AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0209500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209500 MtrunA17_Chr2g0306791 99.713 348 1 0 1 348 1 348 0.0 718
Msa0209500 MtrunA17_Chr7g0250671 92.442 172 12 1 167 337 1 172 4.18e-105 306
Msa0209500 MtrunA17_Chr2g0322171 30.841 321 190 8 9 301 3 319 2.82e-38 139
Msa0209500 MtrunA17_Chr1g0185501 25.685 292 203 9 15 297 26 312 2.47e-18 84.3
Msa0209500 MtrunA17_Chr8g0383711 26.087 276 193 8 30 299 29 299 1.23e-16 79.3
Msa0209500 MtrunA17_Chr4g0067151 23.567 314 213 10 4 297 15 321 5.85e-15 74.7
Msa0209500 MtrunA17_Chr7g0253861 26.000 300 160 9 10 296 92 342 6.49e-14 72.0
Msa0209500 MtrunA17_Chr6g0448921 28.042 189 130 6 112 297 27 212 1.48e-13 72.0
Msa0209500 MtrunA17_Chr3g0095501 23.711 291 201 9 21 297 272 555 2.32e-13 71.2
Msa0209500 MtrunA17_Chr3g0144511 25.843 267 174 8 56 299 60 325 9.95e-13 68.6
Msa0209500 MtrunA17_Chr5g0405851 28.571 203 138 5 14 213 251 449 1.72e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0209500 AT3G15610.1 79.710 345 62 1 1 345 1 337 0.0 567
Msa0209500 AT1G52730.1 80.000 345 63 1 1 345 1 339 0.0 564
Msa0209500 AT1G52730.2 80.000 345 63 1 1 345 1 339 0.0 564
Msa0209500 AT1G15470.1 76.807 332 71 1 9 340 4 329 0.0 543
Msa0209500 AT1G52730.3 86.364 264 36 0 1 264 1 264 2.04e-168 470
Msa0209500 AT1G15470.2 83.137 255 43 0 9 263 4 258 1.16e-162 456
Msa0209500 AT2G46290.1 29.448 326 180 8 9 296 30 343 2.35e-39 143
Msa0209500 AT2G46280.2 30.189 318 188 8 9 296 3 316 2.76e-34 129
Msa0209500 AT2G46280.1 30.189 318 188 8 9 296 3 316 2.76e-34 129
Msa0209500 AT2G46280.3 30.488 246 150 7 9 237 3 244 7.01e-22 93.6
Msa0209500 AT3G49660.1 26.441 295 200 8 15 297 23 312 5.08e-21 92.4
Msa0209500 AT4G02730.1 30.078 256 161 12 54 297 36 285 6.15e-17 81.3
Msa0209500 AT4G02730.1 26.165 279 194 10 30 298 54 330 2.08e-15 76.6
Msa0209500 AT5G08560.1 24.765 319 218 11 21 322 276 589 1.91e-14 74.7
Msa0209500 AT5G08560.2 24.765 319 218 11 21 322 276 589 1.91e-14 74.7
Msa0209500 AT5G08560.3 24.765 319 218 11 21 322 276 589 1.91e-14 74.7
Msa0209500 AT5G64730.1 22.993 274 202 7 30 298 29 298 1.38e-13 70.9
Msa0209500 AT2G43770.1 24.503 302 205 12 10 296 47 340 2.67e-13 70.5
Msa0209500 AT2G01330.1 23.167 341 197 12 15 297 187 520 1.74e-12 68.9
Msa0209500 AT1G71840.1 26.718 262 174 11 49 297 58 314 4.39e-12 67.4
Msa0209500 AT3G18130.1 24.068 295 185 9 14 300 61 324 7.09e-12 66.2
Msa0209500 AT1G48630.1 24.407 295 184 9 14 300 61 324 2.75e-11 64.3
Msa0209500 AT5G23430.1 26.984 189 132 6 112 297 27 212 8.21e-11 63.9
Msa0209500 AT5G23430.3 26.984 189 132 6 112 297 27 212 8.66e-11 63.9
Msa0209500 AT5G23430.2 26.984 189 132 6 112 297 27 212 8.66e-11 63.9

Find 153 sgRNAs with CRISPR-Local

Find 498 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCAAAGCTCTGGAAATTT+TGG 0.049365 2_1:+48142597 None:intergenic
AGTGCTGTTGTTGTTCCTTT+AGG 0.148846 2_1:-48142484 Msa0209500:five_prime_UTR
GTGCTGTTGTTGTTCCTTTA+GGG 0.200212 2_1:-48142483 Msa0209500:five_prime_UTR
CTCTTCCTTTCCTTTGGACT+TGG 0.240542 2_1:+48136613 None:intergenic
GTAAAACAATGGCAAGAAAA+AGG 0.249836 2_1:+48136557 None:intergenic
ATGGTTCTACTGTCAAGTTT+TGG 0.261085 2_1:-48137603 Msa0209500:CDS
CCCCGCCTCTTCCTTTCCTT+TGG 0.282864 2_1:+48136607 None:intergenic
GTTCAAATATCATGCTAAAA+TGG 0.284531 2_1:+48136535 None:intergenic
ATTGAGTTCATGTACTGATA+TGG 0.286538 2_1:-48137885 Msa0209500:CDS
GGGGATTTATCCACTTCTTT+AGG 0.292998 2_1:+48137953 None:intergenic
CTCCTCTTACGCTGTAGTTC+TGG 0.299013 2_1:+48142851 None:intergenic
TTTCCAGAGCTTTGAGGGTT+AGG 0.323955 2_1:-48142591 Msa0209500:five_prime_UTR
GGTTTGTGTGCAGCAAAGTT+TGG 0.345909 2_1:-48138728 Msa0209500:intron
AACAAACTTGTTACCAAACT+TGG 0.348142 2_1:+48137426 None:intergenic
ATTAGAACGATAAGATAAAA+TGG 0.353909 2_1:+48142697 None:intergenic
GAGAGGAAGGGCCAGGGCGC+AGG 0.355400 2_1:+48142761 None:intergenic
CACTGTGTCCGGTTCTCTCC+TGG 0.356259 2_1:-48136812 Msa0209500:CDS
AAAGTTTGGGATGCATTAAC+AGG 0.357474 2_1:-48138714 Msa0209500:CDS
TGCTGTTTGGAGTTGTTGTT+TGG 0.358064 2_1:-48141998 Msa0209500:CDS
GAGCTGGGAGAGGAAGGGCC+AGG 0.366606 2_1:+48142754 None:intergenic
TCAGGGAGATTGTGGGATAC+TGG 0.366610 2_1:-48136391 Msa0209500:three_prime_UTR
AAGAAACCATCAGGAGTAAC+AGG 0.368685 2_1:+48142328 None:intergenic
CAAAATTTCCAGAGCTTTGA+GGG 0.370100 2_1:-48142596 Msa0209500:five_prime_UTR
TAGCATGATATTTGAACCTT+GGG 0.370757 2_1:-48136529 Msa0209500:three_prime_UTR
ACAAGAAATGAAATGATTGA+TGG 0.376047 2_1:+48142511 None:intergenic
TTTGGTAACAAGTTTGTTGC+TGG 0.381118 2_1:-48137421 Msa0209500:CDS
GCCGATTCAAATCATAAATT+CGG 0.388321 2_1:+48137987 None:intergenic
GTTTGTGTGCAGCAAAGTTT+GGG 0.396138 2_1:-48138727 Msa0209500:intron
GCTTCGTTAGAGCCCAAGTT+TGG 0.408433 2_1:-48137439 Msa0209500:CDS
AAGGGCATAAAGGTGCTGTT+TGG 0.408519 2_1:-48142011 Msa0209500:CDS
GGAACATTTGAAGGGCATAA+AGG 0.410447 2_1:-48142021 Msa0209500:CDS
AGGATGGAACCATCAGAATA+TGG 0.410704 2_1:-48136763 Msa0209500:CDS
TACAGTCCTGTTACTCCTGA+TGG 0.412838 2_1:-48142334 Msa0209500:CDS
ATGAATTGACGAGCTGGTTA+AGG 0.413167 2_1:-48136442 Msa0209500:three_prime_UTR
AAGGGCCAGGGCGCAGGGAT+TGG 0.419389 2_1:+48142767 None:intergenic
CCAAAATTTCCAGAGCTTTG+AGG 0.419724 2_1:-48142597 Msa0209500:five_prime_UTR
TCCGAATTTATGATTTGAAT+CGG 0.420073 2_1:-48137988 Msa0209500:CDS
ATACTAATCATGTATATTAG+AGG 0.421571 2_1:+48136505 None:intergenic
GATTGGATTGGAACATTTGA+AGG 0.427455 2_1:-48142030 Msa0209500:CDS
TTCCATACGGGCGATGAGAT+TGG 0.430232 2_1:-48137367 Msa0209500:intron
GCGACTTGGTGTCAAGTGTC+TGG 0.437902 2_1:+48137677 None:intergenic
GAGGTTTCGCGCAGGATTGA+GGG 0.446305 2_1:-48136656 Msa0209500:CDS
GACTAGTGCTGAAGTGAGTC+AGG 0.452988 2_1:-48137650 Msa0209500:CDS
TATTCTGATGGTTCCATCCT+CGG 0.456186 2_1:+48136766 None:intergenic
GTCCAGAACTACAGCGTAAG+AGG 0.465860 2_1:-48142853 Msa0209500:five_prime_UTR
TTTACTCAGATTCATTATGT+TGG 0.466142 2_1:+48136317 None:intergenic
GTATAAGAGAGCAGGTCATA+AGG 0.467876 2_1:-48142794 Msa0209500:five_prime_UTR
TTAGCATGATATTTGAACCT+TGG 0.468326 2_1:-48136530 Msa0209500:three_prime_UTR
GCAACACTCCTGACTGAACC+AGG 0.469039 2_1:+48137932 None:intergenic
ACTTCTTTAGGAGGTGCATC+AGG 0.470919 2_1:+48137965 None:intergenic
GAAGGCAAATGCAGAGGAGG+AGG 0.475882 2_1:-48136675 Msa0209500:CDS
GGAATGGAGAGACTGGAGAT+TGG 0.482165 2_1:-48142047 Msa0209500:CDS
AGAGGAAGGGCCAGGGCGCA+GGG 0.482324 2_1:+48142762 None:intergenic
AACACAGAGCTGGGAGAGGA+AGG 0.483612 2_1:+48142748 None:intergenic
GGAGGAGAATCGTATGCATC+AGG 0.485943 2_1:-48136791 Msa0209500:CDS
GGAGGTTTCGCGCAGGATTG+AGG 0.486264 2_1:-48136657 Msa0209500:CDS
CTAATAAGAAAGAAACCATC+AGG 0.486855 2_1:+48142319 None:intergenic
TTGAGTTCATGTACTGATAT+GGG 0.489256 2_1:-48137884 Msa0209500:CDS
TTGGTAACAAGTTTGTTGCT+GGG 0.489658 2_1:-48137420 Msa0209500:CDS
GATGCATACGATTCTCCTCC+AGG 0.490054 2_1:+48136794 None:intergenic
AGCTGGGAGAGGAAGGGCCA+GGG 0.492838 2_1:+48142755 None:intergenic
ATTCTCCTCCAGGAGAGAAC+CGG 0.492972 2_1:+48136804 None:intergenic
ACCAAATGGAACCCTGGAAA+AGG 0.496038 2_1:-48136699 Msa0209500:CDS
TTTAATTTCAGGGAGATTGT+GGG 0.501355 2_1:-48136398 Msa0209500:three_prime_UTR
CCTCCTAACCCTCAAAGCTC+TGG 0.501548 2_1:+48142588 None:intergenic
CTCACTTCAGCACTAGTCAT+AGG 0.502533 2_1:+48137655 None:intergenic
TCAGAGGGTTTATCACCAAA+TGG 0.504610 2_1:-48136713 Msa0209500:CDS
TACATGAACTCAATATAGTC+TGG 0.504684 2_1:+48137894 None:intergenic
CTCAGCGAGATATTCTCTGC+AGG 0.504716 2_1:+48136276 None:intergenic
CCCTGTCTGCCATATTCTGA+TGG 0.507125 2_1:+48136754 None:intergenic
ATGCTGAGGAATGGAGAGAC+TGG 0.507216 2_1:-48142054 Msa0209500:CDS
TATCTCGCTGAGGGTAGGTT+GGG 0.509080 2_1:-48136265 Msa0209500:three_prime_UTR
ACCATCAGAATATGGCAGAC+AGG 0.510525 2_1:-48136755 Msa0209500:CDS
ATGGTCCTGTACACTGTGTC+CGG 0.512630 2_1:-48136823 Msa0209500:CDS
AGGCTATGGGATGTAAGAAC+TGG 0.513301 2_1:-48137709 Msa0209500:CDS
GGGTAGAAGTAACACAGAGC+TGG 0.514465 2_1:+48142738 None:intergenic
TCTGATTCATCATGAGTCAA+TGG 0.518807 2_1:+48136731 None:intergenic
GTTCAGTCAGGAGTGTTGCA+TGG 0.523714 2_1:-48137928 Msa0209500:CDS
GTTGATAATTCACAGGCTAT+GGG 0.524204 2_1:-48137722 Msa0209500:intron
CCAGAGCTTTGAGGGTTAGG+AGG 0.524290 2_1:-48142588 Msa0209500:five_prime_UTR
GTCTCTCCATTCCTCAGCAT+AGG 0.524626 2_1:+48142057 None:intergenic
AATGAAATGATTGATGGAAA+CGG 0.526606 2_1:+48142517 None:intergenic
GATTTATCCACTTCTTTAGG+AGG 0.527221 2_1:+48137956 None:intergenic
GGAGAGACTGGAGATTGGAT+TGG 0.528885 2_1:-48142042 Msa0209500:CDS
CAAGTCCAAAGGAAAGGAAG+AGG 0.530035 2_1:-48136612 Msa0209500:CDS
GCAAACCAATCCCTGCGCCC+TGG 0.535809 2_1:-48142772 Msa0209500:five_prime_UTR
CGCTATATTACAACTGCTGA+TGG 0.538929 2_1:-48137622 Msa0209500:CDS
ATATCTCGCTGAGGGTAGGT+TGG 0.540588 2_1:-48136266 Msa0209500:three_prime_UTR
ATGATTGATGGAAACGGTAA+CGG 0.543040 2_1:+48142523 None:intergenic
TACCAATCTCATCGCCCGTA+TGG 0.543083 2_1:+48137365 None:intergenic
TCCAAAGGAAAGGAAGAGGC+GGG 0.544199 2_1:-48136608 Msa0209500:CDS
CTGTAAAAGAGATCAACAAC+TGG 0.548288 2_1:+48142352 None:intergenic
AAAGAAGTGGATAAATCCCC+TGG 0.551218 2_1:-48137950 Msa0209500:CDS
TCTCTCCATTCCTCAGCATA+GGG 0.553712 2_1:+48142058 None:intergenic
TACTAATCATGTATATTAGA+GGG 0.553998 2_1:+48136506 None:intergenic
GCATGCAACAAAGGACATCA+TGG 0.555607 2_1:-48136842 Msa0209500:CDS
CAAAGGAAAGGAAGAGGCGG+GGG 0.556170 2_1:-48136606 Msa0209500:CDS
CCATCAGAATATGGCAGACA+GGG 0.557804 2_1:-48136754 Msa0209500:CDS
ATAAATCCCCTGGTTCAGTC+AGG 0.558779 2_1:-48137940 Msa0209500:CDS
GAGAACCGGACACAGTGTAC+AGG 0.559046 2_1:+48136818 None:intergenic
GGAGGCCAAGTCCAAAGGAA+AGG 0.561592 2_1:-48136618 Msa0209500:CDS
ACAAACTTGTTACCAAACTT+GGG 0.561688 2_1:+48137427 None:intergenic
GGTAGAAGTAACACAGAGCT+GGG 0.562530 2_1:+48142739 None:intergenic
TAGTCACAGTATAAGAGAGC+AGG 0.563549 2_1:-48142802 Msa0209500:five_prime_UTR
GAGAATATCTCGCTGAGGGT+AGG 0.568177 2_1:-48136270 Msa0209500:three_prime_UTR
GTACTGATATGGGAGGCGTC+AGG 0.570966 2_1:-48137874 Msa0209500:intron
AGCACTAGTCATAGGCGACT+TGG 0.571425 2_1:+48137663 None:intergenic
ACGGTACCTCTTGTTTGTCA+CGG 0.573426 2_1:-48142385 Msa0209500:CDS
ACACAGAGCTGGGAGAGGAA+GGG 0.576011 2_1:+48142749 None:intergenic
AAGTAACACAGAGCTGGGAG+AGG 0.579612 2_1:+48142744 None:intergenic
TGGTAACAAGTTTGTTGCTG+GGG 0.580435 2_1:-48137419 Msa0209500:CDS
TTGATAGTATGAAACCCTAA+AGG 0.582489 2_1:+48142469 None:intergenic
GACTAGTCGGACGGATGAGA+TGG 0.588029 2_1:+48142820 None:intergenic
CATGTATATTAGAGGGCCCA+AGG 0.588640 2_1:+48136513 None:intergenic
TGATGCACCTCCTAAAGAAG+TGG 0.589350 2_1:-48137963 Msa0209500:CDS
CATATAATGAATTGACGAGC+TGG 0.589827 2_1:-48136448 Msa0209500:three_prime_UTR
GGAGAAGGCAAATGCAGAGG+AGG 0.590265 2_1:-48136678 Msa0209500:CDS
GTCCAAAGGAAAGGAAGAGG+CGG 0.595374 2_1:-48136609 Msa0209500:CDS
ATTGGATTGGAACATTTGAA+GGG 0.596088 2_1:-48142029 Msa0209500:CDS
GCTAGCCCTATGCTGAGGAA+TGG 0.596663 2_1:-48142063 Msa0209500:CDS
GGTAACAAGTTTGTTGCTGG+GGG 0.598590 2_1:-48137418 Msa0209500:CDS
GAAGCTGATTCCACATTGCA+AGG 0.600142 2_1:+48137457 None:intergenic
GCAGAGGAGGCCAAGTCCAA+AGG 0.602036 2_1:-48136623 Msa0209500:CDS
TGGAACCCTGGAAAAGGAGA+AGG 0.603332 2_1:-48136693 Msa0209500:CDS
GTGATGGCAGCATGCAACAA+AGG 0.603771 2_1:-48136851 Msa0209500:intron
TATGCATCAGGATCCGAGGA+TGG 0.610567 2_1:-48136779 Msa0209500:CDS
TGCAGAGAATATCTCGCTGA+GGG 0.613151 2_1:-48136274 Msa0209500:three_prime_UTR
ATGCTAAAATGGTAAAACAA+TGG 0.614652 2_1:+48136546 None:intergenic
CAACACTCCTGACTGAACCA+GGG 0.615920 2_1:+48137933 None:intergenic
TTTATCACCAAATGGAACCC+TGG 0.617473 2_1:-48136705 Msa0209500:CDS
ATTGACTCATGATGAATCAG+AGG 0.620794 2_1:-48136729 Msa0209500:CDS
TCTCTTATACTGTGACTAGT+CGG 0.625942 2_1:+48142807 None:intergenic
TTGACTCATGATGAATCAGA+GGG 0.630585 2_1:-48136728 Msa0209500:CDS
CCAAAGGAAAGGAAGAGGCG+GGG 0.631518 2_1:-48136607 Msa0209500:CDS
TTTCTTATTAGCGCAAGCAA+AGG 0.633591 2_1:-48142307 Msa0209500:intron
ATCGTATGCATCAGGATCCG+AGG 0.634906 2_1:-48136783 Msa0209500:CDS
TCAGCGAGATATTCTCTGCA+GGG 0.640286 2_1:+48136277 None:intergenic
TTATACTGTGACTAGTCGGA+CGG 0.641511 2_1:+48142811 None:intergenic
AGTGCTGAAGTGAGTCAGGA+TGG 0.642357 2_1:-48137646 Msa0209500:CDS
CAGAGGAGGAGGTTTCGCGC+AGG 0.644543 2_1:-48136664 Msa0209500:CDS
GAGTGACCGTGACAAACAAG+AGG 0.644753 2_1:+48142379 None:intergenic
AACACTCCTGACTGAACCAG+GGG 0.647227 2_1:+48137934 None:intergenic
CTGCAGAGAATATCTCGCTG+AGG 0.663217 2_1:-48136275 Msa0209500:three_prime_UTR
AAAGGAGAAGGCAAATGCAG+AGG 0.668862 2_1:-48136681 Msa0209500:CDS
CTATGACATGCCTTGCAATG+TGG 0.670893 2_1:-48137467 Msa0209500:CDS
AATCTGAGTAAACAGAAATG+CGG 0.674121 2_1:-48136306 Msa0209500:three_prime_UTR
TGTGTCCGGTTCTCTCCTGG+AGG 0.681279 2_1:-48136809 Msa0209500:CDS
GTTACGAAAAGTAACACAGG+TGG 0.691010 2_1:+48142550 None:intergenic
TTACGAAAAGTAACACAGGT+GGG 0.698511 2_1:+48142551 None:intergenic
TAGATGCTAGCCCTATGCTG+AGG 0.704353 2_1:-48142068 Msa0209500:CDS
AGTTCATGTACTGATATGGG+AGG 0.705266 2_1:-48137881 Msa0209500:CDS
GGTGTTACGAAAAGTAACAC+AGG 0.721694 2_1:+48142547 None:intergenic
ATTGATGGAAACGGTAACGG+CGG 0.741225 2_1:+48142526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAACTCAATTTTTAAAT+TGG - chr2_1:48137584-48137603 Msa0209500:intron 10.0%
!! ATATATATTCTGTTAAAATT+TGG - chr2_1:48141009-48141028 Msa0209500:intron 10.0%
!! ATAAGAACAAATATTATAAA+CGG + chr2_1:48141984-48142003 None:intergenic 10.0%
!! TGTATATATTAAAAAATAGT+TGG + chr2_1:48142145-48142164 None:intergenic 10.0%
!!! TGGACAATTTTATTTTTTTT+TGG + chr2_1:48136279-48136298 None:intergenic 15.0%
!! GGTTAAAAAAAGAAAAAAAT+GGG + chr2_1:48136432-48136451 None:intergenic 15.0%
!! TGGTTAAAAAAAGAAAAAAA+TGG + chr2_1:48136433-48136452 None:intergenic 15.0%
!! ACCTAAAAAAAAAAAAAAGA+GGG + chr2_1:48136479-48136498 None:intergenic 15.0%
!! AACCTAAAAAAAAAAAAAAG+AGG + chr2_1:48136480-48136499 None:intergenic 15.0%
!! AAAGAATAAAATGTTAAATG+GGG + chr2_1:48138521-48138540 None:intergenic 15.0%
!! CAAAGAATAAAATGTTAAAT+GGG + chr2_1:48138522-48138541 None:intergenic 15.0%
!! ACAAAGAATAAAATGTTAAA+TGG + chr2_1:48138523-48138542 None:intergenic 15.0%
!! AAACATTTCTTATAATAACT+GGG - chr2_1:48139698-48139717 Msa0209500:intron 15.0%
!!! TGGTATTTATTTTCTATTTA+CGG + chr2_1:48140628-48140647 None:intergenic 15.0%
!! GTATATATTGATAAATATTG+CGG - chr2_1:48142262-48142281 Msa0209500:intron 15.0%
!!! TTTATGTTTGTTTTAATTTC+AGG - chr2_1:48142738-48142757 Msa0209500:five_prime_UTR 15.0%
!!! TTATGTTTGTTTTAATTTCA+GGG - chr2_1:48142739-48142758 Msa0209500:five_prime_UTR 15.0%
!! ATTAGAACGATAAGATAAAA+TGG + chr2_1:48136453-48136472 None:intergenic 20.0%
!!! ACCCTCTTTTTTTTTTTTTT+AGG - chr2_1:48136475-48136494 Msa0209500:three_prime_UTR 20.0%
!! AATGGAAAAGAAAAAAGTTA+CGG - chr2_1:48136743-48136762 Msa0209500:CDS 20.0%
!!! TAATAGATCTGATCAATTTT+AGG - chr2_1:48136914-48136933 Msa0209500:intron 20.0%
!!! ATTTTTAAATTGGTAAGAGT+TGG - chr2_1:48137594-48137613 Msa0209500:CDS 20.0%
!! TAAAATCCTCATATAGTATT+AGG + chr2_1:48137620-48137639 None:intergenic 20.0%
!!! TATCTCAAAATGTTTCATTT+TGG + chr2_1:48137885-48137904 None:intergenic 20.0%
!!! TACTAGTATTATCTTTGTTT+TGG - chr2_1:48138241-48138260 Msa0209500:intron 20.0%
!!! TAATTTTGTAGAACTGAAAA+GGG + chr2_1:48138316-48138335 None:intergenic 20.0%
!!! TTAATTTTGTAGAACTGAAA+AGG + chr2_1:48138317-48138336 None:intergenic 20.0%
!! TTCAGTTCTACAAAATTAAT+TGG - chr2_1:48138318-48138337 Msa0209500:intron 20.0%
!!! CTAAAAAACAGTAGATTTTA+AGG + chr2_1:48138432-48138451 None:intergenic 20.0%
!!! TTACTAATTTTGTTTCCTTT+TGG - chr2_1:48138563-48138582 Msa0209500:intron 20.0%
!! ACAAAGTGATTTAGATTAAA+TGG + chr2_1:48138640-48138659 None:intergenic 20.0%
!! GAAACATTTCTTATAATAAC+TGG - chr2_1:48139697-48139716 Msa0209500:intron 20.0%
!!! AGTCAATTCAATTTTTTCAA+TGG - chr2_1:48140090-48140109 Msa0209500:intron 20.0%
!!! ATATTTGTTGGTATTCATTT+TGG - chr2_1:48140556-48140575 Msa0209500:intron 20.0%
!!! AATTTTGTGTTTTTGTCATT+AGG + chr2_1:48140598-48140617 None:intergenic 20.0%
!!! GGTATTTATTTTCTATTTAC+GGG + chr2_1:48140627-48140646 None:intergenic 20.0%
!! ATTGATGTTTGTATATATCT+GGG - chr2_1:48141091-48141110 Msa0209500:intron 20.0%
!! AATTCCATATAGGTAATAAT+AGG - chr2_1:48142073-48142092 Msa0209500:intron 20.0%
!!! ACTAAACTGATTTTTAAGTT+TGG - chr2_1:48142223-48142242 Msa0209500:intron 20.0%
!! TACTAATCATGTATATTAGA+GGG + chr2_1:48142644-48142663 None:intergenic 20.0%
!! ATACTAATCATGTATATTAG+AGG + chr2_1:48142645-48142664 None:intergenic 20.0%
!!! TTGTAAGTTTTAGTTTGTAT+TGG - chr2_1:48142675-48142694 Msa0209500:five_prime_UTR 20.0%
! AACAAAAACAAGAAGCAAAT+TGG + chr2_1:48136522-48136541 None:intergenic 25.0%
! AATGAAATGATTGATGGAAA+CGG + chr2_1:48136633-48136652 None:intergenic 25.0%
! ACAAGAAATGAAATGATTGA+TGG + chr2_1:48136639-48136658 None:intergenic 25.0%
!! TTGTGAGATTTTACAAGAAA+TGG - chr2_1:48136725-48136744 Msa0209500:CDS 25.0%
! AATTAAATGTTATCACGTGT+CGG + chr2_1:48137011-48137030 None:intergenic 25.0%
! TTTGTTAATTCAATGTGCAT+AGG - chr2_1:48137334-48137353 Msa0209500:intron 25.0%
!! AAGACAATAAACATTTTCAC+AGG + chr2_1:48137401-48137420 None:intergenic 25.0%
! TTTATTGTCTTATGCTTTAC+CGG - chr2_1:48137410-48137429 Msa0209500:CDS 25.0%
! CACACACATCTAATATAAAT+AGG - chr2_1:48137475-48137494 Msa0209500:CDS 25.0%
!! TGTTTAAATTGGACCTTTTT+GGG + chr2_1:48137509-48137528 None:intergenic 25.0%
!! CTTCTTTTACGTGTTTAAAT+TGG + chr2_1:48137520-48137539 None:intergenic 25.0%
! TAAAAGAAGTTCATAACCAA+TGG - chr2_1:48137531-48137550 Msa0209500:intron 25.0%
! AAACCTATAATGTAATGTGA+TGG + chr2_1:48137833-48137852 None:intergenic 25.0%
!!! GAAGATTTTGGGATTTAAAT+TGG + chr2_1:48137990-48138009 None:intergenic 25.0%
!! ATTGTTAACTCGAAGATTTT+GGG + chr2_1:48138001-48138020 None:intergenic 25.0%
!! AATTGTTAACTCGAAGATTT+TGG + chr2_1:48138002-48138021 None:intergenic 25.0%
! GCATAGTAATACTAGAATAA+GGG + chr2_1:48138214-48138233 None:intergenic 25.0%
! TGCATAGTAATACTAGAATA+AGG + chr2_1:48138215-48138234 None:intergenic 25.0%
!!! AGTATTATCTTTGTTTTGGT+AGG - chr2_1:48138245-48138264 Msa0209500:intron 25.0%
!! AATTTTGTAGAACTGAAAAG+GGG + chr2_1:48138315-48138334 None:intergenic 25.0%
! ACAGAGAATAAAATGTTAAC+TGG + chr2_1:48138460-48138479 None:intergenic 25.0%
! AAATGGGGATTCATATTAAA+TGG + chr2_1:48138506-48138525 None:intergenic 25.0%
! TAAGAGCAGAAAATGTTAAA+TGG + chr2_1:48138611-48138630 None:intergenic 25.0%
! TGAGATTTACAATTCTGATT+GGG + chr2_1:48139026-48139045 None:intergenic 25.0%
! TTACATTATTGACAGAAGAA+AGG - chr2_1:48139391-48139410 Msa0209500:intron 25.0%
! TACATTATTGACAGAAGAAA+GGG - chr2_1:48139392-48139411 Msa0209500:intron 25.0%
! TTAATTGAATGCTGTACTAA+TGG + chr2_1:48139459-48139478 None:intergenic 25.0%
! TTAGTACAGCATTCAATTAA+TGG - chr2_1:48139459-48139478 Msa0209500:intron 25.0%
! ATAAAATGATGATCTTGGTT+AGG - chr2_1:48139499-48139518 Msa0209500:intron 25.0%
! TAAAATGATGATCTTGGTTA+GGG - chr2_1:48139500-48139519 Msa0209500:intron 25.0%
! TTCATGAGTGAATGTAAAAA+AGG - chr2_1:48139838-48139857 Msa0209500:intron 25.0%
! TCATGAGTGAATGTAAAAAA+GGG - chr2_1:48139839-48139858 Msa0209500:intron 25.0%
! AGGAATTCAATATTGAAAAG+TGG + chr2_1:48140040-48140059 None:intergenic 25.0%
! CAATATTGAATTCCTAAAAC+AGG - chr2_1:48140045-48140064 Msa0209500:intron 25.0%
!! GAAAGCATAATAATCCTAAT+GGG + chr2_1:48140122-48140141 None:intergenic 25.0%
!! TGAAAGCATAATAATCCTAA+TGG + chr2_1:48140123-48140142 None:intergenic 25.0%
! ACAATAATGACTAAGCAATA+TGG + chr2_1:48140174-48140193 None:intergenic 25.0%
! AATTAGCATGACATATTTGT+TGG - chr2_1:48140398-48140417 Msa0209500:intron 25.0%
!!! TTTATTTTCTATTTACGGGA+AGG + chr2_1:48140623-48140642 None:intergenic 25.0%
! ATGAAAATACTATAATCGCT+TGG + chr2_1:48140676-48140695 None:intergenic 25.0%
! CTTGCAGATACAATTTAATA+GGG + chr2_1:48140921-48140940 None:intergenic 25.0%
! CAATCAATTCATATGAACAA+AGG + chr2_1:48141075-48141094 None:intergenic 25.0%
! GATTGATGTTTGTATATATC+TGG - chr2_1:48141090-48141109 Msa0209500:intron 25.0%
! TCCGAATTTATGATTTGAAT+CGG - chr2_1:48141159-48141178 Msa0209500:intron 25.0%
! ATATACAAAAACGACAACAA+CGG + chr2_1:48141334-48141353 None:intergenic 25.0%
! TTTGATATAAACATGAAGCT+TGG - chr2_1:48141380-48141399 Msa0209500:intron 25.0%
! GTAAGTAACAATAAGTTAGT+TGG - chr2_1:48141578-48141597 Msa0209500:intron 25.0%
! CATAACCTTAAAAAAGAACA+TGG + chr2_1:48141604-48141623 None:intergenic 25.0%
!!! TCATGTTTTTGATTTCCATA+CGG - chr2_1:48141767-48141786 Msa0209500:intron 25.0%
! AGATCCTATTATTACCTATA+TGG + chr2_1:48142080-48142099 None:intergenic 25.0%
!! TAGGATCTAAAACCAAAATA+AGG - chr2_1:48142092-48142111 Msa0209500:intron 25.0%
!!! ATATGATTTGGTCCTTATTT+TGG + chr2_1:48142107-48142126 None:intergenic 25.0%
! AGAACATAGGAAATATGATT+TGG + chr2_1:48142119-48142138 None:intergenic 25.0%
! AAATCATATTTCCTATGTTC+TGG - chr2_1:48142118-48142137 Msa0209500:intron 25.0%
! TAAAACAATGGCAAGAAAAA+GGG + chr2_1:48142592-48142611 None:intergenic 25.0%
! ATGCTAAAATGGTAAAACAA+TGG + chr2_1:48142604-48142623 None:intergenic 25.0%
! GTTCAAATATCATGCTAAAA+TGG + chr2_1:48142615-48142634 None:intergenic 25.0%
! TTTACTCAGATTCATTATGT+TGG + chr2_1:48142833-48142852 None:intergenic 25.0%
! TTGATAGTATGAAACCCTAA+AGG + chr2_1:48136681-48136700 None:intergenic 30.0%
CTAATAAGAAAGAAACCATC+AGG + chr2_1:48136831-48136850 None:intergenic 30.0%
! ATTGGATTGGAACATTTGAA+GGG - chr2_1:48137118-48137137 Msa0209500:intron 30.0%
CACTAAACATACTGAAAGAA+AGG + chr2_1:48137243-48137262 None:intergenic 30.0%
! GTGTTTAAATTGGACCTTTT+TGG + chr2_1:48137510-48137529 None:intergenic 30.0%
!!! ACTCGTAAATTTTTTGCCAT+TGG + chr2_1:48137550-48137569 None:intergenic 30.0%
AAAAAATTTACGAGTCCTTG+TGG - chr2_1:48137555-48137574 Msa0209500:intron 30.0%
AAAAATTTACGAGTCCTTGT+GGG - chr2_1:48137556-48137575 Msa0209500:intron 30.0%
GATTACTTGATCAATCCAAA+TGG + chr2_1:48137680-48137699 None:intergenic 30.0%
GTTCCATCACATTACATTAT+AGG - chr2_1:48137827-48137846 Msa0209500:intron 30.0%
!! ACATACTTGTTGTCTAAACT+TGG - chr2_1:48137940-48137959 Msa0209500:CDS 30.0%
!! CATACTTGTTGTCTAAACTT+GGG - chr2_1:48137941-48137960 Msa0209500:CDS 30.0%
TAAACTTGGGTAAAATCCAT+AGG - chr2_1:48137954-48137973 Msa0209500:CDS 30.0%
AATTGGAACTTTGATACCTA+TGG + chr2_1:48137973-48137992 None:intergenic 30.0%
!!! TATTTTTGGAGCAAAAAGAG+CGG + chr2_1:48138149-48138168 None:intergenic 30.0%
ATCTGTCATAAGATCGAAAT+GGG + chr2_1:48138395-48138414 None:intergenic 30.0%
GATTAAATGCTGAATCCAAA+AGG + chr2_1:48138581-48138600 None:intergenic 30.0%
TCAGTAAAGAACAAAGTGAA+GGG + chr2_1:48138705-48138724 None:intergenic 30.0%
TTCAGTAAAGAACAAAGTGA+AGG + chr2_1:48138706-48138725 None:intergenic 30.0%
GTCAATTATGAATACGATCA+AGG + chr2_1:48138855-48138874 None:intergenic 30.0%
AACCTTGTGAACTTATGATT+TGG + chr2_1:48138877-48138896 None:intergenic 30.0%
AAATCATAAGTTCACAAGGT+TGG - chr2_1:48138876-48138895 Msa0209500:intron 30.0%
GTGAGATTTACAATTCTGAT+TGG + chr2_1:48139027-48139046 None:intergenic 30.0%
ATCAGAATTGTAAATCTCAC+CGG - chr2_1:48139027-48139046 Msa0209500:intron 30.0%
! GAAGCATTATAGTGTTCTTT+AGG + chr2_1:48139126-48139145 None:intergenic 30.0%
AAAGAACACTATAATGCTTC+TGG - chr2_1:48139126-48139145 Msa0209500:intron 30.0%
TGTGGTATGCAATTATGTTT+GGG + chr2_1:48139301-48139320 None:intergenic 30.0%
TAATTTCTATGTGTCTAGTG+TGG + chr2_1:48139319-48139338 None:intergenic 30.0%
GTTGCATAAAATGATGATCT+TGG - chr2_1:48139494-48139513 Msa0209500:intron 30.0%
!!! GAGTAGTGAGGTTTTAAAAA+AGG - chr2_1:48139554-48139573 Msa0209500:intron 30.0%
AAAATTGCATCAAATACACC+CGG + chr2_1:48139643-48139662 None:intergenic 30.0%
! TGCAATTTTCTGCAATATCA+AGG - chr2_1:48139654-48139673 Msa0209500:intron 30.0%
TATAAGAAATGTTTCCACCA+CGG + chr2_1:48139692-48139711 None:intergenic 30.0%
ATACTAGTTGAGAAGTCATT+TGG + chr2_1:48139750-48139769 None:intergenic 30.0%
! TCATGCATTTTACATGTTTC+AGG + chr2_1:48139788-48139807 None:intergenic 30.0%
! CAGAAATCAATTCCTGTTTT+AGG + chr2_1:48140060-48140079 None:intergenic 30.0%
TTCAATGGTTTAAACCCATT+AGG - chr2_1:48140105-48140124 Msa0209500:intron 30.0%
TAATGACTAAGCAATATGGA+AGG + chr2_1:48140170-48140189 None:intergenic 30.0%
ATATCAGAGTGTGATACTAA+AGG + chr2_1:48140275-48140294 None:intergenic 30.0%
TGCAAATTGTGAAAGAAACA+CGG + chr2_1:48140530-48140549 None:intergenic 30.0%
TTTGCATGACTGATATTTGT+TGG - chr2_1:48140544-48140563 Msa0209500:intron 30.0%
!!! TGGTATTCATTTTGGTTGAT+CGG - chr2_1:48140564-48140583 Msa0209500:intron 30.0%
ATAATCGCTTGGTAAATTCT+AGG + chr2_1:48140665-48140684 None:intergenic 30.0%
TTGGTAGATGAATTCAGTTA+TGG + chr2_1:48140703-48140722 None:intergenic 30.0%
CCATAAATGAATTCAGCTAT+TGG + chr2_1:48140722-48140741 None:intergenic 30.0%
CCAATAGCTGAATTCATTTA+TGG - chr2_1:48140719-48140738 Msa0209500:intron 30.0%
AAATCTTGATTCTTTGAGCA+AGG - chr2_1:48140829-48140848 Msa0209500:intron 30.0%
GCTTGCAGATACAATTTAAT+AGG + chr2_1:48140922-48140941 None:intergenic 30.0%
ATTACAAAACAAGCTTATCC+TGG - chr2_1:48140963-48140982 Msa0209500:intron 30.0%
ATTATCACTTAATCTATGCC+AGG + chr2_1:48140984-48141003 None:intergenic 30.0%
! TAAAGAACAAGGCATTAACA+AGG + chr2_1:48141038-48141057 None:intergenic 30.0%
CAATTCATATGAACAAAGGT+GGG + chr2_1:48141071-48141090 None:intergenic 30.0%
TCAATTCATATGAACAAAGG+TGG + chr2_1:48141072-48141091 None:intergenic 30.0%
! GCCGATTCAAATCATAAATT+CGG + chr2_1:48141163-48141182 None:intergenic 30.0%
TACATGAACTCAATATAGTC+TGG + chr2_1:48141256-48141275 None:intergenic 30.0%
! ATTGAGTTCATGTACTGATA+TGG - chr2_1:48141262-48141281 Msa0209500:intron 30.0%
! TTGAGTTCATGTACTGATAT+GGG - chr2_1:48141263-48141282 Msa0209500:intron 30.0%
!! GAATCTTGTTGATAATTCAC+AGG - chr2_1:48141418-48141437 Msa0209500:intron 30.0%
GATGTTGTCAATCATCAAAA+AGG + chr2_1:48141627-48141646 None:intergenic 30.0%
!! ACAAACTTGTTACCAAACTT+GGG + chr2_1:48141723-48141742 None:intergenic 30.0%
!! AACAAACTTGTTACCAAACT+TGG + chr2_1:48141724-48141743 None:intergenic 30.0%
!!! CATGTTTTTGATTTCCATAC+GGG - chr2_1:48141768-48141787 Msa0209500:intron 30.0%
!!! GCATTTTTTTCGATTTCTCA+AGG + chr2_1:48141936-48141955 None:intergenic 30.0%
!!! AATGCTTCTGATTGTTGTTT+TGG - chr2_1:48141951-48141970 Msa0209500:intron 30.0%
ATTAATCCTTGCAATATCTG+TGG - chr2_1:48142008-48142027 Msa0209500:CDS 30.0%
!! TCGCTATATGTTTTGTTCTA+GGG + chr2_1:48142051-48142070 None:intergenic 30.0%
TATAGCGACTAATTCCATAT+AGG - chr2_1:48142063-48142082 Msa0209500:CDS 30.0%
TTTAGTTATCAAAAGATGCC+AGG + chr2_1:48142209-48142228 None:intergenic 30.0%
! GTTTGGTTTAATTCATTGTG+TGG - chr2_1:48142240-48142259 Msa0209500:intron 30.0%
GTAAAACAATGGCAAGAAAA+AGG + chr2_1:48142593-48142612 None:intergenic 30.0%
TTAGCATGATATTTGAACCT+TGG - chr2_1:48142617-48142636 Msa0209500:five_prime_UTR 30.0%
TAGCATGATATTTGAACCTT+GGG - chr2_1:48142618-48142637 Msa0209500:five_prime_UTR 30.0%
!!! TTTTAATTTCAGGGAGATTG+TGG - chr2_1:48142748-48142767 Msa0209500:five_prime_UTR 30.0%
! TTTAATTTCAGGGAGATTGT+GGG - chr2_1:48142749-48142768 Msa0209500:five_prime_UTR 30.0%
AATCTGAGTAAACAGAAATG+CGG - chr2_1:48142841-48142860 Msa0209500:five_prime_UTR 30.0%
TCTCTTATACTGTGACTAGT+CGG + chr2_1:48136343-48136362 None:intergenic 35.0%
!!! CTCAAAGCTCTGGAAATTTT+GGG + chr2_1:48136552-48136571 None:intergenic 35.0%
! CAAAATTTCCAGAGCTTTGA+GGG - chr2_1:48136551-48136570 Msa0209500:three_prime_UTR 35.0%
TTACGAAAAGTAACACAGGT+GGG + chr2_1:48136599-48136618 None:intergenic 35.0%
ATGATTGATGGAAACGGTAA+CGG + chr2_1:48136627-48136646 None:intergenic 35.0%
CTGTAAAAGAGATCAACAAC+TGG + chr2_1:48136798-48136817 None:intergenic 35.0%
TTTCTTATTAGCGCAAGCAA+AGG - chr2_1:48136840-48136859 Msa0209500:CDS 35.0%
! GATTGGATTGGAACATTTGA+AGG - chr2_1:48137117-48137136 Msa0209500:intron 35.0%
ATAGGAAAGTTAGCCCAAAA+AGG - chr2_1:48137493-48137512 Msa0209500:intron 35.0%
GAGTTTATAAATGACCCACA+AGG + chr2_1:48137573-48137592 None:intergenic 35.0%
! AGTTGGCCTAATACTATATG+AGG - chr2_1:48137611-48137630 Msa0209500:CDS 35.0%
TTACCGTCGTAAATGATATG+CGG - chr2_1:48137637-48137656 Msa0209500:CDS 35.0%
! CACTATCTTTTTCCACCATT+TGG - chr2_1:48137662-48137681 Msa0209500:CDS 35.0%
TACTTGATCAATCCAAATGG+TGG + chr2_1:48137677-48137696 None:intergenic 35.0%
GACTCTATGATAAGATGCAT+GGG + chr2_1:48137702-48137721 None:intergenic 35.0%
AGACTCTATGATAAGATGCA+TGG + chr2_1:48137703-48137722 None:intergenic 35.0%
TTATCATAGAGTCTCCATAC+TGG - chr2_1:48137709-48137728 Msa0209500:CDS 35.0%
! ATGTAATGTGATGGAACAGT+AGG + chr2_1:48137824-48137843 None:intergenic 35.0%
! TTTTGGCGTGCATAATTATC+AGG + chr2_1:48137868-48137887 None:intergenic 35.0%
ATTCTATGTGTGGTCTAGAT+TGG + chr2_1:48138032-48138051 None:intergenic 35.0%
AGAATCCCGATTTAGTGTAA+TGG - chr2_1:48138047-48138066 Msa0209500:intron 35.0%
GAATCCCGATTTAGTGTAAT+GGG - chr2_1:48138048-48138067 Msa0209500:intron 35.0%
AATCCCGATTTAGTGTAATG+GGG - chr2_1:48138049-48138068 Msa0209500:intron 35.0%
!!! GTGTCACTTACCCTATTTTT+GGG + chr2_1:48138087-48138106 None:intergenic 35.0%
!!! AGTGTCACTTACCCTATTTT+TGG + chr2_1:48138088-48138107 None:intergenic 35.0%
!!! TTTTTTTTTCTAACCTCCCG+CGG - chr2_1:48138119-48138138 Msa0209500:intron 35.0%
!! GGTATTTTCGAGGAAAAAAG+TGG + chr2_1:48138193-48138212 None:intergenic 35.0%
!!! CTAGAATAAGGGTATTTTCG+AGG + chr2_1:48138203-48138222 None:intergenic 35.0%
TTGGTAGGATCTTTCAATCT+TGG - chr2_1:48138260-48138279 Msa0209500:intron 35.0%
TGGATAAGATCATTCGATCT+TGG - chr2_1:48138338-48138357 Msa0209500:intron 35.0%
TCTGTCATAAGATCGAAATG+GGG + chr2_1:48138394-48138413 None:intergenic 35.0%
GATCTGTCATAAGATCGAAA+TGG + chr2_1:48138396-48138415 None:intergenic 35.0%
CAAAAGTCTACACAAACTCA+TGG + chr2_1:48138823-48138842 None:intergenic 35.0%
GACCAAATCATAAGTTCACA+AGG - chr2_1:48138872-48138891 Msa0209500:intron 35.0%
AAACAAAACTGCAGAAACTC+AGG - chr2_1:48138905-48138924 Msa0209500:intron 35.0%
! TTGTAATTTCTGGATGTGTC+CGG + chr2_1:48139049-48139068 None:intergenic 35.0%
ATGTTATGTTACAAGTGGCT+GGG + chr2_1:48139088-48139107 None:intergenic 35.0%
AGCCACTTGTAACATAACAT+GGG - chr2_1:48139088-48139107 Msa0209500:intron 35.0%
AACACTATAATGCTTCTGGA+AGG - chr2_1:48139130-48139149 Msa0209500:intron 35.0%
CTGAGTTCATGATTGTTGAT+AGG + chr2_1:48139194-48139213 None:intergenic 35.0%
GTGTGGTATGCAATTATGTT+TGG + chr2_1:48139302-48139321 None:intergenic 35.0%
GTACAGCATTCAATTAATGG+TGG - chr2_1:48139462-48139481 Msa0209500:intron 35.0%
ACATCAAAAACCTAGACACT+GGG + chr2_1:48139600-48139619 None:intergenic 35.0%
TGAATATGCACTGTAATTCG+TGG + chr2_1:48139813-48139832 None:intergenic 35.0%
!!! TACACTAGCATTTTTTGCAG+TGG - chr2_1:48140206-48140225 Msa0209500:intron 35.0%
ATACTAAAGGACTAATGCAG+GGG + chr2_1:48140262-48140281 None:intergenic 35.0%
GATACTAAAGGACTAATGCA+GGG + chr2_1:48140263-48140282 None:intergenic 35.0%
TGATACTAAAGGACTAATGC+AGG + chr2_1:48140264-48140283 None:intergenic 35.0%
! AAAGTTTGGGATGCATTAAC+AGG - chr2_1:48140433-48140452 Msa0209500:intron 35.0%
GCAAATTGTGAAAGAAACAC+GGG + chr2_1:48140529-48140548 None:intergenic 35.0%
! TTGTACTGTAGTTGTCACTT+TGG - chr2_1:48140781-48140800 Msa0209500:intron 35.0%
! AATGCCTTGTTCTTTATCTG+AGG - chr2_1:48141042-48141061 Msa0209500:intron 35.0%
GTATCCTCAGATAAAGAACA+AGG + chr2_1:48141049-48141068 None:intergenic 35.0%
GATTTATCCACTTCTTTAGG+AGG + chr2_1:48141194-48141213 None:intergenic 35.0%
AACAAGATTCAGTGCAATAG+AGG + chr2_1:48141408-48141427 None:intergenic 35.0%
!! TGTTGATAATTCACAGGCTA+TGG - chr2_1:48141424-48141443 Msa0209500:intron 35.0%
!! GTTGATAATTCACAGGCTAT+GGG - chr2_1:48141425-48141444 Msa0209500:intron 35.0%
!! ATGGTTCTACTGTCAAGTTT+TGG - chr2_1:48141544-48141563 Msa0209500:intron 35.0%
!! TGGTTCTACTGTCAAGTTTT+GGG - chr2_1:48141545-48141564 Msa0209500:intron 35.0%
!!! GTTGGCCATGTTCTTTTTTA+AGG - chr2_1:48141596-48141615 Msa0209500:intron 35.0%
AATCCATAGCTGAAAATCAC+AGG + chr2_1:48141651-48141670 None:intergenic 35.0%
! TGTGATTTTCAGCTATGGAT+TGG - chr2_1:48141650-48141669 Msa0209500:intron 35.0%
!! TTTGGTAACAAGTTTGTTGC+TGG - chr2_1:48141726-48141745 Msa0209500:intron 35.0%
!! TTGGTAACAAGTTTGTTGCT+GGG - chr2_1:48141727-48141746 Msa0209500:intron 35.0%
!! GTCGCTATATGTTTTGTTCT+AGG + chr2_1:48142052-48142071 None:intergenic 35.0%
AAATAGTTGGTCCAGAACAT+AGG + chr2_1:48142132-48142151 None:intergenic 35.0%
!!! TTTGTTTTACACTTCTGACC+TGG - chr2_1:48142188-48142207 Msa0209500:intron 35.0%
AAATATTGCGGTGTTCTATC+TGG - chr2_1:48142274-48142293 Msa0209500:intron 35.0%
TCTGATTCATCATGAGTCAA+TGG + chr2_1:48142419-48142438 None:intergenic 35.0%
! ATTGACTCATGATGAATCAG+AGG - chr2_1:48142418-48142437 Msa0209500:exon 35.0%
TTGACTCATGATGAATCAGA+GGG - chr2_1:48142419-48142438 Msa0209500:exon 35.0%
CATATAATGAATTGACGAGC+TGG - chr2_1:48142699-48142718 Msa0209500:five_prime_UTR 35.0%
! TTATACTGTGACTAGTCGGA+CGG + chr2_1:48136339-48136358 None:intergenic 40.0%
TAGTCACAGTATAAGAGAGC+AGG - chr2_1:48136345-48136364 Msa0209500:three_prime_UTR 40.0%
GTATAAGAGAGCAGGTCATA+AGG - chr2_1:48136353-48136372 Msa0209500:three_prime_UTR 40.0%
!!! CCTCAAAGCTCTGGAAATTT+TGG + chr2_1:48136553-48136572 None:intergenic 40.0%
CCAAAATTTCCAGAGCTTTG+AGG - chr2_1:48136550-48136569 Msa0209500:three_prime_UTR 40.0%
GTTACGAAAAGTAACACAGG+TGG + chr2_1:48136600-48136619 None:intergenic 40.0%
! GGTGTTACGAAAAGTAACAC+AGG + chr2_1:48136603-48136622 None:intergenic 40.0%
! AGTGCTGTTGTTGTTCCTTT+AGG - chr2_1:48136663-48136682 Msa0209500:CDS 40.0%
! GTGCTGTTGTTGTTCCTTTA+GGG - chr2_1:48136664-48136683 Msa0209500:CDS 40.0%
AAGAAACCATCAGGAGTAAC+AGG + chr2_1:48136822-48136841 None:intergenic 40.0%
! GGAACATTTGAAGGGCATAA+AGG - chr2_1:48137126-48137145 Msa0209500:intron 40.0%
! TGCTGTTTGGAGTTGTTGTT+TGG - chr2_1:48137149-48137168 Msa0209500:intron 40.0%
CTAAATCGGGATTCTATGTG+TGG + chr2_1:48138042-48138061 None:intergenic 40.0%
CAACCCCATTACACTAAATC+GGG + chr2_1:48138055-48138074 None:intergenic 40.0%
CCAACCCCATTACACTAAAT+CGG + chr2_1:48138056-48138075 None:intergenic 40.0%
! CGATTTAGTGTAATGGGGTT+GGG - chr2_1:48138054-48138073 Msa0209500:intron 40.0%
AACAGTCAAAGTCTCGAGAA+GGG + chr2_1:48138674-48138693 None:intergenic 40.0%
TAACAGTCAAAGTCTCGAGA+AGG + chr2_1:48138675-48138694 None:intergenic 40.0%
! ACAGGGTGGTTTGTAATTTC+TGG + chr2_1:48139059-48139078 None:intergenic 40.0%
CATGTTATGTTACAAGTGGC+TGG + chr2_1:48139089-48139108 None:intergenic 40.0%
CAGCCACTTGTAACATAACA+TGG - chr2_1:48139087-48139106 Msa0209500:intron 40.0%
GACCCATGTTATGTTACAAG+TGG + chr2_1:48139093-48139112 None:intergenic 40.0%
AAGTGAAACTTTGCTGCGAT+TGG + chr2_1:48139433-48139452 None:intergenic 40.0%
AGCATTCAATTAATGGTGGC+AGG - chr2_1:48139466-48139485 Msa0209500:intron 40.0%
GCATTCAATTAATGGTGGCA+GGG - chr2_1:48139467-48139486 Msa0209500:intron 40.0%
ATGATGATCTTGGTTAGGGA+TGG - chr2_1:48139504-48139523 Msa0209500:intron 40.0%
TGATGATCTTGGTTAGGGAT+GGG - chr2_1:48139505-48139524 Msa0209500:intron 40.0%
!! GTGTTGACGAATGTTTTCAG+AGG - chr2_1:48139530-48139549 Msa0209500:intron 40.0%
CATCAAAAACCTAGACACTG+GGG + chr2_1:48139599-48139618 None:intergenic 40.0%
GACATCAAAAACCTAGACAC+TGG + chr2_1:48139601-48139620 None:intergenic 40.0%
TAGTTGAGAAGTCATTTGGC+TGG + chr2_1:48139746-48139765 None:intergenic 40.0%
GAATGTAAAAAAGGGCAACC+CGG - chr2_1:48139847-48139866 Msa0209500:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr2_1:48139913-48139932 None:intergenic 40.0%
CTCTTGTGTAAAACAGGGTA+AGG + chr2_1:48139939-48139958 None:intergenic 40.0%
! CTTACCCTGTTTTACACAAG+AGG - chr2_1:48139937-48139956 Msa0209500:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG + chr2_1:48139944-48139963 None:intergenic 40.0%
AACAGCCTCTTGTGTAAAAC+AGG + chr2_1:48139945-48139964 None:intergenic 40.0%
GTTTGTGTGCAGCAAAGTTT+GGG - chr2_1:48140420-48140439 Msa0209500:intron 40.0%
TCTAGGCATGCACACTTTAA+TGG + chr2_1:48140648-48140667 None:intergenic 40.0%
GTTTGTATATATCTGGGAGC+AGG - chr2_1:48141097-48141116 Msa0209500:intron 40.0%
GGGGATTTATCCACTTCTTT+AGG + chr2_1:48141197-48141216 None:intergenic 40.0%
AAAGAAGTGGATAAATCCCC+TGG - chr2_1:48141197-48141216 Msa0209500:intron 40.0%
! AGTTCATGTACTGATATGGG+AGG - chr2_1:48141266-48141285 Msa0209500:intron 40.0%
GACCATACTATGTTGACAGT+TGG - chr2_1:48141308-48141327 Msa0209500:intron 40.0%
CGCTATATTACAACTGCTGA+TGG - chr2_1:48141525-48141544 Msa0209500:intron 40.0%
! TCACCTGTGATTTTCAGCTA+TGG - chr2_1:48141645-48141664 Msa0209500:intron 40.0%
!! TGGTAACAAGTTTGTTGCTG+GGG - chr2_1:48141728-48141747 Msa0209500:intron 40.0%
GTGAACTTGTGTATGCTACA+CGG + chr2_1:48141865-48141884 None:intergenic 40.0%
! AACTGACTCATGCTTTGTAG+GGG + chr2_1:48141904-48141923 None:intergenic 40.0%
! CAACTGACTCATGCTTTGTA+GGG + chr2_1:48141905-48141924 None:intergenic 40.0%
CATGATCCACAGATATTGCA+AGG + chr2_1:48142017-48142036 None:intergenic 40.0%
TATTCTGATGGTTCCATCCT+CGG + chr2_1:48142384-48142403 None:intergenic 40.0%
AGGATGGAACCATCAGAATA+TGG - chr2_1:48142384-48142403 Msa0209500:CDS 40.0%
TCAGAGGGTTTATCACCAAA+TGG - chr2_1:48142434-48142453 Msa0209500:five_prime_UTR 40.0%
TTTATCACCAAATGGAACCC+TGG - chr2_1:48142442-48142461 Msa0209500:five_prime_UTR 40.0%
! ATTTGCCTTCTCCTTTTCCA+GGG + chr2_1:48142462-48142481 None:intergenic 40.0%
! TGAGGGTTTTCATATTGCAG+AGG - chr2_1:48142508-48142527 Msa0209500:five_prime_UTR 40.0%
ATGAATTGACGAGCTGGTTA+AGG - chr2_1:48142705-48142724 Msa0209500:five_prime_UTR 40.0%
GGTAGAAGTAACACAGAGCT+GGG + chr2_1:48136411-48136430 None:intergenic 45.0%
!! TTTCCAGAGCTTTGAGGGTT+AGG - chr2_1:48136556-48136575 Msa0209500:three_prime_UTR 45.0%
! ATTGATGGAAACGGTAACGG+CGG + chr2_1:48136624-48136643 None:intergenic 45.0%
! ACGGTACCTCTTGTTTGTCA+CGG - chr2_1:48136762-48136781 Msa0209500:CDS 45.0%
TACAGTCCTGTTACTCCTGA+TGG - chr2_1:48136813-48136832 Msa0209500:CDS 45.0%
TCTCTCCATTCCTCAGCATA+GGG + chr2_1:48137092-48137111 None:intergenic 45.0%
!! AAGGGCATAAAGGTGCTGTT+TGG - chr2_1:48137136-48137155 Msa0209500:intron 45.0%
GCACGTGTTGGATGTTTATC+CGG + chr2_1:48137432-48137451 None:intergenic 45.0%
ATGAATGCAAGTGCACGTGT+TGG + chr2_1:48137444-48137463 None:intergenic 45.0%
GCACCGCATATCATTTACGA+CGG + chr2_1:48137643-48137662 None:intergenic 45.0%
! ATGTGATGGAACAGTAGGCT+AGG + chr2_1:48137819-48137838 None:intergenic 45.0%
GGCGTGCATAATTATCAGGT+TGG + chr2_1:48137864-48137883 None:intergenic 45.0%
! CCGATTTAGTGTAATGGGGT+TGG - chr2_1:48138053-48138072 Msa0209500:intron 45.0%
GAAAAAAGTGGACGTGGTTG+GGG + chr2_1:48138181-48138200 None:intergenic 45.0%
GGAAAAAAGTGGACGTGGTT+GGG + chr2_1:48138182-48138201 None:intergenic 45.0%
AGGAAAAAAGTGGACGTGGT+TGG + chr2_1:48138183-48138202 None:intergenic 45.0%
TTCGAGGAAAAAAGTGGACG+TGG + chr2_1:48138187-48138206 None:intergenic 45.0%
TTGGGCACTACATCTCTTCA+TGG + chr2_1:48139283-48139302 None:intergenic 45.0%
CACCTTCCAGAAGCAATGTT+GGG + chr2_1:48139361-48139380 None:intergenic 45.0%
ATTGACAGAAGAAAGGGACC+AGG - chr2_1:48139398-48139417 Msa0209500:intron 45.0%
CATTTGGCTGGAATCACTGT+GGG + chr2_1:48139734-48139753 None:intergenic 45.0%
TCATTTGGCTGGAATCACTG+TGG + chr2_1:48139735-48139754 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + chr2_1:48139914-48139933 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr2_1:48139917-48139936 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr2_1:48139948-48139967 Msa0209500:intron 45.0%
GGTTTGTGTGCAGCAAAGTT+TGG - chr2_1:48140419-48140438 Msa0209500:intron 45.0%
!!! CAGAGCATGTGCTTTTTCTG+AGG - chr2_1:48140492-48140511 Msa0209500:intron 45.0%
TTGAGCAAGGACTGAGTGTA+TGG - chr2_1:48140842-48140861 Msa0209500:intron 45.0%
TGAGCAAGGACTGAGTGTAT+GGG - chr2_1:48140843-48140862 Msa0209500:intron 45.0%
! ATACCCACCTTTTGCTCACT+GGG - chr2_1:48141120-48141139 Msa0209500:intron 45.0%
! ACTTCTTTAGGAGGTGCATC+AGG + chr2_1:48141185-48141204 None:intergenic 45.0%
TGATGCACCTCCTAAAGAAG+TGG - chr2_1:48141184-48141203 Msa0209500:intron 45.0%
ATAAATCCCCTGGTTCAGTC+AGG - chr2_1:48141207-48141226 Msa0209500:intron 45.0%
GGCCAACTGTCAACATAGTA+TGG + chr2_1:48141313-48141332 None:intergenic 45.0%
AGGCTATGGGATGTAAGAAC+TGG - chr2_1:48141438-48141457 Msa0209500:intron 45.0%
CTCACTTCAGCACTAGTCAT+AGG + chr2_1:48141495-48141514 None:intergenic 45.0%
CTATGACATGCCTTGCAATG+TGG - chr2_1:48141680-48141699 Msa0209500:intron 45.0%
! GAAGCTGATTCCACATTGCA+AGG + chr2_1:48141693-48141712 None:intergenic 45.0%
!! GGTAACAAGTTTGTTGCTGG+GGG - chr2_1:48141729-48141748 Msa0209500:intron 45.0%
TAGGGGGGAAAAGTTGAAAC+TGG + chr2_1:48141887-48141906 None:intergenic 45.0%
! ACTGACTCATGCTTTGTAGG+GGG + chr2_1:48141903-48141922 None:intergenic 45.0%
! CCAACTGACTCATGCTTTGT+AGG + chr2_1:48141906-48141925 None:intergenic 45.0%
CCTACAAAGCATGAGTCAGT+TGG - chr2_1:48141903-48141922 Msa0209500:intron 45.0%
GCATGCAACAAAGGACATCA+TGG - chr2_1:48142305-48142324 Msa0209500:intron 45.0%
ACCATCAGAATATGGCAGAC+AGG - chr2_1:48142392-48142411 Msa0209500:CDS 45.0%
CCATCAGAATATGGCAGACA+GGG - chr2_1:48142393-48142412 Msa0209500:CDS 45.0%
ACCAAATGGAACCCTGGAAA+AGG - chr2_1:48142448-48142467 Msa0209500:five_prime_UTR 45.0%
! TCCTTTTCCAGGGTTCCATT+TGG + chr2_1:48142452-48142471 None:intergenic 45.0%
! CATTTGCCTTCTCCTTTTCC+AGG + chr2_1:48142463-48142482 None:intergenic 45.0%
AAAGGAGAAGGCAAATGCAG+AGG - chr2_1:48142466-48142485 Msa0209500:five_prime_UTR 45.0%
! GGGTTTTCATATTGCAGAGG+AGG - chr2_1:48142511-48142530 Msa0209500:five_prime_UTR 45.0%
CTCTTCCTTTCCTTTGGACT+TGG + chr2_1:48142537-48142556 None:intergenic 45.0%
CAAGTCCAAAGGAAAGGAAG+AGG - chr2_1:48142535-48142554 Msa0209500:five_prime_UTR 45.0%
CATGTATATTAGAGGGCCCA+AGG + chr2_1:48142637-48142656 None:intergenic 45.0%
TCAGCGAGATATTCTCTGCA+GGG + chr2_1:48142873-48142892 None:intergenic 45.0%
TGCAGAGAATATCTCGCTGA+GGG - chr2_1:48142873-48142892 Msa0209500:five_prime_UTR 45.0%
!!! ATTTAATTTTGTTATTTTAT+TGG - chr2_1:48137023-48137042 Msa0209500:intron 5.0%
GTCCAGAACTACAGCGTAAG+AGG - chr2_1:48136294-48136313 Msa0209500:three_prime_UTR 50.0%
CTCCTCTTACGCTGTAGTTC+TGG + chr2_1:48136299-48136318 None:intergenic 50.0%
AAGTAACACAGAGCTGGGAG+AGG + chr2_1:48136406-48136425 None:intergenic 50.0%
GGGTAGAAGTAACACAGAGC+TGG + chr2_1:48136412-48136431 None:intergenic 50.0%
GAGTGACCGTGACAAACAAG+AGG + chr2_1:48136771-48136790 None:intergenic 50.0%
! TATCACGTGTCGGCACTTGT+CGG + chr2_1:48137001-48137020 None:intergenic 50.0%
TAGATGCTAGCCCTATGCTG+AGG - chr2_1:48137079-48137098 Msa0209500:intron 50.0%
GTCTCTCCATTCCTCAGCAT+AGG + chr2_1:48137093-48137112 None:intergenic 50.0%
ATGCTGAGGAATGGAGAGAC+TGG - chr2_1:48137093-48137112 Msa0209500:intron 50.0%
GGAATGGAGAGACTGGAGAT+TGG - chr2_1:48137100-48137119 Msa0209500:intron 50.0%
GGAGAGACTGGAGATTGGAT+TGG - chr2_1:48137105-48137124 Msa0209500:intron 50.0%
TGAGGAAGTGGGATCCAGTA+TGG + chr2_1:48137726-48137745 None:intergenic 50.0%
CAAGCGCATGATGAGGAAGT+GGG + chr2_1:48137737-48137756 None:intergenic 50.0%
AGCAAAGCAAGCGCATGATG+AGG + chr2_1:48137744-48137763 None:intergenic 50.0%
CATGCGCTTGCTTTGCTCAT+TGG - chr2_1:48137747-48137766 Msa0209500:intron 50.0%
!!! TGGGGAAAGGGGGGTATTTT+TGG + chr2_1:48138163-48138182 None:intergenic 50.0%
TGTTACAAGTGGCTGGGTGT+GGG + chr2_1:48139082-48139101 None:intergenic 50.0%
ATGTTACAAGTGGCTGGGTG+TGG + chr2_1:48139083-48139102 None:intergenic 50.0%
CCAGAAGCAATGTTGGGTGT+GGG + chr2_1:48139355-48139374 None:intergenic 50.0%
TCCAGAAGCAATGTTGGGTG+TGG + chr2_1:48139356-48139375 None:intergenic 50.0%
CACCCAACATTGCTTCTGGA+AGG - chr2_1:48139356-48139375 Msa0209500:intron 50.0%
CCACCTTCCAGAAGCAATGT+TGG + chr2_1:48139362-48139381 None:intergenic 50.0%
! CCAACATTGCTTCTGGAAGG+TGG - chr2_1:48139359-48139378 Msa0209500:intron 50.0%
! GTTTTCAGAGGCGAGTAGTG+AGG - chr2_1:48139542-48139561 Msa0209500:intron 50.0%
TGGGGTCACAATCACTGTTG+TGG + chr2_1:48139581-48139600 None:intergenic 50.0%
TGATTGTGACCCCAGTGTCT+AGG - chr2_1:48139587-48139606 Msa0209500:intron 50.0%
TGCATCAAATACACCCGGTG+TGG + chr2_1:48139638-48139657 None:intergenic 50.0%
CACTCGTGAAGTTCAAGTCC+TGG + chr2_1:48139969-48139988 None:intergenic 50.0%
CGGCAGAATGCAATGTGTAG+CGG + chr2_1:48140232-48140251 None:intergenic 50.0%
! GATACCCACCTTTTGCTCAC+TGG - chr2_1:48141119-48141138 Msa0209500:intron 50.0%
! TACCCACCTTTTGCTCACTG+GGG - chr2_1:48141121-48141140 Msa0209500:intron 50.0%
AACACTCCTGACTGAACCAG+GGG + chr2_1:48141216-48141235 None:intergenic 50.0%
CAACACTCCTGACTGAACCA+GGG + chr2_1:48141217-48141236 None:intergenic 50.0%
!! GTTCAGTCAGGAGTGTTGCA+TGG - chr2_1:48141219-48141238 Msa0209500:intron 50.0%
AGCACTAGTCATAGGCGACT+TGG + chr2_1:48141487-48141506 None:intergenic 50.0%
! GACTAGTGCTGAAGTGAGTC+AGG - chr2_1:48141497-48141516 Msa0209500:intron 50.0%
! AGTGCTGAAGTGAGTCAGGA+TGG - chr2_1:48141501-48141520 Msa0209500:intron 50.0%
GCTTCGTTAGAGCCCAAGTT+TGG - chr2_1:48141708-48141727 Msa0209500:intron 50.0%
TTCCATACGGGCGATGAGAT+TGG - chr2_1:48141780-48141799 Msa0209500:intron 50.0%
TACCAATCTCATCGCCCGTA+TGG + chr2_1:48141785-48141804 None:intergenic 50.0%
CTGACTCATGCTTTGTAGGG+GGG + chr2_1:48141902-48141921 None:intergenic 50.0%
TGCGGTGTTCTATCTGGTGA+TGG - chr2_1:48142280-48142299 Msa0209500:intron 50.0%
GTGATGGCAGCATGCAACAA+AGG - chr2_1:48142296-48142315 Msa0209500:intron 50.0%
ATGGTCCTGTACACTGTGTC+CGG - chr2_1:48142324-48142343 Msa0209500:CDS 50.0%
ATTCTCCTCCAGGAGAGAAC+CGG + chr2_1:48142346-48142365 None:intergenic 50.0%
GATGCATACGATTCTCCTCC+AGG + chr2_1:48142356-48142375 None:intergenic 50.0%
GGAGGAGAATCGTATGCATC+AGG - chr2_1:48142356-48142375 Msa0209500:CDS 50.0%
ATCGTATGCATCAGGATCCG+AGG - chr2_1:48142364-48142383 Msa0209500:CDS 50.0%
TATGCATCAGGATCCGAGGA+TGG - chr2_1:48142368-48142387 Msa0209500:CDS 50.0%
CCCTGTCTGCCATATTCTGA+TGG + chr2_1:48142396-48142415 None:intergenic 50.0%
TGGAACCCTGGAAAAGGAGA+AGG - chr2_1:48142454-48142473 Msa0209500:five_prime_UTR 50.0%
GTCCAAAGGAAAGGAAGAGG+CGG - chr2_1:48142538-48142557 Msa0209500:five_prime_UTR 50.0%
TCCAAAGGAAAGGAAGAGGC+GGG - chr2_1:48142539-48142558 Msa0209500:five_prime_UTR 50.0%
TCAGGGAGATTGTGGGATAC+TGG - chr2_1:48142756-48142775 Msa0209500:five_prime_UTR 50.0%
CTCAGCGAGATATTCTCTGC+AGG + chr2_1:48142874-48142893 None:intergenic 50.0%
CTGCAGAGAATATCTCGCTG+AGG - chr2_1:48142872-48142891 Msa0209500:five_prime_UTR 50.0%
GAGAATATCTCGCTGAGGGT+AGG - chr2_1:48142877-48142896 Msa0209500:five_prime_UTR 50.0%
ATATCTCGCTGAGGGTAGGT+TGG - chr2_1:48142881-48142900 Msa0209500:five_prime_UTR 50.0%
TATCTCGCTGAGGGTAGGTT+GGG - chr2_1:48142882-48142901 Msa0209500:five_prime_UTR 50.0%
! GACTAGTCGGACGGATGAGA+TGG + chr2_1:48136330-48136349 None:intergenic 55.0%
ACACAGAGCTGGGAGAGGAA+GGG + chr2_1:48136401-48136420 None:intergenic 55.0%
AACACAGAGCTGGGAGAGGA+AGG + chr2_1:48136402-48136421 None:intergenic 55.0%
CCTCCTAACCCTCAAAGCTC+TGG + chr2_1:48136562-48136581 None:intergenic 55.0%
!! CCAGAGCTTTGAGGGTTAGG+AGG - chr2_1:48136559-48136578 Msa0209500:three_prime_UTR 55.0%
GCTAGCCCTATGCTGAGGAA+TGG - chr2_1:48137084-48137103 Msa0209500:intron 55.0%
GCAAGCGCATGATGAGGAAG+TGG + chr2_1:48137738-48137757 None:intergenic 55.0%
ACTGTGTCCCTTCCTCCTAG+TGG - chr2_1:48137793-48137812 Msa0209500:intron 55.0%
GAACAGTAGGCTAGGCCACT+AGG + chr2_1:48137811-48137830 None:intergenic 55.0%
AGTGGACGTGGTTGGGGAAA+GGG + chr2_1:48138175-48138194 None:intergenic 55.0%
AAGTGGACGTGGTTGGGGAA+AGG + chr2_1:48138176-48138195 None:intergenic 55.0%
CCCACACCCAACATTGCTTC+TGG - chr2_1:48139352-48139371 Msa0209500:intron 55.0%
ACAGAAGAAAGGGACCAGGC+TGG - chr2_1:48139402-48139421 Msa0209500:intron 55.0%
! TGCGATTGGTTGTTCCAGCC+TGG + chr2_1:48139419-48139438 None:intergenic 55.0%
TCCACGCATAGTGACCACAC+CGG - chr2_1:48139621-48139640 Msa0209500:intron 55.0%
GGCTGGAATCACTGTGGGAT+TGG + chr2_1:48139729-48139748 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG - chr2_1:48139873-48139892 Msa0209500:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG - chr2_1:48139874-48139893 Msa0209500:intron 55.0%
! ACCCACCTTTTGCTCACTGG+GGG - chr2_1:48141122-48141141 Msa0209500:intron 55.0%
TCCCCCAGTGAGCAAAAGGT+GGG + chr2_1:48141126-48141145 None:intergenic 55.0%
GCAACACTCCTGACTGAACC+AGG + chr2_1:48141218-48141237 None:intergenic 55.0%
!! GTACTGATATGGGAGGCGTC+AGG - chr2_1:48141273-48141292 Msa0209500:intron 55.0%
!! GCGACTTGGTGTCAAGTGTC+TGG + chr2_1:48141473-48141492 None:intergenic 55.0%
TTGCTGGGGGAGAAGACTTG+TGG - chr2_1:48141742-48141761 Msa0209500:intron 55.0%
TGCTGGGGGAGAAGACTTGT+GGG - chr2_1:48141743-48141762 Msa0209500:intron 55.0%
GAGAACCGGACACAGTGTAC+AGG + chr2_1:48142332-48142351 None:intergenic 55.0%
GGAGAAGGCAAATGCAGAGG+AGG - chr2_1:48142469-48142488 Msa0209500:five_prime_UTR 55.0%
GAAGGCAAATGCAGAGGAGG+AGG - chr2_1:48142472-48142491 Msa0209500:five_prime_UTR 55.0%
GAGGTTTCGCGCAGGATTGA+GGG - chr2_1:48142491-48142510 Msa0209500:five_prime_UTR 55.0%
GGAGGCCAAGTCCAAAGGAA+AGG - chr2_1:48142529-48142548 Msa0209500:five_prime_UTR 55.0%
CCAAAGGAAAGGAAGAGGCG+GGG - chr2_1:48142540-48142559 Msa0209500:five_prime_UTR 55.0%
CAAAGGAAAGGAAGAGGCGG+GGG - chr2_1:48142541-48142560 Msa0209500:five_prime_UTR 55.0%
GGCTAGGCCACTAGGAGGAA+GGG + chr2_1:48137803-48137822 None:intergenic 60.0%
AGGCTAGGCCACTAGGAGGA+AGG + chr2_1:48137804-48137823 None:intergenic 60.0%
CAGTAGGCTAGGCCACTAGG+AGG + chr2_1:48137808-48137827 None:intergenic 60.0%
! GTGTAATGGGGTTGGGCGCT+CGG - chr2_1:48138061-48138080 Msa0209500:intron 60.0%
TGGGCGCTCGGCCCAAAAAT+AGG - chr2_1:48138073-48138092 Msa0209500:intron 60.0%
GGGCGCTCGGCCCAAAAATA+GGG - chr2_1:48138074-48138093 Msa0209500:intron 60.0%
TGGACGTGGTTGGGGAAAGG+GGG + chr2_1:48138173-48138192 None:intergenic 60.0%
GTGGACGTGGTTGGGGAAAG+GGG + chr2_1:48138174-48138193 None:intergenic 60.0%
AAGTGGCTGGGTGTGGGACA+GGG + chr2_1:48139076-48139095 None:intergenic 60.0%
CCACGCATAGTGACCACACC+GGG - chr2_1:48139622-48139641 Msa0209500:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG + chr2_1:48139869-48139888 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr2_1:48139885-48139904 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr2_1:48139886-48139905 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr2_1:48139885-48139904 Msa0209500:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr2_1:48139886-48139905 Msa0209500:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr2_1:48139901-48139920 None:intergenic 60.0%
CTCCCCCAGTGAGCAAAAGG+TGG + chr2_1:48141127-48141146 None:intergenic 60.0%
CTGCTCCCCCAGTGAGCAAA+AGG + chr2_1:48141130-48141149 None:intergenic 60.0%
CACTGTGTCCGGTTCTCTCC+TGG - chr2_1:48142335-48142354 Msa0209500:CDS 60.0%
TGTGTCCGGTTCTCTCCTGG+AGG - chr2_1:48142338-48142357 Msa0209500:CDS 60.0%
GGAGGTTTCGCGCAGGATTG+AGG - chr2_1:48142490-48142509 Msa0209500:five_prime_UTR 60.0%
GCAGAGGAGGCCAAGTCCAA+AGG - chr2_1:48142524-48142543 Msa0209500:five_prime_UTR 60.0%
CCCCGCCTCTTCCTTTCCTT+TGG + chr2_1:48142543-48142562 None:intergenic 60.0%
GCAAACCAATCCCTGCGCCC+TGG - chr2_1:48136375-48136394 Msa0209500:three_prime_UTR 65.0%
AGCTGGGAGAGGAAGGGCCA+GGG + chr2_1:48136395-48136414 None:intergenic 65.0%
CAAAAAGAGCGGCGAGCCGC+GGG + chr2_1:48138138-48138157 None:intergenic 65.0%
GCAAAAAGAGCGGCGAGCCG+CGG + chr2_1:48138139-48138158 None:intergenic 65.0%
GGACGTGGTTGGGGAAAGGG+GGG + chr2_1:48138172-48138191 None:intergenic 65.0%
CAAGTGGCTGGGTGTGGGAC+AGG + chr2_1:48139077-48139096 None:intergenic 65.0%
CCCGGTGTGGTCACTATGCG+TGG + chr2_1:48139625-48139644 None:intergenic 65.0%
CAAGGATCACAGCGCAGCCG+TGG - chr2_1:48139672-48139691 Msa0209500:intron 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG + chr2_1:48139868-48139887 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr2_1:48139879-48139898 Msa0209500:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr2_1:48139880-48139899 Msa0209500:intron 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr2_1:48139884-48139903 Msa0209500:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr2_1:48139899-48139918 Msa0209500:intron 65.0%
CAGAGGAGGAGGTTTCGCGC+AGG - chr2_1:48142483-48142502 Msa0209500:five_prime_UTR 65.0%
AGGAAAGGAAGAGGCGGGGG+TGG - chr2_1:48142544-48142563 Msa0209500:five_prime_UTR 65.0%
AAGGGCCAGGGCGCAGGGAT+TGG + chr2_1:48136383-48136402 None:intergenic 70.0%
AGAGGAAGGGCCAGGGCGCA+GGG + chr2_1:48136388-48136407 None:intergenic 70.0%
GAGCTGGGAGAGGAAGGGCC+AGG + chr2_1:48136396-48136415 None:intergenic 70.0%
TGGCTGGGTGTGGGACAGGG+TGG + chr2_1:48139073-48139092 None:intergenic 70.0%
GGATCACAGCGCAGCCGTGG+TGG - chr2_1:48139675-48139694 Msa0209500:intron 70.0%
GAGAGGAAGGGCCAGGGCGC+AGG + chr2_1:48136389-48136408 None:intergenic 75.0%
AAAGAGCGGCGAGCCGCGGG+AGG + chr2_1:48138135-48138154 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 48136259 48142910 48136259 ID=Msa0209500;Name=Msa0209500
chr2_1 mRNA 48136259 48142910 48136259 ID=Msa0209500-mRNA-1;Parent=Msa0209500;Name=Msa0209500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=485|1|1|1|1|1|7|336|352
chr2_1 exon 48136259 48136863 48136259 ID=Msa0209500-mRNA-1:exon:13453;Parent=Msa0209500-mRNA-1
chr2_1 exon 48137368 48137507 48137368 ID=Msa0209500-mRNA-1:exon:13452;Parent=Msa0209500-mRNA-1
chr2_1 exon 48137592 48137729 48137592 ID=Msa0209500-mRNA-1:exon:13451;Parent=Msa0209500-mRNA-1
chr2_1 exon 48137875 48138050 48137875 ID=Msa0209500-mRNA-1:exon:13450;Parent=Msa0209500-mRNA-1
chr2_1 exon 48138656 48138737 48138656 ID=Msa0209500-mRNA-1:exon:13449;Parent=Msa0209500-mRNA-1
chr2_1 exon 48141952 48142087 48141952 ID=Msa0209500-mRNA-1:exon:13448;Parent=Msa0209500-mRNA-1
chr2_1 exon 48142308 48142910 48142308 ID=Msa0209500-mRNA-1:exon:13447;Parent=Msa0209500-mRNA-1
chr2_1 five_prime_UTR 48142426 48142910 48142426 ID=Msa0209500-mRNA-1:five_prime_utr;Parent=Msa0209500-mRNA-1
chr2_1 CDS 48142308 48142425 48142308 ID=Msa0209500-mRNA-1:cds;Parent=Msa0209500-mRNA-1
chr2_1 CDS 48141952 48142087 48141952 ID=Msa0209500-mRNA-1:cds;Parent=Msa0209500-mRNA-1
chr2_1 CDS 48138656 48138737 48138656 ID=Msa0209500-mRNA-1:cds;Parent=Msa0209500-mRNA-1
chr2_1 CDS 48137875 48138050 48137875 ID=Msa0209500-mRNA-1:cds;Parent=Msa0209500-mRNA-1
chr2_1 CDS 48137592 48137729 48137592 ID=Msa0209500-mRNA-1:cds;Parent=Msa0209500-mRNA-1
chr2_1 CDS 48137368 48137507 48137368 ID=Msa0209500-mRNA-1:cds;Parent=Msa0209500-mRNA-1
chr2_1 CDS 48136595 48136863 48136595 ID=Msa0209500-mRNA-1:cds;Parent=Msa0209500-mRNA-1
chr2_1 three_prime_UTR 48136259 48136594 48136259 ID=Msa0209500-mRNA-1:three_prime_utr;Parent=Msa0209500-mRNA-1
Gene Sequence

>Msa0209500

ATGGAAAAGAAAAAAGTTACGGTACCTCTTGTTTGTCACGGTCACTCTCGTCCAGTTGTTGATCTCTTTTACAGTCCTGTTACTCCTGATGGTTTCTTTCTTATTAGCGCAAGCAAAGATGCTAGCCCTATGCTGAGGAATGGAGAGACTGGAGATTGGATTGGAACATTTGAAGGGCATAAAGGTGCTGTTTGGAGTTGTTGTTTGGATGCTAATGCTTTGCGCGCTGCTACTGCTTCTGCTGATTTCTCAACCAAAGTTTGGGATGCATTAACAGGTGACGCGTTACATTCTTTTGAGCATAAGCACATTGTCAGAGCATGTGCTTTTTCTGAGGATACCCACCTTTTGCTCACTGGGGGAGCAGAGAAAATTCTCCGAATTTATGATTTGAATCGGCCTGATGCACCTCCTAAAGAAGTGGATAAATCCCCTGGTTCAGTCAGGAGTGTTGCATGGCTTCATAGTGACCAGACTATATTGAGTTCATGTACTGATATGGGAGGCGTCAGGCTATGGGATGTAAGAACTGGTAAAATTGTCCAGACACTTGACACCAAGTCGCCTATGACTAGTGCTGAAGTGAGTCAGGATGGTCGCTATATTACAACTGCTGATGGTTCTACTGTCAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGACATGCCTTGCAATGTGGAATCAGCTTCGTTAGAGCCCAAGTTTGGTAACAAGTTTGTTGCTGGGGGAGAAGACTTGTGGGTTCATGTTTTTGATTTCCATACGGGCGATGAGATTGCATGCAACAAAGGACATCATGGTCCTGTACACTGTGTCCGGTTCTCTCCTGGAGGAGAATCGTATGCATCAGGATCCGAGGATGGAACCATCAGAATATGGCAGACAGGGCCATTGACTCATGATGAATCAGAGGGTTTATCACCAAATGGAACCCTGGAAAAGGAGAAGGCAAATGCAGAGGAGGAGGTTTCGCGCAGGATTGAGGGTTTTCATATTGCAGAGGAGGCCAAGTCCAAAGGAAAGGAAGAGGCGGGGGTGGAATTATGA
Protein sequence

>Msa0209500

MEKKKVTVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDASPMLRNGETGDWIGTFEGHKGAVWSCCLDANALRAATASADFSTKVWDALTGDALHSFEHKHIVRACAFSEDTHLLLTGGAEKILRIYDLNRPDAPPKEVDKSPGSVRSVAWLHSDQTILSSCTDMGGVRLWDVRTGKIVQTLDTKSPMTSAEVSQDGRYITTADGSTVKFWDANHYGLVKSYDMPCNVESASLEPKFGNKFVAGGEDLWVHVFDFHTGDEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDESEGLSPNGTLEKEKANAEEEVSRRIEGFHIAEEAKSKGKEEAGVEL*