AlfalfaGEDB | Msa0494620

M. sativa cultivar zhongmu-4 / Msa0494620

KEGG: K05863|K20782
GO: GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
PFAM: PF00153.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494620	KEH33219.1	98.458	389	6	0	1	389	5	393	0.0	787

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494620	sp\|O22342\|ADT1_GOSHI	82.864	391	59	4	2	389	1	386	0.0	624

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494620	A0A072UTP5	98.458	389	6	0	1	389	5	393	0.0	787

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0180070	Msa0494620	0.826481	2.649082e-54	-8.615850e-47
Msa0260270	Msa0494620	0.801298	9.620160e-49	-8.615850e-47
Msa0372940	Msa0494620	0.811068	8.423879e-51	-8.615850e-47
Msa0447120	Msa0494620	0.902251	1.173336e-78	-8.615850e-47
Msa0494620	Msa0532790	0.845981	2.892679e-59	-8.615850e-47
Msa0494620	Msa0613170	0.803061	4.171774e-49	-8.615850e-47
Msa0494620	Msa0777460	0.823113	1.649569e-53	-8.615850e-47
Msa0494620	Msa0923260	0.843625	1.249237e-58	-8.615850e-47
Msa0494620	Msa0962190	0.843418	1.418513e-58	-8.615850e-47
Msa0494620	Msa0996830	0.822908	1.841768e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494620	MtrunA17_Chr3g0088301	98.458	389	6	0	1	389	1	389	0.0	786
Msa0494620	MtrunA17_Chr8g0352031	81.538	390	46	4	1	389	1	365	0.0	607
Msa0494620	MtrunA17_Chr4g0040341	74.615	390	77	3	1	388	1	370	0.0	543
Msa0494620	MtrunA17_Chr2g0328891	74.444	360	83	4	35	389	7	362	4.18e-178	499
Msa0494620	MtrunA17_Chr8g0393031	59.649	285	115	0	92	376	17	301	2.98e-128	371
Msa0494620	MtrunA17_Chr3g0135801	39.189	296	169	6	87	376	28	318	2.15e-67	216
Msa0494620	MtrunA17_Chr3g0135861	31.715	309	177	9	89	376	31	326	9.81e-36	134
Msa0494620	MtrunA17_Chr6g0488081	28.763	299	192	6	89	376	15	303	6.03e-33	125
Msa0494620	MtrunA17_Chr4g0006851	30.029	343	207	10	40	379	46	358	1.13e-28	115
Msa0494620	MtrunA17_Chr5g0396801	29.022	317	172	10	81	363	24	321	2.05e-28	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0494620	AT5G13490.1	81.170	393	62	5	1	389	1	385	0.0	607
Msa0494620	AT5G13490.2	81.170	393	62	5	1	389	1	385	0.0	607
Msa0494620	AT3G08580.2	82.188	393	54	6	1	389	1	381	0.0	591
Msa0494620	AT3G08580.1	82.188	393	54	6	1	389	1	381	0.0	591
Msa0494620	AT4G28390.1	74.936	391	81	4	2	388	1	378	0.0	548
Msa0494620	AT4G28390.2	74.936	391	81	4	2	388	1	378	0.0	548
Msa0494620	AT5G17400.1	58.804	301	124	0	80	380	1	301	6.59e-130	375
Msa0494620	AT5G56450.1	38.835	309	170	7	80	376	21	322	5.53e-66	213
Msa0494620	AT3G55640.1	28.037	321	213	7	58	368	1	313	2.58e-33	127
Msa0494620	AT3G55640.4	28.037	321	213	7	58	368	1	313	2.58e-33	127

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Find 165 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGATTTATTTGGAG+TGG	0.558044	3_4:+22891794	Msa0494620:three_prime_UTR
AAAAGAACAATGGCCGATGA+GGG	0.560661	3_4:+22890654	Msa0494620:CDS
AAAAGCTTAATACGTTCAAT+GGG	0.489695	3_4:-22890558	None:intergenic
AAATACCAAATGAATAAAAC+AGG	0.456337	3_4:-22892108	None:intergenic
AACACCTACTATCATCATAC+TGG	0.479860	3_4:-22891997	None:intergenic
AACAGTTGCCCTGCAAGTGG+GGG	0.584275	3_4:-22890409	None:intergenic
AACATCCTCCGAGCCGTTGC+TGG	0.344926	3_4:+22891533	Msa0494620:CDS
AACCAAAATTTAAAAGAGTT+TGG	0.219808	3_4:-22891756	None:intergenic
AACTTCAAGAAGGACAGGGA+TGG	0.606997	3_4:+22890867	Msa0494620:CDS
AAGAAGACTCTTGCTACTGA+TGG	0.508472	3_4:+22891056	Msa0494620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAGTTACAATTCTGTACT+TGG	+	chr3_4:22889561-22889580	Msa0494620:intron	30.0%
AATTGATCAAAGACTACATC+GGG	-	chr3_4:22889936-22889955	None:intergenic	30.0%
TGAGAAAGTCAATAACGAAA+TGG	-	chr3_4:22890497-22890516	None:intergenic	30.0%
CAAAAGCTTAATACGTTCAA+TGG	-	chr3_4:22890562-22890581	None:intergenic	30.0%
CATTCAAAGATTACTTCAAG+AGG	+	chr3_4:22890838-22890857	Msa0494620:CDS	30.0%
AAGAGAGTAAACAAACAAGA+GGG	-	chr3_4:22890949-22890968	None:intergenic	30.0%
AATACCAGTATGATGATAGT+AGG	+	chr3_4:22891993-22892012	Msa0494620:three_prime_UTR	30.0%
TAAACTAATGTCATGCTAAC+TGG	+	chr3_4:22892134-22892153	Msa0494620:three_prime_UTR	30.0%
CCAAAATAGCATACATATCA+TGG	-	chr3_4:22892239-22892258	None:intergenic	30.0%
CGTTCTACAACAAATATTAC+TGG	-	chr3_4:22892279-22892298	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	22889078	22892607	22889078	ID=Msa0494620;Name=Msa0494620
chr3_4	mRNA	22889078	22892607	22889078	ID=Msa0494620-mRNA-1;Parent=Msa0494620;Name=Msa0494620-mRNA-1;_AED=0.05;_eAED=0.05;_QI=88\|1\|1\|1\|0.66\|0.5\|4\|976\|389
chr3_4	exon	22889078	22889155	22889078	ID=Msa0494620-mRNA-1:exon:5682;Parent=Msa0494620-mRNA-1
chr3_4	exon	22890224	22890734	22890224	ID=Msa0494620-mRNA-1:exon:5683;Parent=Msa0494620-mRNA-1
chr3_4	exon	22890825	22891196	22890825	ID=Msa0494620-mRNA-1:exon:5684;Parent=Msa0494620-mRNA-1
chr3_4	exon	22891335	22892607	22891335	ID=Msa0494620-mRNA-1:exon:5685;Parent=Msa0494620-mRNA-1
chr3_4	five_prime_UTR	22889078	22889155	22889078	ID=Msa0494620-mRNA-1:five_prime_utr;Parent=Msa0494620-mRNA-1
chr3_4	five_prime_UTR	22890224	22890233	22890224	ID=Msa0494620-mRNA-1:five_prime_utr;Parent=Msa0494620-mRNA-1
chr3_4	CDS	22890234	22890734	22890234	ID=Msa0494620-mRNA-1:cds;Parent=Msa0494620-mRNA-1
chr3_4	CDS	22890825	22891196	22890825	ID=Msa0494620-mRNA-1:cds;Parent=Msa0494620-mRNA-1
chr3_4	CDS	22891335	22891631	22891335	ID=Msa0494620-mRNA-1:cds;Parent=Msa0494620-mRNA-1
chr3_4	three_prime_UTR	22891632	22892607	22891632	ID=Msa0494620-mRNA-1:three_prime_utr;Parent=Msa0494620-mRNA-1

Gene Sequence

>Msa0494620

ATGGTTGATCAGGTTAAGCAACCAACAATCATGGAGAAGGTCACTGGCCAGCTCCACCGTCGATCGGGTCTTTCATCTGGATTTAGGGGTTATGAAGGAACCTACCACCATCCTGCCATGTCCCAAAGATTCTCCTATGGGAACTACTCAAACGCTGCATTGCAGAATCCAATGGCCCCCACTTGCAGGGCAACTGTTGATTTGTCAGCTGTTGCAACAACTGCTTCTCCTGTCTTCGTCGCTGCTCCAGCAGAAAAGAGCCATTTCGTTATTGACTTTCTCATGGGTGGTGTTTCAGCTGCCGTTTCCAAAACTGCTGCTGCTCCCATTGAACGTATTAAGCTTTTGATCCAAAACCAGGATGAGATGATCAAGTCTGGTAGGCTATCTGAGCCCTACAAGGGTATTGGTGATTGTTTTAAAAGAACAATGGCCGATGAGGGTATTGTTGCTCTCTGGAGAGGAAACACTGCCAATGTTATCCGTTATTTCCCTACTCAGGCTTTGAACTTTGCATTCAAAGATTACTTCAAGAGGCTTTTCAACTTCAAGAAGGACAGGGATGGTTACTGGAAATGGTTTGCCGGTAACTTGGCATCCGGAGGTGCTGCTGGTGCCTCATCCCTCTTGTTTGTTTACTCTCTTGATTATGCCCGTACTCGTCTTGCCAATGATTCTAAGGCAGCTAAGAAAGGTGGAGAAAGGCAGTTCAATGGTCTTGTTGATGTCTACAAGAAGACTCTTGCTACTGATGGAATTGCTGGGCTTTACCGTGGTTTCAACATCTCCTGTGTTGGAATCATTGTTTACCGTGGTCTGTACTTCGGATTGTATGATTCCCTCAAACCAGTTCTTCTCACTGGAAAATTGCAGGATAGCTTTTTCGCCAGTTTTGCGCTTGGATGGCTCATTACCAATGGTGCAGGTCTAGCATCATACCCCATTGACACTGTTAGGAGAAGAATGATGATGACATCCGGAGAAGCTGTCAAGTACAAGAGTTCCTTTGATGCATTCCAACAAATCCTCAAGAATGAGGGTGCTAAGTCATTGTTCAAGGGAGCTGGTGCTAACATCCTCCGAGCCGTTGCTGGTGCTGGTGTGCTTTCTGGTTACGACAAGTTGCAGGTTCTTGTGTTCGGCAAGAAATACGGATCTGGTGGTGCTTAA

Protein sequence

>Msa0494620

MVDQVKQPTIMEKVTGQLHRRSGLSSGFRGYEGTYHHPAMSQRFSYGNYSNAALQNPMAPTCRATVDLSAVATTASPVFVAAPAEKSHFVIDFLMGGVSAAVSKTAAAPIERIKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMADEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYKKTLATDGIAGLYRGFNISCVGIIVYRGLYFGLYDSLKPVLLTGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFQQILKNEGAKSLFKGAGANILRAVAGAGVLSGYDKLQVLVFGKKYGSGGA*