Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374550 | XP_003602063.1 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374550 | sp|Q9XHZ8|Y1178_ARATH | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.39e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374550 | G7J501 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0374550 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374460 | Msa0374550 | 0.991127 | 4.969298e-186 | -8.615850e-47 |
| Msa0374550 | Msa0374590 | 0.997205 | 1.417970e-238 | -8.615850e-47 |
| Msa0374550 | Msa0422350 | 0.898791 | 3.751045e-77 | -8.615850e-47 |
| Msa0374550 | Msa0470430 | 0.986159 | 7.274064e-166 | -8.615850e-47 |
| Msa0374550 | Msa0525390 | 0.945901 | 1.278027e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374550 | MtrunA17_Chr3g0124921 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| Msa0374550 | MtrunA17_Chr1g0159831 | 72.727 | 330 | 81 | 5 | 1 | 323 | 1 | 328 | 2.28e-173 | 484 |
| Msa0374550 | MtrunA17_Chr3g0103031 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 9.84e-116 | 337 |
| Msa0374550 | MtrunA17_Chr5g0447111 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 8.75e-97 | 289 |
| Msa0374550 | MtrunA17_Chr5g0447191 | 40.741 | 189 | 106 | 3 | 135 | 321 | 3 | 187 | 3.52e-38 | 134 |
| Msa0374550 | MtrunA17_Chr4g0029841 | 28.283 | 198 | 136 | 3 | 128 | 324 | 89 | 281 | 3.99e-17 | 80.1 |
| Msa0374550 | MtrunA17_Chr3g0125321 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 5.85e-12 | 65.1 |
| Msa0374550 | MtrunA17_Chr7g0259851 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 5.86e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374550 | AT1G21780.2 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0374550 | AT1G21780.1 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.41e-163 | 459 |
| Msa0374550 | AT1G55760.1 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 9.27e-111 | 325 |
| Msa0374550 | AT2G39760.2 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.03e-14 | 73.6 |
| Msa0374550 | AT2G39760.4 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0374550 | AT2G39760.3 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.10e-14 | 73.6 |
| Msa0374550 | AT2G39760.1 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.86e-14 | 73.2 |
| Msa0374550 | AT5G13060.1 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.10e-11 | 64.7 |
| Msa0374550 | AT3G56230.1 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.70e-11 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3_1:-74006955 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3_1:+74006829 | Msa0374550:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3_1:-74004278 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3_1:-74006888 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3_1:+74004280 | Msa0374550:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3_1:-74005767 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3_1:+74006644 | Msa0374550:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3_1:+74004111 | Msa0374550:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3_1:-74006585 | None:intergenic |
| ATGCCCTTGGACCATGTAAA+TGG | 0.341441 | 3_1:+74006991 | Msa0374550:three_prime_UTR |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3_1:+74006900 | Msa0374550:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3_1:+74004326 | Msa0374550:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3_1:-74006954 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3_1:+74004019 | Msa0374550:exon |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3_1:+74004356 | Msa0374550:CDS |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3_1:-74004284 | None:intergenic |
| GAATAGTTTAGTTAATTGTA+TGG | 0.406977 | 3_1:+74006958 | Msa0374550:exon |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3_1:+74006691 | Msa0374550:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3_1:+74005713 | Msa0374550:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3_1:+74005670 | Msa0374550:intron |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3_1:-74006521 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3_1:+74006619 | Msa0374550:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3_1:+74005691 | Msa0374550:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3_1:+74006667 | Msa0374550:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3_1:-74006761 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3_1:-74006741 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3_1:-74006429 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3_1:-74006950 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3_1:-74004354 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3_1:-74004311 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3_1:-74005779 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3_1:+74006773 | Msa0374550:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3_1:-74006423 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3_1:+74006802 | Msa0374550:CDS |
| ATCCGCCATGGTTGGAGAGA+TGG | 0.488556 | 3_1:-74004015 | None:intergenic |
| TGGGAAAATTACTATGCCCT+TGG | 0.497075 | 3_1:+74006978 | Msa0374550:three_prime_UTR |
| AATAGTTTAGTTAATTGTAT+GGG | 0.497219 | 3_1:+74006959 | Msa0374550:exon |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3_1:+74004117 | Msa0374550:CDS |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3_1:+74004104 | Msa0374550:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3_1:+74004018 | Msa0374550:exon |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3_1:-74006465 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3_1:-74006611 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3_1:+74006768 | Msa0374550:CDS |
| ACATTGATATACCATTTACA+TGG | 0.543059 | 3_1:-74007002 | None:intergenic |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3_1:-74004113 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3_1:+74006694 | Msa0374550:CDS |
| TATACCATTTACATGGTCCA+AGG | 0.562998 | 3_1:-74006995 | None:intergenic |
| TCAACCCTATCCGCCATGGT+TGG | 0.563052 | 3_1:-74004023 | None:intergenic |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3_1:+74006364 | Msa0374550:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3_1:+74005661 | Msa0374550:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3_1:+74005714 | Msa0374550:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3_1:+74006353 | Msa0374550:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3_1:-74006361 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3_1:-74006482 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3_1:-74006470 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3_1:+74006486 | Msa0374550:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3_1:-74006434 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3_1:-74005737 | None:intergenic |
| ACACTCCATCTCTCCAACCA+TGG | 0.595282 | 3_1:+74004010 | Msa0374550:exon |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3_1:-74006529 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3_1:-74006435 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3_1:+74006429 | Msa0374550:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3_1:+74006466 | Msa0374550:CDS |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3_1:+74004065 | Msa0374550:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3_1:+74006543 | Msa0374550:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3_1:-74004355 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3_1:-74004308 | None:intergenic |
| ATACCATTTACATGGTCCAA+GGG | 0.630829 | 3_1:-74006994 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3_1:-74004027 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3_1:-74004312 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3_1:-74004307 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3_1:+74004048 | Msa0374550:CDS |
| CTCCATCTCTCCAACCATGG+CGG | 0.697206 | 3_1:+74004013 | Msa0374550:exon |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3_1:-74004339 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3_1:+74006714 | Msa0374550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | - | chr3_1:74006187-74006206 | None:intergenic | 10.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | + | chr3_1:74004486-74004505 | Msa0374550:intron | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | + | chr3_1:74006829-74006848 | Msa0374550:CDS | 15.0% |
| !! | AATAGTTTAGTTAATTGTAT+GGG | + | chr3_1:74006959-74006978 | Msa0374550:exon | 15.0% |
| !!! | CAATTCGTTTTTTTTTTTTC+AGG | + | chr3_1:74004210-74004229 | Msa0374550:intron | 20.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | - | chr3_1:74006151-74006170 | None:intergenic | 20.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | + | chr3_1:74006196-74006215 | Msa0374550:intron | 20.0% |
| !! | ACAATTAACTAAACTATTCT+GGG | - | chr3_1:74006957-74006976 | None:intergenic | 20.0% |
| !! | TACAATTAACTAAACTATTC+TGG | - | chr3_1:74006958-74006977 | None:intergenic | 20.0% |
| !! | GAATAGTTTAGTTAATTGTA+TGG | + | chr3_1:74006958-74006977 | Msa0374550:exon | 20.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | - | chr3_1:74004092-74004111 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | + | chr3_1:74004234-74004253 | Msa0374550:CDS | 25.0% |
| !! | AACAAATAACGAAAAAGTGT+TGG | - | chr3_1:74004397-74004416 | None:intergenic | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | - | chr3_1:74004515-74004534 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | + | chr3_1:74004536-74004555 | Msa0374550:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | + | chr3_1:74004877-74004896 | Msa0374550:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | - | chr3_1:74004992-74005011 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | - | chr3_1:74004993-74005012 | None:intergenic | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | + | chr3_1:74005134-74005153 | Msa0374550:intron | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | + | chr3_1:74005135-74005154 | Msa0374550:intron | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | + | chr3_1:74005195-74005214 | Msa0374550:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | - | chr3_1:74005207-74005226 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | - | chr3_1:74005229-74005248 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | - | chr3_1:74005279-74005298 | None:intergenic | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | + | chr3_1:74005316-74005335 | Msa0374550:intron | 25.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | - | chr3_1:74005400-74005419 | None:intergenic | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | - | chr3_1:74005782-74005801 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | - | chr3_1:74005806-74005825 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | + | chr3_1:74005818-74005837 | Msa0374550:intron | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | - | chr3_1:74005967-74005986 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | + | chr3_1:74006022-74006041 | Msa0374550:intron | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | + | chr3_1:74006023-74006042 | Msa0374550:intron | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | + | chr3_1:74006644-74006663 | Msa0374550:CDS | 25.0% |
| ! | ACATTGATATACCATTTACA+TGG | - | chr3_1:74007005-74007024 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCTTTTCTTGGT+TGG | + | chr3_1:74003955-74003974 | Msa0374550:five_prime_UTR | 30.0% |
| CAATGGAAAATCGAAAACTT+CGG | + | chr3_1:74004065-74004084 | Msa0374550:CDS | 30.0% | |
| ! | TCAGGTACTTTTCAATAGTA+AGG | + | chr3_1:74004228-74004247 | Msa0374550:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | - | chr3_1:74004281-74004300 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | + | chr3_1:74004280-74004299 | Msa0374550:CDS | 30.0% |
| AGAACGTTAAAGTTTGTGTA+TGG | + | chr3_1:74004464-74004483 | Msa0374550:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | - | chr3_1:74004695-74004714 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | - | chr3_1:74004876-74004895 | None:intergenic | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | + | chr3_1:74004908-74004927 | Msa0374550:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | - | chr3_1:74005238-74005257 | None:intergenic | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | - | chr3_1:74005331-74005350 | None:intergenic | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | + | chr3_1:74005338-74005357 | Msa0374550:intron | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | - | chr3_1:74005401-74005420 | None:intergenic | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | - | chr3_1:74005514-74005533 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | + | chr3_1:74005528-74005547 | Msa0374550:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | + | chr3_1:74005556-74005575 | Msa0374550:intron | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | + | chr3_1:74005590-74005609 | Msa0374550:intron | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | + | chr3_1:74005626-74005645 | Msa0374550:intron | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | - | chr3_1:74005740-74005759 | None:intergenic | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | - | chr3_1:74005770-74005789 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | + | chr3_1:74005821-74005840 | Msa0374550:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | - | chr3_1:74005887-74005906 | None:intergenic | 30.0% | |
| ! | TGTTTTGCATGCATTATAAC+TGG | + | chr3_1:74006005-74006024 | Msa0374550:intron | 30.0% |
| AAATGAAAGAAAAGGGTTGT+TGG | + | chr3_1:74006030-74006049 | Msa0374550:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | + | chr3_1:74006070-74006089 | Msa0374550:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | + | chr3_1:74006078-74006097 | Msa0374550:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | + | chr3_1:74006079-74006098 | Msa0374550:intron | 30.0% | |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | - | chr3_1:74006143-74006162 | None:intergenic | 30.0% |
| AATTATAGCAATTATTCCGG+AGG | + | chr3_1:74006199-74006218 | Msa0374550:intron | 30.0% | |
| ! | TGATCTATTCTTTTGAACTC+AGG | + | chr3_1:74006330-74006349 | Msa0374550:intron | 30.0% |
| ! | GATCTATTCTTTTGAACTCA+GGG | + | chr3_1:74006331-74006350 | Msa0374550:intron | 30.0% |
| GCAGCTAATAAGTATGATAT+TGG | + | chr3_1:74006691-74006710 | Msa0374550:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | + | chr3_1:74006694-74006713 | Msa0374550:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | + | chr3_1:74006802-74006821 | Msa0374550:CDS | 30.0% | |
| TTAACTAAACTATTCTGGGT+TGG | - | chr3_1:74006953-74006972 | None:intergenic | 30.0% | |
| ! | CACGTTTCTCTTTCTTTTCT+TGG | + | chr3_1:74003951-74003970 | Msa0374550:five_prime_UTR | 35.0% |
| AAATCTGATCCTTTCAAGCT+CGG | + | chr3_1:74004104-74004123 | Msa0374550:CDS | 35.0% | |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | - | chr3_1:74004267-74004286 | None:intergenic | 35.0% |
| TGCTCCTTAGAAACTTTAGA+AGG | - | chr3_1:74004287-74004306 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | - | chr3_1:74004357-74004376 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | - | chr3_1:74004358-74004377 | None:intergenic | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | - | chr3_1:74004377-74004396 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | - | chr3_1:74004664-74004683 | None:intergenic | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | + | chr3_1:74004662-74004681 | Msa0374550:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | + | chr3_1:74004725-74004744 | Msa0374550:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | - | chr3_1:74004756-74004775 | None:intergenic | 35.0% |
| GGCTATAGGAAAATAACACA+TGG | + | chr3_1:74004760-74004779 | Msa0374550:intron | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | + | chr3_1:74004819-74004838 | Msa0374550:intron | 35.0% | |
| !! | CTATTGTACTCGGTTTGTTA+GGG | + | chr3_1:74004918-74004937 | Msa0374550:intron | 35.0% |
| TCTCTATCCAATGTCTTAGA+CGG | + | chr3_1:74005422-74005441 | Msa0374550:intron | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | + | chr3_1:74005461-74005480 | Msa0374550:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | - | chr3_1:74005474-74005493 | None:intergenic | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | + | chr3_1:74005475-74005494 | Msa0374550:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | + | chr3_1:74005520-74005539 | Msa0374550:intron | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | - | chr3_1:74005571-74005590 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | - | chr3_1:74005597-74005616 | None:intergenic | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | - | chr3_1:74005647-74005666 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | + | chr3_1:74005661-74005680 | Msa0374550:intron | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | + | chr3_1:74005714-74005733 | Msa0374550:CDS | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | - | chr3_1:74005828-74005847 | None:intergenic | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | + | chr3_1:74005909-74005928 | Msa0374550:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | + | chr3_1:74005957-74005976 | Msa0374550:intron | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | + | chr3_1:74005976-74005995 | Msa0374550:intron | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | - | chr3_1:74006133-74006152 | None:intergenic | 35.0% | |
| AAATATGATACCAGTGCAGA+GGG | - | chr3_1:74006293-74006312 | None:intergenic | 35.0% | |
| AAAATATGATACCAGTGCAG+AGG | - | chr3_1:74006294-74006313 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | - | chr3_1:74006364-74006383 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | + | chr3_1:74006364-74006383 | Msa0374550:CDS | 35.0% | |
| !! | TGAAACATGCTTTGAAACAC+AGG | - | chr3_1:74006532-74006551 | None:intergenic | 35.0% |
| CAAGTGACATGTCTTCAATA+TGG | - | chr3_1:74006588-74006607 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | + | chr3_1:74006714-74006733 | Msa0374550:CDS | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | - | chr3_1:74006744-74006763 | None:intergenic | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | - | chr3_1:74006764-74006783 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | + | chr3_1:74006768-74006787 | Msa0374550:CDS | 35.0% | |
| ATACCATTTACATGGTCCAA+GGG | - | chr3_1:74006997-74007016 | None:intergenic | 35.0% | |
| TATACCATTTACATGGTCCA+AGG | - | chr3_1:74006998-74007017 | None:intergenic | 35.0% | |
| ! | TTTTCTTGGTTGGACGAGAA+TGG | + | chr3_1:74003965-74003984 | Msa0374550:five_prime_UTR | 40.0% |
| CTGTTGCAAGATTAGCACAA+TGG | + | chr3_1:74004048-74004067 | Msa0374550:CDS | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | - | chr3_1:74004315-74004334 | None:intergenic | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | + | chr3_1:74004356-74004375 | Msa0374550:CDS | 40.0% |
| ACAATACTCGGTAGCATTTG+TGG | - | chr3_1:74004652-74004671 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | + | chr3_1:74004783-74004802 | Msa0374550:intron | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | + | chr3_1:74004784-74004803 | Msa0374550:intron | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | - | chr3_1:74004837-74004856 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | + | chr3_1:74004836-74004855 | Msa0374550:intron | 40.0% | |
| ! | GCTATTGTACTCGGTTTGTT+AGG | + | chr3_1:74004917-74004936 | Msa0374550:intron | 40.0% |
| GGATCGACTATAGTGATCTT+AGG | + | chr3_1:74005443-74005462 | Msa0374550:intron | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | - | chr3_1:74005505-74005524 | None:intergenic | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | - | chr3_1:74005506-74005525 | None:intergenic | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | + | chr3_1:74005565-74005584 | Msa0374550:intron | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | + | chr3_1:74005670-74005689 | Msa0374550:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | + | chr3_1:74005713-74005732 | Msa0374550:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | - | chr3_1:74005923-74005942 | None:intergenic | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | - | chr3_1:74006132-74006151 | None:intergenic | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | - | chr3_1:74006218-74006237 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | - | chr3_1:74006267-74006286 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | - | chr3_1:74006268-74006287 | None:intergenic | 40.0% | |
| AATATGATACCAGTGCAGAG+GGG | - | chr3_1:74006292-74006311 | None:intergenic | 40.0% | |
| ! | CTATTCTTTTGAACTCAGGG+TGG | + | chr3_1:74006334-74006353 | Msa0374550:intron | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | + | chr3_1:74006353-74006372 | Msa0374550:CDS | 40.0% |
| CATGTTTCATCACAACCTGA+AGG | + | chr3_1:74006543-74006562 | Msa0374550:CDS | 40.0% | |
| ! | TTGACGACTCTTTTTCCTTC+AGG | - | chr3_1:74006561-74006580 | None:intergenic | 40.0% |
| GCTCTTCGAAGTTACTTGTA+TGG | + | chr3_1:74006619-74006638 | Msa0374550:CDS | 40.0% | |
| AAACACTGTCTTGCATTGCT+TGG | + | chr3_1:74006667-74006686 | Msa0374550:CDS | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | + | chr3_1:74006773-74006792 | Msa0374550:CDS | 40.0% | |
| TGGGAAAATTACTATGCCCT+TGG | + | chr3_1:74006978-74006997 | Msa0374550:three_prime_UTR | 40.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | + | chr3_1:74004111-74004130 | Msa0374550:CDS | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | - | chr3_1:74004116-74004135 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | - | chr3_1:74004314-74004333 | None:intergenic | 45.0% | |
| AGCATTTGTGGTGGTTCGTA+GGG | - | chr3_1:74004640-74004659 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | - | chr3_1:74004641-74004660 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | - | chr3_1:74004649-74004668 | None:intergenic | 45.0% | |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | + | chr3_1:74004716-74004735 | Msa0374550:intron | 45.0% |
| TCCATATGGATCAGCCATGT+GGG | + | chr3_1:74004739-74004758 | Msa0374550:intron | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | - | chr3_1:74004797-74004816 | None:intergenic | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | + | chr3_1:74004950-74004969 | Msa0374550:intron | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | - | chr3_1:74004958-74004977 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | - | chr3_1:74004959-74004978 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | - | chr3_1:74004979-74004998 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | - | chr3_1:74004980-74004999 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | - | chr3_1:74005432-74005451 | None:intergenic | 45.0% |
| CAATGATCAAGGAAGACAGG+GGG | - | chr3_1:74005503-74005522 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | - | chr3_1:74005504-74005523 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | + | chr3_1:74005691-74005710 | Msa0374550:CDS | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | - | chr3_1:74005864-74005883 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | - | chr3_1:74006485-74006504 | None:intergenic | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | + | chr3_1:74006486-74006505 | Msa0374550:CDS | 45.0% | |
| !! | GCTTTGAAACACAGGAGAAC+TGG | - | chr3_1:74006524-74006543 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | + | chr3_1:74006887-74006906 | Msa0374550:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | + | chr3_1:74006888-74006907 | Msa0374550:CDS | 45.0% |
| ATGCCCTTGGACCATGTAAA+TGG | + | chr3_1:74006991-74007010 | Msa0374550:three_prime_UTR | 45.0% | |
| ACACTCCATCTCTCCAACCA+TGG | + | chr3_1:74004010-74004029 | Msa0374550:exon | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | + | chr3_1:74004117-74004136 | Msa0374550:CDS | 50.0% |
| GAATGAAACGAGCAACGGGT+GGG | - | chr3_1:74004310-74004329 | None:intergenic | 50.0% | |
| AGAATGAAACGAGCAACGGG+TGG | - | chr3_1:74004311-74004330 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | - | chr3_1:74004637-74004656 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | + | chr3_1:74004738-74004757 | Msa0374550:intron | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | - | chr3_1:74004951-74004970 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | + | chr3_1:74004949-74004968 | Msa0374550:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | + | chr3_1:74004962-74004981 | Msa0374550:intron | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | - | chr3_1:74005865-74005884 | None:intergenic | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | - | chr3_1:74006437-74006456 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | - | chr3_1:74006438-74006457 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | - | chr3_1:74006468-74006487 | None:intergenic | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | + | chr3_1:74006466-74006485 | Msa0374550:CDS | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | - | chr3_1:74006473-74006492 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | - | chr3_1:74006614-74006633 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | - | chr3_1:74006891-74006910 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | + | chr3_1:74006900-74006919 | Msa0374550:CDS | 50.0% | |
| CTCCATCTCTCCAACCATGG+CGG | + | chr3_1:74004013-74004032 | Msa0374550:exon | 55.0% | |
| ATCCGCCATGGTTGGAGAGA+TGG | - | chr3_1:74004018-74004037 | None:intergenic | 55.0% | |
| !! | TCTCTCCAACCATGGCGGAT+AGG | + | chr3_1:74004018-74004037 | Msa0374550:exon | 55.0% |
| !! | CTCTCCAACCATGGCGGATA+GGG | + | chr3_1:74004019-74004038 | Msa0374550:exon | 55.0% |
| TCAACCCTATCCGCCATGGT+TGG | - | chr3_1:74004026-74004045 | None:intergenic | 55.0% | |
| AGTGTCAACCCTATCCGCCA+TGG | - | chr3_1:74004030-74004049 | None:intergenic | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | + | chr3_1:74004326-74004345 | Msa0374550:CDS | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | - | chr3_1:74004743-74004762 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | + | chr3_1:74004746-74004765 | Msa0374550:intron | 55.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | + | chr3_1:74004845-74004864 | Msa0374550:intron | 55.0% | |
| CTTGCGGGAAGAACCAGCGA+CGG | - | chr3_1:74004342-74004361 | None:intergenic | 60.0% | |
| CGGACATACCGCTTGCTCCT+AGG | - | chr3_1:74004856-74004875 | None:intergenic | 60.0% | |
| GACACTGAACCCCTCTGCAC+TGG | + | chr3_1:74006280-74006299 | Msa0374550:intron | 60.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | - | chr3_1:74004628-74004647 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | - | chr3_1:74005496-74005515 | None:intergenic | 65.0% |
| CGAGCATGCGGGAGAGGCAA+TGG | - | chr3_1:74006426-74006445 | None:intergenic | 65.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | - | chr3_1:74006432-74006451 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | + | chr3_1:74006429-74006448 | Msa0374550:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74003926 | 74007072 | 74003926 | ID=Msa0374550;Name=Msa0374550 |
| chr3_1 | mRNA | 74003926 | 74007072 | 74003926 | ID=Msa0374550-mRNA-1;Parent=Msa0374550;Name=Msa0374550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=103|1|1|1|1|1|4|109|327 |
| chr3_1 | exon | 74003926 | 74004138 | 74003926 | ID=Msa0374550-mRNA-1:exon:17005;Parent=Msa0374550-mRNA-1 |
| chr3_1 | exon | 74004232 | 74004377 | 74004232 | ID=Msa0374550-mRNA-1:exon:17006;Parent=Msa0374550-mRNA-1 |
| chr3_1 | exon | 74005673 | 74005788 | 74005673 | ID=Msa0374550-mRNA-1:exon:17007;Parent=Msa0374550-mRNA-1 |
| chr3_1 | exon | 74006352 | 74007072 | 74006352 | ID=Msa0374550-mRNA-1:exon:17008;Parent=Msa0374550-mRNA-1 |
| chr3_1 | five_prime_UTR | 74003926 | 74004028 | 74003926 | ID=Msa0374550-mRNA-1:five_prime_utr;Parent=Msa0374550-mRNA-1 |
| chr3_1 | CDS | 74004029 | 74004138 | 74004029 | ID=Msa0374550-mRNA-1:cds;Parent=Msa0374550-mRNA-1 |
| chr3_1 | CDS | 74004232 | 74004377 | 74004232 | ID=Msa0374550-mRNA-1:cds;Parent=Msa0374550-mRNA-1 |
| chr3_1 | CDS | 74005673 | 74005788 | 74005673 | ID=Msa0374550-mRNA-1:cds;Parent=Msa0374550-mRNA-1 |
| chr3_1 | CDS | 74006352 | 74006963 | 74006352 | ID=Msa0374550-mRNA-1:cds;Parent=Msa0374550-mRNA-1 |
| chr3_1 | three_prime_UTR | 74006964 | 74007072 | 74006964 | ID=Msa0374550-mRNA-1:three_prime_utr;Parent=Msa0374550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
