Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374590 | XP_003602063.1 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374590 | sp|Q9XHZ8|Y1178_ARATH | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.39e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374590 | G7J501 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0374590 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374460 | Msa0374590 | 0.993055 | 3.682166e-197 | -8.615850e-47 |
| Msa0374550 | Msa0374590 | 0.997205 | 1.417970e-238 | -8.615850e-47 |
| Msa0374590 | Msa0422350 | 0.911529 | 5.482757e-83 | -8.615850e-47 |
| Msa0374590 | Msa0470430 | 0.984883 | 7.140098e-162 | -8.615850e-47 |
| Msa0374590 | Msa0525390 | 0.955176 | 5.536494e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374590 | MtrunA17_Chr3g0124921 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Msa0374590 | MtrunA17_Chr1g0159831 | 72.727 | 330 | 81 | 5 | 1 | 323 | 1 | 328 | 2.28e-173 | 484 |
| Msa0374590 | MtrunA17_Chr3g0103031 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 9.84e-116 | 337 |
| Msa0374590 | MtrunA17_Chr5g0447111 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 8.75e-97 | 289 |
| Msa0374590 | MtrunA17_Chr5g0447191 | 40.741 | 189 | 106 | 3 | 135 | 321 | 3 | 187 | 3.52e-38 | 134 |
| Msa0374590 | MtrunA17_Chr4g0029841 | 28.283 | 198 | 136 | 3 | 128 | 324 | 89 | 281 | 3.99e-17 | 80.1 |
| Msa0374590 | MtrunA17_Chr3g0125321 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 5.85e-12 | 65.1 |
| Msa0374590 | MtrunA17_Chr7g0259851 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 5.86e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374590 | AT1G21780.2 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0374590 | AT1G21780.1 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0374590 | AT1G55760.1 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 9.27e-111 | 325 |
| Msa0374590 | AT2G39760.2 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.03e-14 | 73.6 |
| Msa0374590 | AT2G39760.4 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0374590 | AT2G39760.3 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0374590 | AT2G39760.1 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.86e-14 | 73.2 |
| Msa0374590 | AT5G13060.1 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.10e-11 | 64.7 |
| Msa0374590 | AT3G56230.1 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.70e-11 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3_1:-74039544 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3_1:+74039418 | Msa0374590:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3_1:-74036870 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3_1:-74039477 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3_1:+74036872 | Msa0374590:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3_1:-74038359 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3_1:+74039233 | Msa0374590:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3_1:+74036703 | Msa0374590:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3_1:-74039174 | None:intergenic |
| ATGCCCTTGGACCATGTAAA+TGG | 0.341441 | 3_1:+74039580 | Msa0374590:three_prime_UTR |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3_1:+74039489 | Msa0374590:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3_1:+74036918 | Msa0374590:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3_1:-74039543 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3_1:+74036611 | Msa0374590:exon |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3_1:+74036948 | Msa0374590:CDS |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3_1:-74036876 | None:intergenic |
| GAATAGTTTAGTTAATTGTA+TGG | 0.406977 | 3_1:+74039547 | Msa0374590:exon |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3_1:+74039280 | Msa0374590:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3_1:+74038305 | Msa0374590:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3_1:+74038262 | Msa0374590:intron |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3_1:-74039110 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3_1:+74039208 | Msa0374590:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3_1:+74038283 | Msa0374590:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3_1:+74039256 | Msa0374590:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3_1:-74039350 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3_1:-74039330 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3_1:-74039018 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3_1:-74039539 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3_1:-74036946 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3_1:-74036903 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3_1:-74038371 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3_1:+74039362 | Msa0374590:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3_1:-74039012 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3_1:+74039391 | Msa0374590:CDS |
| ATCCGCCATGGTTGGAGAGA+TGG | 0.488556 | 3_1:-74036607 | None:intergenic |
| TGGGAAAATTACTATGCCCT+TGG | 0.497075 | 3_1:+74039567 | Msa0374590:three_prime_UTR |
| AATAGTTTAGTTAATTGTAT+GGG | 0.497219 | 3_1:+74039548 | Msa0374590:exon |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3_1:+74036709 | Msa0374590:CDS |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3_1:+74036696 | Msa0374590:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3_1:+74036610 | Msa0374590:exon |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3_1:-74039054 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3_1:-74039200 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3_1:+74039357 | Msa0374590:CDS |
| ACATTGATATACCATTTACA+TGG | 0.543059 | 3_1:-74039591 | None:intergenic |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3_1:-74036705 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3_1:+74039283 | Msa0374590:CDS |
| TATACCATTTACATGGTCCA+AGG | 0.562998 | 3_1:-74039584 | None:intergenic |
| TCAACCCTATCCGCCATGGT+TGG | 0.563052 | 3_1:-74036615 | None:intergenic |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3_1:+74038953 | Msa0374590:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3_1:+74038253 | Msa0374590:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3_1:+74038306 | Msa0374590:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3_1:+74038942 | Msa0374590:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3_1:-74038950 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3_1:-74039071 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3_1:-74039059 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3_1:+74039075 | Msa0374590:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3_1:-74039023 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3_1:-74038329 | None:intergenic |
| ACACTCCATCTCTCCAACCA+TGG | 0.595282 | 3_1:+74036602 | Msa0374590:exon |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3_1:-74039118 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3_1:-74039024 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3_1:+74039018 | Msa0374590:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3_1:+74039055 | Msa0374590:CDS |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3_1:+74036657 | Msa0374590:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3_1:+74039132 | Msa0374590:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3_1:-74036947 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3_1:-74036900 | None:intergenic |
| ATACCATTTACATGGTCCAA+GGG | 0.630829 | 3_1:-74039583 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3_1:-74036619 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3_1:-74036904 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3_1:-74036899 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3_1:+74036640 | Msa0374590:CDS |
| CTCCATCTCTCCAACCATGG+CGG | 0.697206 | 3_1:+74036605 | Msa0374590:exon |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3_1:-74036931 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3_1:+74039303 | Msa0374590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | - | chr3_1:74038779-74038798 | None:intergenic | 10.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | + | chr3_1:74037078-74037097 | Msa0374590:intron | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | + | chr3_1:74039418-74039437 | Msa0374590:CDS | 15.0% |
| !! | AATAGTTTAGTTAATTGTAT+GGG | + | chr3_1:74039548-74039567 | Msa0374590:exon | 15.0% |
| !!! | CAATTCGTTTTTTTTTTTTC+AGG | + | chr3_1:74036802-74036821 | Msa0374590:intron | 20.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | - | chr3_1:74038743-74038762 | None:intergenic | 20.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | + | chr3_1:74038788-74038807 | Msa0374590:intron | 20.0% |
| !! | ACAATTAACTAAACTATTCT+GGG | - | chr3_1:74039546-74039565 | None:intergenic | 20.0% |
| !! | TACAATTAACTAAACTATTC+TGG | - | chr3_1:74039547-74039566 | None:intergenic | 20.0% |
| !! | GAATAGTTTAGTTAATTGTA+TGG | + | chr3_1:74039547-74039566 | Msa0374590:exon | 20.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | - | chr3_1:74036684-74036703 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | + | chr3_1:74036826-74036845 | Msa0374590:CDS | 25.0% |
| !! | AACAAATAACGAAAAAGTGT+TGG | - | chr3_1:74036989-74037008 | None:intergenic | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | - | chr3_1:74037107-74037126 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | + | chr3_1:74037128-74037147 | Msa0374590:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | + | chr3_1:74037469-74037488 | Msa0374590:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | - | chr3_1:74037584-74037603 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | - | chr3_1:74037585-74037604 | None:intergenic | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | + | chr3_1:74037726-74037745 | Msa0374590:intron | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | + | chr3_1:74037727-74037746 | Msa0374590:intron | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | + | chr3_1:74037787-74037806 | Msa0374590:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | - | chr3_1:74037799-74037818 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | - | chr3_1:74037821-74037840 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | - | chr3_1:74037871-74037890 | None:intergenic | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | + | chr3_1:74037908-74037927 | Msa0374590:intron | 25.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | - | chr3_1:74037992-74038011 | None:intergenic | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | - | chr3_1:74038374-74038393 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | - | chr3_1:74038398-74038417 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | + | chr3_1:74038410-74038429 | Msa0374590:intron | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | - | chr3_1:74038559-74038578 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | + | chr3_1:74038614-74038633 | Msa0374590:intron | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | + | chr3_1:74038615-74038634 | Msa0374590:intron | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | + | chr3_1:74039233-74039252 | Msa0374590:CDS | 25.0% |
| ! | ACATTGATATACCATTTACA+TGG | - | chr3_1:74039594-74039613 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCTTTTCTTGGT+TGG | + | chr3_1:74036547-74036566 | Msa0374590:five_prime_UTR | 30.0% |
| CAATGGAAAATCGAAAACTT+CGG | + | chr3_1:74036657-74036676 | Msa0374590:CDS | 30.0% | |
| ! | TCAGGTACTTTTCAATAGTA+AGG | + | chr3_1:74036820-74036839 | Msa0374590:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | - | chr3_1:74036873-74036892 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | + | chr3_1:74036872-74036891 | Msa0374590:CDS | 30.0% |
| AGAACGTTAAAGTTTGTGTA+TGG | + | chr3_1:74037056-74037075 | Msa0374590:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | - | chr3_1:74037287-74037306 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | - | chr3_1:74037468-74037487 | None:intergenic | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | + | chr3_1:74037500-74037519 | Msa0374590:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | - | chr3_1:74037830-74037849 | None:intergenic | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | - | chr3_1:74037923-74037942 | None:intergenic | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | + | chr3_1:74037930-74037949 | Msa0374590:intron | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | - | chr3_1:74037993-74038012 | None:intergenic | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | - | chr3_1:74038106-74038125 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | + | chr3_1:74038120-74038139 | Msa0374590:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | + | chr3_1:74038148-74038167 | Msa0374590:intron | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | + | chr3_1:74038182-74038201 | Msa0374590:intron | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | + | chr3_1:74038218-74038237 | Msa0374590:intron | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | - | chr3_1:74038332-74038351 | None:intergenic | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | - | chr3_1:74038362-74038381 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | + | chr3_1:74038413-74038432 | Msa0374590:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | - | chr3_1:74038479-74038498 | None:intergenic | 30.0% | |
| ! | TGTTTTGCATGCATTATAAC+TGG | + | chr3_1:74038597-74038616 | Msa0374590:intron | 30.0% |
| AAATGAAAGAAAAGGGTTGT+TGG | + | chr3_1:74038622-74038641 | Msa0374590:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | + | chr3_1:74038662-74038681 | Msa0374590:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | + | chr3_1:74038670-74038689 | Msa0374590:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | + | chr3_1:74038671-74038690 | Msa0374590:intron | 30.0% | |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | - | chr3_1:74038735-74038754 | None:intergenic | 30.0% |
| AATTATAGCAATTATTCCGG+AGG | + | chr3_1:74038791-74038810 | Msa0374590:intron | 30.0% | |
| ! | TGATCTATTCTTTTGAACTC+AGG | + | chr3_1:74038919-74038938 | Msa0374590:intron | 30.0% |
| ! | GATCTATTCTTTTGAACTCA+GGG | + | chr3_1:74038920-74038939 | Msa0374590:intron | 30.0% |
| GCAGCTAATAAGTATGATAT+TGG | + | chr3_1:74039280-74039299 | Msa0374590:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | + | chr3_1:74039283-74039302 | Msa0374590:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | + | chr3_1:74039391-74039410 | Msa0374590:CDS | 30.0% | |
| TTAACTAAACTATTCTGGGT+TGG | - | chr3_1:74039542-74039561 | None:intergenic | 30.0% | |
| ! | CACGTTTCTCTTTCTTTTCT+TGG | + | chr3_1:74036543-74036562 | Msa0374590:five_prime_UTR | 35.0% |
| AAATCTGATCCTTTCAAGCT+CGG | + | chr3_1:74036696-74036715 | Msa0374590:CDS | 35.0% | |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | - | chr3_1:74036859-74036878 | None:intergenic | 35.0% |
| TGCTCCTTAGAAACTTTAGA+AGG | - | chr3_1:74036879-74036898 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | - | chr3_1:74036949-74036968 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | - | chr3_1:74036950-74036969 | None:intergenic | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | - | chr3_1:74036969-74036988 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | - | chr3_1:74037256-74037275 | None:intergenic | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | + | chr3_1:74037254-74037273 | Msa0374590:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | + | chr3_1:74037317-74037336 | Msa0374590:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | - | chr3_1:74037348-74037367 | None:intergenic | 35.0% |
| GGCTATAGGAAAATAACACA+TGG | + | chr3_1:74037352-74037371 | Msa0374590:intron | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | + | chr3_1:74037411-74037430 | Msa0374590:intron | 35.0% | |
| !! | CTATTGTACTCGGTTTGTTA+GGG | + | chr3_1:74037510-74037529 | Msa0374590:intron | 35.0% |
| TCTCTATCCAATGTCTTAGA+CGG | + | chr3_1:74038014-74038033 | Msa0374590:intron | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | + | chr3_1:74038053-74038072 | Msa0374590:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | - | chr3_1:74038066-74038085 | None:intergenic | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | + | chr3_1:74038067-74038086 | Msa0374590:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | + | chr3_1:74038112-74038131 | Msa0374590:intron | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | - | chr3_1:74038163-74038182 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | - | chr3_1:74038189-74038208 | None:intergenic | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | - | chr3_1:74038239-74038258 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | + | chr3_1:74038253-74038272 | Msa0374590:intron | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | + | chr3_1:74038306-74038325 | Msa0374590:CDS | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | - | chr3_1:74038420-74038439 | None:intergenic | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | + | chr3_1:74038501-74038520 | Msa0374590:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | + | chr3_1:74038549-74038568 | Msa0374590:intron | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | + | chr3_1:74038568-74038587 | Msa0374590:intron | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | - | chr3_1:74038725-74038744 | None:intergenic | 35.0% | |
| AAAATATGATACCAGTGCAG+AGG | - | chr3_1:74038884-74038903 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | - | chr3_1:74038953-74038972 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | + | chr3_1:74038953-74038972 | Msa0374590:CDS | 35.0% | |
| !! | TGAAACATGCTTTGAAACAC+AGG | - | chr3_1:74039121-74039140 | None:intergenic | 35.0% |
| CAAGTGACATGTCTTCAATA+TGG | - | chr3_1:74039177-74039196 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | + | chr3_1:74039303-74039322 | Msa0374590:CDS | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | - | chr3_1:74039333-74039352 | None:intergenic | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | - | chr3_1:74039353-74039372 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | + | chr3_1:74039357-74039376 | Msa0374590:CDS | 35.0% | |
| ATACCATTTACATGGTCCAA+GGG | - | chr3_1:74039586-74039605 | None:intergenic | 35.0% | |
| TATACCATTTACATGGTCCA+AGG | - | chr3_1:74039587-74039606 | None:intergenic | 35.0% | |
| ! | TTTTCTTGGTTGGACGAGAA+TGG | + | chr3_1:74036557-74036576 | Msa0374590:five_prime_UTR | 40.0% |
| CTGTTGCAAGATTAGCACAA+TGG | + | chr3_1:74036640-74036659 | Msa0374590:CDS | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | - | chr3_1:74036907-74036926 | None:intergenic | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | + | chr3_1:74036948-74036967 | Msa0374590:CDS | 40.0% |
| ACAATACTCGGTAGCATTTG+TGG | - | chr3_1:74037244-74037263 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | + | chr3_1:74037375-74037394 | Msa0374590:intron | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | + | chr3_1:74037376-74037395 | Msa0374590:intron | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | - | chr3_1:74037429-74037448 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | + | chr3_1:74037428-74037447 | Msa0374590:intron | 40.0% | |
| ! | GCTATTGTACTCGGTTTGTT+AGG | + | chr3_1:74037509-74037528 | Msa0374590:intron | 40.0% |
| GGATCGACTATAGTGATCTT+AGG | + | chr3_1:74038035-74038054 | Msa0374590:intron | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | - | chr3_1:74038097-74038116 | None:intergenic | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | - | chr3_1:74038098-74038117 | None:intergenic | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | + | chr3_1:74038157-74038176 | Msa0374590:intron | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | + | chr3_1:74038262-74038281 | Msa0374590:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | + | chr3_1:74038305-74038324 | Msa0374590:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | - | chr3_1:74038515-74038534 | None:intergenic | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | - | chr3_1:74038724-74038743 | None:intergenic | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | - | chr3_1:74038810-74038829 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | - | chr3_1:74038859-74038878 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | - | chr3_1:74038860-74038879 | None:intergenic | 40.0% | |
| ! | CTATTCTTTTGAACTCAGGG+TGG | + | chr3_1:74038923-74038942 | Msa0374590:intron | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | + | chr3_1:74038942-74038961 | Msa0374590:CDS | 40.0% |
| CATGTTTCATCACAACCTGA+AGG | + | chr3_1:74039132-74039151 | Msa0374590:CDS | 40.0% | |
| ! | TTGACGACTCTTTTTCCTTC+AGG | - | chr3_1:74039150-74039169 | None:intergenic | 40.0% |
| GCTCTTCGAAGTTACTTGTA+TGG | + | chr3_1:74039208-74039227 | Msa0374590:CDS | 40.0% | |
| AAACACTGTCTTGCATTGCT+TGG | + | chr3_1:74039256-74039275 | Msa0374590:CDS | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | + | chr3_1:74039362-74039381 | Msa0374590:CDS | 40.0% | |
| TGGGAAAATTACTATGCCCT+TGG | + | chr3_1:74039567-74039586 | Msa0374590:three_prime_UTR | 40.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | + | chr3_1:74036703-74036722 | Msa0374590:CDS | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | - | chr3_1:74036708-74036727 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | - | chr3_1:74036906-74036925 | None:intergenic | 45.0% | |
| AGCATTTGTGGTGGTTCGTA+GGG | - | chr3_1:74037232-74037251 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | - | chr3_1:74037233-74037252 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | - | chr3_1:74037241-74037260 | None:intergenic | 45.0% | |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | + | chr3_1:74037308-74037327 | Msa0374590:intron | 45.0% |
| TCCATATGGATCAGCCATGT+GGG | + | chr3_1:74037331-74037350 | Msa0374590:intron | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | - | chr3_1:74037389-74037408 | None:intergenic | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | + | chr3_1:74037542-74037561 | Msa0374590:intron | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | - | chr3_1:74037550-74037569 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | - | chr3_1:74037551-74037570 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | - | chr3_1:74037571-74037590 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | - | chr3_1:74037572-74037591 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | - | chr3_1:74038024-74038043 | None:intergenic | 45.0% |
| CAATGATCAAGGAAGACAGG+GGG | - | chr3_1:74038095-74038114 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | - | chr3_1:74038096-74038115 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | + | chr3_1:74038283-74038302 | Msa0374590:CDS | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | - | chr3_1:74038456-74038475 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | - | chr3_1:74039074-74039093 | None:intergenic | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | + | chr3_1:74039075-74039094 | Msa0374590:CDS | 45.0% | |
| !! | GCTTTGAAACACAGGAGAAC+TGG | - | chr3_1:74039113-74039132 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | + | chr3_1:74039476-74039495 | Msa0374590:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | + | chr3_1:74039477-74039496 | Msa0374590:CDS | 45.0% |
| ATGCCCTTGGACCATGTAAA+TGG | + | chr3_1:74039580-74039599 | Msa0374590:three_prime_UTR | 45.0% | |
| ACACTCCATCTCTCCAACCA+TGG | + | chr3_1:74036602-74036621 | Msa0374590:exon | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | + | chr3_1:74036709-74036728 | Msa0374590:CDS | 50.0% |
| GAATGAAACGAGCAACGGGT+GGG | - | chr3_1:74036902-74036921 | None:intergenic | 50.0% | |
| AGAATGAAACGAGCAACGGG+TGG | - | chr3_1:74036903-74036922 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | - | chr3_1:74037229-74037248 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | + | chr3_1:74037330-74037349 | Msa0374590:intron | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | - | chr3_1:74037543-74037562 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | + | chr3_1:74037541-74037560 | Msa0374590:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | + | chr3_1:74037554-74037573 | Msa0374590:intron | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | - | chr3_1:74038457-74038476 | None:intergenic | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | - | chr3_1:74039026-74039045 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | - | chr3_1:74039027-74039046 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | - | chr3_1:74039057-74039076 | None:intergenic | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | + | chr3_1:74039055-74039074 | Msa0374590:CDS | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | - | chr3_1:74039062-74039081 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | - | chr3_1:74039203-74039222 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | - | chr3_1:74039480-74039499 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | + | chr3_1:74039489-74039508 | Msa0374590:CDS | 50.0% | |
| CTCCATCTCTCCAACCATGG+CGG | + | chr3_1:74036605-74036624 | Msa0374590:exon | 55.0% | |
| ATCCGCCATGGTTGGAGAGA+TGG | - | chr3_1:74036610-74036629 | None:intergenic | 55.0% | |
| !! | TCTCTCCAACCATGGCGGAT+AGG | + | chr3_1:74036610-74036629 | Msa0374590:exon | 55.0% |
| !! | CTCTCCAACCATGGCGGATA+GGG | + | chr3_1:74036611-74036630 | Msa0374590:exon | 55.0% |
| TCAACCCTATCCGCCATGGT+TGG | - | chr3_1:74036618-74036637 | None:intergenic | 55.0% | |
| AGTGTCAACCCTATCCGCCA+TGG | - | chr3_1:74036622-74036641 | None:intergenic | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | + | chr3_1:74036918-74036937 | Msa0374590:CDS | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | - | chr3_1:74037335-74037354 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | + | chr3_1:74037338-74037357 | Msa0374590:intron | 55.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | + | chr3_1:74037437-74037456 | Msa0374590:intron | 55.0% | |
| CTGACACTGAACCTCTGCAC+TGG | + | chr3_1:74038870-74038889 | Msa0374590:intron | 55.0% | |
| CTTGCGGGAAGAACCAGCGA+CGG | - | chr3_1:74036934-74036953 | None:intergenic | 60.0% | |
| CGGACATACCGCTTGCTCCT+AGG | - | chr3_1:74037448-74037467 | None:intergenic | 60.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | - | chr3_1:74037220-74037239 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | - | chr3_1:74038088-74038107 | None:intergenic | 65.0% |
| CGAGCATGCGGGAGAGGCAA+TGG | - | chr3_1:74039015-74039034 | None:intergenic | 65.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | - | chr3_1:74039021-74039040 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | + | chr3_1:74039018-74039037 | Msa0374590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74036518 | 74039661 | 74036518 | ID=Msa0374590;Name=Msa0374590 |
| chr3_1 | mRNA | 74036518 | 74039661 | 74036518 | ID=Msa0374590-mRNA-1;Parent=Msa0374590;Name=Msa0374590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=103|1|1|1|1|1|4|109|327 |
| chr3_1 | exon | 74036518 | 74036730 | 74036518 | ID=Msa0374590-mRNA-1:exon:17009;Parent=Msa0374590-mRNA-1 |
| chr3_1 | exon | 74036824 | 74036969 | 74036824 | ID=Msa0374590-mRNA-1:exon:17010;Parent=Msa0374590-mRNA-1 |
| chr3_1 | exon | 74038265 | 74038380 | 74038265 | ID=Msa0374590-mRNA-1:exon:17011;Parent=Msa0374590-mRNA-1 |
| chr3_1 | exon | 74038941 | 74039661 | 74038941 | ID=Msa0374590-mRNA-1:exon:17012;Parent=Msa0374590-mRNA-1 |
| chr3_1 | five_prime_UTR | 74036518 | 74036620 | 74036518 | ID=Msa0374590-mRNA-1:five_prime_utr;Parent=Msa0374590-mRNA-1 |
| chr3_1 | CDS | 74036621 | 74036730 | 74036621 | ID=Msa0374590-mRNA-1:cds;Parent=Msa0374590-mRNA-1 |
| chr3_1 | CDS | 74036824 | 74036969 | 74036824 | ID=Msa0374590-mRNA-1:cds;Parent=Msa0374590-mRNA-1 |
| chr3_1 | CDS | 74038265 | 74038380 | 74038265 | ID=Msa0374590-mRNA-1:cds;Parent=Msa0374590-mRNA-1 |
| chr3_1 | CDS | 74038941 | 74039552 | 74038941 | ID=Msa0374590-mRNA-1:cds;Parent=Msa0374590-mRNA-1 |
| chr3_1 | three_prime_UTR | 74039553 | 74039661 | 74039553 | ID=Msa0374590-mRNA-1:three_prime_utr;Parent=Msa0374590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
