Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374460 | XP_003602063.1 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374460 | sp|Q9XHZ8|Y1178_ARATH | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.39e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374460 | G7J501 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0374460 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374460 | Msa0374550 | 0.991127 | 4.969298e-186 | -8.615850e-47 |
| Msa0374460 | Msa0374590 | 0.993055 | 3.682166e-197 | -8.615850e-47 |
| Msa0374460 | Msa0422350 | 0.907808 | 3.395706e-81 | -8.615850e-47 |
| Msa0374460 | Msa0470430 | 0.979460 | 5.137536e-148 | -8.615850e-47 |
| Msa0374460 | Msa0525390 | 0.951384 | 2.289927e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374460 | MtrunA17_Chr3g0124921 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Msa0374460 | MtrunA17_Chr1g0159831 | 72.727 | 330 | 81 | 5 | 1 | 323 | 1 | 328 | 2.28e-173 | 484 |
| Msa0374460 | MtrunA17_Chr3g0103031 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 9.84e-116 | 337 |
| Msa0374460 | MtrunA17_Chr5g0447111 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 8.75e-97 | 289 |
| Msa0374460 | MtrunA17_Chr5g0447191 | 40.741 | 189 | 106 | 3 | 135 | 321 | 3 | 187 | 3.52e-38 | 134 |
| Msa0374460 | MtrunA17_Chr4g0029841 | 28.283 | 198 | 136 | 3 | 128 | 324 | 89 | 281 | 3.99e-17 | 80.1 |
| Msa0374460 | MtrunA17_Chr3g0125321 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 5.85e-12 | 65.1 |
| Msa0374460 | MtrunA17_Chr7g0259851 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 5.86e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374460 | AT1G21780.2 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0374460 | AT1G21780.1 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0374460 | AT1G55760.1 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 9.27e-111 | 325 |
| Msa0374460 | AT2G39760.2 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.03e-14 | 73.6 |
| Msa0374460 | AT2G39760.4 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0374460 | AT2G39760.3 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0374460 | AT2G39760.1 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.86e-14 | 73.2 |
| Msa0374460 | AT5G13060.1 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.10e-11 | 64.7 |
| Msa0374460 | AT3G56230.1 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.70e-11 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3_1:-73927774 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3_1:+73927648 | Msa0374460:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3_1:-73925097 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3_1:-73927707 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3_1:+73925099 | Msa0374460:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3_1:-73926586 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3_1:+73927463 | Msa0374460:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3_1:+73924930 | Msa0374460:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3_1:-73927404 | None:intergenic |
| ATGCCCTTGGACCATGTAAA+TGG | 0.341441 | 3_1:+73927810 | Msa0374460:three_prime_UTR |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3_1:+73927719 | Msa0374460:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3_1:+73925145 | Msa0374460:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3_1:-73927773 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3_1:+73924838 | Msa0374460:exon |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3_1:+73925175 | Msa0374460:CDS |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3_1:-73925103 | None:intergenic |
| GAATAGTTTAGTTAATTGTA+TGG | 0.406977 | 3_1:+73927777 | Msa0374460:exon |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3_1:+73927510 | Msa0374460:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3_1:+73926532 | Msa0374460:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3_1:+73926489 | Msa0374460:intron |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3_1:-73927340 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3_1:+73927438 | Msa0374460:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3_1:+73926510 | Msa0374460:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3_1:+73927486 | Msa0374460:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3_1:-73927580 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3_1:-73927560 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3_1:-73927248 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3_1:-73927769 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3_1:-73925173 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3_1:-73925130 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3_1:-73926598 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3_1:+73927592 | Msa0374460:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3_1:-73927242 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3_1:+73927621 | Msa0374460:CDS |
| ATCCGCCATGGTTGGAGAGA+TGG | 0.488556 | 3_1:-73924834 | None:intergenic |
| TGGGAAAATTACTATGCCCT+TGG | 0.497075 | 3_1:+73927797 | Msa0374460:three_prime_UTR |
| AATAGTTTAGTTAATTGTAT+GGG | 0.497219 | 3_1:+73927778 | Msa0374460:exon |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3_1:+73924936 | Msa0374460:CDS |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3_1:+73924923 | Msa0374460:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3_1:+73924837 | Msa0374460:exon |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3_1:-73927284 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3_1:-73927430 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3_1:+73927587 | Msa0374460:CDS |
| ACATTGATATACCATTTACA+TGG | 0.543059 | 3_1:-73927821 | None:intergenic |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3_1:-73924932 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3_1:+73927513 | Msa0374460:CDS |
| TATACCATTTACATGGTCCA+AGG | 0.562998 | 3_1:-73927814 | None:intergenic |
| TCAACCCTATCCGCCATGGT+TGG | 0.563052 | 3_1:-73924842 | None:intergenic |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3_1:+73927183 | Msa0374460:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3_1:+73926480 | Msa0374460:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3_1:+73926533 | Msa0374460:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3_1:+73927172 | Msa0374460:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3_1:-73927180 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3_1:-73927301 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3_1:-73927289 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3_1:+73927305 | Msa0374460:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3_1:-73927253 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3_1:-73926556 | None:intergenic |
| ACACTCCATCTCTCCAACCA+TGG | 0.595282 | 3_1:+73924829 | Msa0374460:exon |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3_1:-73927348 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3_1:-73927254 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3_1:+73927248 | Msa0374460:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3_1:+73927285 | Msa0374460:CDS |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3_1:+73924884 | Msa0374460:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3_1:+73927362 | Msa0374460:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3_1:-73925174 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3_1:-73925127 | None:intergenic |
| ATACCATTTACATGGTCCAA+GGG | 0.630829 | 3_1:-73927813 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3_1:-73924846 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3_1:-73925131 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3_1:-73925126 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3_1:+73924867 | Msa0374460:CDS |
| CTCCATCTCTCCAACCATGG+CGG | 0.697206 | 3_1:+73924832 | Msa0374460:exon |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3_1:-73925158 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3_1:+73927533 | Msa0374460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | - | chr3_1:73927006-73927025 | None:intergenic | 10.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | + | chr3_1:73925305-73925324 | Msa0374460:intron | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | + | chr3_1:73927648-73927667 | Msa0374460:CDS | 15.0% |
| !! | AATAGTTTAGTTAATTGTAT+GGG | + | chr3_1:73927778-73927797 | Msa0374460:exon | 15.0% |
| !!! | CAATTCGTTTTTTTTTTTTC+AGG | + | chr3_1:73925029-73925048 | Msa0374460:intron | 20.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | - | chr3_1:73926970-73926989 | None:intergenic | 20.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | + | chr3_1:73927015-73927034 | Msa0374460:intron | 20.0% |
| !! | ACAATTAACTAAACTATTCT+GGG | - | chr3_1:73927776-73927795 | None:intergenic | 20.0% |
| !! | TACAATTAACTAAACTATTC+TGG | - | chr3_1:73927777-73927796 | None:intergenic | 20.0% |
| !! | GAATAGTTTAGTTAATTGTA+TGG | + | chr3_1:73927777-73927796 | Msa0374460:exon | 20.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | - | chr3_1:73924911-73924930 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | + | chr3_1:73925053-73925072 | Msa0374460:CDS | 25.0% |
| !! | AACAAATAACGAAAAAGTGT+TGG | - | chr3_1:73925216-73925235 | None:intergenic | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | - | chr3_1:73925334-73925353 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | + | chr3_1:73925355-73925374 | Msa0374460:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | + | chr3_1:73925696-73925715 | Msa0374460:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | - | chr3_1:73925811-73925830 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | - | chr3_1:73925812-73925831 | None:intergenic | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | + | chr3_1:73925953-73925972 | Msa0374460:intron | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | + | chr3_1:73925954-73925973 | Msa0374460:intron | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | + | chr3_1:73926014-73926033 | Msa0374460:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | - | chr3_1:73926026-73926045 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | - | chr3_1:73926048-73926067 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | - | chr3_1:73926098-73926117 | None:intergenic | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | + | chr3_1:73926135-73926154 | Msa0374460:intron | 25.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | - | chr3_1:73926219-73926238 | None:intergenic | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | - | chr3_1:73926601-73926620 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | - | chr3_1:73926625-73926644 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | + | chr3_1:73926637-73926656 | Msa0374460:intron | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | - | chr3_1:73926786-73926805 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | + | chr3_1:73926841-73926860 | Msa0374460:intron | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | + | chr3_1:73926842-73926861 | Msa0374460:intron | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | + | chr3_1:73927463-73927482 | Msa0374460:CDS | 25.0% |
| ! | ACATTGATATACCATTTACA+TGG | - | chr3_1:73927824-73927843 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCTTTTCTTGGT+TGG | + | chr3_1:73924774-73924793 | Msa0374460:five_prime_UTR | 30.0% |
| CAATGGAAAATCGAAAACTT+CGG | + | chr3_1:73924884-73924903 | Msa0374460:CDS | 30.0% | |
| ! | TCAGGTACTTTTCAATAGTA+AGG | + | chr3_1:73925047-73925066 | Msa0374460:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | - | chr3_1:73925100-73925119 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | + | chr3_1:73925099-73925118 | Msa0374460:CDS | 30.0% |
| AGAACGTTAAAGTTTGTGTA+TGG | + | chr3_1:73925283-73925302 | Msa0374460:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | - | chr3_1:73925514-73925533 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | - | chr3_1:73925695-73925714 | None:intergenic | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | + | chr3_1:73925727-73925746 | Msa0374460:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | - | chr3_1:73926057-73926076 | None:intergenic | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | - | chr3_1:73926150-73926169 | None:intergenic | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | + | chr3_1:73926157-73926176 | Msa0374460:intron | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | - | chr3_1:73926220-73926239 | None:intergenic | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | - | chr3_1:73926333-73926352 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | + | chr3_1:73926347-73926366 | Msa0374460:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | + | chr3_1:73926375-73926394 | Msa0374460:intron | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | + | chr3_1:73926409-73926428 | Msa0374460:intron | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | + | chr3_1:73926445-73926464 | Msa0374460:intron | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | - | chr3_1:73926559-73926578 | None:intergenic | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | - | chr3_1:73926589-73926608 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | + | chr3_1:73926640-73926659 | Msa0374460:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | - | chr3_1:73926706-73926725 | None:intergenic | 30.0% | |
| ! | TGTTTTGCATGCATTATAAC+TGG | + | chr3_1:73926824-73926843 | Msa0374460:intron | 30.0% |
| AAATGAAAGAAAAGGGTTGT+TGG | + | chr3_1:73926849-73926868 | Msa0374460:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | + | chr3_1:73926889-73926908 | Msa0374460:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | + | chr3_1:73926897-73926916 | Msa0374460:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | + | chr3_1:73926898-73926917 | Msa0374460:intron | 30.0% | |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | - | chr3_1:73926962-73926981 | None:intergenic | 30.0% |
| AATTATAGCAATTATTCCGG+AGG | + | chr3_1:73927018-73927037 | Msa0374460:intron | 30.0% | |
| ! | TGATCTATTCTTTTGAACTC+AGG | + | chr3_1:73927149-73927168 | Msa0374460:intron | 30.0% |
| ! | GATCTATTCTTTTGAACTCA+GGG | + | chr3_1:73927150-73927169 | Msa0374460:intron | 30.0% |
| GCAGCTAATAAGTATGATAT+TGG | + | chr3_1:73927510-73927529 | Msa0374460:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | + | chr3_1:73927513-73927532 | Msa0374460:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | + | chr3_1:73927621-73927640 | Msa0374460:CDS | 30.0% | |
| TTAACTAAACTATTCTGGGT+TGG | - | chr3_1:73927772-73927791 | None:intergenic | 30.0% | |
| ! | CACGTTTCTCTTTCTTTTCT+TGG | + | chr3_1:73924770-73924789 | Msa0374460:five_prime_UTR | 35.0% |
| AAATCTGATCCTTTCAAGCT+CGG | + | chr3_1:73924923-73924942 | Msa0374460:CDS | 35.0% | |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | - | chr3_1:73925086-73925105 | None:intergenic | 35.0% |
| TGCTCCTTAGAAACTTTAGA+AGG | - | chr3_1:73925106-73925125 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | - | chr3_1:73925176-73925195 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | - | chr3_1:73925177-73925196 | None:intergenic | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | - | chr3_1:73925196-73925215 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | - | chr3_1:73925483-73925502 | None:intergenic | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | + | chr3_1:73925481-73925500 | Msa0374460:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | + | chr3_1:73925544-73925563 | Msa0374460:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | - | chr3_1:73925575-73925594 | None:intergenic | 35.0% |
| GGCTATAGGAAAATAACACA+TGG | + | chr3_1:73925579-73925598 | Msa0374460:intron | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | + | chr3_1:73925638-73925657 | Msa0374460:intron | 35.0% | |
| !! | CTATTGTACTCGGTTTGTTA+GGG | + | chr3_1:73925737-73925756 | Msa0374460:intron | 35.0% |
| TCTCTATCCAATGTCTTAGA+CGG | + | chr3_1:73926241-73926260 | Msa0374460:intron | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | + | chr3_1:73926280-73926299 | Msa0374460:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | - | chr3_1:73926293-73926312 | None:intergenic | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | + | chr3_1:73926294-73926313 | Msa0374460:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | + | chr3_1:73926339-73926358 | Msa0374460:intron | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | - | chr3_1:73926390-73926409 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | - | chr3_1:73926416-73926435 | None:intergenic | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | - | chr3_1:73926466-73926485 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | + | chr3_1:73926480-73926499 | Msa0374460:intron | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | + | chr3_1:73926533-73926552 | Msa0374460:CDS | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | - | chr3_1:73926647-73926666 | None:intergenic | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | + | chr3_1:73926728-73926747 | Msa0374460:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | + | chr3_1:73926776-73926795 | Msa0374460:intron | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | + | chr3_1:73926795-73926814 | Msa0374460:intron | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | - | chr3_1:73926952-73926971 | None:intergenic | 35.0% | |
| AAATATGATACCAGTGCAGA+GGG | - | chr3_1:73927112-73927131 | None:intergenic | 35.0% | |
| AAAATATGATACCAGTGCAG+AGG | - | chr3_1:73927113-73927132 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | - | chr3_1:73927183-73927202 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | + | chr3_1:73927183-73927202 | Msa0374460:CDS | 35.0% | |
| !! | TGAAACATGCTTTGAAACAC+AGG | - | chr3_1:73927351-73927370 | None:intergenic | 35.0% |
| CAAGTGACATGTCTTCAATA+TGG | - | chr3_1:73927407-73927426 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | + | chr3_1:73927533-73927552 | Msa0374460:CDS | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | - | chr3_1:73927563-73927582 | None:intergenic | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | - | chr3_1:73927583-73927602 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | + | chr3_1:73927587-73927606 | Msa0374460:CDS | 35.0% | |
| ATACCATTTACATGGTCCAA+GGG | - | chr3_1:73927816-73927835 | None:intergenic | 35.0% | |
| TATACCATTTACATGGTCCA+AGG | - | chr3_1:73927817-73927836 | None:intergenic | 35.0% | |
| ! | TTTTCTTGGTTGGACGAGAA+TGG | + | chr3_1:73924784-73924803 | Msa0374460:five_prime_UTR | 40.0% |
| CTGTTGCAAGATTAGCACAA+TGG | + | chr3_1:73924867-73924886 | Msa0374460:CDS | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | - | chr3_1:73925134-73925153 | None:intergenic | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | + | chr3_1:73925175-73925194 | Msa0374460:CDS | 40.0% |
| ACAATACTCGGTAGCATTTG+TGG | - | chr3_1:73925471-73925490 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | + | chr3_1:73925602-73925621 | Msa0374460:intron | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | + | chr3_1:73925603-73925622 | Msa0374460:intron | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | - | chr3_1:73925656-73925675 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | + | chr3_1:73925655-73925674 | Msa0374460:intron | 40.0% | |
| ! | GCTATTGTACTCGGTTTGTT+AGG | + | chr3_1:73925736-73925755 | Msa0374460:intron | 40.0% |
| GGATCGACTATAGTGATCTT+AGG | + | chr3_1:73926262-73926281 | Msa0374460:intron | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | - | chr3_1:73926324-73926343 | None:intergenic | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | - | chr3_1:73926325-73926344 | None:intergenic | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | + | chr3_1:73926384-73926403 | Msa0374460:intron | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | + | chr3_1:73926489-73926508 | Msa0374460:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | + | chr3_1:73926532-73926551 | Msa0374460:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | - | chr3_1:73926742-73926761 | None:intergenic | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | - | chr3_1:73926951-73926970 | None:intergenic | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | - | chr3_1:73927037-73927056 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | - | chr3_1:73927086-73927105 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | - | chr3_1:73927087-73927106 | None:intergenic | 40.0% | |
| AATATGATACCAGTGCAGAG+GGG | - | chr3_1:73927111-73927130 | None:intergenic | 40.0% | |
| ! | CTATTCTTTTGAACTCAGGG+TGG | + | chr3_1:73927153-73927172 | Msa0374460:intron | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | + | chr3_1:73927172-73927191 | Msa0374460:CDS | 40.0% |
| CATGTTTCATCACAACCTGA+AGG | + | chr3_1:73927362-73927381 | Msa0374460:CDS | 40.0% | |
| ! | TTGACGACTCTTTTTCCTTC+AGG | - | chr3_1:73927380-73927399 | None:intergenic | 40.0% |
| GCTCTTCGAAGTTACTTGTA+TGG | + | chr3_1:73927438-73927457 | Msa0374460:CDS | 40.0% | |
| AAACACTGTCTTGCATTGCT+TGG | + | chr3_1:73927486-73927505 | Msa0374460:CDS | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | + | chr3_1:73927592-73927611 | Msa0374460:CDS | 40.0% | |
| TGGGAAAATTACTATGCCCT+TGG | + | chr3_1:73927797-73927816 | Msa0374460:three_prime_UTR | 40.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | + | chr3_1:73924930-73924949 | Msa0374460:CDS | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | - | chr3_1:73924935-73924954 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | - | chr3_1:73925133-73925152 | None:intergenic | 45.0% | |
| AGCATTTGTGGTGGTTCGTA+GGG | - | chr3_1:73925459-73925478 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | - | chr3_1:73925460-73925479 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | - | chr3_1:73925468-73925487 | None:intergenic | 45.0% | |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | + | chr3_1:73925535-73925554 | Msa0374460:intron | 45.0% |
| TCCATATGGATCAGCCATGT+GGG | + | chr3_1:73925558-73925577 | Msa0374460:intron | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | - | chr3_1:73925616-73925635 | None:intergenic | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | + | chr3_1:73925769-73925788 | Msa0374460:intron | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | - | chr3_1:73925777-73925796 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | - | chr3_1:73925778-73925797 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | - | chr3_1:73925798-73925817 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | - | chr3_1:73925799-73925818 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | - | chr3_1:73926251-73926270 | None:intergenic | 45.0% |
| CAATGATCAAGGAAGACAGG+GGG | - | chr3_1:73926322-73926341 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | - | chr3_1:73926323-73926342 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | + | chr3_1:73926510-73926529 | Msa0374460:CDS | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | - | chr3_1:73926683-73926702 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | - | chr3_1:73927304-73927323 | None:intergenic | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | + | chr3_1:73927305-73927324 | Msa0374460:CDS | 45.0% | |
| !! | GCTTTGAAACACAGGAGAAC+TGG | - | chr3_1:73927343-73927362 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | + | chr3_1:73927706-73927725 | Msa0374460:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | + | chr3_1:73927707-73927726 | Msa0374460:CDS | 45.0% |
| ATGCCCTTGGACCATGTAAA+TGG | + | chr3_1:73927810-73927829 | Msa0374460:three_prime_UTR | 45.0% | |
| ACACTCCATCTCTCCAACCA+TGG | + | chr3_1:73924829-73924848 | Msa0374460:exon | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | + | chr3_1:73924936-73924955 | Msa0374460:CDS | 50.0% |
| GAATGAAACGAGCAACGGGT+GGG | - | chr3_1:73925129-73925148 | None:intergenic | 50.0% | |
| AGAATGAAACGAGCAACGGG+TGG | - | chr3_1:73925130-73925149 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | - | chr3_1:73925456-73925475 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | + | chr3_1:73925557-73925576 | Msa0374460:intron | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | - | chr3_1:73925770-73925789 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | + | chr3_1:73925768-73925787 | Msa0374460:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | + | chr3_1:73925781-73925800 | Msa0374460:intron | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | - | chr3_1:73926684-73926703 | None:intergenic | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | - | chr3_1:73927256-73927275 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | - | chr3_1:73927257-73927276 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | - | chr3_1:73927287-73927306 | None:intergenic | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | + | chr3_1:73927285-73927304 | Msa0374460:CDS | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | - | chr3_1:73927292-73927311 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | - | chr3_1:73927433-73927452 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | - | chr3_1:73927710-73927729 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | + | chr3_1:73927719-73927738 | Msa0374460:CDS | 50.0% | |
| CTCCATCTCTCCAACCATGG+CGG | + | chr3_1:73924832-73924851 | Msa0374460:exon | 55.0% | |
| ATCCGCCATGGTTGGAGAGA+TGG | - | chr3_1:73924837-73924856 | None:intergenic | 55.0% | |
| !! | TCTCTCCAACCATGGCGGAT+AGG | + | chr3_1:73924837-73924856 | Msa0374460:exon | 55.0% |
| !! | CTCTCCAACCATGGCGGATA+GGG | + | chr3_1:73924838-73924857 | Msa0374460:exon | 55.0% |
| TCAACCCTATCCGCCATGGT+TGG | - | chr3_1:73924845-73924864 | None:intergenic | 55.0% | |
| AGTGTCAACCCTATCCGCCA+TGG | - | chr3_1:73924849-73924868 | None:intergenic | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | + | chr3_1:73925145-73925164 | Msa0374460:CDS | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | - | chr3_1:73925562-73925581 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | + | chr3_1:73925565-73925584 | Msa0374460:intron | 55.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | + | chr3_1:73925664-73925683 | Msa0374460:intron | 55.0% | |
| CTTGCGGGAAGAACCAGCGA+CGG | - | chr3_1:73925161-73925180 | None:intergenic | 60.0% | |
| CGGACATACCGCTTGCTCCT+AGG | - | chr3_1:73925675-73925694 | None:intergenic | 60.0% | |
| GACACTGAACCCCTCTGCAC+TGG | + | chr3_1:73927099-73927118 | Msa0374460:intron | 60.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | - | chr3_1:73925447-73925466 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | - | chr3_1:73926315-73926334 | None:intergenic | 65.0% |
| CGAGCATGCGGGAGAGGCAA+TGG | - | chr3_1:73927245-73927264 | None:intergenic | 65.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | - | chr3_1:73927251-73927270 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | + | chr3_1:73927248-73927267 | Msa0374460:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 73924745 | 73927891 | 73924745 | ID=Msa0374460;Name=Msa0374460 |
| chr3_1 | mRNA | 73924745 | 73927891 | 73924745 | ID=Msa0374460-mRNA-1;Parent=Msa0374460;Name=Msa0374460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=103|1|1|1|1|1|4|109|327 |
| chr3_1 | exon | 73924745 | 73924957 | 73924745 | ID=Msa0374460-mRNA-1:exon:16914;Parent=Msa0374460-mRNA-1 |
| chr3_1 | exon | 73925051 | 73925196 | 73925051 | ID=Msa0374460-mRNA-1:exon:16915;Parent=Msa0374460-mRNA-1 |
| chr3_1 | exon | 73926492 | 73926607 | 73926492 | ID=Msa0374460-mRNA-1:exon:16916;Parent=Msa0374460-mRNA-1 |
| chr3_1 | exon | 73927171 | 73927891 | 73927171 | ID=Msa0374460-mRNA-1:exon:16917;Parent=Msa0374460-mRNA-1 |
| chr3_1 | five_prime_UTR | 73924745 | 73924847 | 73924745 | ID=Msa0374460-mRNA-1:five_prime_utr;Parent=Msa0374460-mRNA-1 |
| chr3_1 | CDS | 73924848 | 73924957 | 73924848 | ID=Msa0374460-mRNA-1:cds;Parent=Msa0374460-mRNA-1 |
| chr3_1 | CDS | 73925051 | 73925196 | 73925051 | ID=Msa0374460-mRNA-1:cds;Parent=Msa0374460-mRNA-1 |
| chr3_1 | CDS | 73926492 | 73926607 | 73926492 | ID=Msa0374460-mRNA-1:cds;Parent=Msa0374460-mRNA-1 |
| chr3_1 | CDS | 73927171 | 73927782 | 73927171 | ID=Msa0374460-mRNA-1:cds;Parent=Msa0374460-mRNA-1 |
| chr3_1 | three_prime_UTR | 73927783 | 73927891 | 73927783 | ID=Msa0374460-mRNA-1:three_prime_utr;Parent=Msa0374460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
