAAGACCAGGGAGAG+AGG + chr4_1:39945988-39946007 Msa0547160:intron 55.0%
GTGTGTCCTTTCAGCAGCTC+AGG - chr4_1:39946693-39946712 None:intergenic 55.0%
! GGGGTGTGAAGGAAAGTGTG+TGG + chr4_1:39946750-39946769 Msa0547160:intron 55.0%
GTCGGTTGAGAGTCCGCATT+AGG + chr4_1:39946901-39946920 Msa0547160:intron 55.0%
!! CGTGACTGGATTGGCCGATA+AGG - chr4_1:39947070-39947089 None:intergenic 55.0%
AGTTTCCTTGTTGCGGCTGC+TGG + chr4_1:39948065-39948084 Msa0547160:intron 55.0%
!! CTGCTGGCTTGCAGACTTTG+TGG + chr4_1:39948081-39948100 Msa0547160:CDS 55.0%
TGCAGCAGCTTGTGCATCAG+CGG + chr4_1:39948391-39948410 Msa0547160:CDS 55.0%
! GACAACGCTCTGGGCCTGTT+TGG + chr4_1:39943596-39943615 Msa0547160:intron 60.0%
! CGCTCTGGGCCTGTTTGGAT+TGG + chr4_1:39943601-39943620 Msa0547160:intron 60.0%
ATGGCAGCGCTACAGCGTAG+CGG - chr4_1:39943922-39943941 None:intergenic 60.0%
GCGCTGCCATAGCCGCTATT+TGG + chr4_1:39943932-39943951 Msa0547160:intron 60.0%
!! GTGTCGGTGCTACGGAGTGT+AGG - chr4_1:39944387-39944406 None:intergenic 60.0%
! TGACACTGACGCGTCGACAC+CGG - chr4_1:39944455-39944474 None:intergenic 60.0%
CGACGCGTCAGTGTCATCTC+CGG + chr4_1:39944459-39944478 Msa0547160:intron 60.0%
GACGCGTCAGTGTCATCTCC+GGG + chr4_1:39944460-39944479 Msa0547160:intron 60.0%
ACGCGTCAGTGTCATCTCCG+GGG + chr4_1:39944461-39944480 Msa0547160:intron 60.0%
GCAGCAGCTTGTGCATCAGC+GGG + chr4_1:39948392-39948411 Msa0547160:CDS 60.0%
! ACTGACGCGTCGACACCGGT+AGG - chr4_1:39944451-39944470 None:intergenic 65.0%
ATCTCCGGGGTCCATGCCTC+CGG + chr4_1:39944474-39944493 Msa0547160:intron 65.0%
! TATCCCGGAGGCATGGACCC+CGG - chr4_1:39944481-39944500 None:intergenic 65.0%
GCAAGCCAGCAGCCGCAACA+AGG - chr4_1:39948073-39948092 None:intergenic 65.0%
TCTCCGGGGTCCATGCCTCC+GGG + chr4_1:39944475-39944494 Msa0547160:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 39942664 39948873 39942664 ID=Msa0547160;Name=Msa0547160
chr4_1 mRNA 39942664 39948873 39942664 ID=Msa0547160-mRNA-1;Parent=Msa0547160;Name=Msa0547160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=189|1|1|1|0.66|0.5|4|311|188
chr4_1 exon 39942664 39942781 39942664 ID=Msa0547160-mRNA-1:exon:10168;Parent=Msa0547160-mRNA-1
chr4_1 exon 39943011 39943323 39943011 ID=Msa0547160-mRNA-1:exon:10169;Parent=Msa0547160-mRNA-1
chr4_1 exon 39948067 39948199 39948067 ID=Msa0547160-mRNA-1:exon:10170;Parent=Msa0547160-mRNA-1
chr4_1 exon 39948371 39948873 39948371 ID=Msa0547160-mRNA-1:exon:10171;Parent=Msa0547160-mRNA-1
chr4_1 five_prime_UTR 39942664 39942781 39942664 ID=Msa0547160-mRNA-1:five_prime_utr;Parent=Msa0547160-mRNA-1
chr4_1 five_prime_UTR 39943011 39943081 39943011 ID=Msa0547160-mRNA-1:five_prime_utr;Parent=Msa0547160-mRNA-1
chr4_1 CDS 39943082 39943323 39943082 ID=Msa0547160-mRNA-1:cds;Parent=Msa0547160-mRNA-1
chr4_1 CDS 39948067 39948199 39948067 ID=Msa0547160-mRNA-1:cds;Parent=Msa0547160-mRNA-1
chr4_1 CDS 39948371 39948562 39948371 ID=Msa0547160-mRNA-1:cds;Parent=Msa0547160-mRNA-1
chr4_1 three_prime_UTR 39948563 39948873 39948563 ID=Msa0547160-mRNA-1:three_prime_utr;Parent=Msa0547160-mRNA-1
Gene Sequence

>Msa0547160

ATGAACGTTAGCCATGCTTCAATTCACCCAGTTGAAGAAGTTCCAACTACTGATGGTGGTGGTGGTGGTGTTGCTGTTGCTGAACAAAATGTAAATGTTCCTATGGTGAGGATGAAGGATATTCAAGGCATGCCTGGTACTATTGGTGGCCTTTCTCTGCGTGTTTCGCAGTTTGTTTTTGCGGCTGCTGCACTATCTGTTATGGCTTCCACCAGTGATTTTCCTTCTGTCACTGCCTTCTGTTTCCTTGTTGCGGCTGCTGGCTTGCAGACTTTGTGGAGCATTGCATTAGCTATTACTGATGTTTATGCCATTTTGGTAAGACGATCTTTGCAGAACTACCGACTTGTCAGTTCATTTACAATTGGCGATGGGGTGACTTCGACGCTTATATTTGCAGCAGCTTGTGCATCAGCGGGCATAACAGTGCTCATTGATAATGATCTTGGTAATTGCTATGAGAACCACTGTGTTCAGTTTGAAACGGCTACAGGCATGGCATTCATATGCTGGTTCACGACAGTGCCGTCATTTCTTCTTAACTTCTGGTCTTTGGCATCGAGGTAA

Protein sequence

>Msa0547160

MNVSHASIHPVEEVPTTDGGGGGVAVAEQNVNVPMVRMKDIQGMPGTIGGLSLRVSQFVFAAAALSVMASTSDFPSVTAFCFLVAAAGLQTLWSIALAITDVYAILVRRSLQNYRLVSSFTIGDGVTSTLIFAAACASAGITVLIDNDLGNCYENHCVQFETATGMAFICWFTTVPSFLLNFWSLASR*