Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525390 | XP_003602063.1 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525390 | sp|Q9XHZ8|Y1178_ARATH | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.39e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525390 | G7J501 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0525390 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374460 | Msa0525390 | 0.951384 | 2.289927e-109 | -8.615850e-47 |
| Msa0374550 | Msa0525390 | 0.945901 | 1.278027e-104 | -8.615850e-47 |
| Msa0374590 | Msa0525390 | 0.955176 | 5.536494e-113 | -8.615850e-47 |
| Msa0422350 | Msa0525390 | 0.930775 | 1.001053e-93 | -8.615850e-47 |
| Msa0470430 | Msa0525390 | 0.947061 | 1.395724e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525390 | MtrunA17_Chr3g0124921 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Msa0525390 | MtrunA17_Chr1g0159831 | 72.727 | 330 | 81 | 5 | 1 | 323 | 1 | 328 | 2.28e-173 | 484 |
| Msa0525390 | MtrunA17_Chr3g0103031 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 9.84e-116 | 337 |
| Msa0525390 | MtrunA17_Chr5g0447111 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 8.75e-97 | 289 |
| Msa0525390 | MtrunA17_Chr5g0447191 | 40.741 | 189 | 106 | 3 | 135 | 321 | 3 | 187 | 3.52e-38 | 134 |
| Msa0525390 | MtrunA17_Chr4g0029841 | 28.283 | 198 | 136 | 3 | 128 | 324 | 89 | 281 | 3.99e-17 | 80.1 |
| Msa0525390 | MtrunA17_Chr3g0125321 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 5.85e-12 | 65.1 |
| Msa0525390 | MtrunA17_Chr7g0259851 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 5.86e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525390 | AT1G21780.2 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0525390 | AT1G21780.1 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0525390 | AT1G55760.1 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 9.27e-111 | 325 |
| Msa0525390 | AT2G39760.2 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.03e-14 | 73.6 |
| Msa0525390 | AT2G39760.4 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0525390 | AT2G39760.3 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0525390 | AT2G39760.1 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.86e-14 | 73.2 |
| Msa0525390 | AT5G13060.1 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.10e-11 | 64.7 |
| Msa0525390 | AT3G56230.1 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.70e-11 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3_4:-78919270 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3_4:+78919144 | Msa0525390:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3_4:-78916596 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3_4:-78919203 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3_4:+78916598 | Msa0525390:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3_4:-78918086 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3_4:+78918959 | Msa0525390:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3_4:+78916429 | Msa0525390:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3_4:-78918900 | None:intergenic |
| ATGCCCTTGGACCATGTAAA+TGG | 0.341441 | 3_4:+78919306 | Msa0525390:three_prime_UTR |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3_4:+78919215 | Msa0525390:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3_4:+78916644 | Msa0525390:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3_4:-78919269 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3_4:+78916337 | Msa0525390:exon |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3_4:+78916674 | Msa0525390:CDS |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3_4:-78916602 | None:intergenic |
| GAATAGTTTAGTTAATTGTA+TGG | 0.406977 | 3_4:+78919273 | Msa0525390:exon |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3_4:+78919006 | Msa0525390:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3_4:+78918032 | Msa0525390:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3_4:+78917989 | Msa0525390:intron |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3_4:-78918836 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3_4:+78918934 | Msa0525390:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3_4:+78918010 | Msa0525390:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3_4:+78918982 | Msa0525390:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3_4:-78919076 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3_4:-78919056 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3_4:-78918744 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3_4:-78919265 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3_4:-78916672 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3_4:-78916629 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3_4:-78918098 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3_4:+78919088 | Msa0525390:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3_4:-78918738 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3_4:+78919117 | Msa0525390:CDS |
| ATCCGCCATGGTTGGAGAGA+TGG | 0.488556 | 3_4:-78916333 | None:intergenic |
| TGGGAAAATTACTATGCCCT+TGG | 0.497075 | 3_4:+78919293 | Msa0525390:three_prime_UTR |
| AATAGTTTAGTTAATTGTAT+GGG | 0.497219 | 3_4:+78919274 | Msa0525390:exon |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3_4:+78916435 | Msa0525390:CDS |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3_4:+78916422 | Msa0525390:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3_4:+78916336 | Msa0525390:exon |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3_4:-78918780 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3_4:-78918926 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3_4:+78919083 | Msa0525390:CDS |
| ACATTGATATACCATTTACA+TGG | 0.543059 | 3_4:-78919317 | None:intergenic |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3_4:-78916431 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3_4:+78919009 | Msa0525390:CDS |
| TATACCATTTACATGGTCCA+AGG | 0.562998 | 3_4:-78919310 | None:intergenic |
| TCAACCCTATCCGCCATGGT+TGG | 0.563052 | 3_4:-78916341 | None:intergenic |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3_4:+78918679 | Msa0525390:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3_4:+78917980 | Msa0525390:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3_4:+78918033 | Msa0525390:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3_4:+78918668 | Msa0525390:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3_4:-78918676 | None:intergenic |
| ACACTCCATCTCTCCAACCA+TGG | 0.581067 | 3_4:+78916328 | Msa0525390:exon |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3_4:-78918797 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3_4:-78918785 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3_4:+78918801 | Msa0525390:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3_4:-78918749 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3_4:-78918056 | None:intergenic |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3_4:-78918844 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3_4:-78918750 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3_4:+78918744 | Msa0525390:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3_4:+78918781 | Msa0525390:CDS |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3_4:+78916383 | Msa0525390:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3_4:+78918858 | Msa0525390:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3_4:-78916673 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3_4:-78916626 | None:intergenic |
| ATACCATTTACATGGTCCAA+GGG | 0.630829 | 3_4:-78919309 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3_4:-78916345 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3_4:-78916630 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3_4:-78916625 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3_4:+78916366 | Msa0525390:CDS |
| CTCCATCTCTCCAACCATGG+CGG | 0.697206 | 3_4:+78916331 | Msa0525390:exon |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3_4:-78916657 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3_4:+78919029 | Msa0525390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | - | chr3_4:78918506-78918525 | None:intergenic | 10.0% |
| !! | TTTGTATTAATGTGATAAAA+CGG | + | chr3_4:78916766-78916785 | Msa0525390:intron | 15.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | + | chr3_4:78916804-78916823 | Msa0525390:intron | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | + | chr3_4:78919144-78919163 | Msa0525390:CDS | 15.0% |
| !! | AATAGTTTAGTTAATTGTAT+GGG | + | chr3_4:78919274-78919293 | Msa0525390:exon | 15.0% |
| !!! | CAATTCGTTTTTTTTTTTTC+AGG | + | chr3_4:78916528-78916547 | Msa0525390:intron | 20.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | - | chr3_4:78918470-78918489 | None:intergenic | 20.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | + | chr3_4:78918515-78918534 | Msa0525390:intron | 20.0% |
| !! | ACAATTAACTAAACTATTCT+GGG | - | chr3_4:78919272-78919291 | None:intergenic | 20.0% |
| !! | TACAATTAACTAAACTATTC+TGG | - | chr3_4:78919273-78919292 | None:intergenic | 20.0% |
| !! | GAATAGTTTAGTTAATTGTA+TGG | + | chr3_4:78919273-78919292 | Msa0525390:exon | 20.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | - | chr3_4:78916410-78916429 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | + | chr3_4:78916552-78916571 | Msa0525390:CDS | 25.0% |
| !! | AACAAAAAACGAAAAAGTGT+TGG | - | chr3_4:78916715-78916734 | None:intergenic | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | - | chr3_4:78916833-78916852 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | + | chr3_4:78916854-78916873 | Msa0525390:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | + | chr3_4:78917195-78917214 | Msa0525390:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | - | chr3_4:78917310-78917329 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | - | chr3_4:78917311-78917330 | None:intergenic | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | + | chr3_4:78917452-78917471 | Msa0525390:intron | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | + | chr3_4:78917453-78917472 | Msa0525390:intron | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | + | chr3_4:78917513-78917532 | Msa0525390:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | - | chr3_4:78917525-78917544 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | - | chr3_4:78917547-78917566 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | - | chr3_4:78917598-78917617 | None:intergenic | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | + | chr3_4:78917635-78917654 | Msa0525390:intron | 25.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | - | chr3_4:78917719-78917738 | None:intergenic | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | - | chr3_4:78918101-78918120 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | - | chr3_4:78918125-78918144 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | + | chr3_4:78918137-78918156 | Msa0525390:intron | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | - | chr3_4:78918286-78918305 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | + | chr3_4:78918341-78918360 | Msa0525390:intron | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | + | chr3_4:78918342-78918361 | Msa0525390:intron | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | + | chr3_4:78918959-78918978 | Msa0525390:CDS | 25.0% |
| ! | ACATTGATATACCATTTACA+TGG | - | chr3_4:78919320-78919339 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCTTTTCTTGGT+TGG | + | chr3_4:78916266-78916285 | Msa0525390:five_prime_UTR | 30.0% |
| CAATGGAAAATCGAAAACTT+CGG | + | chr3_4:78916383-78916402 | Msa0525390:CDS | 30.0% | |
| ! | TCAGGTACTTTTCAATAGTA+AGG | + | chr3_4:78916546-78916565 | Msa0525390:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | - | chr3_4:78916599-78916618 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | + | chr3_4:78916598-78916617 | Msa0525390:CDS | 30.0% |
| AAAACGGTAAAGTTTGTGTA+TGG | + | chr3_4:78916782-78916801 | Msa0525390:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | - | chr3_4:78917013-78917032 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | - | chr3_4:78917194-78917213 | None:intergenic | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | + | chr3_4:78917226-78917245 | Msa0525390:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | - | chr3_4:78917556-78917575 | None:intergenic | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | - | chr3_4:78917650-78917669 | None:intergenic | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | + | chr3_4:78917657-78917676 | Msa0525390:intron | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | - | chr3_4:78917720-78917739 | None:intergenic | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | - | chr3_4:78917833-78917852 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | + | chr3_4:78917847-78917866 | Msa0525390:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | + | chr3_4:78917875-78917894 | Msa0525390:intron | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | + | chr3_4:78917909-78917928 | Msa0525390:intron | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | + | chr3_4:78917945-78917964 | Msa0525390:intron | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | - | chr3_4:78918059-78918078 | None:intergenic | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | - | chr3_4:78918089-78918108 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | + | chr3_4:78918140-78918159 | Msa0525390:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | - | chr3_4:78918206-78918225 | None:intergenic | 30.0% | |
| ! | TGTTTTGCATGCATTATAAC+TGG | + | chr3_4:78918324-78918343 | Msa0525390:intron | 30.0% |
| AAATGAAAGAAAAGGGTTGT+TGG | + | chr3_4:78918349-78918368 | Msa0525390:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | + | chr3_4:78918389-78918408 | Msa0525390:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | + | chr3_4:78918397-78918416 | Msa0525390:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | + | chr3_4:78918398-78918417 | Msa0525390:intron | 30.0% | |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | - | chr3_4:78918462-78918481 | None:intergenic | 30.0% |
| AATTATAGCAATTATTCCGG+AGG | + | chr3_4:78918518-78918537 | Msa0525390:intron | 30.0% | |
| ! | TGATCTATTCTTTTGAACTC+AGG | + | chr3_4:78918645-78918664 | Msa0525390:intron | 30.0% |
| ! | GATCTATTCTTTTGAACTCA+GGG | + | chr3_4:78918646-78918665 | Msa0525390:intron | 30.0% |
| GCAGCTAATAAGTATGATAT+TGG | + | chr3_4:78919006-78919025 | Msa0525390:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | + | chr3_4:78919009-78919028 | Msa0525390:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | + | chr3_4:78919117-78919136 | Msa0525390:CDS | 30.0% | |
| TTAACTAAACTATTCTGGGT+TGG | - | chr3_4:78919268-78919287 | None:intergenic | 30.0% | |
| ! | CACGTTTCTCTTTCTTTTCT+TGG | + | chr3_4:78916262-78916281 | Msa0525390:five_prime_UTR | 35.0% |
| AAATCTGATCCTTTCAAGCT+CGG | + | chr3_4:78916422-78916441 | Msa0525390:CDS | 35.0% | |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | - | chr3_4:78916585-78916604 | None:intergenic | 35.0% |
| TGCTCCTTAGAAACTTTAGA+AGG | - | chr3_4:78916605-78916624 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | - | chr3_4:78916675-78916694 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | - | chr3_4:78916676-78916695 | None:intergenic | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | - | chr3_4:78916695-78916714 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | - | chr3_4:78916982-78917001 | None:intergenic | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | + | chr3_4:78916980-78916999 | Msa0525390:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | + | chr3_4:78917043-78917062 | Msa0525390:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | - | chr3_4:78917074-78917093 | None:intergenic | 35.0% |
| GGCTATAGGAAAATAACACA+TGG | + | chr3_4:78917078-78917097 | Msa0525390:intron | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | + | chr3_4:78917137-78917156 | Msa0525390:intron | 35.0% | |
| !! | CTATTGTACTCGGTTTGTTA+GGG | + | chr3_4:78917236-78917255 | Msa0525390:intron | 35.0% |
| TCTCTATCCAATGTCTTAGA+CGG | + | chr3_4:78917741-78917760 | Msa0525390:intron | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | + | chr3_4:78917780-78917799 | Msa0525390:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | - | chr3_4:78917793-78917812 | None:intergenic | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | + | chr3_4:78917794-78917813 | Msa0525390:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | + | chr3_4:78917839-78917858 | Msa0525390:intron | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | - | chr3_4:78917890-78917909 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | - | chr3_4:78917916-78917935 | None:intergenic | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | - | chr3_4:78917966-78917985 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | + | chr3_4:78917980-78917999 | Msa0525390:intron | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | + | chr3_4:78918033-78918052 | Msa0525390:CDS | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | - | chr3_4:78918147-78918166 | None:intergenic | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | + | chr3_4:78918228-78918247 | Msa0525390:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | + | chr3_4:78918276-78918295 | Msa0525390:intron | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | + | chr3_4:78918295-78918314 | Msa0525390:intron | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | - | chr3_4:78918452-78918471 | None:intergenic | 35.0% | |
| AAAATATGATACCAGTGCAG+AGG | - | chr3_4:78918611-78918630 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | - | chr3_4:78918679-78918698 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | + | chr3_4:78918679-78918698 | Msa0525390:CDS | 35.0% | |
| !! | TGAAACATGCTTTGAAACAC+AGG | - | chr3_4:78918847-78918866 | None:intergenic | 35.0% |
| CAAGTGACATGTCTTCAATA+TGG | - | chr3_4:78918903-78918922 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | + | chr3_4:78919029-78919048 | Msa0525390:CDS | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | - | chr3_4:78919059-78919078 | None:intergenic | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | - | chr3_4:78919079-78919098 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | + | chr3_4:78919083-78919102 | Msa0525390:CDS | 35.0% | |
| ATACCATTTACATGGTCCAA+GGG | - | chr3_4:78919312-78919331 | None:intergenic | 35.0% | |
| TATACCATTTACATGGTCCA+AGG | - | chr3_4:78919313-78919332 | None:intergenic | 35.0% | |
| ! | TTTTCTTGGTTGGACGAGAA+TGG | + | chr3_4:78916276-78916295 | Msa0525390:five_prime_UTR | 40.0% |
| CTGTTGCAAGATTAGCACAA+TGG | + | chr3_4:78916366-78916385 | Msa0525390:CDS | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | - | chr3_4:78916633-78916652 | None:intergenic | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | + | chr3_4:78916674-78916693 | Msa0525390:CDS | 40.0% |
| ACAATACTCGGTAGCATTTG+TGG | - | chr3_4:78916970-78916989 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | + | chr3_4:78917101-78917120 | Msa0525390:intron | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | + | chr3_4:78917102-78917121 | Msa0525390:intron | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | - | chr3_4:78917155-78917174 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | + | chr3_4:78917154-78917173 | Msa0525390:intron | 40.0% | |
| ! | GCTATTGTACTCGGTTTGTT+AGG | + | chr3_4:78917235-78917254 | Msa0525390:intron | 40.0% |
| GGATCGACTATAGTGATCTT+AGG | + | chr3_4:78917762-78917781 | Msa0525390:intron | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | - | chr3_4:78917824-78917843 | None:intergenic | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | - | chr3_4:78917825-78917844 | None:intergenic | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | + | chr3_4:78917884-78917903 | Msa0525390:intron | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | + | chr3_4:78917989-78918008 | Msa0525390:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | + | chr3_4:78918032-78918051 | Msa0525390:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | - | chr3_4:78918242-78918261 | None:intergenic | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | - | chr3_4:78918451-78918470 | None:intergenic | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | - | chr3_4:78918537-78918556 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | - | chr3_4:78918586-78918605 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | - | chr3_4:78918587-78918606 | None:intergenic | 40.0% | |
| ! | CTATTCTTTTGAACTCAGGG+TGG | + | chr3_4:78918649-78918668 | Msa0525390:intron | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | + | chr3_4:78918668-78918687 | Msa0525390:CDS | 40.0% |
| CATGTTTCATCACAACCTGA+AGG | + | chr3_4:78918858-78918877 | Msa0525390:CDS | 40.0% | |
| ! | TTGACGACTCTTTTTCCTTC+AGG | - | chr3_4:78918876-78918895 | None:intergenic | 40.0% |
| GCTCTTCGAAGTTACTTGTA+TGG | + | chr3_4:78918934-78918953 | Msa0525390:CDS | 40.0% | |
| AAACACTGTCTTGCATTGCT+TGG | + | chr3_4:78918982-78919001 | Msa0525390:CDS | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | + | chr3_4:78919088-78919107 | Msa0525390:CDS | 40.0% | |
| TGGGAAAATTACTATGCCCT+TGG | + | chr3_4:78919293-78919312 | Msa0525390:three_prime_UTR | 40.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | + | chr3_4:78916429-78916448 | Msa0525390:CDS | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | - | chr3_4:78916434-78916453 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | - | chr3_4:78916632-78916651 | None:intergenic | 45.0% | |
| AGCATTTGTGGTGGTTCGTA+GGG | - | chr3_4:78916958-78916977 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | - | chr3_4:78916959-78916978 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | - | chr3_4:78916967-78916986 | None:intergenic | 45.0% | |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | + | chr3_4:78917034-78917053 | Msa0525390:intron | 45.0% |
| TCCATATGGATCAGCCATGT+GGG | + | chr3_4:78917057-78917076 | Msa0525390:intron | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | - | chr3_4:78917115-78917134 | None:intergenic | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | + | chr3_4:78917268-78917287 | Msa0525390:intron | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | - | chr3_4:78917276-78917295 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | - | chr3_4:78917277-78917296 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | - | chr3_4:78917297-78917316 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | - | chr3_4:78917298-78917317 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | - | chr3_4:78917751-78917770 | None:intergenic | 45.0% |
| CAATGATCAAGGAAGACAGG+GGG | - | chr3_4:78917822-78917841 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | - | chr3_4:78917823-78917842 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | + | chr3_4:78918010-78918029 | Msa0525390:CDS | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | - | chr3_4:78918183-78918202 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | - | chr3_4:78918800-78918819 | None:intergenic | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | + | chr3_4:78918801-78918820 | Msa0525390:CDS | 45.0% | |
| !! | GCTTTGAAACACAGGAGAAC+TGG | - | chr3_4:78918839-78918858 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | + | chr3_4:78919202-78919221 | Msa0525390:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | + | chr3_4:78919203-78919222 | Msa0525390:CDS | 45.0% |
| ATGCCCTTGGACCATGTAAA+TGG | + | chr3_4:78919306-78919325 | Msa0525390:three_prime_UTR | 45.0% | |
| ACACTCCATCTCTCCAACCA+TGG | + | chr3_4:78916328-78916347 | Msa0525390:exon | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | + | chr3_4:78916435-78916454 | Msa0525390:CDS | 50.0% |
| GAATGAAACGAGCAACGGGT+GGG | - | chr3_4:78916628-78916647 | None:intergenic | 50.0% | |
| AGAATGAAACGAGCAACGGG+TGG | - | chr3_4:78916629-78916648 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | - | chr3_4:78916955-78916974 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | + | chr3_4:78917056-78917075 | Msa0525390:intron | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | - | chr3_4:78917269-78917288 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | + | chr3_4:78917267-78917286 | Msa0525390:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | + | chr3_4:78917280-78917299 | Msa0525390:intron | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | - | chr3_4:78918184-78918203 | None:intergenic | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | - | chr3_4:78918752-78918771 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | - | chr3_4:78918753-78918772 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | - | chr3_4:78918783-78918802 | None:intergenic | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | + | chr3_4:78918781-78918800 | Msa0525390:CDS | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | - | chr3_4:78918788-78918807 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | - | chr3_4:78918929-78918948 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | - | chr3_4:78919206-78919225 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | + | chr3_4:78919215-78919234 | Msa0525390:CDS | 50.0% | |
| CTCCATCTCTCCAACCATGG+CGG | + | chr3_4:78916331-78916350 | Msa0525390:exon | 55.0% | |
| ATCCGCCATGGTTGGAGAGA+TGG | - | chr3_4:78916336-78916355 | None:intergenic | 55.0% | |
| !! | TCTCTCCAACCATGGCGGAT+AGG | + | chr3_4:78916336-78916355 | Msa0525390:exon | 55.0% |
| !! | CTCTCCAACCATGGCGGATA+GGG | + | chr3_4:78916337-78916356 | Msa0525390:exon | 55.0% |
| TCAACCCTATCCGCCATGGT+TGG | - | chr3_4:78916344-78916363 | None:intergenic | 55.0% | |
| AGTGTCAACCCTATCCGCCA+TGG | - | chr3_4:78916348-78916367 | None:intergenic | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | + | chr3_4:78916644-78916663 | Msa0525390:CDS | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | - | chr3_4:78917061-78917080 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | + | chr3_4:78917064-78917083 | Msa0525390:intron | 55.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | + | chr3_4:78917163-78917182 | Msa0525390:intron | 55.0% | |
| CTGACACTGAACCTCTGCAC+TGG | + | chr3_4:78918597-78918616 | Msa0525390:intron | 55.0% | |
| CTTGCGGGAAGAACCAGCGA+CGG | - | chr3_4:78916660-78916679 | None:intergenic | 60.0% | |
| CGGACATACCGCTTGCTCCT+AGG | - | chr3_4:78917174-78917193 | None:intergenic | 60.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | - | chr3_4:78916946-78916965 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | - | chr3_4:78917815-78917834 | None:intergenic | 65.0% |
| CGAGCATGCGGGAGAGGCAA+TGG | - | chr3_4:78918741-78918760 | None:intergenic | 65.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | - | chr3_4:78918747-78918766 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | + | chr3_4:78918744-78918763 | Msa0525390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78916237 | 78919387 | 78916237 | ID=Msa0525390;Name=Msa0525390 |
| chr3_4 | mRNA | 78916237 | 78919387 | 78916237 | ID=Msa0525390-mRNA-1;Parent=Msa0525390;Name=Msa0525390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=110|1|1|1|1|1|4|109|327 |
| chr3_4 | exon | 78916237 | 78916456 | 78916237 | ID=Msa0525390-mRNA-1:exon:23530;Parent=Msa0525390-mRNA-1 |
| chr3_4 | exon | 78916550 | 78916695 | 78916550 | ID=Msa0525390-mRNA-1:exon:23531;Parent=Msa0525390-mRNA-1 |
| chr3_4 | exon | 78917992 | 78918107 | 78917992 | ID=Msa0525390-mRNA-1:exon:23532;Parent=Msa0525390-mRNA-1 |
| chr3_4 | exon | 78918667 | 78919387 | 78918667 | ID=Msa0525390-mRNA-1:exon:23533;Parent=Msa0525390-mRNA-1 |
| chr3_4 | five_prime_UTR | 78916237 | 78916346 | 78916237 | ID=Msa0525390-mRNA-1:five_prime_utr;Parent=Msa0525390-mRNA-1 |
| chr3_4 | CDS | 78916347 | 78916456 | 78916347 | ID=Msa0525390-mRNA-1:cds;Parent=Msa0525390-mRNA-1 |
| chr3_4 | CDS | 78916550 | 78916695 | 78916550 | ID=Msa0525390-mRNA-1:cds;Parent=Msa0525390-mRNA-1 |
| chr3_4 | CDS | 78917992 | 78918107 | 78917992 | ID=Msa0525390-mRNA-1:cds;Parent=Msa0525390-mRNA-1 |
| chr3_4 | CDS | 78918667 | 78919278 | 78918667 | ID=Msa0525390-mRNA-1:cds;Parent=Msa0525390-mRNA-1 |
| chr3_4 | three_prime_UTR | 78919279 | 78919387 | 78919279 | ID=Msa0525390-mRNA-1:three_prime_utr;Parent=Msa0525390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
