AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372940 MtrunA17_Chr3g0121851 99.363 471 3 0 1 471 1 471 0.0 974
Msa0372940 MtrunA17_Chr8g0378091 94.268 471 27 0 1 471 1 471 0.0 935
Msa0372940 MtrunA17_Chr2g0277581 64.440 464 160 1 4 462 128 591 0.0 645
Msa0372940 MtrunA17_Chr3g0115291 64.425 461 156 2 7 462 118 575 0.0 638
Msa0372940 MtrunA17_Chr5g0411661 58.369 466 187 4 9 469 53 516 0.0 555
Msa0372940 MtrunA17_Chr5g0428001 57.602 467 189 5 9 469 42 505 0.0 551
Msa0372940 MtrunA17_Chr2g0285171 59.607 458 165 6 12 461 87 532 0.0 544
Msa0372940 MtrunA17_Chr7g0268951 63.636 176 63 1 37 212 1 175 2.04e-73 229
Msa0372940 MtrunA17_Chr1g0186271 34.226 336 156 9 127 456 10 286 7.57e-50 172
Msa0372940 MtrunA17_Chr7g0268941 41.722 151 82 2 318 462 16 166 4.66e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372940 AT4G13930.1 90.658 471 44 0 1 471 1 471 0.0 902
Msa0372940 AT4G13890.1 78.541 466 100 0 1 466 1 466 0.0 794
Msa0372940 AT4G13890.2 79.540 391 80 0 1 391 1 391 0.0 672
Msa0372940 AT1G36370.1 63.305 466 166 1 4 464 130 595 0.0 635
Msa0372940 AT1G22020.2 62.284 464 170 1 4 462 134 597 0.0 624
Msa0372940 AT1G22020.1 62.284 464 170 1 4 462 134 597 0.0 624
Msa0372940 AT4G32520.2 59.785 465 168 6 3 461 77 528 0.0 572
Msa0372940 AT4G32520.1 59.785 465 168 6 3 461 77 528 0.0 572
Msa0372940 AT4G37930.1 57.479 468 192 4 9 471 52 517 0.0 561
Msa0372940 AT5G26780.1 56.410 468 197 4 9 471 52 517 0.0 545
Msa0372940 AT5G26780.4 56.410 468 197 4 9 471 52 517 0.0 545
Msa0372940 AT5G26780.2 54.545 484 197 5 9 471 52 533 0.0 535
Msa0372940 AT5G26780.3 54.545 484 197 5 9 471 52 533 0.0 535

Find 190 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTAGGTCGTGGATTTC+TGG 0.053246 3_1:+71804602 Msa0372930:three_prime_UTR
GGGATATAATGCTCTTATTT+TGG 0.135532 3_1:-71802832 Msa0372940:three_prime_UTR
ACTTCTCAACATCAGCTTTA+AGG 0.149316 3_1:+71802949 Msa0372930:three_prime_UTR
CAACAACCCATAAGAGTTTA+AGG 0.154381 3_1:-71803845 Msa0372940:CDS
TATCCGATAAATACAGAATT+TGG 0.178607 3_1:+71802626 Msa0372930:three_prime_UTR
GCTAATTAGAATTCATTAAT+TGG 0.204463 3_1:+71802678 Msa0372930:three_prime_UTR
TGGGACCCCTTAAACTCTTA+TGG 0.221123 3_1:+71803838 Msa0372930:three_prime_UTR
CCGTCCATTTGATACGATAT+TGG 0.231318 3_1:+71802565 Msa0372930:three_prime_UTR
TATCCTAGAGATTGGGATTA+TGG 0.237401 3_1:-71804077 Msa0372940:CDS
TTGCCAGGGTAGAGTCATTT+TGG 0.248530 3_1:+71802859 Msa0372930:three_prime_UTR
CTTTGAGAGTTTGCCGTATA+AGG 0.255272 3_1:-71804192 Msa0372940:CDS
AAATGTCTTGGCATGGATTC+AGG 0.270152 3_1:-71802530 Msa0372940:three_prime_UTR
CGTCCATTTGATACGATATT+GGG 0.282950 3_1:+71802566 Msa0372930:three_prime_UTR
TCCATCTCGACGCCGCCACC+TGG 0.291241 3_1:-71804382 Msa0372940:CDS
GTGCCCCAGCTATGACTTCC+AGG 0.297783 3_1:-71803112 Msa0372940:CDS
GTGTTTCCCCATTCACTAAC+TGG 0.306705 3_1:+71804644 Msa0372930:three_prime_UTR
TTGAAACAGGCCACCACGCC+TGG 0.308348 3_1:-71803657 Msa0372940:CDS
CCATACTCTTGCAGGCAATA+AGG 0.320283 3_1:-71803410 Msa0372940:intron
CTATTAGGTCGTGGATTTCT+GGG 0.321184 3_1:+71804603 Msa0372930:three_prime_UTR
GGGACCCCTTAAACTCTTAT+GGG 0.322732 3_1:+71803839 Msa0372930:three_prime_UTR
TTCTCAGGCTGACCCTTCTT+AGG 0.327500 3_1:+71803777 Msa0372930:three_prime_UTR
TGTTGGTGAGGGCGCTTCCT+AGG 0.327933 3_1:+71804501 Msa0372930:three_prime_UTR
TCTTGCTGTTGCTTTGAAAC+AGG 0.352836 3_1:-71803670 Msa0372940:CDS
CTAGAGATTCAAAAGGAATA+TGG 0.360286 3_1:-71803026 Msa0372940:CDS
ACTCATGGTTACTATACTTC+CGG 0.367102 3_1:-71804245 Msa0372940:CDS
AGCAAGGATACAAACATTAC+AGG 0.372800 3_1:+71802756 Msa0372930:three_prime_UTR
CGGGGTTTATTGATTATGAT+AGG 0.373858 3_1:-71804157 Msa0372940:CDS
TAGTGGCCTTGTTGCTGCTC+AGG 0.378762 3_1:-71803994 Msa0372940:intron
ACACCAAATTCTGTATTTAT+CGG 0.379125 3_1:-71802629 Msa0372940:three_prime_UTR
TGACCCTTCTTAGGTGGCTT+AGG 0.381473 3_1:+71803786 Msa0372930:three_prime_UTR
GGCCACCACGCCTGGGTTCA+AGG 0.389046 3_1:-71803649 Msa0372940:CDS
AGCTATGACTTCCAGGGGTC+TGG 0.390169 3_1:-71803105 Msa0372940:CDS
TAGGTTGGAGGAGAAAGCTT+TGG 0.396658 3_1:-71804138 Msa0372940:CDS
TCTGGGTCTACGGTTACTAA+TGG 0.398028 3_1:+71804620 Msa0372930:three_prime_UTR
TGTGATATGGCTCATATTAG+TGG 0.398072 3_1:-71804011 Msa0372940:CDS
TTCCGGTGGGAAGAAGATTT+CGG 0.399859 3_1:-71804228 Msa0372940:CDS
TGACTCTACCCTGGCAAGAT+GGG 0.405929 3_1:-71802853 Msa0372940:three_prime_UTR
CATTATATCCCCATCTTGCC+AGG 0.410134 3_1:+71802844 Msa0372930:three_prime_UTR
TGAAAATCATCTTGTCTTGT+GGG 0.412161 3_1:-71803541 Msa0372940:CDS
AGACCAAAGTTGATAATTTG+TGG 0.418304 3_1:-71804110 Msa0372940:CDS
CCATCTCGACGCCGCCACCT+GGG 0.419420 3_1:-71804381 Msa0372940:CDS
GCCGCCGTAGTAACGGTTAC+CGG 0.420593 3_1:+71804460 Msa0372930:three_prime_UTR
CATGCCTTCGGAATATTTGT+TGG 0.421243 3_1:+71804484 Msa0372930:three_prime_UTR
CCGTTCTCAATCCTCATGAT+AGG 0.429413 3_1:-71804304 Msa0372940:CDS
GTTTATTGATTATGATAGGT+TGG 0.431703 3_1:-71804153 Msa0372940:CDS
TAGGTGGCTTAGGTCCCTTC+CGG 0.432847 3_1:+71803796 Msa0372930:three_prime_UTR
CCACCACAAATTATCAACTT+TGG 0.434395 3_1:+71804107 Msa0372930:three_prime_UTR
TGCATTGGCCTTAACTTGCT+TGG 0.435848 3_1:+71803620 Msa0372930:three_prime_UTR
TTGTGGGATCTCCGCCCTCT+TGG 0.438255 3_1:-71803525 Msa0372940:CDS
GGGACCTAAGCCACCTAAGA+AGG 0.441492 3_1:-71803790 Msa0372940:CDS
CTCCGCCCTCTTGGCTTGAC+CGG 0.443426 3_1:-71803516 Msa0372940:intron
GAAGTGCTTATCCTAGAGAT+TGG 0.443642 3_1:-71804085 Msa0372940:CDS
AAATCATAAACTGCATTCTC+AGG 0.445883 3_1:+71803762 Msa0372930:three_prime_UTR
TTCGGAATATTTGTTGGTGA+GGG 0.446564 3_1:+71804490 Msa0372930:three_prime_UTR
GATTCAGGGTTCATTTAGAA+AGG 0.449333 3_1:-71802515 Msa0372940:three_prime_UTR
AAATATTCCGAAGGCATGCC+CGG 0.451502 3_1:-71804479 Msa0372940:CDS
CCTTGGCACCTGGAGGAGTC+AGG 0.451905 3_1:-71803321 Msa0372940:CDS
GTTCGATTCCGCGGCATTGA+CGG 0.453190 3_1:+71804567 Msa0372930:three_prime_UTR
TCAGCATCATTTGATATGCC+TGG 0.454342 3_1:-71802924 Msa0372940:CDS
AACAACCCATAAGAGTTTAA+GGG 0.454960 3_1:-71803844 Msa0372940:CDS
CAATCCTCATGATAGGATCA+TGG 0.456642 3_1:-71804297 Msa0372940:CDS
CAATGGATCCAGTTAGTGAA+TGG 0.456981 3_1:-71804652 Msa0372940:CDS
AATGTCTTGGCATGGATTCA+GGG 0.460379 3_1:-71802529 Msa0372940:three_prime_UTR
GGCCTATGCCAAGCAAGTTA+AGG 0.461054 3_1:-71803628 Msa0372940:CDS
TTGGCATAGGCCTTGAACCC+AGG 0.465093 3_1:+71803639 Msa0372930:three_prime_UTR
GTTGGTGAGGGCGCTTCCTA+GGG 0.465658 3_1:+71804502 Msa0372930:three_prime_UTR
CTGAAAATCATCTTGTCTTG+TGG 0.469345 3_1:-71803542 Msa0372940:CDS
GTCCTTCTCAACCAGACCCC+TGG 0.471209 3_1:+71803094 Msa0372930:three_prime_UTR
GGCGAAATTCGCCGGTGAGC+CGG 0.471948 3_1:+71804337 Msa0372930:three_prime_UTR
ATGACTCTACCCTGGCAAGA+TGG 0.474178 3_1:-71802854 Msa0372940:three_prime_UTR
TTACCAATCCTGACTCCTCC+AGG 0.477314 3_1:+71803313 Msa0372930:intron
GATAGTAGTGCCTTGGCACC+TGG 0.479436 3_1:-71803331 Msa0372940:CDS
AGACCCCTGGAAGTCATAGC+TGG 0.480209 3_1:+71803107 Msa0372930:three_prime_UTR
GTCGTGGATTTCTGGGTCTA+CGG 0.480956 3_1:+71804610 Msa0372930:three_prime_UTR
ATAAAAGCATTCAAATGTCT+TGG 0.481987 3_1:-71802542 Msa0372940:three_prime_UTR
ACGGTTACCGGGCATGCCTT+CGG 0.482851 3_1:+71804472 Msa0372930:three_prime_UTR
CAACAGCAAGAGCACCAATC+TGG 0.482879 3_1:+71803682 Msa0372930:three_prime_UTR
AATGGATCCAGTTAGTGAAT+GGG 0.485642 3_1:-71804651 Msa0372940:CDS
CCCAGGTGGCGGCGTCGAGA+TGG 0.488002 3_1:+71804381 Msa0372930:three_prime_UTR
AAGTGCTTATCCTAGAGATT+GGG 0.489191 3_1:-71804084 Msa0372940:CDS
ACAATGTCACAGAACTCAAA+AGG 0.494655 3_1:+71803873 Msa0372930:three_prime_UTR
AGTTTAAGGGGTCCCAGGGC+TGG 0.495042 3_1:-71803831 Msa0372940:CDS
AGCTCAGACACTAGGAATCC+AGG 0.498066 3_1:+71802906 Msa0372930:three_prime_UTR
TTCGCCGGTGAGCCGGAGTA+AGG 0.500155 3_1:+71804344 Msa0372930:three_prime_UTR
GTGGTCGAATTCACCTTATA+CGG 0.500256 3_1:+71804179 Msa0372930:three_prime_UTR
AACGTTGACACCCCAGGTGG+CGG 0.500618 3_1:+71804370 Msa0372930:three_prime_UTR
GGTGTGTCACGAAAATTTAG+TGG 0.504475 3_1:+71802647 Msa0372930:three_prime_UTR
ATAAGAGTTTAAGGGGTCCC+AGG 0.506409 3_1:-71803836 Msa0372940:CDS
ATTTCCAAGTGCAACTGCAT+TGG 0.507929 3_1:+71803605 Msa0372930:three_prime_UTR
GGCCTTAACTTGCTTGGCAT+AGG 0.510929 3_1:+71803626 Msa0372930:three_prime_UTR
GTGTAAGCGGCGAAATTCGC+CGG 0.512076 3_1:+71804329 Msa0372930:three_prime_UTR
AAGGCCAATGCAGTTGCACT+TGG 0.514829 3_1:-71803609 Msa0372940:CDS
TTCCAGGGGTCTGGTTGAGA+AGG 0.515430 3_1:-71803096 Msa0372940:CDS
ATGGGACTGGATCTACCTTC+TGG 0.519276 3_1:-71804278 Msa0372940:CDS
CTTCGGAATATTTGTTGGTG+AGG 0.520695 3_1:+71804489 Msa0372930:three_prime_UTR
CTTCCATAATCCCAATCTCT+AGG 0.521993 3_1:+71804074 Msa0372930:three_prime_UTR
CTAGAGATTGGGATTATGGA+AGG 0.522411 3_1:-71804073 Msa0372940:CDS
AGCATTCAAATGTCTTGGCA+TGG 0.523782 3_1:-71802537 Msa0372940:three_prime_UTR
TGGAAATTACTTGATGAGCA+AGG 0.526987 3_1:-71803589 Msa0372940:CDS
CTTCATCGATTCATTCACAA+TGG 0.529216 3_1:-71804669 Msa0372940:exon
TCTCACACTAGAGATTCAAA+AGG 0.529312 3_1:-71803033 Msa0372940:CDS
TGCCCCAGCTATGACTTCCA+GGG 0.531621 3_1:-71803111 Msa0372940:CDS
TCAGGCTGACCCTTCTTAGG+TGG 0.531885 3_1:+71803780 Msa0372930:three_prime_UTR
TCTGGTGGACATTTGACTCA+TGG 0.533259 3_1:-71804260 Msa0372940:CDS
GACCCCTGGAAGTCATAGCT+GGG 0.538130 3_1:+71803108 Msa0372930:three_prime_UTR
TCATGATAGGATCATGGGAC+TGG 0.541625 3_1:-71804291 Msa0372940:CDS
GGAAATTACTTGATGAGCAA+GGG 0.546759 3_1:-71803588 Msa0372940:CDS
GGTCCTCACAACCACCAGAT+TGG 0.554648 3_1:-71803696 Msa0372940:CDS
CCTGACTCCTCCAGGTGCCA+AGG 0.555521 3_1:+71803321 Msa0372930:three_prime_UTR
ATTCGTTGCCGCCGTAGTAA+CGG 0.556361 3_1:+71804453 Msa0372930:three_prime_UTR
GTGTGTCACGAAAATTTAGT+GGG 0.556805 3_1:+71802648 Msa0372930:three_prime_UTR
GGTGGCGGCGTCGAGATGGA+AGG 0.558501 3_1:+71804385 Msa0372930:three_prime_UTR
GTGAGGACCACCCTGAAGGG+AGG 0.560471 3_1:+71803710 Msa0372930:three_prime_UTR
GTAGAAGATCATACCAGCCC+TGG 0.560560 3_1:+71803818 Msa0372930:three_prime_UTR
AATCCTCATGATAGGATCAT+GGG 0.561616 3_1:-71804296 Msa0372940:CDS
CCGCCGTAGTAACGGTTACC+GGG 0.564640 3_1:+71804461 Msa0372930:three_prime_UTR
GCACCTGGAGGAGTCAGGAT+TGG 0.566548 3_1:-71803316 Msa0372940:intron
TATTGATTATGATAGGTTGG+AGG 0.566772 3_1:-71804150 Msa0372940:CDS
TGAAACAGGCCACCACGCCT+GGG 0.567620 3_1:-71803656 Msa0372940:CDS
CATCTCGACGCCGCCACCTG+GGG 0.569527 3_1:-71804380 Msa0372940:CDS
TGTACTTTAGCTCAGACACT+AGG 0.569790 3_1:+71802898 Msa0372930:three_prime_UTR
AGCCGAAATCTTCTTCCCAC+CGG 0.572971 3_1:+71804226 Msa0372930:three_prime_UTR
TGAGGACCACCCTGAAGGGA+GGG 0.581330 3_1:+71803711 Msa0372930:three_prime_UTR
GGCTTCAATGACTGCGAAGG+AGG 0.581885 3_1:+71804523 Msa0372930:three_prime_UTR
GGCCTTGAACCCAGGCGTGG+TGG 0.582420 3_1:+71803647 Msa0372930:three_prime_UTR
GGGCTGGTATGATCTTCTAC+CGG 0.582673 3_1:-71803815 Msa0372940:CDS
AGTGTCTGAGCTAAAGTACA+AGG 0.584233 3_1:-71802895 Msa0372940:CDS
TTCGCAGTCATTGAAGCCCT+AGG 0.584856 3_1:-71804518 Msa0372940:CDS
TACTCTTGCAGGCAATAAGG+TGG 0.588895 3_1:-71803407 Msa0372940:intron
AGGCGGTGAGAGCGCGTGAG+CGG 0.589839 3_1:+71804405 Msa0372930:three_prime_UTR
AAGGGATACAGTCTTGTCAC+TGG 0.593253 3_1:-71803570 Msa0372940:CDS
GACTCTACCCTGGCAAGATG+GGG 0.594221 3_1:-71802852 Msa0372940:three_prime_UTR
TGGTATGATCTTCTACCGGA+AGG 0.596236 3_1:-71803811 Msa0372940:CDS
GAGGACCACCCTGAAGGGAG+GGG 0.597307 3_1:+71803712 Msa0372930:three_prime_UTR
TATAAGGTGAATTCGACCAC+GGG 0.598190 3_1:-71804176 Msa0372940:CDS
ATTGAGAACGGCGGTGTAAG+CGG 0.599009 3_1:+71804316 Msa0372930:three_prime_UTR
GAATGAATCGATGAAGAATG+TGG 0.600571 3_1:+71804676 Msa0372930:three_prime_UTR
TGAGAGTTACTGCACGGTGA+AGG 0.602137 3_1:+71803051 Msa0372930:three_prime_UTR
GGACTGGATCTACCTTCTGG+TGG 0.603220 3_1:-71804275 Msa0372940:CDS
CCAAAGTTGATAATTTGTGG+TGG 0.604242 3_1:-71804107 Msa0372940:CDS
TAAGAGTTTAAGGGGTCCCA+GGG 0.604324 3_1:-71803835 Msa0372940:CDS
TAGAAGATCATACCAGCCCT+GGG 0.606806 3_1:+71803819 Msa0372930:three_prime_UTR
CCAATATCGTATCAAATGGA+CGG 0.607038 3_1:-71802565 Msa0372940:three_prime_UTR
GCACCAATCTGGTGGTTGTG+AGG 0.609752 3_1:+71803693 Msa0372930:three_prime_UTR
GTTGTGAGGACCACCCTGAA+GGG 0.610275 3_1:+71803707 Msa0372930:three_prime_UTR
GTCAACGTTCAACCTTACTC+CGG 0.614352 3_1:-71804356 Msa0372940:CDS
TAGGGCTTCAATGACTGCGA+AGG 0.618421 3_1:+71804520 Msa0372930:three_prime_UTR
GTCCATTTGATACGATATTG+GGG 0.619248 3_1:+71802567 Msa0372930:three_prime_UTR
GCCCCAGCTATGACTTCCAG+GGG 0.620989 3_1:-71803110 Msa0372940:CDS
ACAACCCATAAGAGTTTAAG+GGG 0.623565 3_1:-71803843 Msa0372940:CDS
ATGGATCCAGTTAGTGAATG+GGG 0.624625 3_1:-71804650 Msa0372940:CDS
GTTTACCGGTCAAGCCAAGA+GGG 0.625923 3_1:+71803511 Msa0372930:intron
GCAAGGATACAAACATTACA+GGG 0.629133 3_1:+71802757 Msa0372930:three_prime_UTR
GGACCTAAGCCACCTAAGAA+GGG 0.629365 3_1:-71803789 Msa0372940:CDS
CATGGTTACTATACTTCCGG+TGG 0.629951 3_1:-71804242 Msa0372940:CDS
GGTATGATCTTCTACCGGAA+GGG 0.631495 3_1:-71803810 Msa0372940:CDS
ACATAACAACAATAAACTCA+AGG 0.634786 3_1:+71802593 Msa0372930:three_prime_UTR
ATAGGCCTTGAACCCAGGCG+TGG 0.634867 3_1:+71803644 Msa0372930:three_prime_UTR
TGTTCACAGTAATGTTACAG+AGG 0.637542 3_1:+71803371 Msa0372930:three_prime_UTR
AGAAATTCAATATAACAGCA+AGG 0.640059 3_1:+71802740 Msa0372930:intron
TCAACCTTACTCCGGCTCAC+CGG 0.640516 3_1:-71804348 Msa0372940:CDS
TGAGTCAAATGTCCACCAGA+AGG 0.641882 3_1:+71804263 Msa0372930:three_prime_UTR
AGGTTGAACGTTGACACCCC+AGG 0.642017 3_1:+71804364 Msa0372930:three_prime_UTR
GGTTGTGAGGACCACCCTGA+AGG 0.642881 3_1:+71803706 Msa0372930:three_prime_UTR
ATGCCCGGTAACCGTTACTA+CGG 0.643010 3_1:-71804464 Msa0372940:CDS
GGCGGCGTCGAGATGGAAGG+CGG 0.644858 3_1:+71804388 Msa0372930:three_prime_UTR
CAGCAAGAGCACCAATCTGG+TGG 0.647474 3_1:+71803685 Msa0372930:three_prime_UTR
CCCGGTAACCGTTACTACGG+CGG 0.648521 3_1:-71804461 Msa0372940:CDS
CTCACCAACAAATATTCCGA+AGG 0.651545 3_1:-71804488 Msa0372940:CDS
CTTCCAAAATGACTCTACCC+TGG 0.655628 3_1:-71802862 Msa0372940:three_prime_UTR
AGGCAATGAGTTCGATTCCG+CGG 0.655674 3_1:+71804558 Msa0372930:three_prime_UTR
CCTATCATGAGGATTGAGAA+CGG 0.656550 3_1:+71804304 Msa0372930:three_prime_UTR
TACCGGTCAAGCCAAGAGGG+CGG 0.661729 3_1:+71803514 Msa0372930:intron
TCCATTTGATACGATATTGG+GGG 0.667002 3_1:+71802568 Msa0372930:three_prime_UTR
AGTTTACCGGTCAAGCCAAG+AGG 0.668683 3_1:+71803510 Msa0372930:intron
CAAAGAAAAGAGCACGACAG+TGG 0.676462 3_1:+71804702 Msa0372930:three_prime_UTR
ATTATATCCCCATCTTGCCA+GGG 0.676773 3_1:+71802845 Msa0372930:three_prime_UTR
ATAATACCTGAGCAGCAACA+AGG 0.680074 3_1:+71803988 Msa0372930:intron
CTAGTGTGAGAGTTACTGCA+CGG 0.681721 3_1:+71803045 Msa0372930:three_prime_UTR
AGTCCCATGATCCTATCATG+AGG 0.682957 3_1:+71804293 Msa0372930:three_prime_UTR
ACCCCTGGAAGTCATAGCTG+GGG 0.683408 3_1:+71803109 Msa0372930:three_prime_UTR
ATGGTTACTATACTTCCGGT+GGG 0.689475 3_1:-71804241 Msa0372940:CDS
AGTAGTGCCTTGGCACCTGG+AGG 0.689991 3_1:-71803328 Msa0372940:CDS
AGACAAGTTGCTGATAAGTG+TGG 0.694051 3_1:-71804047 Msa0372940:CDS
GTATAAGGTGAATTCGACCA+CGG 0.696614 3_1:-71804177 Msa0372940:CDS
ATCATAATCAATAAACCCCG+TGG 0.703727 3_1:+71804160 Msa0372930:three_prime_UTR
GGATACAGTCTTGTCACTGG+AGG 0.719260 3_1:-71803567 Msa0372940:CDS
ATAAGGTGAATTCGACCACG+GGG 0.760924 3_1:-71804175 Msa0372940:CDS
TTGAACGTTGACACCCCAGG+TGG 0.772161 3_1:+71804367 Msa0372930:three_prime_UTR
ATCATGAGGATTGAGAACGG+CGG 0.786132 3_1:+71804307 Msa0372930:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTAAAACAAAAACAA+TGG + chr3_1:71804459-71804478 Msa0372930:three_prime_UTR 10.0%
!!! TAAATTTAAAACAAAAACAA+TGG + chr3_1:71804459-71804478 Msa0372930:three_prime_UTR 10.0%
!! TCAAACAGAAATTCATTAAT+TGG + chr3_1:71804544-71804563 Msa0372930:three_prime_UTR 20.0%
!! GCTAATTAGAATTCATTAAT+TGG + chr3_1:71804572-71804591 Msa0372930:three_prime_UTR 20.0%
!! TCAAACAGAAATTCATTAAT+TGG + chr3_1:71804544-71804563 Msa0372930:three_prime_UTR 20.0%
!! GCTAATTAGAATTCATTAAT+TGG + chr3_1:71804572-71804591 Msa0372930:three_prime_UTR 20.0%
!! GTTTATTGATTATGATAGGT+TGG - chr3_1:71803094-71803113 Msa0372940:CDS 25.0%
!! CTCATTACTCATATGAATTT+TGG - chr3_1:71803299-71803318 Msa0372940:intron 25.0%
!! TTACGAGTTTATTAGTTTAC+CGG + chr3_1:71803753-71803772 Msa0372930:three_prime_UTR 25.0%
! TTGTGTTTGATTGTTAAAGT+TGG - chr3_1:71803790-71803809 Msa0372940:CDS 25.0%
! TGTGTTTGATTGTTAAAGTT+GGG - chr3_1:71803791-71803810 Msa0372940:CDS 25.0%
! ATCAAAACTTTGCATAAACA+AGG + chr3_1:71804050-71804069 Msa0372930:three_prime_UTR 25.0%
! AGAAATTCAATATAACAGCA+AGG + chr3_1:71804510-71804529 Msa0372930:three_prime_UTR 25.0%
! ACACCAAATTCTGTATTTAT+CGG - chr3_1:71804618-71804637 Msa0372940:CDS 25.0%
! TATCCGATAAATACAGAATT+TGG + chr3_1:71804624-71804643 Msa0372930:three_prime_UTR 25.0%
! ACATAACAACAATAAACTCA+AGG + chr3_1:71804657-71804676 Msa0372930:three_prime_UTR 25.0%
!!! ATAAAAGCATTCAAATGTCT+TGG - chr3_1:71804705-71804724 Msa0372940:five_prime_UTR 25.0%
!! GTTTATTGATTATGATAGGT+TGG - chr3_1:71803094-71803113 Msa0372940:CDS 25.0%
!! CTCATTACTCATATGAATTT+TGG - chr3_1:71803299-71803318 Msa0372940:intron 25.0%
!! TTACGAGTTTATTAGTTTAC+CGG + chr3_1:71803753-71803772 Msa0372930:three_prime_UTR 25.0%
! TTGTGTTTGATTGTTAAAGT+TGG - chr3_1:71803790-71803809 Msa0372940:CDS 25.0%
! TGTGTTTGATTGTTAAAGTT+GGG - chr3_1:71803791-71803810 Msa0372940:CDS 25.0%
! ATCAAAACTTTGCATAAACA+AGG + chr3_1:71804050-71804069 Msa0372930:three_prime_UTR 25.0%
! AGAAATTCAATATAACAGCA+AGG + chr3_1:71804510-71804529 Msa0372930:three_prime_UTR 25.0%
! ACACCAAATTCTGTATTTAT+CGG - chr3_1:71804618-71804637 Msa0372940:CDS 25.0%
! TATCCGATAAATACAGAATT+TGG + chr3_1:71804624-71804643 Msa0372930:three_prime_UTR 25.0%
! ACATAACAACAATAAACTCA+AGG + chr3_1:71804657-71804676 Msa0372930:three_prime_UTR 25.0%
!!! ATAAAAGCATTCAAATGTCT+TGG - chr3_1:71804705-71804724 Msa0372940:five_prime_UTR 25.0%
! TTTCTTTTTCTATTAGGTCG+TGG + chr3_1:71802656-71802675 Msa0372930:three_prime_UTR 30.0%
! GGCGTTTTTCTTTTTCTATT+AGG + chr3_1:71802662-71802681 Msa0372930:three_prime_UTR 30.0%
! TATTGATTATGATAGGTTGG+AGG - chr3_1:71803097-71803116 Msa0372940:CDS 30.0%
!! AGACCAAAGTTGATAATTTG+TGG - chr3_1:71803137-71803156 Msa0372940:intron 30.0%
AACAACCCATAAGAGTTTAA+GGG - chr3_1:71803403-71803422 Msa0372940:intron 30.0%
AAATCATAAACTGCATTCTC+AGG + chr3_1:71803488-71803507 Msa0372930:intron 30.0%
TGAAAATCATCTTGTCTTGT+GGG - chr3_1:71803706-71803725 Msa0372940:CDS 30.0%
GTGTTTGATTGTTAAAGTTG+GGG - chr3_1:71803792-71803811 Msa0372940:CDS 30.0%
TAAACAAGGACTTCCAATAT+TGG + chr3_1:71804036-71804055 Msa0372930:three_prime_UTR 30.0%
CTAGAGATTCAAAAGGAATA+TGG - chr3_1:71804221-71804240 Msa0372940:CDS 30.0%
! GGAATATGGTAAACTTTTGA+AGG - chr3_1:71804235-71804254 Msa0372940:CDS 30.0%
!! ACTTTTGAAGGATTTCAACA+AGG - chr3_1:71804247-71804266 Msa0372940:CDS 30.0%
!! CTTTTGAAGGATTTCAACAA+GGG - chr3_1:71804248-71804267 Msa0372940:CDS 30.0%
!! GGGATATAATGCTCTTATTT+TGG - chr3_1:71804415-71804434 Msa0372940:CDS 30.0%
!!! TCTTATTTTGGATGTCACAT+AGG - chr3_1:71804427-71804446 Msa0372940:CDS 30.0%
! TTTCTTTTTCTATTAGGTCG+TGG + chr3_1:71802656-71802675 Msa0372930:three_prime_UTR 30.0%
! GGCGTTTTTCTTTTTCTATT+AGG + chr3_1:71802662-71802681 Msa0372930:three_prime_UTR 30.0%
! TATTGATTATGATAGGTTGG+AGG - chr3_1:71803097-71803116 Msa0372940:CDS 30.0%
!! AGACCAAAGTTGATAATTTG+TGG - chr3_1:71803137-71803156 Msa0372940:intron 30.0%
AACAACCCATAAGAGTTTAA+GGG - chr3_1:71803403-71803422 Msa0372940:intron 30.0%
AAATCATAAACTGCATTCTC+AGG + chr3_1:71803488-71803507 Msa0372930:intron 30.0%
TGAAAATCATCTTGTCTTGT+GGG - chr3_1:71803706-71803725 Msa0372940:CDS 30.0%
GTGTTTGATTGTTAAAGTTG+GGG - chr3_1:71803792-71803811 Msa0372940:CDS 30.0%
TAAACAAGGACTTCCAATAT+TGG + chr3_1:71804036-71804055 Msa0372930:three_prime_UTR 30.0%
CTAGAGATTCAAAAGGAATA+TGG - chr3_1:71804221-71804240 Msa0372940:CDS 30.0%
! GGAATATGGTAAACTTTTGA+AGG - chr3_1:71804235-71804254 Msa0372940:CDS 30.0%
!! ACTTTTGAAGGATTTCAACA+AGG - chr3_1:71804247-71804266 Msa0372940:CDS 30.0%
!! CTTTTGAAGGATTTCAACAA+GGG - chr3_1:71804248-71804267 Msa0372940:CDS 30.0%
!! GGGATATAATGCTCTTATTT+TGG - chr3_1:71804415-71804434 Msa0372940:CDS 30.0%
!!! TCTTATTTTGGATGTCACAT+AGG - chr3_1:71804427-71804446 Msa0372940:CDS 30.0%
GAATGAATCGATGAAGAATG+TGG + chr3_1:71802574-71802593 Msa0372930:three_prime_UTR 35.0%
!! CTTCATCGATTCATTCACAA+TGG - chr3_1:71802578-71802597 Msa0372940:three_prime_UTR 35.0%
AATGGATCCAGTTAGTGAAT+GGG - chr3_1:71802596-71802615 Msa0372940:three_prime_UTR 35.0%
! TTCGGAATATTTGTTGGTGA+GGG + chr3_1:71802760-71802779 Msa0372930:three_prime_UTR 35.0%
AATCCTCATGATAGGATCAT+GGG - chr3_1:71802951-71802970 Msa0372940:CDS 35.0%
ACTCATGGTTACTATACTTC+CGG - chr3_1:71803002-71803021 Msa0372940:CDS 35.0%
ATCATAATCAATAAACCCCG+TGG + chr3_1:71803090-71803109 Msa0372930:three_prime_UTR 35.0%
! CGGGGTTTATTGATTATGAT+AGG - chr3_1:71803090-71803109 Msa0372940:CDS 35.0%
CCACCACAAATTATCAACTT+TGG + chr3_1:71803143-71803162 Msa0372930:intron 35.0%
!! CCAAAGTTGATAATTTGTGG+TGG - chr3_1:71803140-71803159 Msa0372940:intron 35.0%
AAGTGCTTATCCTAGAGATT+GGG - chr3_1:71803163-71803182 Msa0372940:intron 35.0%
TATCCTAGAGATTGGGATTA+TGG - chr3_1:71803170-71803189 Msa0372940:intron 35.0%
! TGCTCTTTTGCTTTGTGATA+TGG - chr3_1:71803223-71803242 Msa0372940:intron 35.0%
TGTGATATGGCTCATATTAG+TGG - chr3_1:71803236-71803255 Msa0372940:intron 35.0%
! AGTTACGTTTTTGTGGATAC+AGG - chr3_1:71803340-71803359 Msa0372940:CDS 35.0%
ACAATGTCACAGAACTCAAA+AGG + chr3_1:71803377-71803396 Msa0372930:three_prime_UTR 35.0%
CAACAACCCATAAGAGTTTA+AGG - chr3_1:71803402-71803421 Msa0372940:intron 35.0%
ACAACCCATAAGAGTTTAAG+GGG - chr3_1:71803404-71803423 Msa0372940:intron 35.0%
TGGAAATTACTTGATGAGCA+AGG - chr3_1:71803658-71803677 Msa0372940:CDS 35.0%
GGAAATTACTTGATGAGCAA+GGG - chr3_1:71803659-71803678 Msa0372940:CDS 35.0%
CTGAAAATCATCTTGTCTTG+TGG - chr3_1:71803705-71803724 Msa0372940:CDS 35.0%
! TGTATTTTCCATACTCTTGC+AGG - chr3_1:71803829-71803848 Msa0372940:CDS 35.0%
TGTTCACAGTAATGTTACAG+AGG + chr3_1:71803879-71803898 Msa0372930:three_prime_UTR 35.0%
!!! GTGAACAAGAATGCTGTTTT+TGG - chr3_1:71803892-71803911 Msa0372940:intron 35.0%
TCTCACACTAGAGATTCAAA+AGG - chr3_1:71804214-71804233 Msa0372940:CDS 35.0%
ACTTCTCAACATCAGCTTTA+AGG + chr3_1:71804301-71804320 Msa0372930:three_prime_UTR 35.0%
GCAAGGATACAAACATTACA+GGG + chr3_1:71804493-71804512 Msa0372930:three_prime_UTR 35.0%
AGCAAGGATACAAACATTAC+AGG + chr3_1:71804494-71804513 Msa0372930:three_prime_UTR 35.0%
GTGTGTCACGAAAATTTAGT+GGG + chr3_1:71804602-71804621 Msa0372930:three_prime_UTR 35.0%
TCCATTTGATACGATATTGG+GGG + chr3_1:71804682-71804701 Msa0372930:three_prime_UTR 35.0%
GTCCATTTGATACGATATTG+GGG + chr3_1:71804683-71804702 Msa0372930:three_prime_UTR 35.0%
CGTCCATTTGATACGATATT+GGG + chr3_1:71804684-71804703 Msa0372930:three_prime_UTR 35.0%
CCAATATCGTATCAAATGGA+CGG - chr3_1:71804682-71804701 Msa0372940:five_prime_UTR 35.0%
GATTCAGGGTTCATTTAGAA+AGG - chr3_1:71804732-71804751 Msa0372940:five_prime_UTR 35.0%
GAATGAATCGATGAAGAATG+TGG + chr3_1:71802574-71802593 Msa0372930:three_prime_UTR 35.0%
!! CTTCATCGATTCATTCACAA+TGG - chr3_1:71802578-71802597 Msa0372940:three_prime_UTR 35.0%
AATGGATCCAGTTAGTGAAT+GGG - chr3_1:71802596-71802615 Msa0372940:three_prime_UTR 35.0%
! TTCGGAATATTTGTTGGTGA+GGG + chr3_1:71802760-71802779 Msa0372930:three_prime_UTR 35.0%
AATCCTCATGATAGGATCAT+GGG - chr3_1:71802951-71802970 Msa0372940:CDS 35.0%
ACTCATGGTTACTATACTTC+CGG - chr3_1:71803002-71803021 Msa0372940:CDS 35.0%
ATCATAATCAATAAACCCCG+TGG + chr3_1:71803090-71803109 Msa0372930:three_prime_UTR 35.0%
! CGGGGTTTATTGATTATGAT+AGG - chr3_1:71803090-71803109 Msa0372940:CDS 35.0%
CCACCACAAATTATCAACTT+TGG + chr3_1:71803143-71803162 Msa0372930:intron 35.0%
!! CCAAAGTTGATAATTTGTGG+TGG - chr3_1:71803140-71803159 Msa0372940:intron 35.0%
AAGTGCTTATCCTAGAGATT+GGG - chr3_1:71803163-71803182 Msa0372940:intron 35.0%
TATCCTAGAGATTGGGATTA+TGG - chr3_1:71803170-71803189 Msa0372940:intron 35.0%
! TGCTCTTTTGCTTTGTGATA+TGG - chr3_1:71803223-71803242 Msa0372940:intron 35.0%
TGTGATATGGCTCATATTAG+TGG - chr3_1:71803236-71803255 Msa0372940:intron 35.0%
! AGTTACGTTTTTGTGGATAC+AGG - chr3_1:71803340-71803359 Msa0372940:CDS 35.0%
ACAATGTCACAGAACTCAAA+AGG + chr3_1:71803377-71803396 Msa0372930:three_prime_UTR 35.0%
CAACAACCCATAAGAGTTTA+AGG - chr3_1:71803402-71803421 Msa0372940:intron 35.0%
ACAACCCATAAGAGTTTAAG+GGG - chr3_1:71803404-71803423 Msa0372940:intron 35.0%
TGGAAATTACTTGATGAGCA+AGG - chr3_1:71803658-71803677 Msa0372940:CDS 35.0%
GGAAATTACTTGATGAGCAA+GGG - chr3_1:71803659-71803678 Msa0372940:CDS 35.0%
CTGAAAATCATCTTGTCTTG+TGG - chr3_1:71803705-71803724 Msa0372940:CDS 35.0%
! TGTATTTTCCATACTCTTGC+AGG - chr3_1:71803829-71803848 Msa0372940:CDS 35.0%
TGTTCACAGTAATGTTACAG+AGG + chr3_1:71803879-71803898 Msa0372930:three_prime_UTR 35.0%
!!! GTGAACAAGAATGCTGTTTT+TGG - chr3_1:71803892-71803911 Msa0372940:intron 35.0%
TCTCACACTAGAGATTCAAA+AGG - chr3_1:71804214-71804233 Msa0372940:CDS 35.0%
ACTTCTCAACATCAGCTTTA+AGG + chr3_1:71804301-71804320 Msa0372930:three_prime_UTR 35.0%
GCAAGGATACAAACATTACA+GGG + chr3_1:71804493-71804512 Msa0372930:three_prime_UTR 35.0%
AGCAAGGATACAAACATTAC+AGG + chr3_1:71804494-71804513 Msa0372930:three_prime_UTR 35.0%
GTGTGTCACGAAAATTTAGT+GGG + chr3_1:71804602-71804621 Msa0372930:three_prime_UTR 35.0%
TCCATTTGATACGATATTGG+GGG + chr3_1:71804682-71804701 Msa0372930:three_prime_UTR 35.0%
GTCCATTTGATACGATATTG+GGG + chr3_1:71804683-71804702 Msa0372930:three_prime_UTR 35.0%
CGTCCATTTGATACGATATT+GGG + chr3_1:71804684-71804703 Msa0372930:three_prime_UTR 35.0%
CCAATATCGTATCAAATGGA+CGG - chr3_1:71804682-71804701 Msa0372940:five_prime_UTR 35.0%
GATTCAGGGTTCATTTAGAA+AGG - chr3_1:71804732-71804751 Msa0372940:five_prime_UTR 35.0%
CAATGGATCCAGTTAGTGAA+TGG - chr3_1:71802595-71802614 Msa0372940:three_prime_UTR 40.0%
ATGGATCCAGTTAGTGAATG+GGG - chr3_1:71802597-71802616 Msa0372940:three_prime_UTR 40.0%
CTATTAGGTCGTGGATTTCT+GGG + chr3_1:71802647-71802666 Msa0372930:three_prime_UTR 40.0%
TCTATTAGGTCGTGGATTTC+TGG + chr3_1:71802648-71802667 Msa0372930:three_prime_UTR 40.0%
! GAAGGAGGTGAAATTTTCTG+AGG + chr3_1:71802712-71802731 Msa0372930:intron 40.0%
! CTTCGGAATATTTGTTGGTG+AGG + chr3_1:71802761-71802780 Msa0372930:three_prime_UTR 40.0%
CTCACCAACAAATATTCCGA+AGG - chr3_1:71802759-71802778 Msa0372940:three_prime_UTR 40.0%
CATGCCTTCGGAATATTTGT+TGG + chr3_1:71802766-71802785 Msa0372930:three_prime_UTR 40.0%
CCTATCATGAGGATTGAGAA+CGG + chr3_1:71802946-71802965 Msa0372930:three_prime_UTR 40.0%
CAATCCTCATGATAGGATCA+TGG - chr3_1:71802950-71802969 Msa0372940:CDS 40.0%
ATGGTTACTATACTTCCGGT+GGG - chr3_1:71803006-71803025 Msa0372940:CDS 40.0%
! CTTTGAGAGTTTGCCGTATA+AGG - chr3_1:71803055-71803074 Msa0372940:CDS 40.0%
GTGGTCGAATTCACCTTATA+CGG + chr3_1:71803071-71803090 Msa0372930:three_prime_UTR 40.0%
GTATAAGGTGAATTCGACCA+CGG - chr3_1:71803070-71803089 Msa0372940:CDS 40.0%
TATAAGGTGAATTCGACCAC+GGG - chr3_1:71803071-71803090 Msa0372940:CDS 40.0%
! GAAGTGCTTATCCTAGAGAT+TGG - chr3_1:71803162-71803181 Msa0372940:intron 40.0%
CTTCCATAATCCCAATCTCT+AGG + chr3_1:71803176-71803195 Msa0372930:intron 40.0%
CTAGAGATTGGGATTATGGA+AGG - chr3_1:71803174-71803193 Msa0372940:intron 40.0%
AGACAAGTTGCTGATAAGTG+TGG - chr3_1:71803200-71803219 Msa0372940:intron 40.0%
ATAATACCTGAGCAGCAACA+AGG + chr3_1:71803262-71803281 Msa0372930:intron 40.0%
TTGTTGCTGCTCAGGTATTA+TGG - chr3_1:71803261-71803280 Msa0372940:intron 40.0%
! GAGCTTGAGTTACGTTTTTG+TGG - chr3_1:71803333-71803352 Msa0372940:CDS 40.0%
!! TCTTGCTGTTGCTTTGAAAC+AGG - chr3_1:71803577-71803596 Msa0372940:CDS 40.0%
ATTTCCAAGTGCAACTGCAT+TGG + chr3_1:71803645-71803664 Msa0372930:three_prime_UTR 40.0%
!! TTTTGGTGATAGTAGTGCCT+TGG - chr3_1:71803909-71803928 Msa0372940:intron 40.0%
TGTCACCAGAAAGCCAATAT+TGG - chr3_1:71804020-71804039 Msa0372940:CDS 40.0%
!! GACTTCCAATATTGGCTTTC+TGG + chr3_1:71804028-71804047 Msa0372930:three_prime_UTR 40.0%
TGACATGAGCTTCTGTTAAC+AGG - chr3_1:71804113-71804132 Msa0372940:CDS 40.0%
TCAGCATCATTTGATATGCC+TGG - chr3_1:71804323-71804342 Msa0372940:CDS 40.0%
! TGTACTTTAGCTCAGACACT+AGG + chr3_1:71804352-71804371 Msa0372930:three_prime_UTR 40.0%
AGTGTCTGAGCTAAAGTACA+AGG - chr3_1:71804352-71804371 Msa0372940:CDS 40.0%
ATTATATCCCCATCTTGCCA+GGG + chr3_1:71804405-71804424 Msa0372930:three_prime_UTR 40.0%
GGTGTGTCACGAAAATTTAG+TGG + chr3_1:71804603-71804622 Msa0372930:three_prime_UTR 40.0%
TCCCCCAATATCGTATCAAA+TGG - chr3_1:71804678-71804697 Msa0372940:five_prime_UTR 40.0%
CCGTCCATTTGATACGATAT+TGG + chr3_1:71804685-71804704 Msa0372930:three_prime_UTR 40.0%
AGCATTCAAATGTCTTGGCA+TGG - chr3_1:71804710-71804729 Msa0372940:five_prime_UTR 40.0%
AAATGTCTTGGCATGGATTC+AGG - chr3_1:71804717-71804736 Msa0372940:five_prime_UTR 40.0%
AATGTCTTGGCATGGATTCA+GGG - chr3_1:71804718-71804737 Msa0372940:five_prime_UTR 40.0%
CAATGGATCCAGTTAGTGAA+TGG - chr3_1:71802595-71802614 Msa0372940:three_prime_UTR 40.0%
ATGGATCCAGTTAGTGAATG+GGG - chr3_1:71802597-71802616 Msa0372940:three_prime_UTR 40.0%
CTATTAGGTCGTGGATTTCT+GGG + chr3_1:71802647-71802666 Msa0372930:three_prime_UTR 40.0%
TCTATTAGGTCGTGGATTTC+TGG + chr3_1:71802648-71802667 Msa0372930:three_prime_UTR 40.0%
! GAAGGAGGTGAAATTTTCTG+AGG + chr3_1:71802712-71802731 Msa0372930:intron 40.0%
! CTTCGGAATATTTGTTGGTG+AGG + chr3_1:71802761-71802780 Msa0372930:three_prime_UTR 40.0%
CTCACCAACAAATATTCCGA+AGG - chr3_1:71802759-71802778 Msa0372940:three_prime_UTR 40.0%
CATGCCTTCGGAATATTTGT+TGG + chr3_1:71802766-71802785 Msa0372930:three_prime_UTR 40.0%
CCTATCATGAGGATTGAGAA+CGG + chr3_1:71802946-71802965 Msa0372930:three_prime_UTR 40.0%
CAATCCTCATGATAGGATCA+TGG - chr3_1:71802950-71802969 Msa0372940:CDS 40.0%
ATGGTTACTATACTTCCGGT+GGG - chr3_1:71803006-71803025 Msa0372940:CDS 40.0%
! CTTTGAGAGTTTGCCGTATA+AGG - chr3_1:71803055-71803074 Msa0372940:CDS 40.0%
GTGGTCGAATTCACCTTATA+CGG + chr3_1:71803071-71803090 Msa0372930:three_prime_UTR 40.0%
GTATAAGGTGAATTCGACCA+CGG - chr3_1:71803070-71803089 Msa0372940:CDS 40.0%
TATAAGGTGAATTCGACCAC+GGG - chr3_1:71803071-71803090 Msa0372940:CDS 40.0%
! GAAGTGCTTATCCTAGAGAT+TGG - chr3_1:71803162-71803181 Msa0372940:intron 40.0%
CTTCCATAATCCCAATCTCT+AGG + chr3_1:71803176-71803195 Msa0372930:intron 40.0%
CTAGAGATTGGGATTATGGA+AGG - chr3_1:71803174-71803193 Msa0372940:intron 40.0%
AGACAAGTTGCTGATAAGTG+TGG - chr3_1:71803200-71803219 Msa0372940:intron 40.0%
ATAATACCTGAGCAGCAACA+AGG + chr3_1:71803262-71803281 Msa0372930:intron 40.0%
TTGTTGCTGCTCAGGTATTA+TGG - chr3_1:71803261-71803280 Msa0372940:intron 40.0%
! GAGCTTGAGTTACGTTTTTG+TGG - chr3_1:71803333-71803352 Msa0372940:CDS 40.0%
!! TCTTGCTGTTGCTTTGAAAC+AGG - chr3_1:71803577-71803596 Msa0372940:CDS 40.0%
ATTTCCAAGTGCAACTGCAT+TGG + chr3_1:71803645-71803664 Msa0372930:three_prime_UTR 40.0%
!! TTTTGGTGATAGTAGTGCCT+TGG - chr3_1:71803909-71803928 Msa0372940:intron 40.0%
TGTCACCAGAAAGCCAATAT+TGG - chr3_1:71804020-71804039 Msa0372940:CDS 40.0%
!! GACTTCCAATATTGGCTTTC+TGG + chr3_1:71804028-71804047 Msa0372930:three_prime_UTR 40.0%
TGACATGAGCTTCTGTTAAC+AGG - chr3_1:71804113-71804132 Msa0372940:CDS 40.0%
TCAGCATCATTTGATATGCC+TGG - chr3_1:71804323-71804342 Msa0372940:CDS 40.0%
! TGTACTTTAGCTCAGACACT+AGG + chr3_1:71804352-71804371 Msa0372930:three_prime_UTR 40.0%
AGTGTCTGAGCTAAAGTACA+AGG - chr3_1:71804352-71804371 Msa0372940:CDS 40.0%
ATTATATCCCCATCTTGCCA+GGG + chr3_1:71804405-71804424 Msa0372930:three_prime_UTR 40.0%
GGTGTGTCACGAAAATTTAG+TGG + chr3_1:71804603-71804622 Msa0372930:three_prime_UTR 40.0%
TCCCCCAATATCGTATCAAA+TGG - chr3_1:71804678-71804697 Msa0372940:five_prime_UTR 40.0%
CCGTCCATTTGATACGATAT+TGG + chr3_1:71804685-71804704 Msa0372930:three_prime_UTR 40.0%
AGCATTCAAATGTCTTGGCA+TGG - chr3_1:71804710-71804729 Msa0372940:five_prime_UTR 40.0%
AAATGTCTTGGCATGGATTC+AGG - chr3_1:71804717-71804736 Msa0372940:five_prime_UTR 40.0%
AATGTCTTGGCATGGATTCA+GGG - chr3_1:71804718-71804737 Msa0372940:five_prime_UTR 40.0%
! CAAAGAAAAGAGCACGACAG+TGG + chr3_1:71802548-71802567 Msa0372930:intron 45.0%
GTGTTTCCCCATTCACTAAC+TGG + chr3_1:71802606-71802625 Msa0372930:three_prime_UTR 45.0%
TCTGGGTCTACGGTTACTAA+TGG + chr3_1:71802630-71802649 Msa0372930:three_prime_UTR 45.0%
! AAATATTCCGAAGGCATGCC+CGG - chr3_1:71802768-71802787 Msa0372940:three_prime_UTR 45.0%
! AGCGGCAAATGTTTTCGATC+TGG + chr3_1:71802827-71802846 Msa0372930:three_prime_UTR 45.0%
GTCAACGTTCAACCTTACTC+CGG - chr3_1:71802891-71802910 Msa0372940:CDS 45.0%
ATCATGAGGATTGAGAACGG+CGG + chr3_1:71802943-71802962 Msa0372930:three_prime_UTR 45.0%
CCGTTCTCAATCCTCATGAT+AGG - chr3_1:71802943-71802962 Msa0372940:CDS 45.0%
AGTCCCATGATCCTATCATG+AGG + chr3_1:71802957-71802976 Msa0372930:three_prime_UTR 45.0%
TCATGATAGGATCATGGGAC+TGG - chr3_1:71802956-71802975 Msa0372940:CDS 45.0%
TGAGTCAAATGTCCACCAGA+AGG + chr3_1:71802987-71803006 Msa0372930:three_prime_UTR 45.0%
! TCTGGTGGACATTTGACTCA+TGG - chr3_1:71802987-71803006 Msa0372940:CDS 45.0%
CATGGTTACTATACTTCCGG+TGG - chr3_1:71803005-71803024 Msa0372940:CDS 45.0%
TTCCGGTGGGAAGAAGATTT+CGG - chr3_1:71803019-71803038 Msa0372940:CDS 45.0%
ATAAGGTGAATTCGACCACG+GGG - chr3_1:71803072-71803091 Msa0372940:CDS 45.0%
! TAGGTTGGAGGAGAAAGCTT+TGG - chr3_1:71803109-71803128 Msa0372940:CDS 45.0%
GGGACCCCTTAAACTCTTAT+GGG + chr3_1:71803411-71803430 Msa0372930:intron 45.0%
TGGGACCCCTTAAACTCTTA+TGG + chr3_1:71803412-71803431 Msa0372930:intron 45.0%
ATAAGAGTTTAAGGGGTCCC+AGG - chr3_1:71803411-71803430 Msa0372940:intron 45.0%
TAAGAGTTTAAGGGGTCCCA+GGG - chr3_1:71803412-71803431 Msa0372940:intron 45.0%
TAGAAGATCATACCAGCCCT+GGG + chr3_1:71803431-71803450 Msa0372930:intron 45.0%
TGGTATGATCTTCTACCGGA+AGG - chr3_1:71803436-71803455 Msa0372940:intron 45.0%
GGTATGATCTTCTACCGGAA+GGG - chr3_1:71803437-71803456 Msa0372940:intron 45.0%
!! TGCATTGGCCTTAACTTGCT+TGG + chr3_1:71803630-71803649 Msa0372930:three_prime_UTR 45.0%
! AAGGGATACAGTCTTGTCAC+TGG - chr3_1:71803677-71803696 Msa0372940:CDS 45.0%
CCTTATTGCCTGCAAGAGTA+TGG + chr3_1:71803840-71803859 Msa0372930:three_prime_UTR 45.0%
CCATACTCTTGCAGGCAATA+AGG - chr3_1:71803837-71803856 Msa0372940:CDS 45.0%
TACTCTTGCAGGCAATAAGG+TGG - chr3_1:71803840-71803859 Msa0372940:CDS 45.0%
CTAGTGTGAGAGTTACTGCA+CGG + chr3_1:71804205-71804224 Msa0372930:three_prime_UTR 45.0%
CTTCCAAAATGACTCTACCC+TGG - chr3_1:71804385-71804404 Msa0372940:CDS 45.0%
! TTGCCAGGGTAGAGTCATTT+TGG + chr3_1:71804391-71804410 Msa0372930:three_prime_UTR 45.0%
CATTATATCCCCATCTTGCC+AGG + chr3_1:71804406-71804425 Msa0372930:three_prime_UTR 45.0%
! CAAAGAAAAGAGCACGACAG+TGG + chr3_1:71802548-71802567 Msa0372930:intron 45.0%
GTGTTTCCCCATTCACTAAC+TGG + chr3_1:71802606-71802625 Msa0372930:three_prime_UTR 45.0%
TCTGGGTCTACGGTTACTAA+TGG + chr3_1:71802630-71802649 Msa0372930:three_prime_UTR 45.0%
! AAATATTCCGAAGGCATGCC+CGG - chr3_1:71802768-71802787 Msa0372940:three_prime_UTR 45.0%
! AGCGGCAAATGTTTTCGATC+TGG + chr3_1:71802827-71802846 Msa0372930:three_prime_UTR 45.0%
GTCAACGTTCAACCTTACTC+CGG - chr3_1:71802891-71802910 Msa0372940:CDS 45.0%
ATCATGAGGATTGAGAACGG+CGG + chr3_1:71802943-71802962 Msa0372930:three_prime_UTR 45.0%
CCGTTCTCAATCCTCATGAT+AGG - chr3_1:71802943-71802962 Msa0372940:CDS 45.0%
AGTCCCATGATCCTATCATG+AGG + chr3_1:71802957-71802976 Msa0372930:three_prime_UTR 45.0%
TCATGATAGGATCATGGGAC+TGG - chr3_1:71802956-71802975 Msa0372940:CDS 45.0%
TGAGTCAAATGTCCACCAGA+AGG + chr3_1:71802987-71803006 Msa0372930:three_prime_UTR 45.0%
! TCTGGTGGACATTTGACTCA+TGG - chr3_1:71802987-71803006 Msa0372940:CDS 45.0%
CATGGTTACTATACTTCCGG+TGG - chr3_1:71803005-71803024 Msa0372940:CDS 45.0%
TTCCGGTGGGAAGAAGATTT+CGG - chr3_1:71803019-71803038 Msa0372940:CDS 45.0%
ATAAGGTGAATTCGACCACG+GGG - chr3_1:71803072-71803091 Msa0372940:CDS 45.0%
! TAGGTTGGAGGAGAAAGCTT+TGG - chr3_1:71803109-71803128 Msa0372940:CDS 45.0%
GGGACCCCTTAAACTCTTAT+GGG + chr3_1:71803411-71803430 Msa0372930:intron 45.0%
TGGGACCCCTTAAACTCTTA+TGG + chr3_1:71803412-71803431 Msa0372930:intron 45.0%
ATAAGAGTTTAAGGGGTCCC+AGG - chr3_1:71803411-71803430 Msa0372940:intron 45.0%
TAAGAGTTTAAGGGGTCCCA+GGG - chr3_1:71803412-71803431 Msa0372940:intron 45.0%
TAGAAGATCATACCAGCCCT+GGG + chr3_1:71803431-71803450 Msa0372930:intron 45.0%
TGGTATGATCTTCTACCGGA+AGG - chr3_1:71803436-71803455 Msa0372940:intron 45.0%
GGTATGATCTTCTACCGGAA+GGG - chr3_1:71803437-71803456 Msa0372940:intron 45.0%
!! TGCATTGGCCTTAACTTGCT+TGG + chr3_1:71803630-71803649 Msa0372930:three_prime_UTR 45.0%
! AAGGGATACAGTCTTGTCAC+TGG - chr3_1:71803677-71803696 Msa0372940:CDS 45.0%
CCTTATTGCCTGCAAGAGTA+TGG + chr3_1:71803840-71803859 Msa0372930:three_prime_UTR 45.0%
CCATACTCTTGCAGGCAATA+AGG - chr3_1:71803837-71803856 Msa0372940:CDS 45.0%
TACTCTTGCAGGCAATAAGG+TGG - chr3_1:71803840-71803859 Msa0372940:CDS 45.0%
CTAGTGTGAGAGTTACTGCA+CGG + chr3_1:71804205-71804224 Msa0372930:three_prime_UTR 45.0%
CTTCCAAAATGACTCTACCC+TGG - chr3_1:71804385-71804404 Msa0372940:CDS 45.0%
! TTGCCAGGGTAGAGTCATTT+TGG + chr3_1:71804391-71804410 Msa0372930:three_prime_UTR 45.0%
CATTATATCCCCATCTTGCC+AGG + chr3_1:71804406-71804425 Msa0372930:three_prime_UTR 45.0%
! GTCGTGGATTTCTGGGTCTA+CGG + chr3_1:71802640-71802659 Msa0372930:three_prime_UTR 50.0%
AGGCAATGAGTTCGATTCCG+CGG + chr3_1:71802692-71802711 Msa0372930:three_prime_UTR 50.0%
TAGGGCTTCAATGACTGCGA+AGG + chr3_1:71802730-71802749 Msa0372930:intron 50.0%
TTCGCAGTCATTGAAGCCCT+AGG - chr3_1:71802729-71802748 Msa0372940:intron 50.0%
ATGCCCGGTAACCGTTACTA+CGG - chr3_1:71802783-71802802 Msa0372940:three_prime_UTR 50.0%
ATTCGTTGCCGCCGTAGTAA+CGG + chr3_1:71802797-71802816 Msa0372930:three_prime_UTR 50.0%
ATTGAGAACGGCGGTGTAAG+CGG + chr3_1:71802934-71802953 Msa0372930:three_prime_UTR 50.0%
ATGGGACTGGATCTACCTTC+TGG - chr3_1:71802969-71802988 Msa0372940:CDS 50.0%
AGCCGAAATCTTCTTCCCAC+CGG + chr3_1:71803024-71803043 Msa0372930:three_prime_UTR 50.0%
GTAGAAGATCATACCAGCCC+TGG + chr3_1:71803432-71803451 Msa0372930:intron 50.0%
! GGGCTGGTATGATCTTCTAC+CGG - chr3_1:71803432-71803451 Msa0372940:intron 50.0%
GGACCTAAGCCACCTAAGAA+GGG - chr3_1:71803458-71803477 Msa0372940:intron 50.0%
TGACCCTTCTTAGGTGGCTT+AGG + chr3_1:71803464-71803483 Msa0372930:intron 50.0%
TTCTCAGGCTGACCCTTCTT+AGG + chr3_1:71803473-71803492 Msa0372930:intron 50.0%
!! CAACAGCAAGAGCACCAATC+TGG + chr3_1:71803568-71803587 Msa0372930:three_prime_UTR 50.0%
GGCCTATGCCAAGCAAGTTA+AGG - chr3_1:71803619-71803638 Msa0372940:CDS 50.0%
!! GGCCTTAACTTGCTTGGCAT+AGG + chr3_1:71803624-71803643 Msa0372930:three_prime_UTR 50.0%
AAGGCCAATGCAGTTGCACT+TGG - chr3_1:71803638-71803657 Msa0372940:CDS 50.0%
! GGATACAGTCTTGTCACTGG+AGG - chr3_1:71803680-71803699 Msa0372940:CDS 50.0%
GTTTACCGGTCAAGCCAAGA+GGG + chr3_1:71803739-71803758 Msa0372930:three_prime_UTR 50.0%
AGTTTACCGGTCAAGCCAAG+AGG + chr3_1:71803740-71803759 Msa0372930:three_prime_UTR 50.0%
TTACCAATCCTGACTCCTCC+AGG + chr3_1:71803937-71803956 Msa0372930:intron 50.0%
TGAGAGTTACTGCACGGTGA+AGG + chr3_1:71804199-71804218 Msa0372930:three_prime_UTR 50.0%
AGCTCAGACACTAGGAATCC+AGG + chr3_1:71804344-71804363 Msa0372930:three_prime_UTR 50.0%
ATGACTCTACCCTGGCAAGA+TGG - chr3_1:71804393-71804412 Msa0372940:CDS 50.0%
TGACTCTACCCTGGCAAGAT+GGG - chr3_1:71804394-71804413 Msa0372940:CDS 50.0%
! GTCGTGGATTTCTGGGTCTA+CGG + chr3_1:71802640-71802659 Msa0372930:three_prime_UTR 50.0%
AGGCAATGAGTTCGATTCCG+CGG + chr3_1:71802692-71802711 Msa0372930:three_prime_UTR 50.0%
TAGGGCTTCAATGACTGCGA+AGG + chr3_1:71802730-71802749 Msa0372930:intron 50.0%
TTCGCAGTCATTGAAGCCCT+AGG - chr3_1:71802729-71802748 Msa0372940:intron 50.0%
ATGCCCGGTAACCGTTACTA+CGG - chr3_1:71802783-71802802 Msa0372940:three_prime_UTR 50.0%
ATTCGTTGCCGCCGTAGTAA+CGG + chr3_1:71802797-71802816 Msa0372930:three_prime_UTR 50.0%
ATTGAGAACGGCGGTGTAAG+CGG + chr3_1:71802934-71802953 Msa0372930:three_prime_UTR 50.0%
ATGGGACTGGATCTACCTTC+TGG - chr3_1:71802969-71802988 Msa0372940:CDS 50.0%
AGCCGAAATCTTCTTCCCAC+CGG + chr3_1:71803024-71803043 Msa0372930:three_prime_UTR 50.0%
GTAGAAGATCATACCAGCCC+TGG + chr3_1:71803432-71803451 Msa0372930:intron 50.0%
! GGGCTGGTATGATCTTCTAC+CGG - chr3_1:71803432-71803451 Msa0372940:intron 50.0%
GGACCTAAGCCACCTAAGAA+GGG - chr3_1:71803458-71803477 Msa0372940:intron 50.0%
TGACCCTTCTTAGGTGGCTT+AGG + chr3_1:71803464-71803483 Msa0372930:intron 50.0%
TTCTCAGGCTGACCCTTCTT+AGG + chr3_1:71803473-71803492 Msa0372930:intron 50.0%
!! CAACAGCAAGAGCACCAATC+TGG + chr3_1:71803568-71803587 Msa0372930:three_prime_UTR 50.0%
GGCCTATGCCAAGCAAGTTA+AGG - chr3_1:71803619-71803638 Msa0372940:CDS 50.0%
!! GGCCTTAACTTGCTTGGCAT+AGG + chr3_1:71803624-71803643 Msa0372930:three_prime_UTR 50.0%
AAGGCCAATGCAGTTGCACT+TGG - chr3_1:71803638-71803657 Msa0372940:CDS 50.0%
! GGATACAGTCTTGTCACTGG+AGG - chr3_1:71803680-71803699 Msa0372940:CDS 50.0%
GTTTACCGGTCAAGCCAAGA+GGG + chr3_1:71803739-71803758 Msa0372930:three_prime_UTR 50.0%
AGTTTACCGGTCAAGCCAAG+AGG + chr3_1:71803740-71803759 Msa0372930:three_prime_UTR 50.0%
TTACCAATCCTGACTCCTCC+AGG + chr3_1:71803937-71803956 Msa0372930:intron 50.0%
TGAGAGTTACTGCACGGTGA+AGG + chr3_1:71804199-71804218 Msa0372930:three_prime_UTR 50.0%
AGCTCAGACACTAGGAATCC+AGG + chr3_1:71804344-71804363 Msa0372930:three_prime_UTR 50.0%
ATGACTCTACCCTGGCAAGA+TGG - chr3_1:71804393-71804412 Msa0372940:CDS 50.0%
TGACTCTACCCTGGCAAGAT+GGG - chr3_1:71804394-71804413 Msa0372940:CDS 50.0%
GAAAAACGCCGTCAATGCCG+CGG - chr3_1:71802672-71802691 Msa0372940:three_prime_UTR 55.0%
! GTTCGATTCCGCGGCATTGA+CGG + chr3_1:71802683-71802702 Msa0372930:three_prime_UTR 55.0%
GGCTTCAATGACTGCGAAGG+AGG + chr3_1:71802727-71802746 Msa0372930:intron 55.0%
TTGAACGTTGACACCCCAGG+TGG + chr3_1:71802883-71802902 Msa0372930:three_prime_UTR 55.0%
AGGTTGAACGTTGACACCCC+AGG + chr3_1:71802886-71802905 Msa0372930:three_prime_UTR 55.0%
TCAACCTTACTCCGGCTCAC+CGG - chr3_1:71802899-71802918 Msa0372940:CDS 55.0%
GTGTAAGCGGCGAAATTCGC+CGG + chr3_1:71802921-71802940 Msa0372930:three_prime_UTR 55.0%
GGACTGGATCTACCTTCTGG+TGG - chr3_1:71802972-71802991 Msa0372940:CDS 55.0%
!! TAGTGGCCTTGTTGCTGCTC+AGG - chr3_1:71803253-71803272 Msa0372940:intron 55.0%
TAGGTGGCTTAGGTCCCTTC+CGG + chr3_1:71803454-71803473 Msa0372930:intron 55.0%
GGGACCTAAGCCACCTAAGA+AGG - chr3_1:71803457-71803476 Msa0372940:intron 55.0%
TCAGGCTGACCCTTCTTAGG+TGG + chr3_1:71803470-71803489 Msa0372930:intron 55.0%
!!! TGCTGTTTTCCCCTCCCTTC+AGG - chr3_1:71803526-71803545 Msa0372940:CDS 55.0%
!! GCTGTTTTCCCCTCCCTTCA+GGG - chr3_1:71803527-71803546 Msa0372940:CDS 55.0%
GTTGTGAGGACCACCCTGAA+GGG + chr3_1:71803543-71803562 Msa0372930:three_prime_UTR 55.0%
GGTCCTCACAACCACCAGAT+TGG - chr3_1:71803551-71803570 Msa0372940:CDS 55.0%
GCACCAATCTGGTGGTTGTG+AGG + chr3_1:71803557-71803576 Msa0372930:three_prime_UTR 55.0%
!! CAGCAAGAGCACCAATCTGG+TGG + chr3_1:71803565-71803584 Msa0372930:three_prime_UTR 55.0%
TTGGCATAGGCCTTGAACCC+AGG + chr3_1:71803611-71803630 Msa0372930:three_prime_UTR 55.0%
GATAGTAGTGCCTTGGCACC+TGG - chr3_1:71803916-71803935 Msa0372940:intron 55.0%
TGCCCCAGCTATGACTTCCA+GGG - chr3_1:71804136-71804155 Msa0372940:CDS 55.0%
ACCCCTGGAAGTCATAGCTG+GGG + chr3_1:71804141-71804160 Msa0372930:three_prime_UTR 55.0%
GACCCCTGGAAGTCATAGCT+GGG + chr3_1:71804142-71804161 Msa0372930:three_prime_UTR 55.0%
AGACCCCTGGAAGTCATAGC+TGG + chr3_1:71804143-71804162 Msa0372930:three_prime_UTR 55.0%
AGCTATGACTTCCAGGGGTC+TGG - chr3_1:71804142-71804161 Msa0372940:CDS 55.0%
TTCCAGGGGTCTGGTTGAGA+AGG - chr3_1:71804151-71804170 Msa0372940:CDS 55.0%
GACTCTACCCTGGCAAGATG+GGG - chr3_1:71804395-71804414 Msa0372940:CDS 55.0%
GAAAAACGCCGTCAATGCCG+CGG - chr3_1:71802672-71802691 Msa0372940:three_prime_UTR 55.0%
! GTTCGATTCCGCGGCATTGA+CGG + chr3_1:71802683-71802702 Msa0372930:three_prime_UTR 55.0%
GGCTTCAATGACTGCGAAGG+AGG + chr3_1:71802727-71802746 Msa0372930:intron 55.0%
TTGAACGTTGACACCCCAGG+TGG + chr3_1:71802883-71802902 Msa0372930:three_prime_UTR 55.0%
AGGTTGAACGTTGACACCCC+AGG + chr3_1:71802886-71802905 Msa0372930:three_prime_UTR 55.0%
TCAACCTTACTCCGGCTCAC+CGG - chr3_1:71802899-71802918 Msa0372940:CDS 55.0%
GTGTAAGCGGCGAAATTCGC+CGG + chr3_1:71802921-71802940 Msa0372930:three_prime_UTR 55.0%
GGACTGGATCTACCTTCTGG+TGG - chr3_1:71802972-71802991 Msa0372940:CDS 55.0%
!! TAGTGGCCTTGTTGCTGCTC+AGG - chr3_1:71803253-71803272 Msa0372940:intron 55.0%
TAGGTGGCTTAGGTCCCTTC+CGG + chr3_1:71803454-71803473 Msa0372930:intron 55.0%
GGGACCTAAGCCACCTAAGA+AGG - chr3_1:71803457-71803476 Msa0372940:intron 55.0%
TCAGGCTGACCCTTCTTAGG+TGG + chr3_1:71803470-71803489 Msa0372930:intron 55.0%
!!! TGCTGTTTTCCCCTCCCTTC+AGG - chr3_1:71803526-71803545 Msa0372940:CDS 55.0%
!! GCTGTTTTCCCCTCCCTTCA+GGG - chr3_1:71803527-71803546 Msa0372940:CDS 55.0%
GTTGTGAGGACCACCCTGAA+GGG + chr3_1:71803543-71803562 Msa0372930:three_prime_UTR 55.0%
GGTCCTCACAACCACCAGAT+TGG - chr3_1:71803551-71803570 Msa0372940:CDS 55.0%
GCACCAATCTGGTGGTTGTG+AGG + chr3_1:71803557-71803576 Msa0372930:three_prime_UTR 55.0%
!! CAGCAAGAGCACCAATCTGG+TGG + chr3_1:71803565-71803584 Msa0372930:three_prime_UTR 55.0%
TTGGCATAGGCCTTGAACCC+AGG + chr3_1:71803611-71803630 Msa0372930:three_prime_UTR 55.0%
GATAGTAGTGCCTTGGCACC+TGG - chr3_1:71803916-71803935 Msa0372940:intron 55.0%
TGCCCCAGCTATGACTTCCA+GGG - chr3_1:71804136-71804155 Msa0372940:CDS 55.0%
ACCCCTGGAAGTCATAGCTG+GGG + chr3_1:71804141-71804160 Msa0372930:three_prime_UTR 55.0%
GACCCCTGGAAGTCATAGCT+GGG + chr3_1:71804142-71804161 Msa0372930:three_prime_UTR 55.0%
AGACCCCTGGAAGTCATAGC+TGG + chr3_1:71804143-71804162 Msa0372930:three_prime_UTR 55.0%
AGCTATGACTTCCAGGGGTC+TGG - chr3_1:71804142-71804161 Msa0372940:CDS 55.0%
TTCCAGGGGTCTGGTTGAGA+AGG - chr3_1:71804151-71804170 Msa0372940:CDS 55.0%
GACTCTACCCTGGCAAGATG+GGG - chr3_1:71804395-71804414 Msa0372940:CDS 55.0%
!! GTTGGTGAGGGCGCTTCCTA+GGG + chr3_1:71802748-71802767 Msa0372930:three_prime_UTR 60.0%
!! TGTTGGTGAGGGCGCTTCCT+AGG + chr3_1:71802749-71802768 Msa0372930:three_prime_UTR 60.0%
ACGGTTACCGGGCATGCCTT+CGG + chr3_1:71802778-71802797 Msa0372930:three_prime_UTR 60.0%
CCGCCGTAGTAACGGTTACC+GGG + chr3_1:71802789-71802808 Msa0372930:three_prime_UTR 60.0%
CCCGGTAACCGTTACTACGG+CGG - chr3_1:71802786-71802805 Msa0372940:three_prime_UTR 60.0%
GCCGCCGTAGTAACGGTTAC+CGG + chr3_1:71802790-71802809 Msa0372930:three_prime_UTR 60.0%
AACGTTGACACCCCAGGTGG+CGG + chr3_1:71802880-71802899 Msa0372930:three_prime_UTR 60.0%
AGTTTAAGGGGTCCCAGGGC+TGG - chr3_1:71803416-71803435 Msa0372940:intron 60.0%
! GTTTTCCCCTCCCTTCAGGG+TGG - chr3_1:71803530-71803549 Msa0372940:CDS 60.0%
TGAGGACCACCCTGAAGGGA+GGG + chr3_1:71803539-71803558 Msa0372930:three_prime_UTR 60.0%
GGTTGTGAGGACCACCCTGA+AGG + chr3_1:71803544-71803563 Msa0372930:three_prime_UTR 60.0%
TTGAAACAGGCCACCACGCC+TGG - chr3_1:71803590-71803609 Msa0372940:CDS 60.0%
TGAAACAGGCCACCACGCCT+GGG - chr3_1:71803591-71803610 Msa0372940:CDS 60.0%
ATAGGCCTTGAACCCAGGCG+TGG + chr3_1:71803606-71803625 Msa0372930:three_prime_UTR 60.0%
TTGTGGGATCTCCGCCCTCT+TGG - chr3_1:71803722-71803741 Msa0372940:CDS 60.0%
TACCGGTCAAGCCAAGAGGG+CGG + chr3_1:71803736-71803755 Msa0372930:three_prime_UTR 60.0%
AGTAGTGCCTTGGCACCTGG+AGG - chr3_1:71803919-71803938 Msa0372940:intron 60.0%
GCACCTGGAGGAGTCAGGAT+TGG - chr3_1:71803931-71803950 Msa0372940:intron 60.0%
GTGCCCCAGCTATGACTTCC+AGG - chr3_1:71804135-71804154 Msa0372940:CDS 60.0%
GCCCCAGCTATGACTTCCAG+GGG - chr3_1:71804137-71804156 Msa0372940:CDS 60.0%
GTCCTTCTCAACCAGACCCC+TGG + chr3_1:71804156-71804175 Msa0372930:three_prime_UTR 60.0%
!! GTTGGTGAGGGCGCTTCCTA+GGG + chr3_1:71802748-71802767 Msa0372930:three_prime_UTR 60.0%
!! TGTTGGTGAGGGCGCTTCCT+AGG + chr3_1:71802749-71802768 Msa0372930:three_prime_UTR 60.0%
ACGGTTACCGGGCATGCCTT+CGG + chr3_1:71802778-71802797 Msa0372930:three_prime_UTR 60.0%
CCGCCGTAGTAACGGTTACC+GGG + chr3_1:71802789-71802808 Msa0372930:three_prime_UTR 60.0%
CCCGGTAACCGTTACTACGG+CGG - chr3_1:71802786-71802805 Msa0372940:three_prime_UTR 60.0%
GCCGCCGTAGTAACGGTTAC+CGG + chr3_1:71802790-71802809 Msa0372930:three_prime_UTR 60.0%
AACGTTGACACCCCAGGTGG+CGG + chr3_1:71802880-71802899 Msa0372930:three_prime_UTR 60.0%
AGTTTAAGGGGTCCCAGGGC+TGG - chr3_1:71803416-71803435 Msa0372940:intron 60.0%
! GTTTTCCCCTCCCTTCAGGG+TGG - chr3_1:71803530-71803549 Msa0372940:CDS 60.0%
TGAGGACCACCCTGAAGGGA+GGG + chr3_1:71803539-71803558 Msa0372930:three_prime_UTR 60.0%
GGTTGTGAGGACCACCCTGA+AGG + chr3_1:71803544-71803563 Msa0372930:three_prime_UTR 60.0%
TTGAAACAGGCCACCACGCC+TGG - chr3_1:71803590-71803609 Msa0372940:CDS 60.0%
TGAAACAGGCCACCACGCCT+GGG - chr3_1:71803591-71803610 Msa0372940:CDS 60.0%
ATAGGCCTTGAACCCAGGCG+TGG + chr3_1:71803606-71803625 Msa0372930:three_prime_UTR 60.0%
TTGTGGGATCTCCGCCCTCT+TGG - chr3_1:71803722-71803741 Msa0372940:CDS 60.0%
TACCGGTCAAGCCAAGAGGG+CGG + chr3_1:71803736-71803755 Msa0372930:three_prime_UTR 60.0%
AGTAGTGCCTTGGCACCTGG+AGG - chr3_1:71803919-71803938 Msa0372940:intron 60.0%
GCACCTGGAGGAGTCAGGAT+TGG - chr3_1:71803931-71803950 Msa0372940:intron 60.0%
GTGCCCCAGCTATGACTTCC+AGG - chr3_1:71804135-71804154 Msa0372940:CDS 60.0%
GCCCCAGCTATGACTTCCAG+GGG - chr3_1:71804137-71804156 Msa0372940:CDS 60.0%
GTCCTTCTCAACCAGACCCC+TGG + chr3_1:71804156-71804175 Msa0372930:three_prime_UTR 60.0%
TTCGCCGGTGAGCCGGAGTA+AGG + chr3_1:71802906-71802925 Msa0372930:three_prime_UTR 65.0%
GGCGAAATTCGCCGGTGAGC+CGG + chr3_1:71802913-71802932 Msa0372930:three_prime_UTR 65.0%
GAGGACCACCCTGAAGGGAG+GGG + chr3_1:71803538-71803557 Msa0372930:three_prime_UTR 65.0%
GTGAGGACCACCCTGAAGGG+AGG + chr3_1:71803540-71803559 Msa0372930:three_prime_UTR 65.0%
! CTCCGCCCTCTTGGCTTGAC+CGG - chr3_1:71803731-71803750 Msa0372940:CDS 65.0%
CCTGACTCCTCCAGGTGCCA+AGG + chr3_1:71803929-71803948 Msa0372930:intron 65.0%
CCTTGGCACCTGGAGGAGTC+AGG - chr3_1:71803926-71803945 Msa0372940:intron 65.0%
TTCGCCGGTGAGCCGGAGTA+AGG + chr3_1:71802906-71802925 Msa0372930:three_prime_UTR 65.0%
GGCGAAATTCGCCGGTGAGC+CGG + chr3_1:71802913-71802932 Msa0372930:three_prime_UTR 65.0%
GAGGACCACCCTGAAGGGAG+GGG + chr3_1:71803538-71803557 Msa0372930:three_prime_UTR 65.0%
GTGAGGACCACCCTGAAGGG+AGG + chr3_1:71803540-71803559 Msa0372930:three_prime_UTR 65.0%
! CTCCGCCCTCTTGGCTTGAC+CGG - chr3_1:71803731-71803750 Msa0372940:CDS 65.0%
CCTGACTCCTCCAGGTGCCA+AGG + chr3_1:71803929-71803948 Msa0372930:intron 65.0%
CCTTGGCACCTGGAGGAGTC+AGG - chr3_1:71803926-71803945 Msa0372940:intron 65.0%
! AGGCGGTGAGAGCGCGTGAG+CGG + chr3_1:71802845-71802864 Msa0372930:three_prime_UTR 70.0%
! GGCGGCGTCGAGATGGAAGG+CGG + chr3_1:71802862-71802881 Msa0372930:three_prime_UTR 70.0%
! GGTGGCGGCGTCGAGATGGA+AGG + chr3_1:71802865-71802884 Msa0372930:three_prime_UTR 70.0%
TCCATCTCGACGCCGCCACC+TGG - chr3_1:71802865-71802884 Msa0372940:three_prime_UTR 70.0%
CCATCTCGACGCCGCCACCT+GGG - chr3_1:71802866-71802885 Msa0372940:three_prime_UTR 70.0%
CATCTCGACGCCGCCACCTG+GGG - chr3_1:71802867-71802886 Msa0372940:three_prime_UTR 70.0%
GGCCACCACGCCTGGGTTCA+AGG - chr3_1:71803598-71803617 Msa0372940:CDS 70.0%
GGCCTTGAACCCAGGCGTGG+TGG + chr3_1:71803603-71803622 Msa0372930:three_prime_UTR 70.0%
! AGGCGGTGAGAGCGCGTGAG+CGG + chr3_1:71802845-71802864 Msa0372930:three_prime_UTR 70.0%
! GGCGGCGTCGAGATGGAAGG+CGG + chr3_1:71802862-71802881 Msa0372930:three_prime_UTR 70.0%
! GGTGGCGGCGTCGAGATGGA+AGG + chr3_1:71802865-71802884 Msa0372930:three_prime_UTR 70.0%
TCCATCTCGACGCCGCCACC+TGG - chr3_1:71802865-71802884 Msa0372940:three_prime_UTR 70.0%
CCATCTCGACGCCGCCACCT+GGG - chr3_1:71802866-71802885 Msa0372940:three_prime_UTR 70.0%
CATCTCGACGCCGCCACCTG+GGG - chr3_1:71802867-71802886 Msa0372940:three_prime_UTR 70.0%
GGCCACCACGCCTGGGTTCA+AGG - chr3_1:71803598-71803617 Msa0372940:CDS 70.0%
GGCCTTGAACCCAGGCGTGG+TGG + chr3_1:71803603-71803622 Msa0372930:three_prime_UTR 70.0%
! CCCAGGTGGCGGCGTCGAGA+TGG + chr3_1:71802869-71802888 Msa0372930:three_prime_UTR 75.0%
! CCCAGGTGGCGGCGTCGAGA+TGG + chr3_1:71802869-71802888 Msa0372930:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71802505 71804764 71802505 ID=Msa0372940;Name=Msa0372940
chr3_1 mRNA 71802505 71804764 71802505 ID=Msa0372940-mRNA-1;Parent=Msa0372940;Name=Msa0372940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=92|1|1|1|0.75|0.6|5|357|471
chr3_1 exon 71802505 71802703 71802505 ID=Msa0372940-mRNA-1:exon:15869;Parent=Msa0372940-mRNA-1
chr3_1 exon 71802732 71803134 71802732 ID=Msa0372940-mRNA-1:exon:15868;Parent=Msa0372940-mRNA-1
chr3_1 exon 71803317 71803418 71803317 ID=Msa0372940-mRNA-1:exon:15867;Parent=Msa0372940-mRNA-1
chr3_1 exon 71803517 71803907 71803517 ID=Msa0372940-mRNA-1:exon:15866;Parent=Msa0372940-mRNA-1
chr3_1 exon 71803995 71804764 71803995 ID=Msa0372940-mRNA-1:exon:15865;Parent=Msa0372940-mRNA-1
chr3_1 five_prime_UTR 71804673 71804764 71804673 ID=Msa0372940-mRNA-1:five_prime_utr;Parent=Msa0372940-mRNA-1
chr3_1 CDS 71803995 71804672 71803995 ID=Msa0372940-mRNA-1:cds;Parent=Msa0372940-mRNA-1
chr3_1 CDS 71803517 71803907 71803517 ID=Msa0372940-mRNA-1:cds;Parent=Msa0372940-mRNA-1
chr3_1 CDS 71803317 71803418 71803317 ID=Msa0372940-mRNA-1:cds;Parent=Msa0372940-mRNA-1
chr3_1 CDS 71802890 71803134 71802890 ID=Msa0372940-mRNA-1:cds;Parent=Msa0372940-mRNA-1
chr3_1 three_prime_UTR 71802732 71802889 71802732 ID=Msa0372940-mRNA-1:three_prime_utr;Parent=Msa0372940-mRNA-1
chr3_1 three_prime_UTR 71802505 71802703 71802505 ID=Msa0372940-mRNA-1:three_prime_utr;Parent=Msa0372940-mRNA-1
Gene Sequence

>Msa0372940

ATGGATCCAGTTAGTGAATGGGGAAACACACCATTAGTAACCGTAGACCCAGAAATCCACGACCTAATAGAAAAAGAAAAACGCCGTCAATGCCGCGGAATCGAACTCATTGCCTCAGAAAATTTCACCTCCTTCGCAGTCATTGAAGCCCTAGGAAGCGCCCTCACCAACAAATATTCCGAAGGCATGCCCGGTAACCGTTACTACGGCGGCAACGAATTCATCGACCAGATCGAAAACATTTGCCGCTCACGCGCTCTCACCGCCTTCCATCTCGACGCCGCCACCTGGGGTGTCAACGTTCAACCTTACTCCGGCTCACCGGCGAATTTCGCCGCTTACACCGCCGTTCTCAATCCTCATGATAGGATCATGGGACTGGATCTACCTTCTGGTGGACATTTGACTCATGGTTACTATACTTCCGGTGGGAAGAAGATTTCGGCTACTTCGATTTACTTTGAGAGTTTGCCGTATAAGGTGAATTCGACCACGGGGTTTATTGATTATGATAGGTTGGAGGAGAAAGCTTTGGATTTTAGACCAAAGTTGATAATTTGTGGTGGAAGTGCTTATCCTAGAGATTGGGATTATGGAAGGTTTAGACAAGTTGCTGATAAGTGTGGTGCTCTTTTGCTTTGTGATATGGCTCATATTAGTGGCCTTGTTGCTGCTCAGGAAGCTAACAATCCTTTTGAGTTCTGTGACATTGTCACAACAACAACCCATAAGAGTTTAAGGGGTCCCAGGGCTGGTATGATCTTCTACCGGAAGGGACCTAAGCCACCTAAGAAGGGTCAGCCTGAGAATGCAGTTTATGATTTTGAAGACAAAATCAACTTTGCTGTTTTCCCCTCCCTTCAGGGTGGTCCTCACAACCACCAGATTGGTGCTCTTGCTGTTGCTTTGAAACAGGCCACCACGCCTGGGTTCAAGGCCTATGCCAAGCAAGTTAAGGCCAATGCAGTTGCACTTGGAAATTACTTGATGAGCAAGGGATACAGTCTTGTCACTGGAGGAACTGAAAATCATCTTGTCTTGTGGGATCTCCGCCCTCTTGGCTTGACCGGCAATAAGGTGGAAAAACTTTGTGACCTCTGTAACATTACTGTGAACAAGAATGCTGTTTTTGGTGATAGTAGTGCCTTGGCACCTGGAGGAGTCAGGATTGGTGCCCCAGCTATGACTTCCAGGGGTCTGGTTGAGAAGGACTTCGAGCAGATTGCAGAGTTCCTTCACCGTGCAGTAACTCTCACACTAGAGATTCAAAAGGAATATGGTAAACTTTTGAAGGATTTCAACAAGGGCTTAGTGAACAACAAAGCTCTTGAAGACCTTAAAGCTGATGTTGAGAAGTTTTCAGCATCATTTGATATGCCTGGATTCCTAGTGTCTGAGCTAAAGTACAAGGATTAG
Protein sequence

>Msa0372940

MDPVSEWGNTPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENICRSRALTAFHLDAATWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYGRFRQVADKCGALLLCDMAHISGLVAAQEANNPFEFCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQATTPGFKAYAKQVKANAVALGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIAEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKALEDLKADVEKFSASFDMPGFLVSELKYKD*