Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470430 | XP_003602063.1 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470430 | sp|Q9XHZ8|Y1178_ARATH | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.39e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470430 | G7J501 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0470430 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374460 | Msa0470430 | 0.979460 | 5.137536e-148 | -8.615850e-47 |
| Msa0374550 | Msa0470430 | 0.986159 | 7.274064e-166 | -8.615850e-47 |
| Msa0374590 | Msa0470430 | 0.984883 | 7.140098e-162 | -8.615850e-47 |
| Msa0422350 | Msa0470430 | 0.889326 | 2.676328e-73 | -8.615850e-47 |
| Msa0470430 | Msa0525390 | 0.947061 | 1.395724e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470430 | MtrunA17_Chr3g0124921 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Msa0470430 | MtrunA17_Chr1g0159831 | 72.727 | 330 | 81 | 5 | 1 | 323 | 1 | 328 | 2.28e-173 | 484 |
| Msa0470430 | MtrunA17_Chr3g0103031 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 9.84e-116 | 337 |
| Msa0470430 | MtrunA17_Chr5g0447111 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 8.75e-97 | 289 |
| Msa0470430 | MtrunA17_Chr5g0447191 | 40.741 | 189 | 106 | 3 | 135 | 321 | 3 | 187 | 3.52e-38 | 134 |
| Msa0470430 | MtrunA17_Chr4g0029841 | 28.283 | 198 | 136 | 3 | 128 | 324 | 89 | 281 | 3.99e-17 | 80.1 |
| Msa0470430 | MtrunA17_Chr3g0125321 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 5.85e-12 | 65.1 |
| Msa0470430 | MtrunA17_Chr7g0259851 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 5.86e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470430 | AT1G21780.2 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0470430 | AT1G21780.1 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0470430 | AT1G55760.1 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 9.27e-111 | 325 |
| Msa0470430 | AT2G39760.2 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.03e-14 | 73.6 |
| Msa0470430 | AT2G39760.4 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0470430 | AT2G39760.3 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0470430 | AT2G39760.1 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.86e-14 | 73.2 |
| Msa0470430 | AT5G13060.1 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.10e-11 | 64.7 |
| Msa0470430 | AT3G56230.1 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.70e-11 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3_3:+72497826 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3_3:-72497952 | Msa0470430:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3_3:+72500500 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3_3:+72497893 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3_3:-72500498 | Msa0470430:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3_3:+72499010 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3_3:-72498137 | Msa0470430:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3_3:-72500667 | Msa0470430:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3_3:+72498196 | None:intergenic |
| ATGCCCTTGGACCATGTAAA+TGG | 0.341441 | 3_3:-72497790 | Msa0470430:three_prime_UTR |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3_3:-72497881 | Msa0470430:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3_3:-72500452 | Msa0470430:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3_3:+72497827 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3_3:-72500759 | Msa0470430:exon |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3_3:-72500422 | Msa0470430:intron |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3_3:+72500494 | None:intergenic |
| GAATAGTTTAGTTAATTGTA+TGG | 0.406977 | 3_3:-72497823 | Msa0470430:exon |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3_3:-72498090 | Msa0470430:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3_3:-72499064 | Msa0470430:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3_3:-72499107 | Msa0470430:CDS |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3_3:+72498260 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3_3:-72498162 | Msa0470430:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3_3:-72499086 | Msa0470430:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3_3:-72498114 | Msa0470430:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3_3:+72498020 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3_3:+72498040 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3_3:+72498352 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3_3:+72497831 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3_3:+72500424 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3_3:+72500467 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3_3:+72498998 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3_3:-72498008 | Msa0470430:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3_3:+72498358 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3_3:-72497979 | Msa0470430:CDS |
| ATCCGCCATGGTTGGAGAGA+TGG | 0.494320 | 3_3:+72500763 | None:intergenic |
| TGGGAAAATTACTATGCCCT+TGG | 0.497075 | 3_3:-72497803 | Msa0470430:three_prime_UTR |
| AATAGTTTAGTTAATTGTAT+GGG | 0.497219 | 3_3:-72497822 | Msa0470430:exon |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3_3:-72500661 | Msa0470430:intron |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3_3:-72500674 | Msa0470430:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.502779 | 3_3:-72500760 | Msa0470430:exon |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3_3:+72498316 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3_3:+72498170 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3_3:-72498013 | Msa0470430:CDS |
| ACATTGATATACCATTTACA+TGG | 0.543059 | 3_3:+72497779 | None:intergenic |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3_3:+72500665 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3_3:-72498087 | Msa0470430:CDS |
| TATACCATTTACATGGTCCA+AGG | 0.562998 | 3_3:+72497786 | None:intergenic |
| TCAACCCTATCCGCCATGGT+TGG | 0.563052 | 3_3:+72500755 | None:intergenic |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3_3:-72498417 | Msa0470430:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3_3:-72499116 | Msa0470430:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3_3:-72499063 | Msa0470430:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3_3:-72498428 | Msa0470430:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3_3:+72498420 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3_3:+72498299 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3_3:+72498311 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3_3:-72498295 | Msa0470430:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3_3:+72498347 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3_3:+72499040 | None:intergenic |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3_3:+72498252 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3_3:+72498346 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3_3:-72498352 | Msa0470430:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3_3:-72498315 | Msa0470430:CDS |
| ACACACCATCTCTCCAACCA+TGG | 0.609094 | 3_3:-72500768 | Msa0470430:exon |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3_3:-72500713 | Msa0470430:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3_3:-72498238 | Msa0470430:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3_3:+72500423 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3_3:+72500470 | None:intergenic |
| ATACCATTTACATGGTCCAA+GGG | 0.630829 | 3_3:+72497787 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3_3:+72500751 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3_3:+72500466 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3_3:+72500471 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3_3:-72500730 | Msa0470430:CDS |
| CACCATCTCTCCAACCATGG+CGG | 0.699379 | 3_3:-72500765 | Msa0470430:exon |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3_3:+72500439 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3_3:-72498067 | Msa0470430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | + | chr3_3:72499993-72500012 | None:intergenic | 10.0% |
| !! | TTTGTATTAATGTGATAAAA+CGG | - | chr3_3:72498253-72498272 | Msa0470430:CDS | 15.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | - | chr3_3:72498291-72498310 | Msa0470430:CDS | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | - | chr3_3:72500631-72500650 | Msa0470430:intron | 15.0% |
| !! | AATAGTTTAGTTAATTGTAT+GGG | - | chr3_3:72500761-72500780 | Msa0470430:exon | 15.0% |
| !!! | CAATTCGTTTTTTTTTTTTC+AGG | - | chr3_3:72498015-72498034 | Msa0470430:CDS | 20.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | + | chr3_3:72499957-72499976 | None:intergenic | 20.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | - | chr3_3:72500002-72500021 | Msa0470430:intron | 20.0% |
| !! | ACAATTAACTAAACTATTCT+GGG | + | chr3_3:72500759-72500778 | None:intergenic | 20.0% |
| !! | TACAATTAACTAAACTATTC+TGG | + | chr3_3:72500760-72500779 | None:intergenic | 20.0% |
| !! | GAATAGTTTAGTTAATTGTA+TGG | - | chr3_3:72500760-72500779 | Msa0470430:exon | 20.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | + | chr3_3:72497897-72497916 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | - | chr3_3:72498039-72498058 | Msa0470430:CDS | 25.0% |
| !! | AACAAAAAACGAAAAAGTGT+TGG | + | chr3_3:72498202-72498221 | None:intergenic | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | + | chr3_3:72498320-72498339 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | - | chr3_3:72498341-72498360 | Msa0470430:CDS | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | - | chr3_3:72498682-72498701 | Msa0470430:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | + | chr3_3:72498797-72498816 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | + | chr3_3:72498798-72498817 | None:intergenic | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | - | chr3_3:72498939-72498958 | Msa0470430:intron | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | - | chr3_3:72498940-72498959 | Msa0470430:intron | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | - | chr3_3:72499000-72499019 | Msa0470430:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | + | chr3_3:72499012-72499031 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | + | chr3_3:72499034-72499053 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | + | chr3_3:72499085-72499104 | None:intergenic | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | - | chr3_3:72499122-72499141 | Msa0470430:intron | 25.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | + | chr3_3:72499206-72499225 | None:intergenic | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | + | chr3_3:72499588-72499607 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | + | chr3_3:72499612-72499631 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | - | chr3_3:72499624-72499643 | Msa0470430:intron | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | + | chr3_3:72499773-72499792 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | - | chr3_3:72499828-72499847 | Msa0470430:intron | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | - | chr3_3:72499829-72499848 | Msa0470430:intron | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | - | chr3_3:72500446-72500465 | Msa0470430:CDS | 25.0% |
| ! | ACATTGATATACCATTTACA+TGG | + | chr3_3:72500807-72500826 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCTTTTCTTGGT+TGG | - | chr3_3:72497760-72497779 | Msa0470430:three_prime_UTR | 30.0% |
| CAATGGAAAATCGAAAACTT+CGG | - | chr3_3:72497870-72497889 | Msa0470430:CDS | 30.0% | |
| ! | TCAGGTACTTTTCAATAGTA+AGG | - | chr3_3:72498033-72498052 | Msa0470430:CDS | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | + | chr3_3:72498086-72498105 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | - | chr3_3:72498085-72498104 | Msa0470430:CDS | 30.0% |
| AAAACGGTAAAGTTTGTGTA+TGG | - | chr3_3:72498269-72498288 | Msa0470430:CDS | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | + | chr3_3:72498500-72498519 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | + | chr3_3:72498681-72498700 | None:intergenic | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | - | chr3_3:72498713-72498732 | Msa0470430:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | + | chr3_3:72499043-72499062 | None:intergenic | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | + | chr3_3:72499137-72499156 | None:intergenic | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | - | chr3_3:72499144-72499163 | Msa0470430:intron | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | + | chr3_3:72499207-72499226 | None:intergenic | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | + | chr3_3:72499320-72499339 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | - | chr3_3:72499334-72499353 | Msa0470430:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | - | chr3_3:72499362-72499381 | Msa0470430:intron | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | - | chr3_3:72499396-72499415 | Msa0470430:intron | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | - | chr3_3:72499432-72499451 | Msa0470430:intron | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | + | chr3_3:72499546-72499565 | None:intergenic | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | + | chr3_3:72499576-72499595 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | - | chr3_3:72499627-72499646 | Msa0470430:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | + | chr3_3:72499693-72499712 | None:intergenic | 30.0% | |
| ! | TGTTTTGCATGCATTATAAC+TGG | - | chr3_3:72499811-72499830 | Msa0470430:intron | 30.0% |
| AAATGAAAGAAAAGGGTTGT+TGG | - | chr3_3:72499836-72499855 | Msa0470430:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | - | chr3_3:72499876-72499895 | Msa0470430:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | - | chr3_3:72499884-72499903 | Msa0470430:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | - | chr3_3:72499885-72499904 | Msa0470430:intron | 30.0% | |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | + | chr3_3:72499949-72499968 | None:intergenic | 30.0% |
| AATTATAGCAATTATTCCGG+AGG | - | chr3_3:72500005-72500024 | Msa0470430:intron | 30.0% | |
| ! | TGATCTATTCTTTTGAACTC+AGG | - | chr3_3:72500132-72500151 | Msa0470430:intron | 30.0% |
| ! | GATCTATTCTTTTGAACTCA+GGG | - | chr3_3:72500133-72500152 | Msa0470430:intron | 30.0% |
| GCAGCTAATAAGTATGATAT+TGG | - | chr3_3:72500493-72500512 | Msa0470430:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | - | chr3_3:72500496-72500515 | Msa0470430:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | - | chr3_3:72500604-72500623 | Msa0470430:intron | 30.0% | |
| TTAACTAAACTATTCTGGGT+TGG | + | chr3_3:72500755-72500774 | None:intergenic | 30.0% | |
| ! | CACGTTTCTCTTTCTTTTCT+TGG | - | chr3_3:72497756-72497775 | Msa0470430:three_prime_UTR | 35.0% |
| AAATCTGATCCTTTCAAGCT+CGG | - | chr3_3:72497909-72497928 | Msa0470430:CDS | 35.0% | |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | + | chr3_3:72498072-72498091 | None:intergenic | 35.0% |
| TGCTCCTTAGAAACTTTAGA+AGG | + | chr3_3:72498092-72498111 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | + | chr3_3:72498162-72498181 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | + | chr3_3:72498163-72498182 | None:intergenic | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | + | chr3_3:72498182-72498201 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | + | chr3_3:72498469-72498488 | None:intergenic | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | - | chr3_3:72498467-72498486 | Msa0470430:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | - | chr3_3:72498530-72498549 | Msa0470430:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | + | chr3_3:72498561-72498580 | None:intergenic | 35.0% |
| GGCTATAGGAAAATAACACA+TGG | - | chr3_3:72498565-72498584 | Msa0470430:intron | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | - | chr3_3:72498624-72498643 | Msa0470430:intron | 35.0% | |
| !! | CTATTGTACTCGGTTTGTTA+GGG | - | chr3_3:72498723-72498742 | Msa0470430:intron | 35.0% |
| TCTCTATCCAATGTCTTAGA+CGG | - | chr3_3:72499228-72499247 | Msa0470430:intron | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | - | chr3_3:72499267-72499286 | Msa0470430:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | + | chr3_3:72499280-72499299 | None:intergenic | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | - | chr3_3:72499281-72499300 | Msa0470430:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | - | chr3_3:72499326-72499345 | Msa0470430:intron | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | + | chr3_3:72499377-72499396 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | + | chr3_3:72499403-72499422 | None:intergenic | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | + | chr3_3:72499453-72499472 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | - | chr3_3:72499467-72499486 | Msa0470430:intron | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | - | chr3_3:72499520-72499539 | Msa0470430:intron | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | + | chr3_3:72499634-72499653 | None:intergenic | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | - | chr3_3:72499715-72499734 | Msa0470430:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | - | chr3_3:72499763-72499782 | Msa0470430:intron | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | - | chr3_3:72499782-72499801 | Msa0470430:intron | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | + | chr3_3:72499939-72499958 | None:intergenic | 35.0% | |
| AAAATATGATACCAGTGCAG+AGG | + | chr3_3:72500098-72500117 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | + | chr3_3:72500166-72500185 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | - | chr3_3:72500166-72500185 | Msa0470430:intron | 35.0% | |
| !! | TGAAACATGCTTTGAAACAC+AGG | + | chr3_3:72500334-72500353 | None:intergenic | 35.0% |
| CAAGTGACATGTCTTCAATA+TGG | + | chr3_3:72500390-72500409 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | - | chr3_3:72500516-72500535 | Msa0470430:CDS | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | + | chr3_3:72500546-72500565 | None:intergenic | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | + | chr3_3:72500566-72500585 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | - | chr3_3:72500570-72500589 | Msa0470430:intron | 35.0% | |
| ATACCATTTACATGGTCCAA+GGG | + | chr3_3:72500799-72500818 | None:intergenic | 35.0% | |
| TATACCATTTACATGGTCCA+AGG | + | chr3_3:72500800-72500819 | None:intergenic | 35.0% | |
| ! | TTTTCTTGGTTGGACGAGAA+TGG | - | chr3_3:72497770-72497789 | Msa0470430:three_prime_UTR | 40.0% |
| CTGTTGCAAGATTAGCACAA+TGG | - | chr3_3:72497853-72497872 | Msa0470430:CDS | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | + | chr3_3:72498120-72498139 | None:intergenic | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | - | chr3_3:72498161-72498180 | Msa0470430:CDS | 40.0% |
| ACAATACTCGGTAGCATTTG+TGG | + | chr3_3:72498457-72498476 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | - | chr3_3:72498588-72498607 | Msa0470430:intron | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | - | chr3_3:72498589-72498608 | Msa0470430:intron | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | + | chr3_3:72498642-72498661 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | - | chr3_3:72498641-72498660 | Msa0470430:intron | 40.0% | |
| ! | GCTATTGTACTCGGTTTGTT+AGG | - | chr3_3:72498722-72498741 | Msa0470430:intron | 40.0% |
| GGATCGACTATAGTGATCTT+AGG | - | chr3_3:72499249-72499268 | Msa0470430:intron | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | + | chr3_3:72499311-72499330 | None:intergenic | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | + | chr3_3:72499312-72499331 | None:intergenic | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | - | chr3_3:72499371-72499390 | Msa0470430:intron | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | - | chr3_3:72499476-72499495 | Msa0470430:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | - | chr3_3:72499519-72499538 | Msa0470430:intron | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | + | chr3_3:72499729-72499748 | None:intergenic | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | + | chr3_3:72499938-72499957 | None:intergenic | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | + | chr3_3:72500024-72500043 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | + | chr3_3:72500073-72500092 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | + | chr3_3:72500074-72500093 | None:intergenic | 40.0% | |
| ! | CTATTCTTTTGAACTCAGGG+TGG | - | chr3_3:72500136-72500155 | Msa0470430:intron | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | - | chr3_3:72500155-72500174 | Msa0470430:intron | 40.0% |
| CATGTTTCATCACAACCTGA+AGG | - | chr3_3:72500345-72500364 | Msa0470430:intron | 40.0% | |
| ! | TTGACGACTCTTTTTCCTTC+AGG | + | chr3_3:72500363-72500382 | None:intergenic | 40.0% |
| GCTCTTCGAAGTTACTTGTA+TGG | - | chr3_3:72500421-72500440 | Msa0470430:intron | 40.0% | |
| AAACACTGTCTTGCATTGCT+TGG | - | chr3_3:72500469-72500488 | Msa0470430:CDS | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | - | chr3_3:72500575-72500594 | Msa0470430:intron | 40.0% | |
| TGGGAAAATTACTATGCCCT+TGG | - | chr3_3:72500780-72500799 | Msa0470430:five_prime_UTR | 40.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | - | chr3_3:72497916-72497935 | Msa0470430:CDS | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | + | chr3_3:72497921-72497940 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | + | chr3_3:72498119-72498138 | None:intergenic | 45.0% | |
| AGCATTTGTGGTGGTTCGTA+GGG | + | chr3_3:72498445-72498464 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | + | chr3_3:72498446-72498465 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | + | chr3_3:72498454-72498473 | None:intergenic | 45.0% | |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | - | chr3_3:72498521-72498540 | Msa0470430:intron | 45.0% |
| TCCATATGGATCAGCCATGT+GGG | - | chr3_3:72498544-72498563 | Msa0470430:intron | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | + | chr3_3:72498602-72498621 | None:intergenic | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | - | chr3_3:72498755-72498774 | Msa0470430:intron | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | + | chr3_3:72498763-72498782 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | + | chr3_3:72498764-72498783 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | + | chr3_3:72498784-72498803 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | + | chr3_3:72498785-72498804 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | + | chr3_3:72499238-72499257 | None:intergenic | 45.0% |
| CAATGATCAAGGAAGACAGG+GGG | + | chr3_3:72499309-72499328 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | + | chr3_3:72499310-72499329 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | - | chr3_3:72499497-72499516 | Msa0470430:intron | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | + | chr3_3:72499670-72499689 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | + | chr3_3:72500287-72500306 | None:intergenic | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | - | chr3_3:72500288-72500307 | Msa0470430:intron | 45.0% | |
| !! | GCTTTGAAACACAGGAGAAC+TGG | + | chr3_3:72500326-72500345 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | - | chr3_3:72500689-72500708 | Msa0470430:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | - | chr3_3:72500690-72500709 | Msa0470430:CDS | 45.0% |
| ATGCCCTTGGACCATGTAAA+TGG | - | chr3_3:72500793-72500812 | Msa0470430:five_prime_UTR | 45.0% | |
| ACACACCATCTCTCCAACCA+TGG | - | chr3_3:72497815-72497834 | Msa0470430:three_prime_UTR | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | - | chr3_3:72497922-72497941 | Msa0470430:CDS | 50.0% |
| GAATGAAACGAGCAACGGGT+GGG | + | chr3_3:72498115-72498134 | None:intergenic | 50.0% | |
| AGAATGAAACGAGCAACGGG+TGG | + | chr3_3:72498116-72498135 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | + | chr3_3:72498442-72498461 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | - | chr3_3:72498543-72498562 | Msa0470430:intron | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | + | chr3_3:72498756-72498775 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | - | chr3_3:72498754-72498773 | Msa0470430:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | - | chr3_3:72498767-72498786 | Msa0470430:intron | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | + | chr3_3:72499671-72499690 | None:intergenic | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | + | chr3_3:72500239-72500258 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | + | chr3_3:72500240-72500259 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | + | chr3_3:72500270-72500289 | None:intergenic | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | - | chr3_3:72500268-72500287 | Msa0470430:intron | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | + | chr3_3:72500275-72500294 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | + | chr3_3:72500416-72500435 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | + | chr3_3:72500693-72500712 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | - | chr3_3:72500702-72500721 | Msa0470430:CDS | 50.0% | |
| CACCATCTCTCCAACCATGG+CGG | - | chr3_3:72497818-72497837 | Msa0470430:three_prime_UTR | 55.0% | |
| ATCCGCCATGGTTGGAGAGA+TGG | + | chr3_3:72497823-72497842 | None:intergenic | 55.0% | |
| !! | TCTCTCCAACCATGGCGGAT+AGG | - | chr3_3:72497823-72497842 | Msa0470430:exon | 55.0% |
| !! | CTCTCCAACCATGGCGGATA+GGG | - | chr3_3:72497824-72497843 | Msa0470430:exon | 55.0% |
| TCAACCCTATCCGCCATGGT+TGG | + | chr3_3:72497831-72497850 | None:intergenic | 55.0% | |
| AGTGTCAACCCTATCCGCCA+TGG | + | chr3_3:72497835-72497854 | None:intergenic | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | - | chr3_3:72498131-72498150 | Msa0470430:CDS | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | + | chr3_3:72498548-72498567 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | - | chr3_3:72498551-72498570 | Msa0470430:intron | 55.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | - | chr3_3:72498650-72498669 | Msa0470430:intron | 55.0% | |
| CTGACACTGAACCTCTGCAC+TGG | - | chr3_3:72500084-72500103 | Msa0470430:intron | 55.0% | |
| CTTGCGGGAAGAACCAGCGA+CGG | + | chr3_3:72498147-72498166 | None:intergenic | 60.0% | |
| CGGACATACCGCTTGCTCCT+AGG | + | chr3_3:72498661-72498680 | None:intergenic | 60.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | + | chr3_3:72498433-72498452 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | + | chr3_3:72499302-72499321 | None:intergenic | 65.0% |
| CGAGCATGCGGGAGAGGCAA+TGG | + | chr3_3:72500228-72500247 | None:intergenic | 65.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | + | chr3_3:72500234-72500253 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | - | chr3_3:72500231-72500250 | Msa0470430:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 72497731 | 72500874 | 72497731 | ID=Msa0470430;Name=Msa0470430 |
| chr3_3 | mRNA | 72497731 | 72500874 | 72497731 | ID=Msa0470430-mRNA-1;Parent=Msa0470430;Name=Msa0470430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=103|1|1|1|1|1|4|109|327 |
| chr3_3 | exon | 72497731 | 72498451 | 72497731 | ID=Msa0470430-mRNA-1:exon:18152;Parent=Msa0470430-mRNA-1 |
| chr3_3 | exon | 72499011 | 72499126 | 72499011 | ID=Msa0470430-mRNA-1:exon:18151;Parent=Msa0470430-mRNA-1 |
| chr3_3 | exon | 72500423 | 72500568 | 72500423 | ID=Msa0470430-mRNA-1:exon:18150;Parent=Msa0470430-mRNA-1 |
| chr3_3 | exon | 72500662 | 72500874 | 72500662 | ID=Msa0470430-mRNA-1:exon:18149;Parent=Msa0470430-mRNA-1 |
| chr3_3 | five_prime_UTR | 72500772 | 72500874 | 72500772 | ID=Msa0470430-mRNA-1:five_prime_utr;Parent=Msa0470430-mRNA-1 |
| chr3_3 | CDS | 72500662 | 72500771 | 72500662 | ID=Msa0470430-mRNA-1:cds;Parent=Msa0470430-mRNA-1 |
| chr3_3 | CDS | 72500423 | 72500568 | 72500423 | ID=Msa0470430-mRNA-1:cds;Parent=Msa0470430-mRNA-1 |
| chr3_3 | CDS | 72499011 | 72499126 | 72499011 | ID=Msa0470430-mRNA-1:cds;Parent=Msa0470430-mRNA-1 |
| chr3_3 | CDS | 72497840 | 72498451 | 72497840 | ID=Msa0470430-mRNA-1:cds;Parent=Msa0470430-mRNA-1 |
| chr3_3 | three_prime_UTR | 72497731 | 72497839 | 72497731 | ID=Msa0470430-mRNA-1:three_prime_utr;Parent=Msa0470430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
