AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0421440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421440 MtrunA17_Chr3g0121851 99.363 471 3 0 1 471 1 471 0.0 974
Msa0421440 MtrunA17_Chr8g0378091 94.268 471 27 0 1 471 1 471 0.0 935
Msa0421440 MtrunA17_Chr2g0277581 64.440 464 160 1 4 462 128 591 0.0 645
Msa0421440 MtrunA17_Chr3g0115291 64.425 461 156 2 7 462 118 575 0.0 638
Msa0421440 MtrunA17_Chr5g0411661 58.369 466 187 4 9 469 53 516 0.0 555
Msa0421440 MtrunA17_Chr5g0428001 57.602 467 189 5 9 469 42 505 0.0 551
Msa0421440 MtrunA17_Chr2g0285171 59.607 458 165 6 12 461 87 532 0.0 544
Msa0421440 MtrunA17_Chr7g0268951 63.636 176 63 1 37 212 1 175 2.04e-73 229
Msa0421440 MtrunA17_Chr1g0186271 34.226 336 156 9 127 456 10 286 7.57e-50 172
Msa0421440 MtrunA17_Chr7g0268941 41.722 151 82 2 318 462 16 166 4.66e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421440 AT4G13930.1 90.658 471 44 0 1 471 1 471 0.0 902
Msa0421440 AT4G13890.1 78.541 466 100 0 1 466 1 466 0.0 794
Msa0421440 AT4G13890.2 79.540 391 80 0 1 391 1 391 0.0 672
Msa0421440 AT1G36370.1 63.305 466 166 1 4 464 130 595 0.0 635
Msa0421440 AT1G22020.2 62.284 464 170 1 4 462 134 597 0.0 624
Msa0421440 AT1G22020.1 62.284 464 170 1 4 462 134 597 0.0 624
Msa0421440 AT4G32520.2 59.785 465 168 6 3 461 77 528 0.0 572
Msa0421440 AT4G32520.1 59.785 465 168 6 3 461 77 528 0.0 572
Msa0421440 AT4G37930.1 57.479 468 192 4 9 471 52 517 0.0 561
Msa0421440 AT5G26780.1 56.410 468 197 4 9 471 52 517 0.0 545
Msa0421440 AT5G26780.4 56.410 468 197 4 9 471 52 517 0.0 545
Msa0421440 AT5G26780.2 54.545 484 197 5 9 471 52 533 0.0 535
Msa0421440 AT5G26780.3 54.545 484 197 5 9 471 52 533 0.0 535

Find 184 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTAGGTCGTGGATTTC+TGG 0.101747 3_2:-70377158 Msa0421430:three_prime_UTR
GGGATATAATGCTCTTATTT+TGG 0.135532 3_2:+70378937 Msa0421440:three_prime_UTR
ACTTCTCAACATCAGCTTTA+AGG 0.149316 3_2:-70378810 Msa0421430:three_prime_UTR
CAACAACCCATAAGAGTTTA+AGG 0.154381 3_2:+70377915 Msa0421440:CDS
TAACCGATAAATACAGAATT+TGG 0.197215 3_2:-70379113 Msa0421430:three_prime_UTR
GCTAATTAGAATTCATTAAT+TGG 0.204463 3_2:-70379061 Msa0421430:three_prime_UTR
TGGGACCCCTTAAACTCTTA+TGG 0.221123 3_2:-70377922 Msa0421430:three_prime_UTR
TATCCTAGAGATTGGGATTA+TGG 0.237401 3_2:+70377683 Msa0421440:CDS
TTGCCAGGGTAGAGTCATTT+TGG 0.248530 3_2:-70378910 Msa0421430:three_prime_UTR
CTTTGAGAGTTTGCCGTATA+AGG 0.255272 3_2:+70377568 Msa0421440:CDS
CCGTCCATTTGATACGATAT+TGG 0.260283 3_2:-70379174 Msa0421430:three_prime_UTR
CGTCCATTTGATACGATATT+GGG 0.282950 3_2:-70379173 Msa0421430:three_prime_UTR
TCCATCTCGACGCCGCCACC+TGG 0.291241 3_2:+70377378 Msa0421440:CDS
GTGCCCCAGCTATGACTTCC+AGG 0.297783 3_2:+70378647 Msa0421440:CDS
GTGTTTCCCCATTCACTAAC+TGG 0.306705 3_2:-70377116 Msa0421430:three_prime_UTR
TTGAAACAGGCCACCACGCC+TGG 0.308348 3_2:+70378103 Msa0421440:CDS
CCATACTCTTGCAGGCAATA+AGG 0.320283 3_2:+70378349 Msa0421440:intron
GGGACCCCTTAAACTCTTAT+GGG 0.322732 3_2:-70377921 Msa0421430:three_prime_UTR
TGTTGGTGAGGGCGCTTCCT+AGG 0.327933 3_2:-70377259 Msa0421430:three_prime_UTR
ACACCAAATTCTGTATTTAT+CGG 0.338653 3_2:+70379110 Msa0421440:three_prime_UTR
TCTTGCTGTTGCTTTGAAAC+AGG 0.352836 3_2:+70378090 Msa0421440:CDS
CTAGAGATTCAAAAGGAATA+TGG 0.360286 3_2:+70378733 Msa0421440:CDS
TTCTCAGGCTGACCCTTCTT+AGG 0.365357 3_2:-70377983 Msa0421430:three_prime_UTR
ACTCATGGTTACTATACTTC+CGG 0.367102 3_2:+70377515 Msa0421440:CDS
CGGGGTTTATTGATTATGAT+AGG 0.373858 3_2:+70377603 Msa0421440:CDS
TAGTGGCCTTGTTGCTGCTC+AGG 0.378762 3_2:+70377766 Msa0421440:CDS
TGACCCTTCTTAGGTGGCTT+AGG 0.381473 3_2:-70377974 Msa0421430:three_prime_UTR
TCTGGATCTACGGTTACTAA+TGG 0.383442 3_2:-70377140 Msa0421430:three_prime_UTR
GGCCACCACGCCTGGGTTCA+AGG 0.389046 3_2:+70378111 Msa0421440:CDS
AGCTATGACTTCCAGGGGTC+TGG 0.390169 3_2:+70378654 Msa0421440:CDS
TGTGATATGGCTCATATTAG+TGG 0.398072 3_2:+70377749 Msa0421440:CDS
TTCCGGTGGGAAGAAGATTT+CGG 0.399859 3_2:+70377532 Msa0421440:CDS
TGACTCTACCCTGGCAAGAT+GGG 0.405929 3_2:+70378916 Msa0421440:three_prime_UTR
CATTATATCCCCATCTTGCC+AGG 0.410134 3_2:-70378925 Msa0421430:three_prime_UTR
TGAAAATCATCTTGTCTTGT+GGG 0.412161 3_2:+70378219 Msa0421440:CDS
AGACCAAAGTTGATTATTTG+TGG 0.418304 3_2:+70377650 Msa0421440:CDS
CCATCTCGACGCCGCCACCT+GGG 0.419420 3_2:+70377379 Msa0421440:CDS
GCCGCCGTAGTAACGGTTAC+CGG 0.420593 3_2:-70377300 Msa0421430:three_prime_UTR
CATGCCTTCGGAATATTTGT+TGG 0.421243 3_2:-70377276 Msa0421430:three_prime_UTR
CCGTTCTCAATCCTCATGAT+AGG 0.429413 3_2:+70377456 Msa0421440:CDS
TGAGCTAAAGTACAAGGATT+AGG 0.432392 3_2:+70378870 Msa0421440:CDS
TAGGTGGCTTAGGTCCCTTC+CGG 0.432847 3_2:-70377964 Msa0421430:three_prime_UTR
TGCATTGGCCTTAACTTGCT+TGG 0.435848 3_2:-70378140 Msa0421430:three_prime_UTR
TTGTGGGATCTCCGCCCTCT+TGG 0.438255 3_2:+70378235 Msa0421440:CDS
GGGACCTAAGCCACCTAAGA+AGG 0.441492 3_2:+70377970 Msa0421440:CDS
CTCCGCCCTCTTGGCTTGAC+CGG 0.443426 3_2:+70378244 Msa0421440:CDS
GAAGTGCTTATCCTAGAGAT+TGG 0.443642 3_2:+70377675 Msa0421440:CDS
TTCGGAATATTTGTTGGTGA+GGG 0.446564 3_2:-70377270 Msa0421430:three_prime_UTR
AAATATTCCGAAGGCATGCC+CGG 0.451502 3_2:+70377281 Msa0421440:CDS
CCTTGGCACCTGGAGGAGTC+AGG 0.451905 3_2:+70378438 Msa0421440:CDS
GTTCGATTCCGCGGCATTGA+CGG 0.453190 3_2:-70377193 Msa0421430:three_prime_UTR
TCAGCATCATTTGATATGCC+TGG 0.454342 3_2:+70378835 Msa0421440:CDS
TAGGTTGGAAGAGAAAGCTT+TGG 0.454657 3_2:+70377622 Msa0421440:CDS
AACAACCCATAAGAGTTTAA+GGG 0.454960 3_2:+70377916 Msa0421440:CDS
CAATCCTCATGATAGGATCA+TGG 0.456642 3_2:+70377463 Msa0421440:CDS
CAATGGATCCAGTTAGTGAA+TGG 0.456981 3_2:+70377108 Msa0421440:exon
GGCCTATGCCAAGCAAGTTA+AGG 0.461054 3_2:+70378132 Msa0421440:CDS
TTGGCATAGGCCTTGAACCC+AGG 0.465093 3_2:-70378121 Msa0421430:three_prime_UTR
GTTGGTGAGGGCGCTTCCTA+GGG 0.465658 3_2:-70377258 Msa0421430:three_prime_UTR
CTGAAAATCATCTTGTCTTG+TGG 0.469345 3_2:+70378218 Msa0421440:CDS
GTCGTGGATTTCTGGATCTA+CGG 0.469527 3_2:-70377150 Msa0421430:three_prime_UTR
GGTGTGTAACGAAAATTTAG+TGG 0.469869 3_2:-70379092 Msa0421430:three_prime_UTR
CCACCACAAATAATCAACTT+TGG 0.471153 3_2:-70377653 Msa0421430:three_prime_UTR
GTCCTTCTCAACCAGACCCC+TGG 0.471209 3_2:-70378665 Msa0421430:three_prime_UTR
GGCGAAATTCGCCGGTGAGC+CGG 0.471948 3_2:-70377423 Msa0421430:three_prime_UTR
ATGACTCTACCCTGGCAAGA+TGG 0.474178 3_2:+70378915 Msa0421440:three_prime_UTR
TTACCAATCCTGACTCCTCC+AGG 0.477314 3_2:-70378446 Msa0421430:intron
GATAGTAGTGCCTTGGCACC+TGG 0.479436 3_2:+70378428 Msa0421440:CDS
AGACCCCTGGAAGTCATAGC+TGG 0.480209 3_2:-70378652 Msa0421430:three_prime_UTR
ACGGTTACCGGGCATGCCTT+CGG 0.482851 3_2:-70377288 Msa0421430:three_prime_UTR
CAACAGCAAGAGCACCAATC+TGG 0.482879 3_2:-70378078 Msa0421430:three_prime_UTR
GTTTATTGATTATGATAGGT+TGG 0.485055 3_2:+70377607 Msa0421440:CDS
AATGGATCCAGTTAGTGAAT+GGG 0.485642 3_2:+70377109 Msa0421440:exon
CCCAGGTGGCGGCGTCGAGA+TGG 0.488002 3_2:-70377379 Msa0421430:three_prime_UTR
AAGTGCTTATCCTAGAGATT+GGG 0.489191 3_2:+70377676 Msa0421440:CDS
ACAATGTCACAGAACTCAAA+AGG 0.494655 3_2:-70377887 Msa0421430:three_prime_UTR
AGTTTAAGGGGTCCCAGGGC+TGG 0.495042 3_2:+70377929 Msa0421440:CDS
AGCTCAGACACTAGGAATCC+AGG 0.498066 3_2:-70378853 Msa0421430:three_prime_UTR
TTCGCCGGTGAGCCGGAGTA+AGG 0.500155 3_2:-70377416 Msa0421430:three_prime_UTR
GTGGTCGAATTCACCTTATA+CGG 0.500256 3_2:-70377581 Msa0421430:three_prime_UTR
AACGTTGACACCCCAGGTGG+CGG 0.500618 3_2:-70377390 Msa0421430:three_prime_UTR
AAATCATAAACAGCATTCTC+AGG 0.503953 3_2:-70377998 Msa0421430:three_prime_UTR
ATAAGAGTTTAAGGGGTCCC+AGG 0.506409 3_2:+70377924 Msa0421440:CDS
ATTTCCAAGTGCAACTGCAT+TGG 0.507929 3_2:-70378155 Msa0421430:three_prime_UTR
GGCCTTAACTTGCTTGGCAT+AGG 0.510929 3_2:-70378134 Msa0421430:three_prime_UTR
GTGTAAGCGGCGAAATTCGC+CGG 0.512076 3_2:-70377431 Msa0421430:three_prime_UTR
CTAAAGTACAAGGATTAGGC+TGG 0.514314 3_2:+70378874 Msa0421440:exon
AAGGCCAATGCAGTTGCACT+TGG 0.514829 3_2:+70378151 Msa0421440:CDS
TTCCAGGGGTCTGGTTGAGA+AGG 0.515430 3_2:+70378663 Msa0421440:CDS
ATGGGACTGGATCTACCTTC+TGG 0.519276 3_2:+70377482 Msa0421440:CDS
CTTCGGAATATTTGTTGGTG+AGG 0.520695 3_2:-70377271 Msa0421430:three_prime_UTR
GTGTGTAACGAAAATTTAGT+GGG 0.521329 3_2:-70379091 Msa0421430:three_prime_UTR
CTTCCATAATCCCAATCTCT+AGG 0.521993 3_2:-70377686 Msa0421430:three_prime_UTR
CTAGAGATTGGGATTATGGA+AGG 0.522411 3_2:+70377687 Msa0421440:CDS
TGGAAATTACTTGATGAGCA+AGG 0.526987 3_2:+70378171 Msa0421440:CDS
CTTCATCGATTCATTCACAA+TGG 0.529216 3_2:+70377091 Msa0421440:exon
TCTCACACTAGAGATTCAAA+AGG 0.529312 3_2:+70378726 Msa0421440:CDS
TGCCCCAGCTATGACTTCCA+GGG 0.531621 3_2:+70378648 Msa0421440:CDS
TCAGGCTGACCCTTCTTAGG+TGG 0.531885 3_2:-70377980 Msa0421430:three_prime_UTR
TCTGGTGGACATTTGACTCA+TGG 0.533259 3_2:+70377500 Msa0421440:CDS
GACCCCTGGAAGTCATAGCT+GGG 0.538130 3_2:-70378651 Msa0421430:three_prime_UTR
TCATGATAGGATCATGGGAC+TGG 0.541625 3_2:+70377469 Msa0421440:CDS
GGAAATTACTTGATGAGCAA+GGG 0.546759 3_2:+70378172 Msa0421440:CDS
GGTCCTCACAACCACCAGAT+TGG 0.554648 3_2:+70378064 Msa0421440:CDS
CCTGACTCCTCCAGGTGCCA+AGG 0.555521 3_2:-70378438 Msa0421430:three_prime_UTR
ATTCGTTGCCGCCGTAGTAA+CGG 0.556361 3_2:-70377307 Msa0421430:three_prime_UTR
GGTGGCGGCGTCGAGATGGA+AGG 0.558501 3_2:-70377375 Msa0421430:three_prime_UTR
GTGAGGACCACCCTGAAGGG+AGG 0.560471 3_2:-70378050 Msa0421430:three_prime_UTR
GTAGAAGATCATACCAGCCC+TGG 0.560560 3_2:-70377942 Msa0421430:three_prime_UTR
AATCCTCATGATAGGATCAT+GGG 0.561616 3_2:+70377464 Msa0421440:CDS
CCGCCGTAGTAACGGTTACC+GGG 0.564640 3_2:-70377299 Msa0421430:three_prime_UTR
GCACCTGGAGGAGTCAGGAT+TGG 0.566548 3_2:+70378443 Msa0421440:CDS
CCAAAGTTGATTATTTGTGG+TGG 0.566763 3_2:+70377653 Msa0421440:CDS
TGAAACAGGCCACCACGCCT+GGG 0.567620 3_2:+70378104 Msa0421440:CDS
CATCTCGACGCCGCCACCTG+GGG 0.569527 3_2:+70377380 Msa0421440:CDS
TGTACTTTAGCTCAGACACT+AGG 0.569790 3_2:-70378861 Msa0421430:three_prime_UTR
AGCCGAAATCTTCTTCCCAC+CGG 0.572971 3_2:-70377534 Msa0421430:three_prime_UTR
TGAGGACCACCCTGAAGGGA+GGG 0.581330 3_2:-70378049 Msa0421430:three_prime_UTR
GGCTTCAATGACTGCGAAGG+AGG 0.581885 3_2:-70377237 Msa0421430:three_prime_UTR
GGCCTTGAACCCAGGCGTGG+TGG 0.582420 3_2:-70378113 Msa0421430:three_prime_UTR
GGGCTGGTATGATCTTCTAC+CGG 0.582673 3_2:+70377945 Msa0421440:CDS
AGTGTCTGAGCTAAAGTACA+AGG 0.584233 3_2:+70378864 Msa0421440:CDS
TTCGCAGTCATTGAAGCCCT+AGG 0.584856 3_2:+70377242 Msa0421440:CDS
TACTCTTGCAGGCAATAAGG+TGG 0.588895 3_2:+70378352 Msa0421440:intron
AGGCGGTGAGAGCGCGTGAG+CGG 0.589839 3_2:-70377355 Msa0421430:three_prime_UTR
AAGGGATACAGTCTTGTCAC+TGG 0.593253 3_2:+70378190 Msa0421440:CDS
GACTCTACCCTGGCAAGATG+GGG 0.594221 3_2:+70378917 Msa0421440:three_prime_UTR
TGGTATGATCTTCTACCGGA+AGG 0.596236 3_2:+70377949 Msa0421440:CDS
GAGGACCACCCTGAAGGGAG+GGG 0.597307 3_2:-70378048 Msa0421430:three_prime_UTR
TATAAGGTGAATTCGACCAC+GGG 0.598190 3_2:+70377584 Msa0421440:CDS
ATTGAGAACGGCGGTGTAAG+CGG 0.599009 3_2:-70377444 Msa0421430:three_prime_UTR
GAATGAATCGATGAAGAATG+TGG 0.600571 3_2:-70377084 Msa0421430:three_prime_UTR
TGAGAGTTACTGCACGGTGA+AGG 0.602137 3_2:-70378708 Msa0421430:three_prime_UTR
GGACTGGATCTACCTTCTGG+TGG 0.603220 3_2:+70377485 Msa0421440:CDS
TAAGAGTTTAAGGGGTCCCA+GGG 0.604324 3_2:+70377925 Msa0421440:CDS
TAGAAGATCATACCAGCCCT+GGG 0.606806 3_2:-70377941 Msa0421430:three_prime_UTR
CCAATATCGTATCAAATGGA+CGG 0.607038 3_2:+70379174 Msa0421440:three_prime_UTR
GCACCAATCTGGTGGTTGTG+AGG 0.609752 3_2:-70378067 Msa0421430:three_prime_UTR
GTTGTGAGGACCACCCTGAA+GGG 0.610275 3_2:-70378053 Msa0421430:three_prime_UTR
TAAAGTACAAGGATTAGGCT+GGG 0.613683 3_2:+70378875 Msa0421440:exon
GTCAACGTTCAACCTTACTC+CGG 0.614352 3_2:+70377404 Msa0421440:CDS
TAGGGCTTCAATGACTGCGA+AGG 0.618421 3_2:-70377240 Msa0421430:three_prime_UTR
GTCCATTTGATACGATATTG+GGG 0.619248 3_2:-70379172 Msa0421430:three_prime_UTR
GCCCCAGCTATGACTTCCAG+GGG 0.620989 3_2:+70378649 Msa0421440:CDS
ACAACCCATAAGAGTTTAAG+GGG 0.623565 3_2:+70377917 Msa0421440:CDS
ATGGATCCAGTTAGTGAATG+GGG 0.624625 3_2:+70377110 Msa0421440:CDS
GTTTACCGGTCAAGCCAAGA+GGG 0.625923 3_2:-70378249 Msa0421430:intron
GGACCTAAGCCACCTAAGAA+GGG 0.629365 3_2:+70377971 Msa0421440:CDS
CATGGTTACTATACTTCCGG+TGG 0.629951 3_2:+70377518 Msa0421440:CDS
GGTATGATCTTCTACCGGAA+GGG 0.631495 3_2:+70377950 Msa0421440:CDS
ACATAACAACAATAAACTCA+AGG 0.634786 3_2:-70379146 Msa0421430:three_prime_UTR
ATAGGCCTTGAACCCAGGCG+TGG 0.634867 3_2:-70378116 Msa0421430:three_prime_UTR
TGTTCACAGTAATGTTACAG+AGG 0.637542 3_2:-70378388 Msa0421430:three_prime_UTR
AGAAATTCAATATAACAGCA+AGG 0.640059 3_2:-70379027 Msa0421430:intron
TCAACCTTACTCCGGCTCAC+CGG 0.640516 3_2:+70377412 Msa0421440:CDS
TGAGTCAAATGTCCACCAGA+AGG 0.641882 3_2:-70377497 Msa0421430:three_prime_UTR
AGGTTGAACGTTGACACCCC+AGG 0.642017 3_2:-70377396 Msa0421430:three_prime_UTR
GGTTGTGAGGACCACCCTGA+AGG 0.642881 3_2:-70378054 Msa0421430:three_prime_UTR
ATGCCCGGTAACCGTTACTA+CGG 0.643010 3_2:+70377296 Msa0421440:CDS
GGCGGCGTCGAGATGGAAGG+CGG 0.644858 3_2:-70377372 Msa0421430:three_prime_UTR
CAGCAAGAGCACCAATCTGG+TGG 0.647474 3_2:-70378075 Msa0421430:three_prime_UTR
CCCGGTAACCGTTACTACGG+CGG 0.648521 3_2:+70377299 Msa0421440:CDS
CTCACCAACAAATATTCCGA+AGG 0.651545 3_2:+70377272 Msa0421440:CDS
CTTCCAAAATGACTCTACCC+TGG 0.655628 3_2:+70378907 Msa0421440:three_prime_UTR
AGGCAATGAGTTCGATTCCG+CGG 0.655674 3_2:-70377202 Msa0421430:three_prime_UTR
CCTATCATGAGGATTGAGAA+CGG 0.656550 3_2:-70377456 Msa0421430:three_prime_UTR
TACCGGTCAAGCCAAGAGGG+CGG 0.661729 3_2:-70378246 Msa0421430:intron
TCCATTTGATACGATATTGG+GGG 0.667002 3_2:-70379171 Msa0421430:three_prime_UTR
AGTTTACCGGTCAAGCCAAG+AGG 0.668683 3_2:-70378250 Msa0421430:intron
CAAAGAAAAGAGCACGACAG+TGG 0.676462 3_2:-70377058 Msa0421430:three_prime_UTR
ATTATATCCCCATCTTGCCA+GGG 0.676773 3_2:-70378924 Msa0421430:three_prime_UTR
ATAATACCTGAGCAGCAACA+AGG 0.680074 3_2:-70377772 Msa0421430:intron
CTAGTGTGAGAGTTACTGCA+CGG 0.681721 3_2:-70378714 Msa0421430:three_prime_UTR
AGTCCCATGATCCTATCATG+AGG 0.682957 3_2:-70377467 Msa0421430:three_prime_UTR
ACCCCTGGAAGTCATAGCTG+GGG 0.683408 3_2:-70378650 Msa0421430:three_prime_UTR
ATGGTTACTATACTTCCGGT+GGG 0.689475 3_2:+70377519 Msa0421440:CDS
AGTAGTGCCTTGGCACCTGG+AGG 0.689991 3_2:+70378431 Msa0421440:CDS
AGACAAGTTGCTGATAAGTG+TGG 0.694051 3_2:+70377713 Msa0421440:CDS
GTATAAGGTGAATTCGACCA+CGG 0.696614 3_2:+70377583 Msa0421440:CDS
ATCATAATCAATAAACCCCG+TGG 0.703727 3_2:-70377600 Msa0421430:three_prime_UTR
GGATACAGTCTTGTCACTGG+AGG 0.719260 3_2:+70378193 Msa0421440:CDS
ATAAGGTGAATTCGACCACG+GGG 0.760924 3_2:+70377585 Msa0421440:CDS
TTGAACGTTGACACCCCAGG+TGG 0.772161 3_2:-70377393 Msa0421430:three_prime_UTR
ATCATGAGGATTGAGAACGG+CGG 0.786132 3_2:-70377453 Msa0421430:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTAAAGCAAAAACAA+TGG - chr3_2:70378981-70379000 Msa0421430:three_prime_UTR 15.0%
!!! TAAATTTAAAGCAAAAACAA+TGG - chr3_2:70378981-70379000 Msa0421430:three_prime_UTR 15.0%
!! GCTAATTAGAATTCATTAAT+TGG - chr3_2:70379064-70379083 Msa0421430:three_prime_UTR 20.0%
!! GCTAATTAGAATTCATTAAT+TGG - chr3_2:70379064-70379083 Msa0421430:three_prime_UTR 20.0%
!! GTTTATTGATTATGATAGGT+TGG + chr3_2:70377607-70377626 Msa0421440:CDS 25.0%
!! TTACGAGTTTATTAGTTTAC+CGG - chr3_2:70378266-70378285 Msa0421430:intron 25.0%
! ATCAAAACTTTGCATAAACA+AGG - chr3_2:70378562-70378581 Msa0421430:intron 25.0%
! AGAAATTCAATATAACAGCA+AGG - chr3_2:70379030-70379049 Msa0421430:intron 25.0%
! ACACCAAATTCTGTATTTAT+CGG + chr3_2:70379110-70379129 Msa0421440:three_prime_UTR 25.0%
! TAACCGATAAATACAGAATT+TGG - chr3_2:70379116-70379135 Msa0421430:three_prime_UTR 25.0%
! ACATAACAACAATAAACTCA+AGG - chr3_2:70379149-70379168 Msa0421430:three_prime_UTR 25.0%
!! GTTTATTGATTATGATAGGT+TGG + chr3_2:70377607-70377626 Msa0421440:CDS 25.0%
!! TTACGAGTTTATTAGTTTAC+CGG - chr3_2:70378266-70378285 Msa0421430:intron 25.0%
! ATCAAAACTTTGCATAAACA+AGG - chr3_2:70378562-70378581 Msa0421430:intron 25.0%
! AGAAATTCAATATAACAGCA+AGG - chr3_2:70379030-70379049 Msa0421430:intron 25.0%
! ACACCAAATTCTGTATTTAT+CGG + chr3_2:70379110-70379129 Msa0421440:three_prime_UTR 25.0%
! TAACCGATAAATACAGAATT+TGG - chr3_2:70379116-70379135 Msa0421430:three_prime_UTR 25.0%
! ACATAACAACAATAAACTCA+AGG - chr3_2:70379149-70379168 Msa0421430:three_prime_UTR 25.0%
! TTTCTTTTTCTATTAGGTCG+TGG - chr3_2:70377169-70377188 Msa0421430:three_prime_UTR 30.0%
! GGCGTTTTTCTTTTTCTATT+AGG - chr3_2:70377175-70377194 Msa0421430:three_prime_UTR 30.0%
! AGACCAAAGTTGATTATTTG+TGG + chr3_2:70377650-70377669 Msa0421440:CDS 30.0%
AACAACCCATAAGAGTTTAA+GGG + chr3_2:70377916-70377935 Msa0421440:CDS 30.0%
AAATCATAAACAGCATTCTC+AGG - chr3_2:70378001-70378020 Msa0421430:three_prime_UTR 30.0%
TGAAAATCATCTTGTCTTGT+GGG + chr3_2:70378219-70378238 Msa0421440:CDS 30.0%
AAAAAATGTTGCAATGTCGT+TGG + chr3_2:70378284-70378303 Msa0421440:intron 30.0%
AAAAATGTTGCAATGTCGTT+GGG + chr3_2:70378285-70378304 Msa0421440:intron 30.0%
TTGGGTTTGATTGTTAAAGT+TGG + chr3_2:70378303-70378322 Msa0421440:intron 30.0%
TGGGTTTGATTGTTAAAGTT+GGG + chr3_2:70378304-70378323 Msa0421440:intron 30.0%
TAAACAAGGACTTCCAATAT+TGG - chr3_2:70378548-70378567 Msa0421430:intron 30.0%
CTAGAGATTCAAAAGGAATA+TGG + chr3_2:70378733-70378752 Msa0421440:CDS 30.0%
! GGAATATGGTAAACTTTTGA+AGG + chr3_2:70378747-70378766 Msa0421440:CDS 30.0%
!! ACTTTTGAAGGATTTCAACA+AGG + chr3_2:70378759-70378778 Msa0421440:CDS 30.0%
!! CTTTTGAAGGATTTCAACAA+GGG + chr3_2:70378760-70378779 Msa0421440:CDS 30.0%
!! GGGATATAATGCTCTTATTT+TGG + chr3_2:70378937-70378956 Msa0421440:three_prime_UTR 30.0%
!!! TCTTATTTTGGATGTCACAT+AGG + chr3_2:70378949-70378968 Msa0421440:three_prime_UTR 30.0%
GTGTGTAACGAAAATTTAGT+GGG - chr3_2:70379094-70379113 Msa0421430:three_prime_UTR 30.0%
! TTTCTTTTTCTATTAGGTCG+TGG - chr3_2:70377169-70377188 Msa0421430:three_prime_UTR 30.0%
! GGCGTTTTTCTTTTTCTATT+AGG - chr3_2:70377175-70377194 Msa0421430:three_prime_UTR 30.0%
! AGACCAAAGTTGATTATTTG+TGG + chr3_2:70377650-70377669 Msa0421440:CDS 30.0%
AACAACCCATAAGAGTTTAA+GGG + chr3_2:70377916-70377935 Msa0421440:CDS 30.0%
AAATCATAAACAGCATTCTC+AGG - chr3_2:70378001-70378020 Msa0421430:three_prime_UTR 30.0%
TGAAAATCATCTTGTCTTGT+GGG + chr3_2:70378219-70378238 Msa0421440:CDS 30.0%
AAAAAATGTTGCAATGTCGT+TGG + chr3_2:70378284-70378303 Msa0421440:intron 30.0%
AAAAATGTTGCAATGTCGTT+GGG + chr3_2:70378285-70378304 Msa0421440:intron 30.0%
TTGGGTTTGATTGTTAAAGT+TGG + chr3_2:70378303-70378322 Msa0421440:intron 30.0%
TGGGTTTGATTGTTAAAGTT+GGG + chr3_2:70378304-70378323 Msa0421440:intron 30.0%
TAAACAAGGACTTCCAATAT+TGG - chr3_2:70378548-70378567 Msa0421430:intron 30.0%
CTAGAGATTCAAAAGGAATA+TGG + chr3_2:70378733-70378752 Msa0421440:CDS 30.0%
! GGAATATGGTAAACTTTTGA+AGG + chr3_2:70378747-70378766 Msa0421440:CDS 30.0%
!! ACTTTTGAAGGATTTCAACA+AGG + chr3_2:70378759-70378778 Msa0421440:CDS 30.0%
!! CTTTTGAAGGATTTCAACAA+GGG + chr3_2:70378760-70378779 Msa0421440:CDS 30.0%
!! GGGATATAATGCTCTTATTT+TGG + chr3_2:70378937-70378956 Msa0421440:three_prime_UTR 30.0%
!!! TCTTATTTTGGATGTCACAT+AGG + chr3_2:70378949-70378968 Msa0421440:three_prime_UTR 30.0%
GTGTGTAACGAAAATTTAGT+GGG - chr3_2:70379094-70379113 Msa0421430:three_prime_UTR 30.0%
GAATGAATCGATGAAGAATG+TGG - chr3_2:70377087-70377106 Msa0421430:three_prime_UTR 35.0%
!! CTTCATCGATTCATTCACAA+TGG + chr3_2:70377091-70377110 Msa0421440:exon 35.0%
AATGGATCCAGTTAGTGAAT+GGG + chr3_2:70377109-70377128 Msa0421440:exon 35.0%
! TTCGGAATATTTGTTGGTGA+GGG - chr3_2:70377273-70377292 Msa0421430:three_prime_UTR 35.0%
AATCCTCATGATAGGATCAT+GGG + chr3_2:70377464-70377483 Msa0421440:CDS 35.0%
ACTCATGGTTACTATACTTC+CGG + chr3_2:70377515-70377534 Msa0421440:CDS 35.0%
ATCATAATCAATAAACCCCG+TGG - chr3_2:70377603-70377622 Msa0421430:three_prime_UTR 35.0%
! CGGGGTTTATTGATTATGAT+AGG + chr3_2:70377603-70377622 Msa0421440:CDS 35.0%
CCACCACAAATAATCAACTT+TGG - chr3_2:70377656-70377675 Msa0421430:three_prime_UTR 35.0%
! CCAAAGTTGATTATTTGTGG+TGG + chr3_2:70377653-70377672 Msa0421440:CDS 35.0%
AAGTGCTTATCCTAGAGATT+GGG + chr3_2:70377676-70377695 Msa0421440:CDS 35.0%
TATCCTAGAGATTGGGATTA+TGG + chr3_2:70377683-70377702 Msa0421440:CDS 35.0%
! TGCTCTTTTGCTTTGTGATA+TGG + chr3_2:70377736-70377755 Msa0421440:CDS 35.0%
TGTGATATGGCTCATATTAG+TGG + chr3_2:70377749-70377768 Msa0421440:CDS 35.0%
! AGTTACGTTTTTGTGGATAC+AGG + chr3_2:70377853-70377872 Msa0421440:intron 35.0%
ACAATGTCACAGAACTCAAA+AGG - chr3_2:70377890-70377909 Msa0421430:three_prime_UTR 35.0%
CAACAACCCATAAGAGTTTA+AGG + chr3_2:70377915-70377934 Msa0421440:CDS 35.0%
ACAACCCATAAGAGTTTAAG+GGG + chr3_2:70377917-70377936 Msa0421440:CDS 35.0%
TGGAAATTACTTGATGAGCA+AGG + chr3_2:70378171-70378190 Msa0421440:CDS 35.0%
GGAAATTACTTGATGAGCAA+GGG + chr3_2:70378172-70378191 Msa0421440:CDS 35.0%
CTGAAAATCATCTTGTCTTG+TGG + chr3_2:70378218-70378237 Msa0421440:CDS 35.0%
! TGTATTTTCCATACTCTTGC+AGG + chr3_2:70378341-70378360 Msa0421440:intron 35.0%
TGTTCACAGTAATGTTACAG+AGG - chr3_2:70378391-70378410 Msa0421430:three_prime_UTR 35.0%
!!! GTGAACAAGAATGCTGTTTT+TGG + chr3_2:70378404-70378423 Msa0421440:CDS 35.0%
TCTCACACTAGAGATTCAAA+AGG + chr3_2:70378726-70378745 Msa0421440:CDS 35.0%
ACTTCTCAACATCAGCTTTA+AGG - chr3_2:70378813-70378832 Msa0421430:three_prime_UTR 35.0%
TGAGCTAAAGTACAAGGATT+AGG + chr3_2:70378870-70378889 Msa0421440:CDS 35.0%
TAAAGTACAAGGATTAGGCT+GGG + chr3_2:70378875-70378894 Msa0421440:exon 35.0%
GGTGTGTAACGAAAATTTAG+TGG - chr3_2:70379095-70379114 Msa0421430:three_prime_UTR 35.0%
TCCATTTGATACGATATTGG+GGG - chr3_2:70379174-70379193 Msa0421430:three_prime_UTR 35.0%
GTCCATTTGATACGATATTG+GGG - chr3_2:70379175-70379194 Msa0421430:three_prime_UTR 35.0%
CGTCCATTTGATACGATATT+GGG - chr3_2:70379176-70379195 Msa0421430:three_prime_UTR 35.0%
CCAATATCGTATCAAATGGA+CGG + chr3_2:70379174-70379193 Msa0421440:three_prime_UTR 35.0%
GAATGAATCGATGAAGAATG+TGG - chr3_2:70377087-70377106 Msa0421430:three_prime_UTR 35.0%
!! CTTCATCGATTCATTCACAA+TGG + chr3_2:70377091-70377110 Msa0421440:exon 35.0%
AATGGATCCAGTTAGTGAAT+GGG + chr3_2:70377109-70377128 Msa0421440:exon 35.0%
! TTCGGAATATTTGTTGGTGA+GGG - chr3_2:70377273-70377292 Msa0421430:three_prime_UTR 35.0%
AATCCTCATGATAGGATCAT+GGG + chr3_2:70377464-70377483 Msa0421440:CDS 35.0%
ACTCATGGTTACTATACTTC+CGG + chr3_2:70377515-70377534 Msa0421440:CDS 35.0%
ATCATAATCAATAAACCCCG+TGG - chr3_2:70377603-70377622 Msa0421430:three_prime_UTR 35.0%
! CGGGGTTTATTGATTATGAT+AGG + chr3_2:70377603-70377622 Msa0421440:CDS 35.0%
CCACCACAAATAATCAACTT+TGG - chr3_2:70377656-70377675 Msa0421430:three_prime_UTR 35.0%
! CCAAAGTTGATTATTTGTGG+TGG + chr3_2:70377653-70377672 Msa0421440:CDS 35.0%
AAGTGCTTATCCTAGAGATT+GGG + chr3_2:70377676-70377695 Msa0421440:CDS 35.0%
TATCCTAGAGATTGGGATTA+TGG + chr3_2:70377683-70377702 Msa0421440:CDS 35.0%
! TGCTCTTTTGCTTTGTGATA+TGG + chr3_2:70377736-70377755 Msa0421440:CDS 35.0%
TGTGATATGGCTCATATTAG+TGG + chr3_2:70377749-70377768 Msa0421440:CDS 35.0%
! AGTTACGTTTTTGTGGATAC+AGG + chr3_2:70377853-70377872 Msa0421440:intron 35.0%
ACAATGTCACAGAACTCAAA+AGG - chr3_2:70377890-70377909 Msa0421430:three_prime_UTR 35.0%
CAACAACCCATAAGAGTTTA+AGG + chr3_2:70377915-70377934 Msa0421440:CDS 35.0%
ACAACCCATAAGAGTTTAAG+GGG + chr3_2:70377917-70377936 Msa0421440:CDS 35.0%
TGGAAATTACTTGATGAGCA+AGG + chr3_2:70378171-70378190 Msa0421440:CDS 35.0%
GGAAATTACTTGATGAGCAA+GGG + chr3_2:70378172-70378191 Msa0421440:CDS 35.0%
CTGAAAATCATCTTGTCTTG+TGG + chr3_2:70378218-70378237 Msa0421440:CDS 35.0%
! TGTATTTTCCATACTCTTGC+AGG + chr3_2:70378341-70378360 Msa0421440:intron 35.0%
TGTTCACAGTAATGTTACAG+AGG - chr3_2:70378391-70378410 Msa0421430:three_prime_UTR 35.0%
!!! GTGAACAAGAATGCTGTTTT+TGG + chr3_2:70378404-70378423 Msa0421440:CDS 35.0%
TCTCACACTAGAGATTCAAA+AGG + chr3_2:70378726-70378745 Msa0421440:CDS 35.0%
ACTTCTCAACATCAGCTTTA+AGG - chr3_2:70378813-70378832 Msa0421430:three_prime_UTR 35.0%
TGAGCTAAAGTACAAGGATT+AGG + chr3_2:70378870-70378889 Msa0421440:CDS 35.0%
TAAAGTACAAGGATTAGGCT+GGG + chr3_2:70378875-70378894 Msa0421440:exon 35.0%
GGTGTGTAACGAAAATTTAG+TGG - chr3_2:70379095-70379114 Msa0421430:three_prime_UTR 35.0%
TCCATTTGATACGATATTGG+GGG - chr3_2:70379174-70379193 Msa0421430:three_prime_UTR 35.0%
GTCCATTTGATACGATATTG+GGG - chr3_2:70379175-70379194 Msa0421430:three_prime_UTR 35.0%
CGTCCATTTGATACGATATT+GGG - chr3_2:70379176-70379195 Msa0421430:three_prime_UTR 35.0%
CCAATATCGTATCAAATGGA+CGG + chr3_2:70379174-70379193 Msa0421440:three_prime_UTR 35.0%
CAATGGATCCAGTTAGTGAA+TGG + chr3_2:70377108-70377127 Msa0421440:exon 40.0%
ATGGATCCAGTTAGTGAATG+GGG + chr3_2:70377110-70377129 Msa0421440:CDS 40.0%
TCTGGATCTACGGTTACTAA+TGG - chr3_2:70377143-70377162 Msa0421430:three_prime_UTR 40.0%
TCTATTAGGTCGTGGATTTC+TGG - chr3_2:70377161-70377180 Msa0421430:three_prime_UTR 40.0%
! GAAGGAGGTGAAATTTTCTG+AGG - chr3_2:70377225-70377244 Msa0421430:three_prime_UTR 40.0%
! CTTCGGAATATTTGTTGGTG+AGG - chr3_2:70377274-70377293 Msa0421430:three_prime_UTR 40.0%
CTCACCAACAAATATTCCGA+AGG + chr3_2:70377272-70377291 Msa0421440:CDS 40.0%
CATGCCTTCGGAATATTTGT+TGG - chr3_2:70377279-70377298 Msa0421430:three_prime_UTR 40.0%
CCTATCATGAGGATTGAGAA+CGG - chr3_2:70377459-70377478 Msa0421430:three_prime_UTR 40.0%
CAATCCTCATGATAGGATCA+TGG + chr3_2:70377463-70377482 Msa0421440:CDS 40.0%
ATGGTTACTATACTTCCGGT+GGG + chr3_2:70377519-70377538 Msa0421440:CDS 40.0%
! CTTTGAGAGTTTGCCGTATA+AGG + chr3_2:70377568-70377587 Msa0421440:CDS 40.0%
GTGGTCGAATTCACCTTATA+CGG - chr3_2:70377584-70377603 Msa0421430:three_prime_UTR 40.0%
GTATAAGGTGAATTCGACCA+CGG + chr3_2:70377583-70377602 Msa0421440:CDS 40.0%
TATAAGGTGAATTCGACCAC+GGG + chr3_2:70377584-70377603 Msa0421440:CDS 40.0%
! TAGGTTGGAAGAGAAAGCTT+TGG + chr3_2:70377622-70377641 Msa0421440:CDS 40.0%
! GAAGTGCTTATCCTAGAGAT+TGG + chr3_2:70377675-70377694 Msa0421440:CDS 40.0%
CTTCCATAATCCCAATCTCT+AGG - chr3_2:70377689-70377708 Msa0421430:three_prime_UTR 40.0%
CTAGAGATTGGGATTATGGA+AGG + chr3_2:70377687-70377706 Msa0421440:CDS 40.0%
AGACAAGTTGCTGATAAGTG+TGG + chr3_2:70377713-70377732 Msa0421440:CDS 40.0%
ATAATACCTGAGCAGCAACA+AGG - chr3_2:70377775-70377794 Msa0421430:intron 40.0%
TTGTTGCTGCTCAGGTATTA+TGG + chr3_2:70377774-70377793 Msa0421440:intron 40.0%
! GAGCTTGAGTTACGTTTTTG+TGG + chr3_2:70377846-70377865 Msa0421440:intron 40.0%
!! TCTTGCTGTTGCTTTGAAAC+AGG + chr3_2:70378090-70378109 Msa0421440:CDS 40.0%
ATTTCCAAGTGCAACTGCAT+TGG - chr3_2:70378158-70378177 Msa0421430:three_prime_UTR 40.0%
!! TTTTGGTGATAGTAGTGCCT+TGG + chr3_2:70378421-70378440 Msa0421440:CDS 40.0%
TGTCACCAGAAAGCCAATAT+TGG + chr3_2:70378532-70378551 Msa0421440:intron 40.0%
!! GACTTCCAATATTGGCTTTC+TGG - chr3_2:70378540-70378559 Msa0421430:intron 40.0%
TGACATGAGCTTCTGTTAAC+AGG + chr3_2:70378625-70378644 Msa0421440:intron 40.0%
TCAGCATCATTTGATATGCC+TGG + chr3_2:70378835-70378854 Msa0421440:CDS 40.0%
! TGTACTTTAGCTCAGACACT+AGG - chr3_2:70378864-70378883 Msa0421430:three_prime_UTR 40.0%
AGTGTCTGAGCTAAAGTACA+AGG + chr3_2:70378864-70378883 Msa0421440:CDS 40.0%
CTAAAGTACAAGGATTAGGC+TGG + chr3_2:70378874-70378893 Msa0421440:exon 40.0%
ATTATATCCCCATCTTGCCA+GGG - chr3_2:70378927-70378946 Msa0421430:three_prime_UTR 40.0%
TCCCCCAATATCGTATCAAA+TGG + chr3_2:70379170-70379189 Msa0421440:three_prime_UTR 40.0%
CCGTCCATTTGATACGATAT+TGG - chr3_2:70379177-70379196 Msa0421430:three_prime_UTR 40.0%
CAATGGATCCAGTTAGTGAA+TGG + chr3_2:70377108-70377127 Msa0421440:exon 40.0%
ATGGATCCAGTTAGTGAATG+GGG + chr3_2:70377110-70377129 Msa0421440:CDS 40.0%
TCTGGATCTACGGTTACTAA+TGG - chr3_2:70377143-70377162 Msa0421430:three_prime_UTR 40.0%
TCTATTAGGTCGTGGATTTC+TGG - chr3_2:70377161-70377180 Msa0421430:three_prime_UTR 40.0%
! GAAGGAGGTGAAATTTTCTG+AGG - chr3_2:70377225-70377244 Msa0421430:three_prime_UTR 40.0%
! CTTCGGAATATTTGTTGGTG+AGG - chr3_2:70377274-70377293 Msa0421430:three_prime_UTR 40.0%
CTCACCAACAAATATTCCGA+AGG + chr3_2:70377272-70377291 Msa0421440:CDS 40.0%
CATGCCTTCGGAATATTTGT+TGG - chr3_2:70377279-70377298 Msa0421430:three_prime_UTR 40.0%
CCTATCATGAGGATTGAGAA+CGG - chr3_2:70377459-70377478 Msa0421430:three_prime_UTR 40.0%
CAATCCTCATGATAGGATCA+TGG + chr3_2:70377463-70377482 Msa0421440:CDS 40.0%
ATGGTTACTATACTTCCGGT+GGG + chr3_2:70377519-70377538 Msa0421440:CDS 40.0%
! CTTTGAGAGTTTGCCGTATA+AGG + chr3_2:70377568-70377587 Msa0421440:CDS 40.0%
GTGGTCGAATTCACCTTATA+CGG - chr3_2:70377584-70377603 Msa0421430:three_prime_UTR 40.0%
GTATAAGGTGAATTCGACCA+CGG + chr3_2:70377583-70377602 Msa0421440:CDS 40.0%
TATAAGGTGAATTCGACCAC+GGG + chr3_2:70377584-70377603 Msa0421440:CDS 40.0%
! TAGGTTGGAAGAGAAAGCTT+TGG + chr3_2:70377622-70377641 Msa0421440:CDS 40.0%
! GAAGTGCTTATCCTAGAGAT+TGG + chr3_2:70377675-70377694 Msa0421440:CDS 40.0%
CTTCCATAATCCCAATCTCT+AGG - chr3_2:70377689-70377708 Msa0421430:three_prime_UTR 40.0%
CTAGAGATTGGGATTATGGA+AGG + chr3_2:70377687-70377706 Msa0421440:CDS 40.0%
AGACAAGTTGCTGATAAGTG+TGG + chr3_2:70377713-70377732 Msa0421440:CDS 40.0%
ATAATACCTGAGCAGCAACA+AGG - chr3_2:70377775-70377794 Msa0421430:intron 40.0%
TTGTTGCTGCTCAGGTATTA+TGG + chr3_2:70377774-70377793 Msa0421440:intron 40.0%
! GAGCTTGAGTTACGTTTTTG+TGG + chr3_2:70377846-70377865 Msa0421440:intron 40.0%
!! TCTTGCTGTTGCTTTGAAAC+AGG + chr3_2:70378090-70378109 Msa0421440:CDS 40.0%
ATTTCCAAGTGCAACTGCAT+TGG - chr3_2:70378158-70378177 Msa0421430:three_prime_UTR 40.0%
!! TTTTGGTGATAGTAGTGCCT+TGG + chr3_2:70378421-70378440 Msa0421440:CDS 40.0%
TGTCACCAGAAAGCCAATAT+TGG + chr3_2:70378532-70378551 Msa0421440:intron 40.0%
!! GACTTCCAATATTGGCTTTC+TGG - chr3_2:70378540-70378559 Msa0421430:intron 40.0%
TGACATGAGCTTCTGTTAAC+AGG + chr3_2:70378625-70378644 Msa0421440:intron 40.0%
TCAGCATCATTTGATATGCC+TGG + chr3_2:70378835-70378854 Msa0421440:CDS 40.0%
! TGTACTTTAGCTCAGACACT+AGG - chr3_2:70378864-70378883 Msa0421430:three_prime_UTR 40.0%
AGTGTCTGAGCTAAAGTACA+AGG + chr3_2:70378864-70378883 Msa0421440:CDS 40.0%
CTAAAGTACAAGGATTAGGC+TGG + chr3_2:70378874-70378893 Msa0421440:exon 40.0%
ATTATATCCCCATCTTGCCA+GGG - chr3_2:70378927-70378946 Msa0421430:three_prime_UTR 40.0%
TCCCCCAATATCGTATCAAA+TGG + chr3_2:70379170-70379189 Msa0421440:three_prime_UTR 40.0%
CCGTCCATTTGATACGATAT+TGG - chr3_2:70379177-70379196 Msa0421430:three_prime_UTR 40.0%
! CAAAGAAAAGAGCACGACAG+TGG - chr3_2:70377061-70377080 Msa0421430:three_prime_UTR 45.0%
GTGTTTCCCCATTCACTAAC+TGG - chr3_2:70377119-70377138 Msa0421430:three_prime_UTR 45.0%
! GTCGTGGATTTCTGGATCTA+CGG - chr3_2:70377153-70377172 Msa0421430:three_prime_UTR 45.0%
! AAATATTCCGAAGGCATGCC+CGG + chr3_2:70377281-70377300 Msa0421440:CDS 45.0%
! AGCGGCAAATGTTTTCGATC+TGG - chr3_2:70377340-70377359 Msa0421430:three_prime_UTR 45.0%
GTCAACGTTCAACCTTACTC+CGG + chr3_2:70377404-70377423 Msa0421440:CDS 45.0%
ATCATGAGGATTGAGAACGG+CGG - chr3_2:70377456-70377475 Msa0421430:three_prime_UTR 45.0%
CCGTTCTCAATCCTCATGAT+AGG + chr3_2:70377456-70377475 Msa0421440:CDS 45.0%
AGTCCCATGATCCTATCATG+AGG - chr3_2:70377470-70377489 Msa0421430:three_prime_UTR 45.0%
TCATGATAGGATCATGGGAC+TGG + chr3_2:70377469-70377488 Msa0421440:CDS 45.0%
TGAGTCAAATGTCCACCAGA+AGG - chr3_2:70377500-70377519 Msa0421430:three_prime_UTR 45.0%
! TCTGGTGGACATTTGACTCA+TGG + chr3_2:70377500-70377519 Msa0421440:CDS 45.0%
CATGGTTACTATACTTCCGG+TGG + chr3_2:70377518-70377537 Msa0421440:CDS 45.0%
TTCCGGTGGGAAGAAGATTT+CGG + chr3_2:70377532-70377551 Msa0421440:CDS 45.0%
ATAAGGTGAATTCGACCACG+GGG + chr3_2:70377585-70377604 Msa0421440:CDS 45.0%
GGGACCCCTTAAACTCTTAT+GGG - chr3_2:70377924-70377943 Msa0421430:three_prime_UTR 45.0%
TGGGACCCCTTAAACTCTTA+TGG - chr3_2:70377925-70377944 Msa0421430:three_prime_UTR 45.0%
ATAAGAGTTTAAGGGGTCCC+AGG + chr3_2:70377924-70377943 Msa0421440:CDS 45.0%
TAAGAGTTTAAGGGGTCCCA+GGG + chr3_2:70377925-70377944 Msa0421440:CDS 45.0%
TAGAAGATCATACCAGCCCT+GGG - chr3_2:70377944-70377963 Msa0421430:three_prime_UTR 45.0%
TGGTATGATCTTCTACCGGA+AGG + chr3_2:70377949-70377968 Msa0421440:CDS 45.0%
GGTATGATCTTCTACCGGAA+GGG + chr3_2:70377950-70377969 Msa0421440:CDS 45.0%
!! TGCATTGGCCTTAACTTGCT+TGG - chr3_2:70378143-70378162 Msa0421430:three_prime_UTR 45.0%
! AAGGGATACAGTCTTGTCAC+TGG + chr3_2:70378190-70378209 Msa0421440:CDS 45.0%
CCTTATTGCCTGCAAGAGTA+TGG - chr3_2:70378352-70378371 Msa0421430:intron 45.0%
CCATACTCTTGCAGGCAATA+AGG + chr3_2:70378349-70378368 Msa0421440:intron 45.0%
TACTCTTGCAGGCAATAAGG+TGG + chr3_2:70378352-70378371 Msa0421440:intron 45.0%
CTAGTGTGAGAGTTACTGCA+CGG - chr3_2:70378717-70378736 Msa0421430:three_prime_UTR 45.0%
CTTCCAAAATGACTCTACCC+TGG + chr3_2:70378907-70378926 Msa0421440:three_prime_UTR 45.0%
! TTGCCAGGGTAGAGTCATTT+TGG - chr3_2:70378913-70378932 Msa0421430:three_prime_UTR 45.0%
CATTATATCCCCATCTTGCC+AGG - chr3_2:70378928-70378947 Msa0421430:three_prime_UTR 45.0%
! CAAAGAAAAGAGCACGACAG+TGG - chr3_2:70377061-70377080 Msa0421430:three_prime_UTR 45.0%
GTGTTTCCCCATTCACTAAC+TGG - chr3_2:70377119-70377138 Msa0421430:three_prime_UTR 45.0%
! GTCGTGGATTTCTGGATCTA+CGG - chr3_2:70377153-70377172 Msa0421430:three_prime_UTR 45.0%
! AAATATTCCGAAGGCATGCC+CGG + chr3_2:70377281-70377300 Msa0421440:CDS 45.0%
! AGCGGCAAATGTTTTCGATC+TGG - chr3_2:70377340-70377359 Msa0421430:three_prime_UTR 45.0%
GTCAACGTTCAACCTTACTC+CGG + chr3_2:70377404-70377423 Msa0421440:CDS 45.0%
ATCATGAGGATTGAGAACGG+CGG - chr3_2:70377456-70377475 Msa0421430:three_prime_UTR 45.0%
CCGTTCTCAATCCTCATGAT+AGG + chr3_2:70377456-70377475 Msa0421440:CDS 45.0%
AGTCCCATGATCCTATCATG+AGG - chr3_2:70377470-70377489 Msa0421430:three_prime_UTR 45.0%
TCATGATAGGATCATGGGAC+TGG + chr3_2:70377469-70377488 Msa0421440:CDS 45.0%
TGAGTCAAATGTCCACCAGA+AGG - chr3_2:70377500-70377519 Msa0421430:three_prime_UTR 45.0%
! TCTGGTGGACATTTGACTCA+TGG + chr3_2:70377500-70377519 Msa0421440:CDS 45.0%
CATGGTTACTATACTTCCGG+TGG + chr3_2:70377518-70377537 Msa0421440:CDS 45.0%
TTCCGGTGGGAAGAAGATTT+CGG + chr3_2:70377532-70377551 Msa0421440:CDS 45.0%
ATAAGGTGAATTCGACCACG+GGG + chr3_2:70377585-70377604 Msa0421440:CDS 45.0%
GGGACCCCTTAAACTCTTAT+GGG - chr3_2:70377924-70377943 Msa0421430:three_prime_UTR 45.0%
TGGGACCCCTTAAACTCTTA+TGG - chr3_2:70377925-70377944 Msa0421430:three_prime_UTR 45.0%
ATAAGAGTTTAAGGGGTCCC+AGG + chr3_2:70377924-70377943 Msa0421440:CDS 45.0%
TAAGAGTTTAAGGGGTCCCA+GGG + chr3_2:70377925-70377944 Msa0421440:CDS 45.0%
TAGAAGATCATACCAGCCCT+GGG - chr3_2:70377944-70377963 Msa0421430:three_prime_UTR 45.0%
TGGTATGATCTTCTACCGGA+AGG + chr3_2:70377949-70377968 Msa0421440:CDS 45.0%
GGTATGATCTTCTACCGGAA+GGG + chr3_2:70377950-70377969 Msa0421440:CDS 45.0%
!! TGCATTGGCCTTAACTTGCT+TGG - chr3_2:70378143-70378162 Msa0421430:three_prime_UTR 45.0%
! AAGGGATACAGTCTTGTCAC+TGG + chr3_2:70378190-70378209 Msa0421440:CDS 45.0%
CCTTATTGCCTGCAAGAGTA+TGG - chr3_2:70378352-70378371 Msa0421430:intron 45.0%
CCATACTCTTGCAGGCAATA+AGG + chr3_2:70378349-70378368 Msa0421440:intron 45.0%
TACTCTTGCAGGCAATAAGG+TGG + chr3_2:70378352-70378371 Msa0421440:intron 45.0%
CTAGTGTGAGAGTTACTGCA+CGG - chr3_2:70378717-70378736 Msa0421430:three_prime_UTR 45.0%
CTTCCAAAATGACTCTACCC+TGG + chr3_2:70378907-70378926 Msa0421440:three_prime_UTR 45.0%
! TTGCCAGGGTAGAGTCATTT+TGG - chr3_2:70378913-70378932 Msa0421430:three_prime_UTR 45.0%
CATTATATCCCCATCTTGCC+AGG - chr3_2:70378928-70378947 Msa0421430:three_prime_UTR 45.0%
AGGCAATGAGTTCGATTCCG+CGG - chr3_2:70377205-70377224 Msa0421430:three_prime_UTR 50.0%
TAGGGCTTCAATGACTGCGA+AGG - chr3_2:70377243-70377262 Msa0421430:three_prime_UTR 50.0%
TTCGCAGTCATTGAAGCCCT+AGG + chr3_2:70377242-70377261 Msa0421440:CDS 50.0%
ATGCCCGGTAACCGTTACTA+CGG + chr3_2:70377296-70377315 Msa0421440:CDS 50.0%
ATTCGTTGCCGCCGTAGTAA+CGG - chr3_2:70377310-70377329 Msa0421430:three_prime_UTR 50.0%
ATTGAGAACGGCGGTGTAAG+CGG - chr3_2:70377447-70377466 Msa0421430:three_prime_UTR 50.0%
ATGGGACTGGATCTACCTTC+TGG + chr3_2:70377482-70377501 Msa0421440:CDS 50.0%
AGCCGAAATCTTCTTCCCAC+CGG - chr3_2:70377537-70377556 Msa0421430:three_prime_UTR 50.0%
GTAGAAGATCATACCAGCCC+TGG - chr3_2:70377945-70377964 Msa0421430:three_prime_UTR 50.0%
! GGGCTGGTATGATCTTCTAC+CGG + chr3_2:70377945-70377964 Msa0421440:CDS 50.0%
GGACCTAAGCCACCTAAGAA+GGG + chr3_2:70377971-70377990 Msa0421440:CDS 50.0%
TGACCCTTCTTAGGTGGCTT+AGG - chr3_2:70377977-70377996 Msa0421430:three_prime_UTR 50.0%
TTCTCAGGCTGACCCTTCTT+AGG - chr3_2:70377986-70378005 Msa0421430:three_prime_UTR 50.0%
!! CAACAGCAAGAGCACCAATC+TGG - chr3_2:70378081-70378100 Msa0421430:three_prime_UTR 50.0%
GGCCTATGCCAAGCAAGTTA+AGG + chr3_2:70378132-70378151 Msa0421440:CDS 50.0%
!! GGCCTTAACTTGCTTGGCAT+AGG - chr3_2:70378137-70378156 Msa0421430:three_prime_UTR 50.0%
AAGGCCAATGCAGTTGCACT+TGG + chr3_2:70378151-70378170 Msa0421440:CDS 50.0%
! GGATACAGTCTTGTCACTGG+AGG + chr3_2:70378193-70378212 Msa0421440:CDS 50.0%
GTTTACCGGTCAAGCCAAGA+GGG - chr3_2:70378252-70378271 Msa0421430:intron 50.0%
AGTTTACCGGTCAAGCCAAG+AGG - chr3_2:70378253-70378272 Msa0421430:intron 50.0%
TTACCAATCCTGACTCCTCC+AGG - chr3_2:70378449-70378468 Msa0421430:intron 50.0%
TGAGAGTTACTGCACGGTGA+AGG - chr3_2:70378711-70378730 Msa0421430:three_prime_UTR 50.0%
AGCTCAGACACTAGGAATCC+AGG - chr3_2:70378856-70378875 Msa0421430:three_prime_UTR 50.0%
ATGACTCTACCCTGGCAAGA+TGG + chr3_2:70378915-70378934 Msa0421440:three_prime_UTR 50.0%
TGACTCTACCCTGGCAAGAT+GGG + chr3_2:70378916-70378935 Msa0421440:three_prime_UTR 50.0%
AGGCAATGAGTTCGATTCCG+CGG - chr3_2:70377205-70377224 Msa0421430:three_prime_UTR 50.0%
TAGGGCTTCAATGACTGCGA+AGG - chr3_2:70377243-70377262 Msa0421430:three_prime_UTR 50.0%
TTCGCAGTCATTGAAGCCCT+AGG + chr3_2:70377242-70377261 Msa0421440:CDS 50.0%
ATGCCCGGTAACCGTTACTA+CGG + chr3_2:70377296-70377315 Msa0421440:CDS 50.0%
ATTCGTTGCCGCCGTAGTAA+CGG - chr3_2:70377310-70377329 Msa0421430:three_prime_UTR 50.0%
ATTGAGAACGGCGGTGTAAG+CGG - chr3_2:70377447-70377466 Msa0421430:three_prime_UTR 50.0%
ATGGGACTGGATCTACCTTC+TGG + chr3_2:70377482-70377501 Msa0421440:CDS 50.0%
AGCCGAAATCTTCTTCCCAC+CGG - chr3_2:70377537-70377556 Msa0421430:three_prime_UTR 50.0%
GTAGAAGATCATACCAGCCC+TGG - chr3_2:70377945-70377964 Msa0421430:three_prime_UTR 50.0%
! GGGCTGGTATGATCTTCTAC+CGG + chr3_2:70377945-70377964 Msa0421440:CDS 50.0%
GGACCTAAGCCACCTAAGAA+GGG + chr3_2:70377971-70377990 Msa0421440:CDS 50.0%
TGACCCTTCTTAGGTGGCTT+AGG - chr3_2:70377977-70377996 Msa0421430:three_prime_UTR 50.0%
TTCTCAGGCTGACCCTTCTT+AGG - chr3_2:70377986-70378005 Msa0421430:three_prime_UTR 50.0%
!! CAACAGCAAGAGCACCAATC+TGG - chr3_2:70378081-70378100 Msa0421430:three_prime_UTR 50.0%
GGCCTATGCCAAGCAAGTTA+AGG + chr3_2:70378132-70378151 Msa0421440:CDS 50.0%
!! GGCCTTAACTTGCTTGGCAT+AGG - chr3_2:70378137-70378156 Msa0421430:three_prime_UTR 50.0%
AAGGCCAATGCAGTTGCACT+TGG + chr3_2:70378151-70378170 Msa0421440:CDS 50.0%
! GGATACAGTCTTGTCACTGG+AGG + chr3_2:70378193-70378212 Msa0421440:CDS 50.0%
GTTTACCGGTCAAGCCAAGA+GGG - chr3_2:70378252-70378271 Msa0421430:intron 50.0%
AGTTTACCGGTCAAGCCAAG+AGG - chr3_2:70378253-70378272 Msa0421430:intron 50.0%
TTACCAATCCTGACTCCTCC+AGG - chr3_2:70378449-70378468 Msa0421430:intron 50.0%
TGAGAGTTACTGCACGGTGA+AGG - chr3_2:70378711-70378730 Msa0421430:three_prime_UTR 50.0%
AGCTCAGACACTAGGAATCC+AGG - chr3_2:70378856-70378875 Msa0421430:three_prime_UTR 50.0%
ATGACTCTACCCTGGCAAGA+TGG + chr3_2:70378915-70378934 Msa0421440:three_prime_UTR 50.0%
TGACTCTACCCTGGCAAGAT+GGG + chr3_2:70378916-70378935 Msa0421440:three_prime_UTR 50.0%
GAAAAACGCCGTCAATGCCG+CGG + chr3_2:70377185-70377204 Msa0421440:CDS 55.0%
! GTTCGATTCCGCGGCATTGA+CGG - chr3_2:70377196-70377215 Msa0421430:three_prime_UTR 55.0%
GGCTTCAATGACTGCGAAGG+AGG - chr3_2:70377240-70377259 Msa0421430:three_prime_UTR 55.0%
TTGAACGTTGACACCCCAGG+TGG - chr3_2:70377396-70377415 Msa0421430:three_prime_UTR 55.0%
AGGTTGAACGTTGACACCCC+AGG - chr3_2:70377399-70377418 Msa0421430:three_prime_UTR 55.0%
TCAACCTTACTCCGGCTCAC+CGG + chr3_2:70377412-70377431 Msa0421440:CDS 55.0%
GTGTAAGCGGCGAAATTCGC+CGG - chr3_2:70377434-70377453 Msa0421430:three_prime_UTR 55.0%
GGACTGGATCTACCTTCTGG+TGG + chr3_2:70377485-70377504 Msa0421440:CDS 55.0%
!! TAGTGGCCTTGTTGCTGCTC+AGG + chr3_2:70377766-70377785 Msa0421440:CDS 55.0%
TAGGTGGCTTAGGTCCCTTC+CGG - chr3_2:70377967-70377986 Msa0421430:three_prime_UTR 55.0%
GGGACCTAAGCCACCTAAGA+AGG + chr3_2:70377970-70377989 Msa0421440:CDS 55.0%
TCAGGCTGACCCTTCTTAGG+TGG - chr3_2:70377983-70378002 Msa0421430:three_prime_UTR 55.0%
!!! TGCTGTTTTCCCCTCCCTTC+AGG + chr3_2:70378039-70378058 Msa0421440:CDS 55.0%
!! GCTGTTTTCCCCTCCCTTCA+GGG + chr3_2:70378040-70378059 Msa0421440:CDS 55.0%
GTTGTGAGGACCACCCTGAA+GGG - chr3_2:70378056-70378075 Msa0421430:three_prime_UTR 55.0%
GGTCCTCACAACCACCAGAT+TGG + chr3_2:70378064-70378083 Msa0421440:CDS 55.0%
GCACCAATCTGGTGGTTGTG+AGG - chr3_2:70378070-70378089 Msa0421430:three_prime_UTR 55.0%
!! CAGCAAGAGCACCAATCTGG+TGG - chr3_2:70378078-70378097 Msa0421430:three_prime_UTR 55.0%
TTGGCATAGGCCTTGAACCC+AGG - chr3_2:70378124-70378143 Msa0421430:three_prime_UTR 55.0%
GATAGTAGTGCCTTGGCACC+TGG + chr3_2:70378428-70378447 Msa0421440:CDS 55.0%
TGCCCCAGCTATGACTTCCA+GGG + chr3_2:70378648-70378667 Msa0421440:CDS 55.0%
ACCCCTGGAAGTCATAGCTG+GGG - chr3_2:70378653-70378672 Msa0421430:three_prime_UTR 55.0%
GACCCCTGGAAGTCATAGCT+GGG - chr3_2:70378654-70378673 Msa0421430:three_prime_UTR 55.0%
AGACCCCTGGAAGTCATAGC+TGG - chr3_2:70378655-70378674 Msa0421430:three_prime_UTR 55.0%
AGCTATGACTTCCAGGGGTC+TGG + chr3_2:70378654-70378673 Msa0421440:CDS 55.0%
TTCCAGGGGTCTGGTTGAGA+AGG + chr3_2:70378663-70378682 Msa0421440:CDS 55.0%
GACTCTACCCTGGCAAGATG+GGG + chr3_2:70378917-70378936 Msa0421440:three_prime_UTR 55.0%
GAAAAACGCCGTCAATGCCG+CGG + chr3_2:70377185-70377204 Msa0421440:CDS 55.0%
! GTTCGATTCCGCGGCATTGA+CGG - chr3_2:70377196-70377215 Msa0421430:three_prime_UTR 55.0%
GGCTTCAATGACTGCGAAGG+AGG - chr3_2:70377240-70377259 Msa0421430:three_prime_UTR 55.0%
TTGAACGTTGACACCCCAGG+TGG - chr3_2:70377396-70377415 Msa0421430:three_prime_UTR 55.0%
AGGTTGAACGTTGACACCCC+AGG - chr3_2:70377399-70377418 Msa0421430:three_prime_UTR 55.0%
TCAACCTTACTCCGGCTCAC+CGG + chr3_2:70377412-70377431 Msa0421440:CDS 55.0%
GTGTAAGCGGCGAAATTCGC+CGG - chr3_2:70377434-70377453 Msa0421430:three_prime_UTR 55.0%
GGACTGGATCTACCTTCTGG+TGG + chr3_2:70377485-70377504 Msa0421440:CDS 55.0%
!! TAGTGGCCTTGTTGCTGCTC+AGG + chr3_2:70377766-70377785 Msa0421440:CDS 55.0%
TAGGTGGCTTAGGTCCCTTC+CGG - chr3_2:70377967-70377986 Msa0421430:three_prime_UTR 55.0%
GGGACCTAAGCCACCTAAGA+AGG + chr3_2:70377970-70377989 Msa0421440:CDS 55.0%
TCAGGCTGACCCTTCTTAGG+TGG - chr3_2:70377983-70378002 Msa0421430:three_prime_UTR 55.0%
!!! TGCTGTTTTCCCCTCCCTTC+AGG + chr3_2:70378039-70378058 Msa0421440:CDS 55.0%
!! GCTGTTTTCCCCTCCCTTCA+GGG + chr3_2:70378040-70378059 Msa0421440:CDS 55.0%
GTTGTGAGGACCACCCTGAA+GGG - chr3_2:70378056-70378075 Msa0421430:three_prime_UTR 55.0%
GGTCCTCACAACCACCAGAT+TGG + chr3_2:70378064-70378083 Msa0421440:CDS 55.0%
GCACCAATCTGGTGGTTGTG+AGG - chr3_2:70378070-70378089 Msa0421430:three_prime_UTR 55.0%
!! CAGCAAGAGCACCAATCTGG+TGG - chr3_2:70378078-70378097 Msa0421430:three_prime_UTR 55.0%
TTGGCATAGGCCTTGAACCC+AGG - chr3_2:70378124-70378143 Msa0421430:three_prime_UTR 55.0%
GATAGTAGTGCCTTGGCACC+TGG + chr3_2:70378428-70378447 Msa0421440:CDS 55.0%
TGCCCCAGCTATGACTTCCA+GGG + chr3_2:70378648-70378667 Msa0421440:CDS 55.0%
ACCCCTGGAAGTCATAGCTG+GGG - chr3_2:70378653-70378672 Msa0421430:three_prime_UTR 55.0%
GACCCCTGGAAGTCATAGCT+GGG - chr3_2:70378654-70378673 Msa0421430:three_prime_UTR 55.0%
AGACCCCTGGAAGTCATAGC+TGG - chr3_2:70378655-70378674 Msa0421430:three_prime_UTR 55.0%
AGCTATGACTTCCAGGGGTC+TGG + chr3_2:70378654-70378673 Msa0421440:CDS 55.0%
TTCCAGGGGTCTGGTTGAGA+AGG + chr3_2:70378663-70378682 Msa0421440:CDS 55.0%
GACTCTACCCTGGCAAGATG+GGG + chr3_2:70378917-70378936 Msa0421440:three_prime_UTR 55.0%
!! GTTGGTGAGGGCGCTTCCTA+GGG - chr3_2:70377261-70377280 Msa0421430:three_prime_UTR 60.0%
!! TGTTGGTGAGGGCGCTTCCT+AGG - chr3_2:70377262-70377281 Msa0421430:three_prime_UTR 60.0%
ACGGTTACCGGGCATGCCTT+CGG - chr3_2:70377291-70377310 Msa0421430:three_prime_UTR 60.0%
CCGCCGTAGTAACGGTTACC+GGG - chr3_2:70377302-70377321 Msa0421430:three_prime_UTR 60.0%
CCCGGTAACCGTTACTACGG+CGG + chr3_2:70377299-70377318 Msa0421440:CDS 60.0%
GCCGCCGTAGTAACGGTTAC+CGG - chr3_2:70377303-70377322 Msa0421430:three_prime_UTR 60.0%
AACGTTGACACCCCAGGTGG+CGG - chr3_2:70377393-70377412 Msa0421430:three_prime_UTR 60.0%
AGTTTAAGGGGTCCCAGGGC+TGG + chr3_2:70377929-70377948 Msa0421440:CDS 60.0%
! GTTTTCCCCTCCCTTCAGGG+TGG + chr3_2:70378043-70378062 Msa0421440:CDS 60.0%
TGAGGACCACCCTGAAGGGA+GGG - chr3_2:70378052-70378071 Msa0421430:three_prime_UTR 60.0%
GGTTGTGAGGACCACCCTGA+AGG - chr3_2:70378057-70378076 Msa0421430:three_prime_UTR 60.0%
TTGAAACAGGCCACCACGCC+TGG + chr3_2:70378103-70378122 Msa0421440:CDS 60.0%
TGAAACAGGCCACCACGCCT+GGG + chr3_2:70378104-70378123 Msa0421440:CDS 60.0%
ATAGGCCTTGAACCCAGGCG+TGG - chr3_2:70378119-70378138 Msa0421430:three_prime_UTR 60.0%
TTGTGGGATCTCCGCCCTCT+TGG + chr3_2:70378235-70378254 Msa0421440:CDS 60.0%
TACCGGTCAAGCCAAGAGGG+CGG - chr3_2:70378249-70378268 Msa0421430:intron 60.0%
AGTAGTGCCTTGGCACCTGG+AGG + chr3_2:70378431-70378450 Msa0421440:CDS 60.0%
GCACCTGGAGGAGTCAGGAT+TGG + chr3_2:70378443-70378462 Msa0421440:CDS 60.0%
GTGCCCCAGCTATGACTTCC+AGG + chr3_2:70378647-70378666 Msa0421440:CDS 60.0%
GCCCCAGCTATGACTTCCAG+GGG + chr3_2:70378649-70378668 Msa0421440:CDS 60.0%
GTCCTTCTCAACCAGACCCC+TGG - chr3_2:70378668-70378687 Msa0421430:three_prime_UTR 60.0%
!! GTTGGTGAGGGCGCTTCCTA+GGG - chr3_2:70377261-70377280 Msa0421430:three_prime_UTR 60.0%
!! TGTTGGTGAGGGCGCTTCCT+AGG - chr3_2:70377262-70377281 Msa0421430:three_prime_UTR 60.0%
ACGGTTACCGGGCATGCCTT+CGG - chr3_2:70377291-70377310 Msa0421430:three_prime_UTR 60.0%
CCGCCGTAGTAACGGTTACC+GGG - chr3_2:70377302-70377321 Msa0421430:three_prime_UTR 60.0%
CCCGGTAACCGTTACTACGG+CGG + chr3_2:70377299-70377318 Msa0421440:CDS 60.0%
GCCGCCGTAGTAACGGTTAC+CGG - chr3_2:70377303-70377322 Msa0421430:three_prime_UTR 60.0%
AACGTTGACACCCCAGGTGG+CGG - chr3_2:70377393-70377412 Msa0421430:three_prime_UTR 60.0%
AGTTTAAGGGGTCCCAGGGC+TGG + chr3_2:70377929-70377948 Msa0421440:CDS 60.0%
! GTTTTCCCCTCCCTTCAGGG+TGG + chr3_2:70378043-70378062 Msa0421440:CDS 60.0%
TGAGGACCACCCTGAAGGGA+GGG - chr3_2:70378052-70378071 Msa0421430:three_prime_UTR 60.0%
GGTTGTGAGGACCACCCTGA+AGG - chr3_2:70378057-70378076 Msa0421430:three_prime_UTR 60.0%
TTGAAACAGGCCACCACGCC+TGG + chr3_2:70378103-70378122 Msa0421440:CDS 60.0%
TGAAACAGGCCACCACGCCT+GGG + chr3_2:70378104-70378123 Msa0421440:CDS 60.0%
ATAGGCCTTGAACCCAGGCG+TGG - chr3_2:70378119-70378138 Msa0421430:three_prime_UTR 60.0%
TTGTGGGATCTCCGCCCTCT+TGG + chr3_2:70378235-70378254 Msa0421440:CDS 60.0%
TACCGGTCAAGCCAAGAGGG+CGG - chr3_2:70378249-70378268 Msa0421430:intron 60.0%
AGTAGTGCCTTGGCACCTGG+AGG + chr3_2:70378431-70378450 Msa0421440:CDS 60.0%
GCACCTGGAGGAGTCAGGAT+TGG + chr3_2:70378443-70378462 Msa0421440:CDS 60.0%
GTGCCCCAGCTATGACTTCC+AGG + chr3_2:70378647-70378666 Msa0421440:CDS 60.0%
GCCCCAGCTATGACTTCCAG+GGG + chr3_2:70378649-70378668 Msa0421440:CDS 60.0%
GTCCTTCTCAACCAGACCCC+TGG - chr3_2:70378668-70378687 Msa0421430:three_prime_UTR 60.0%
TTCGCCGGTGAGCCGGAGTA+AGG - chr3_2:70377419-70377438 Msa0421430:three_prime_UTR 65.0%
GGCGAAATTCGCCGGTGAGC+CGG - chr3_2:70377426-70377445 Msa0421430:three_prime_UTR 65.0%
GAGGACCACCCTGAAGGGAG+GGG - chr3_2:70378051-70378070 Msa0421430:three_prime_UTR 65.0%
GTGAGGACCACCCTGAAGGG+AGG - chr3_2:70378053-70378072 Msa0421430:three_prime_UTR 65.0%
! CTCCGCCCTCTTGGCTTGAC+CGG + chr3_2:70378244-70378263 Msa0421440:CDS 65.0%
CCTGACTCCTCCAGGTGCCA+AGG - chr3_2:70378441-70378460 Msa0421430:three_prime_UTR 65.0%
CCTTGGCACCTGGAGGAGTC+AGG + chr3_2:70378438-70378457 Msa0421440:CDS 65.0%
TTCGCCGGTGAGCCGGAGTA+AGG - chr3_2:70377419-70377438 Msa0421430:three_prime_UTR 65.0%
GGCGAAATTCGCCGGTGAGC+CGG - chr3_2:70377426-70377445 Msa0421430:three_prime_UTR 65.0%
GAGGACCACCCTGAAGGGAG+GGG - chr3_2:70378051-70378070 Msa0421430:three_prime_UTR 65.0%
GTGAGGACCACCCTGAAGGG+AGG - chr3_2:70378053-70378072 Msa0421430:three_prime_UTR 65.0%
! CTCCGCCCTCTTGGCTTGAC+CGG + chr3_2:70378244-70378263 Msa0421440:CDS 65.0%
CCTGACTCCTCCAGGTGCCA+AGG - chr3_2:70378441-70378460 Msa0421430:three_prime_UTR 65.0%
CCTTGGCACCTGGAGGAGTC+AGG + chr3_2:70378438-70378457 Msa0421440:CDS 65.0%
! AGGCGGTGAGAGCGCGTGAG+CGG - chr3_2:70377358-70377377 Msa0421430:three_prime_UTR 70.0%
! GGCGGCGTCGAGATGGAAGG+CGG - chr3_2:70377375-70377394 Msa0421430:three_prime_UTR 70.0%
! GGTGGCGGCGTCGAGATGGA+AGG - chr3_2:70377378-70377397 Msa0421430:three_prime_UTR 70.0%
TCCATCTCGACGCCGCCACC+TGG + chr3_2:70377378-70377397 Msa0421440:CDS 70.0%
CCATCTCGACGCCGCCACCT+GGG + chr3_2:70377379-70377398 Msa0421440:CDS 70.0%
CATCTCGACGCCGCCACCTG+GGG + chr3_2:70377380-70377399 Msa0421440:CDS 70.0%
GGCCACCACGCCTGGGTTCA+AGG + chr3_2:70378111-70378130 Msa0421440:CDS 70.0%
GGCCTTGAACCCAGGCGTGG+TGG - chr3_2:70378116-70378135 Msa0421430:three_prime_UTR 70.0%
! AGGCGGTGAGAGCGCGTGAG+CGG - chr3_2:70377358-70377377 Msa0421430:three_prime_UTR 70.0%
! GGCGGCGTCGAGATGGAAGG+CGG - chr3_2:70377375-70377394 Msa0421430:three_prime_UTR 70.0%
! GGTGGCGGCGTCGAGATGGA+AGG - chr3_2:70377378-70377397 Msa0421430:three_prime_UTR 70.0%
TCCATCTCGACGCCGCCACC+TGG + chr3_2:70377378-70377397 Msa0421440:CDS 70.0%
CCATCTCGACGCCGCCACCT+GGG + chr3_2:70377379-70377398 Msa0421440:CDS 70.0%
CATCTCGACGCCGCCACCTG+GGG + chr3_2:70377380-70377399 Msa0421440:CDS 70.0%
GGCCACCACGCCTGGGTTCA+AGG + chr3_2:70378111-70378130 Msa0421440:CDS 70.0%
GGCCTTGAACCCAGGCGTGG+TGG - chr3_2:70378116-70378135 Msa0421430:three_prime_UTR 70.0%
! CCCAGGTGGCGGCGTCGAGA+TGG - chr3_2:70377382-70377401 Msa0421430:three_prime_UTR 75.0%
! CCCAGGTGGCGGCGTCGAGA+TGG - chr3_2:70377382-70377401 Msa0421430:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 70377023 70379198 70377023 ID=Msa0421440;Name=Msa0421440
chr3_2 mRNA 70377023 70379198 70377023 ID=Msa0421440-mRNA-1;Parent=Msa0421440;Name=Msa0421440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87|1|1|1|1|1|4|307|471
chr3_2 exon 70377023 70377787 70377023 ID=Msa0421440-mRNA-1:exon:16861;Parent=Msa0421440-mRNA-1
chr3_2 exon 70377875 70378265 70377875 ID=Msa0421440-mRNA-1:exon:16862;Parent=Msa0421440-mRNA-1
chr3_2 exon 70378363 70378464 70378363 ID=Msa0421440-mRNA-1:exon:16863;Parent=Msa0421440-mRNA-1
chr3_2 exon 70378647 70379198 70378647 ID=Msa0421440-mRNA-1:exon:16864;Parent=Msa0421440-mRNA-1
chr3_2 five_prime_UTR 70377023 70377109 70377023 ID=Msa0421440-mRNA-1:five_prime_utr;Parent=Msa0421440-mRNA-1
chr3_2 CDS 70377110 70377787 70377110 ID=Msa0421440-mRNA-1:cds;Parent=Msa0421440-mRNA-1
chr3_2 CDS 70377875 70378265 70377875 ID=Msa0421440-mRNA-1:cds;Parent=Msa0421440-mRNA-1
chr3_2 CDS 70378363 70378464 70378363 ID=Msa0421440-mRNA-1:cds;Parent=Msa0421440-mRNA-1
chr3_2 CDS 70378647 70378891 70378647 ID=Msa0421440-mRNA-1:cds;Parent=Msa0421440-mRNA-1
chr3_2 three_prime_UTR 70378892 70379198 70378892 ID=Msa0421440-mRNA-1:three_prime_utr;Parent=Msa0421440-mRNA-1
Gene Sequence

>Msa0421440

ATGGATCCAGTTAGTGAATGGGGAAACACACCATTAGTAACCGTAGATCCAGAAATCCACGACCTAATAGAAAAAGAAAAACGCCGTCAATGCCGCGGAATCGAACTCATTGCCTCAGAAAATTTCACCTCCTTCGCAGTCATTGAAGCCCTAGGAAGCGCCCTCACCAACAAATATTCCGAAGGCATGCCCGGTAACCGTTACTACGGCGGCAACGAATTCATCGACCAGATCGAAAACATTTGCCGCTCACGCGCTCTCACCGCCTTCCATCTCGACGCCGCCACCTGGGGTGTCAACGTTCAACCTTACTCCGGCTCACCGGCGAATTTCGCCGCTTACACCGCCGTTCTCAATCCTCATGATAGGATCATGGGACTGGATCTACCTTCTGGTGGACATTTGACTCATGGTTACTATACTTCCGGTGGGAAGAAGATTTCGGCTACTTCGATTTACTTTGAGAGTTTGCCGTATAAGGTGAATTCGACCACGGGGTTTATTGATTATGATAGGTTGGAAGAGAAAGCTTTGGATTTTAGACCAAAGTTGATTATTTGTGGTGGAAGTGCTTATCCTAGAGATTGGGATTATGGAAGGTTTAGACAAGTTGCTGATAAGTGTGGTGCTCTTTTGCTTTGTGATATGGCTCATATTAGTGGCCTTGTTGCTGCTCAGGAAGCTAACAATCCTTTTGAGTTCTGTGACATTGTCACAACAACAACCCATAAGAGTTTAAGGGGTCCCAGGGCTGGTATGATCTTCTACCGGAAGGGACCTAAGCCACCTAAGAAGGGTCAGCCTGAGAATGCTGTTTATGATTTTGAAGACAAAATCAACTTTGCTGTTTTCCCCTCCCTTCAGGGTGGTCCTCACAACCACCAGATTGGTGCTCTTGCTGTTGCTTTGAAACAGGCCACCACGCCTGGGTTCAAGGCCTATGCCAAGCAAGTTAAGGCCAATGCAGTTGCACTTGGAAATTACTTGATGAGCAAGGGATACAGTCTTGTCACTGGAGGAACTGAAAATCATCTTGTCTTGTGGGATCTCCGCCCTCTTGGCTTGACCGGCAATAAGGTGGAAAAACTTTGTGACCTCTGTAACATTACTGTGAACAAGAATGCTGTTTTTGGTGATAGTAGTGCCTTGGCACCTGGAGGAGTCAGGATTGGTGCCCCAGCTATGACTTCCAGGGGTCTGGTTGAGAAGGACTTCGAGCAGATTGCAGAGTTCCTTCACCGTGCAGTAACTCTCACACTAGAGATTCAAAAGGAATATGGTAAACTTTTGAAGGATTTCAACAAGGGCTTAGTGAACAACAAAGCTCTTGAAGACCTTAAAGCTGATGTTGAGAAGTTTTCAGCATCATTTGATATGCCTGGATTCCTAGTGTCTGAGCTAAAGTACAAGGATTAG
Protein sequence

>Msa0421440

MDPVSEWGNTPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENICRSRALTAFHLDAATWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYGRFRQVADKCGALLLCDMAHISGLVAAQEANNPFEFCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQATTPGFKAYAKQVKANAVALGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIAEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKALEDLKADVEKFSASFDMPGFLVSELKYKD*