AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0375470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAGACACCGGATCTATT+TGG 0.254975 3_1:+75235343 Msa0375470:CDS
CACTTTGAAGGAACCCAATA+TGG 0.307806 3_1:+75237214 Msa0375470:three_prime_UTR
CTCCTTCAGAAGACCATATT+GGG 0.311800 3_1:-75237227 None:intergenic
TCTCCTTCAGAAGACCATAT+TGG 0.329093 3_1:-75237228 None:intergenic
ACAATATTTGCATCCCGTTC+AGG 0.342728 3_1:-75237190 None:intergenic
ATCTTCTAAGAGCTGCAATA+TGG 0.364246 3_1:+75235308 Msa0375470:CDS
GGTTGAGGCGCTGCAATTGT+GGG 0.366102 3_1:-75236187 None:intergenic
GTAGTGAAGCCTTCGGATTT+CGG 0.370914 3_1:+75237093 Msa0375470:exon
GGGTTGAGGCGCTGCAATTG+TGG 0.382921 3_1:-75236188 None:intergenic
ATGTCTCATGTCTGCCTCAC+TGG 0.394407 3_1:+75235280 Msa0375470:CDS
AGACAGACACCAGATCTATT+TGG 0.399360 3_1:+75237380 Msa0375470:three_prime_UTR
GCAAATATTGTCCACTTTGA+AGG 0.405224 3_1:+75237202 Msa0375470:three_prime_UTR
AGATCTGGTGTCTGTCTTAG+AGG 0.408866 3_1:-75237374 None:intergenic
AAATAGATCCGGTGTCTTAG+AGG 0.427682 3_1:-75235341 None:intergenic
GTGTCTAATGTCTGCCTCAC+TGG 0.437903 3_1:+75237278 Msa0375470:three_prime_UTR
CATCAGAGGGATAGCGTCAC+TGG 0.449678 3_1:+75237256 Msa0375470:three_prime_UTR
TATTTGCAATGCTCTGTTAG+TGG 0.451857 3_1:-75237311 None:intergenic
CAGATCTATTTGGTCGCGAT+TGG 0.461120 3_1:+75237390 Msa0375470:three_prime_UTR
TCACAATGGAGAACCTGAAC+GGG 0.482530 3_1:+75237177 Msa0375470:three_prime_UTR
TCCTTTCAAGTGCTACTACA+AGG 0.488545 3_1:+75235387 Msa0375470:CDS
CAATCGCGACCAAATAGATC+TGG 0.502086 3_1:-75237389 None:intergenic
TAAGTCTAAGAGATGAAAGA+AGG 0.513851 3_1:-75235244 None:intergenic
GGCCAGGATCATCATGCTCG+TGG 0.514592 3_1:-75236211 None:intergenic
GCAACACTATGTCTTAGATC+TGG 0.516294 3_1:-75237334 None:intergenic
CCCCACGAGCATGATGATCC+TGG 0.517191 3_1:+75236209 Msa0375470:CDS
GCCAGGATCATCATGCTCGT+GGG 0.528569 3_1:-75236210 None:intergenic
CAAAAGCTTGATGTAACAGA+AGG 0.530816 3_1:+75237028 Msa0375470:CDS
ACCTTGTAGTAGCACTTGAA+AGG 0.540154 3_1:-75235388 None:intergenic
ACCTTGTAGTAGCACTTGAA+AGG 0.542327 3_1:-75237430 None:intergenic
TCACCGCCACCAAATAGATC+CGG 0.557945 3_1:-75235352 None:intergenic
TGAGGAGGTAGTGAAGCCTT+CGG 0.558811 3_1:+75237086 Msa0375470:exon
CAGTGACGCTATCCCTCTGA+TGG 0.561523 3_1:-75237255 None:intergenic
AGAAGGGTCTTTGAGAAATG+TGG 0.568966 3_1:+75237045 Msa0375470:CDS
CCAGGATCATCATGCTCGTG+GGG 0.570835 3_1:-75236209 None:intergenic
GTCTTTGAGAAATGTGGACA+AGG 0.580470 3_1:+75237051 Msa0375470:CDS
CATATTGGGTTCCTTCAAAG+TGG 0.580654 3_1:-75237213 None:intergenic
GTTGAGGCGCTGCAATTGTG+GGG 0.582552 3_1:-75236186 None:intergenic
ATCACAATGGAGAACCTGAA+CGG 0.586166 3_1:+75237176 Msa0375470:three_prime_UTR
ACGAGCTTCCTCTAAGACAC+CGG 0.592995 3_1:+75235333 Msa0375470:CDS
AAGACACCGGATCTATTTGG+TGG 0.595439 3_1:+75235346 Msa0375470:CDS
AACCCAATATGGTCTTCTGA+AGG 0.615222 3_1:+75237225 Msa0375470:three_prime_UTR
GTGAGGCAGACATGAGACAT+GGG 0.618587 3_1:-75235277 None:intergenic
TGAAGGAGAATGTCCATCAG+AGG 0.621822 3_1:+75237242 Msa0375470:three_prime_UTR
GAAGGAGAATGTCCATCAGA+GGG 0.624617 3_1:+75237243 Msa0375470:three_prime_UTR
ACACCGGATCTATTTGGTGG+CGG 0.626807 3_1:+75235349 Msa0375470:CDS
AAAAGCTTGATGTAACAGAA+GGG 0.629149 3_1:+75237029 Msa0375470:CDS
GATAATACACAATTACACAT+TGG 0.640510 3_1:-75235205 None:intergenic
AGTGAGGCAGACATGAGACA+TGG 0.648452 3_1:-75235278 None:intergenic
ATGCATCGACCGAAATCCGA+AGG 0.648898 3_1:-75237102 None:intergenic
AGGGATATCTCTCAATGAGG+AGG 0.655299 3_1:+75237071 Msa0375470:CDS
CAGGATCATCATGCTCGTGG+GGG 0.660813 3_1:-75236208 None:intergenic
GTGGAAGATGTGCACCAGTG+AGG 0.693533 3_1:-75237292 None:intergenic
ACAAGGGATATCTCTCAATG+AGG 0.698750 3_1:+75237068 Msa0375470:CDS
TGAGGCAGACATGAGACATG+GGG 0.699030 3_1:-75235276 None:intergenic
TCTTTGAGAAATGTGGACAA+GGG 0.699055 3_1:+75237052 Msa0375470:CDS
TTAGAAGATGTGCACCAGTG+AGG 0.702752 3_1:-75235294 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATTAAAAACTTAATTT+GGG - chr3_1:75235949-75235968 None:intergenic 10.0%
!! ATCAAATTAAAAACTTAATT+TGG - chr3_1:75235950-75235969 None:intergenic 10.0%
!! TCAAATTAAAAACTTAATTT+GGG - chr3_1:75235949-75235968 None:intergenic 10.0%
!! ATCAAATTAAAAACTTAATT+TGG - chr3_1:75235950-75235969 None:intergenic 10.0%
!!! TGTTTTGTTTACTAAATTAT+TGG - chr3_1:75236429-75236448 None:intergenic 15.0%
!! AAGTAAATCTATGATAAAAA+TGG + chr3_1:75236692-75236711 Msa0375470:intron 15.0%
!! AGTAAATCTATGATAAAAAT+GGG + chr3_1:75236693-75236712 Msa0375470:intron 15.0%
!!! TTTTTAACATAATATCACAA+TGG + chr3_1:75237163-75237182 Msa0375470:three_prime_UTR 15.0%
!!! TGTTTTGTTTACTAAATTAT+TGG - chr3_1:75236429-75236448 None:intergenic 15.0%
!! AAGTAAATCTATGATAAAAA+TGG + chr3_1:75236692-75236711 Msa0375470:intron 15.0%
!! AGTAAATCTATGATAAAAAT+GGG + chr3_1:75236693-75236712 Msa0375470:intron 15.0%
!!! TTTTTAACATAATATCACAA+TGG + chr3_1:75237163-75237182 Msa0375470:three_prime_UTR 15.0%
!!! AAAAACATGTAAAAGCATAA+TGG - chr3_1:75235447-75235466 None:intergenic 20.0%
!!! AATAACTATTCAATTTTGCT+AGG + chr3_1:75236095-75236114 Msa0375470:intron 20.0%
!! GTTTACTAAATTATTGGATT+TGG - chr3_1:75236423-75236442 None:intergenic 20.0%
!! AAATCTTGAGTTAAATTTAG+TGG + chr3_1:75236541-75236560 Msa0375470:intron 20.0%
!! TAAACAGAACATGAAAATAT+TGG + chr3_1:75236836-75236855 Msa0375470:intron 20.0%
!! AAACAGAACATGAAAATATT+GGG + chr3_1:75236837-75236856 Msa0375470:intron 20.0%
!! TTTCACACATTATATTGAAA+GGG + chr3_1:75236946-75236965 Msa0375470:intron 20.0%
!!! AAAAACATGTAAAAGCATAA+TGG - chr3_1:75235447-75235466 None:intergenic 20.0%
!!! AATAACTATTCAATTTTGCT+AGG + chr3_1:75236095-75236114 Msa0375470:intron 20.0%
!! GTTTACTAAATTATTGGATT+TGG - chr3_1:75236423-75236442 None:intergenic 20.0%
!! AAATCTTGAGTTAAATTTAG+TGG + chr3_1:75236541-75236560 Msa0375470:intron 20.0%
!! TAAACAGAACATGAAAATAT+TGG + chr3_1:75236836-75236855 Msa0375470:intron 20.0%
!! AAACAGAACATGAAAATATT+GGG + chr3_1:75236837-75236856 Msa0375470:intron 20.0%
!! TTTCACACATTATATTGAAA+GGG + chr3_1:75236946-75236965 Msa0375470:intron 20.0%
! GATAATACACAATTACACAT+TGG - chr3_1:75235208-75235227 None:intergenic 25.0%
! AAAGCATGAAATGAAATTCA+AGG - chr3_1:75236026-75236045 None:intergenic 25.0%
! GCAAAATTGAATAGTTATTC+AGG - chr3_1:75236094-75236113 None:intergenic 25.0%
!!! TTTAAGTTGAAAGATGGTTA+AGG - chr3_1:75236524-75236543 None:intergenic 25.0%
!!! TCAAGATTTAAGTTGAAAGA+TGG - chr3_1:75236530-75236549 None:intergenic 25.0%
!! TGCTAACAAATTGATAACAA+TGG + chr3_1:75236634-75236653 Msa0375470:intron 25.0%
! AACAGAACATGAAAATATTG+GGG + chr3_1:75236838-75236857 Msa0375470:intron 25.0%
! TCAATATAATGTGTGAAACA+AGG - chr3_1:75236944-75236963 None:intergenic 25.0%
! GTTTCACACATTATATTGAA+AGG + chr3_1:75236945-75236964 Msa0375470:intron 25.0%
! TTCACACATTATATTGAAAG+GGG + chr3_1:75236947-75236966 Msa0375470:intron 25.0%
!! GGTTACATGTTATCTATTTT+AGG + chr3_1:75236968-75236987 Msa0375470:intron 25.0%
!!! ATGTTATCTATTTTAGGTGT+GGG + chr3_1:75236974-75236993 Msa0375470:intron 25.0%
! GATAATACACAATTACACAT+TGG - chr3_1:75235208-75235227 None:intergenic 25.0%
! AAAGCATGAAATGAAATTCA+AGG - chr3_1:75236026-75236045 None:intergenic 25.0%
! GCAAAATTGAATAGTTATTC+AGG - chr3_1:75236094-75236113 None:intergenic 25.0%
!!! TTTAAGTTGAAAGATGGTTA+AGG - chr3_1:75236524-75236543 None:intergenic 25.0%
!!! TCAAGATTTAAGTTGAAAGA+TGG - chr3_1:75236530-75236549 None:intergenic 25.0%
!! TGCTAACAAATTGATAACAA+TGG + chr3_1:75236634-75236653 Msa0375470:intron 25.0%
! AACAGAACATGAAAATATTG+GGG + chr3_1:75236838-75236857 Msa0375470:intron 25.0%
! TCAATATAATGTGTGAAACA+AGG - chr3_1:75236944-75236963 None:intergenic 25.0%
! GTTTCACACATTATATTGAA+AGG + chr3_1:75236945-75236964 Msa0375470:intron 25.0%
! TTCACACATTATATTGAAAG+GGG + chr3_1:75236947-75236966 Msa0375470:intron 25.0%
!! GGTTACATGTTATCTATTTT+AGG + chr3_1:75236968-75236987 Msa0375470:intron 25.0%
!!! ATGTTATCTATTTTAGGTGT+GGG + chr3_1:75236974-75236993 Msa0375470:intron 25.0%
! CTGTTTTGTAAAACGTGTTT+AGG - chr3_1:75235180-75235199 None:intergenic 30.0%
TAAGTCTAAGAGATGAAAGA+AGG - chr3_1:75235247-75235266 None:intergenic 30.0%
TACAATACACCAATAATGGT+GGG + chr3_1:75235762-75235781 Msa0375470:intron 30.0%
GACTACTACTACTACTAAAA+GGG - chr3_1:75235836-75235855 None:intergenic 30.0%
AGACTACTACTACTACTAAA+AGG - chr3_1:75235837-75235856 None:intergenic 30.0%
! TTTTAGTAGTAGTAGTAGTC+TGG + chr3_1:75235836-75235855 Msa0375470:intron 30.0%
ACACATATACTACACTAACA+AGG - chr3_1:75235875-75235894 None:intergenic 30.0%
ACAAAAAAGACAAAGGAAGT+GGG - chr3_1:75235987-75236006 None:intergenic 30.0%
AACAAAAAAGACAAAGGAAG+TGG - chr3_1:75235988-75236007 None:intergenic 30.0%
TGAAATGAAATTCAAGGCTT+CGG - chr3_1:75236020-75236039 None:intergenic 30.0%
! GAATAGTTATTCAGGTTCAT+AGG - chr3_1:75236086-75236105 None:intergenic 30.0%
TTCAGATATTGGTAAAAGCT+TGG - chr3_1:75236152-75236171 None:intergenic 30.0%
AAGGTAAAGACTAGTAATGA+AGG + chr3_1:75236249-75236268 Msa0375470:intron 30.0%
TACTTTCAGCATTATACCTA+AGG - chr3_1:75236340-75236359 None:intergenic 30.0%
CTTTGCACTGTTTATTAAGT+TGG - chr3_1:75236590-75236609 None:intergenic 30.0%
ACAGAACATGAAAATATTGG+GGG + chr3_1:75236839-75236858 Msa0375470:intron 30.0%
!! CATGTTATCTATTTTAGGTG+TGG + chr3_1:75236973-75236992 Msa0375470:intron 30.0%
AAAAGCTTGATGTAACAGAA+GGG + chr3_1:75237029-75237048 Msa0375470:CDS 30.0%
! CTGTTTTGTAAAACGTGTTT+AGG - chr3_1:75235180-75235199 None:intergenic 30.0%
TAAGTCTAAGAGATGAAAGA+AGG - chr3_1:75235247-75235266 None:intergenic 30.0%
TACAATACACCAATAATGGT+GGG + chr3_1:75235762-75235781 Msa0375470:intron 30.0%
GACTACTACTACTACTAAAA+GGG - chr3_1:75235836-75235855 None:intergenic 30.0%
AGACTACTACTACTACTAAA+AGG - chr3_1:75235837-75235856 None:intergenic 30.0%
! TTTTAGTAGTAGTAGTAGTC+TGG + chr3_1:75235836-75235855 Msa0375470:intron 30.0%
ACACATATACTACACTAACA+AGG - chr3_1:75235875-75235894 None:intergenic 30.0%
ACAAAAAAGACAAAGGAAGT+GGG - chr3_1:75235987-75236006 None:intergenic 30.0%
AACAAAAAAGACAAAGGAAG+TGG - chr3_1:75235988-75236007 None:intergenic 30.0%
TGAAATGAAATTCAAGGCTT+CGG - chr3_1:75236020-75236039 None:intergenic 30.0%
! GAATAGTTATTCAGGTTCAT+AGG - chr3_1:75236086-75236105 None:intergenic 30.0%
TTCAGATATTGGTAAAAGCT+TGG - chr3_1:75236152-75236171 None:intergenic 30.0%
AAGGTAAAGACTAGTAATGA+AGG + chr3_1:75236249-75236268 Msa0375470:intron 30.0%
TACTTTCAGCATTATACCTA+AGG - chr3_1:75236340-75236359 None:intergenic 30.0%
CTTTGCACTGTTTATTAAGT+TGG - chr3_1:75236590-75236609 None:intergenic 30.0%
ACAGAACATGAAAATATTGG+GGG + chr3_1:75236839-75236858 Msa0375470:intron 30.0%
!! CATGTTATCTATTTTAGGTG+TGG + chr3_1:75236973-75236992 Msa0375470:intron 30.0%
AAAAGCTTGATGTAACAGAA+GGG + chr3_1:75237029-75237048 Msa0375470:CDS 30.0%
! ATCTTCTAAGAGCTGCAATA+TGG + chr3_1:75235308-75235327 Msa0375470:CDS 35.0%
AGAAGTAAAGAACAGATCTG+AGG - chr3_1:75235418-75235437 None:intergenic 35.0%
GAAAATGATGAACAGAACGA+AGG - chr3_1:75235474-75235493 None:intergenic 35.0%
!! TAGTTTTGCTGTGTTTTTCC+TGG + chr3_1:75235553-75235572 Msa0375470:intron 35.0%
ATTTGAGCTCAAACATTTCC+AGG - chr3_1:75235574-75235593 None:intergenic 35.0%
TACCTCTTGTGTAAAACACA+GGG + chr3_1:75235729-75235748 Msa0375470:intron 35.0%
TGCGTACAATACACCAATAA+TGG + chr3_1:75235758-75235777 Msa0375470:intron 35.0%
GTACAATACACCAATAATGG+TGG + chr3_1:75235761-75235780 Msa0375470:intron 35.0%
TGCAGCAACAAAAAAGACAA+AGG - chr3_1:75235994-75236013 None:intergenic 35.0%
! TTTTGCTAGGTTTAATGACG+CGG + chr3_1:75236108-75236127 Msa0375470:intron 35.0%
TATTGGTAAAAGCTTGGAGA+GGG - chr3_1:75236146-75236165 None:intergenic 35.0%
ATATTGGTAAAAGCTTGGAG+AGG - chr3_1:75236147-75236166 None:intergenic 35.0%
!! CTTTTTGCTGCTTCAGATAT+TGG - chr3_1:75236163-75236182 None:intergenic 35.0%
!!! TACCTTTTTTTGTAGCGTCT+AGG - chr3_1:75236235-75236254 None:intergenic 35.0%
!! GACTAGTAATGAAGGCATTA+TGG + chr3_1:75236257-75236276 Msa0375470:intron 35.0%
!! ATGAAGGCATTATGGAACAA+CGG + chr3_1:75236265-75236284 Msa0375470:intron 35.0%
GCTGAAAGTAGATAACCTAA+CGG + chr3_1:75236350-75236369 Msa0375470:intron 35.0%
! AGCTTCTCTTGATGATAAGT+AGG - chr3_1:75236770-75236789 None:intergenic 35.0%
CAGAACATGAAAATATTGGG+GGG + chr3_1:75236840-75236859 Msa0375470:intron 35.0%
!! TTATCTATTTTAGGTGTGGG+AGG + chr3_1:75236977-75236996 Msa0375470:intron 35.0%
CAAAAGCTTGATGTAACAGA+AGG + chr3_1:75237028-75237047 Msa0375470:CDS 35.0%
! TCTTTGAGAAATGTGGACAA+GGG + chr3_1:75237052-75237071 Msa0375470:CDS 35.0%
GCAAATATTGTCCACTTTGA+AGG + chr3_1:75237202-75237221 Msa0375470:three_prime_UTR 35.0%
TATTTGCAATGCTCTGTTAG+TGG - chr3_1:75237314-75237333 None:intergenic 35.0%
! ATCTTCTAAGAGCTGCAATA+TGG + chr3_1:75235308-75235327 Msa0375470:CDS 35.0%
AGAAGTAAAGAACAGATCTG+AGG - chr3_1:75235418-75235437 None:intergenic 35.0%
GAAAATGATGAACAGAACGA+AGG - chr3_1:75235474-75235493 None:intergenic 35.0%
!! TAGTTTTGCTGTGTTTTTCC+TGG + chr3_1:75235553-75235572 Msa0375470:intron 35.0%
ATTTGAGCTCAAACATTTCC+AGG - chr3_1:75235574-75235593 None:intergenic 35.0%
TACCTCTTGTGTAAAACACA+GGG + chr3_1:75235729-75235748 Msa0375470:intron 35.0%
TGCGTACAATACACCAATAA+TGG + chr3_1:75235758-75235777 Msa0375470:intron 35.0%
GTACAATACACCAATAATGG+TGG + chr3_1:75235761-75235780 Msa0375470:intron 35.0%
TGCAGCAACAAAAAAGACAA+AGG - chr3_1:75235994-75236013 None:intergenic 35.0%
! TTTTGCTAGGTTTAATGACG+CGG + chr3_1:75236108-75236127 Msa0375470:intron 35.0%
TATTGGTAAAAGCTTGGAGA+GGG - chr3_1:75236146-75236165 None:intergenic 35.0%
ATATTGGTAAAAGCTTGGAG+AGG - chr3_1:75236147-75236166 None:intergenic 35.0%
!! CTTTTTGCTGCTTCAGATAT+TGG - chr3_1:75236163-75236182 None:intergenic 35.0%
!!! TACCTTTTTTTGTAGCGTCT+AGG - chr3_1:75236235-75236254 None:intergenic 35.0%
!! GACTAGTAATGAAGGCATTA+TGG + chr3_1:75236257-75236276 Msa0375470:intron 35.0%
!! ATGAAGGCATTATGGAACAA+CGG + chr3_1:75236265-75236284 Msa0375470:intron 35.0%
GCTGAAAGTAGATAACCTAA+CGG + chr3_1:75236350-75236369 Msa0375470:intron 35.0%
! AGCTTCTCTTGATGATAAGT+AGG - chr3_1:75236770-75236789 None:intergenic 35.0%
CAGAACATGAAAATATTGGG+GGG + chr3_1:75236840-75236859 Msa0375470:intron 35.0%
!! TTATCTATTTTAGGTGTGGG+AGG + chr3_1:75236977-75236996 Msa0375470:intron 35.0%
CAAAAGCTTGATGTAACAGA+AGG + chr3_1:75237028-75237047 Msa0375470:CDS 35.0%
! TCTTTGAGAAATGTGGACAA+GGG + chr3_1:75237052-75237071 Msa0375470:CDS 35.0%
GCAAATATTGTCCACTTTGA+AGG + chr3_1:75237202-75237221 Msa0375470:three_prime_UTR 35.0%
TATTTGCAATGCTCTGTTAG+TGG - chr3_1:75237314-75237333 None:intergenic 35.0%
AAATAGATCCGGTGTCTTAG+AGG - chr3_1:75235344-75235363 None:intergenic 40.0%
! TCTAAGACACCGGATCTATT+TGG + chr3_1:75235343-75235362 Msa0375470:CDS 40.0%
! TCCTTTCAAGTGCTACTACA+AGG + chr3_1:75235387-75235406 Msa0375470:CDS 40.0%
ACCTTGTAGTAGCACTTGAA+AGG - chr3_1:75235391-75235410 None:intergenic 40.0%
GTAGTTGTCATGTGACTGAA+AGG + chr3_1:75235684-75235703 Msa0375470:intron 40.0%
TTACACAAGAGGTAGTTTCC+AGG - chr3_1:75235723-75235742 None:intergenic 40.0%
CTACCTCTTGTGTAAAACAC+AGG + chr3_1:75235728-75235747 Msa0375470:intron 40.0%
! TACCCTGTGTTTTACACAAG+AGG - chr3_1:75235734-75235753 None:intergenic 40.0%
CTTGTGTAAAACACAGGGTA+AGG + chr3_1:75235734-75235753 Msa0375470:intron 40.0%
CTACACTAACAAGGATTGCA+GGG - chr3_1:75235866-75235885 None:intergenic 40.0%
ACTACACTAACAAGGATTGC+AGG - chr3_1:75235867-75235886 None:intergenic 40.0%
AAAAAGACAAAGGAAGTGGG+AGG - chr3_1:75235984-75236003 None:intergenic 40.0%
TTTGCTAGGTTTAATGACGC+GGG + chr3_1:75236109-75236128 Msa0375470:intron 40.0%
TTAGTGCAGCCCTTGAAATT+GGG - chr3_1:75236297-75236316 None:intergenic 40.0%
TTTAGTGCAGCCCTTGAAAT+TGG - chr3_1:75236298-75236317 None:intergenic 40.0%
GGAGCCAGGAATTAAAGTTT+GGG + chr3_1:75236393-75236412 Msa0375470:intron 40.0%
GAGCCAGGAATTAAAGTTTG+GGG + chr3_1:75236394-75236413 Msa0375470:intron 40.0%
AGCCAGGAATTAAAGTTTGG+GGG + chr3_1:75236395-75236414 Msa0375470:intron 40.0%
!! TATTTTAGGTGTGGGAGGTA+TGG + chr3_1:75236982-75237001 Msa0375470:intron 40.0%
! AGAAGGGTCTTTGAGAAATG+TGG + chr3_1:75237045-75237064 Msa0375470:CDS 40.0%
! GTCTTTGAGAAATGTGGACA+AGG + chr3_1:75237051-75237070 Msa0375470:CDS 40.0%
ACAAGGGATATCTCTCAATG+AGG + chr3_1:75237068-75237087 Msa0375470:CDS 40.0%
ATCACAATGGAGAACCTGAA+CGG + chr3_1:75237176-75237195 Msa0375470:three_prime_UTR 40.0%
ACAATATTTGCATCCCGTTC+AGG - chr3_1:75237193-75237212 None:intergenic 40.0%
CATATTGGGTTCCTTCAAAG+TGG - chr3_1:75237216-75237235 None:intergenic 40.0%
! CACTTTGAAGGAACCCAATA+TGG + chr3_1:75237214-75237233 Msa0375470:three_prime_UTR 40.0%
AACCCAATATGGTCTTCTGA+AGG + chr3_1:75237225-75237244 Msa0375470:three_prime_UTR 40.0%
CTCCTTCAGAAGACCATATT+GGG - chr3_1:75237230-75237249 None:intergenic 40.0%
TCTCCTTCAGAAGACCATAT+TGG - chr3_1:75237231-75237250 None:intergenic 40.0%
GCAACACTATGTCTTAGATC+TGG - chr3_1:75237337-75237356 None:intergenic 40.0%
AGACAGACACCAGATCTATT+TGG + chr3_1:75237380-75237399 Msa0375470:three_prime_UTR 40.0%
AAATAGATCCGGTGTCTTAG+AGG - chr3_1:75235344-75235363 None:intergenic 40.0%
! TCTAAGACACCGGATCTATT+TGG + chr3_1:75235343-75235362 Msa0375470:CDS 40.0%
! TCCTTTCAAGTGCTACTACA+AGG + chr3_1:75235387-75235406 Msa0375470:CDS 40.0%
ACCTTGTAGTAGCACTTGAA+AGG - chr3_1:75235391-75235410 None:intergenic 40.0%
GTAGTTGTCATGTGACTGAA+AGG + chr3_1:75235684-75235703 Msa0375470:intron 40.0%
TTACACAAGAGGTAGTTTCC+AGG - chr3_1:75235723-75235742 None:intergenic 40.0%
CTACCTCTTGTGTAAAACAC+AGG + chr3_1:75235728-75235747 Msa0375470:intron 40.0%
! TACCCTGTGTTTTACACAAG+AGG - chr3_1:75235734-75235753 None:intergenic 40.0%
CTTGTGTAAAACACAGGGTA+AGG + chr3_1:75235734-75235753 Msa0375470:intron 40.0%
CTACACTAACAAGGATTGCA+GGG - chr3_1:75235866-75235885 None:intergenic 40.0%
ACTACACTAACAAGGATTGC+AGG - chr3_1:75235867-75235886 None:intergenic 40.0%
AAAAAGACAAAGGAAGTGGG+AGG - chr3_1:75235984-75236003 None:intergenic 40.0%
TTTGCTAGGTTTAATGACGC+GGG + chr3_1:75236109-75236128 Msa0375470:intron 40.0%
TTAGTGCAGCCCTTGAAATT+GGG - chr3_1:75236297-75236316 None:intergenic 40.0%
TTTAGTGCAGCCCTTGAAAT+TGG - chr3_1:75236298-75236317 None:intergenic 40.0%
GGAGCCAGGAATTAAAGTTT+GGG + chr3_1:75236393-75236412 Msa0375470:intron 40.0%
GAGCCAGGAATTAAAGTTTG+GGG + chr3_1:75236394-75236413 Msa0375470:intron 40.0%
AGCCAGGAATTAAAGTTTGG+GGG + chr3_1:75236395-75236414 Msa0375470:intron 40.0%
!! TATTTTAGGTGTGGGAGGTA+TGG + chr3_1:75236982-75237001 Msa0375470:intron 40.0%
! AGAAGGGTCTTTGAGAAATG+TGG + chr3_1:75237045-75237064 Msa0375470:CDS 40.0%
! GTCTTTGAGAAATGTGGACA+AGG + chr3_1:75237051-75237070 Msa0375470:CDS 40.0%
ACAAGGGATATCTCTCAATG+AGG + chr3_1:75237068-75237087 Msa0375470:CDS 40.0%
ATCACAATGGAGAACCTGAA+CGG + chr3_1:75237176-75237195 Msa0375470:three_prime_UTR 40.0%
ACAATATTTGCATCCCGTTC+AGG - chr3_1:75237193-75237212 None:intergenic 40.0%
CATATTGGGTTCCTTCAAAG+TGG - chr3_1:75237216-75237235 None:intergenic 40.0%
! CACTTTGAAGGAACCCAATA+TGG + chr3_1:75237214-75237233 Msa0375470:three_prime_UTR 40.0%
AACCCAATATGGTCTTCTGA+AGG + chr3_1:75237225-75237244 Msa0375470:three_prime_UTR 40.0%
CTCCTTCAGAAGACCATATT+GGG - chr3_1:75237230-75237249 None:intergenic 40.0%
TCTCCTTCAGAAGACCATAT+TGG - chr3_1:75237231-75237250 None:intergenic 40.0%
GCAACACTATGTCTTAGATC+TGG - chr3_1:75237337-75237356 None:intergenic 40.0%
AGACAGACACCAGATCTATT+TGG + chr3_1:75237380-75237399 Msa0375470:three_prime_UTR 40.0%
TTAGAAGATGTGCACCAGTG+AGG - chr3_1:75235297-75235316 None:intergenic 45.0%
AAGACACCGGATCTATTTGG+TGG + chr3_1:75235346-75235365 Msa0375470:CDS 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr3_1:75235690-75235709 Msa0375470:intron 45.0%
CTACTACTAAAAGGGCAACC+CGG - chr3_1:75235828-75235847 None:intergenic 45.0%
!!! TTTTTTGTAGCGTCTAGGCC+AGG - chr3_1:75236230-75236249 None:intergenic 45.0%
GGCCTAGACGCTACAAAAAA+AGG + chr3_1:75236230-75236249 Msa0375470:CDS 45.0%
ACGGAAATCCCCCAATTTCA+AGG + chr3_1:75236284-75236303 Msa0375470:intron 45.0%
CGGAAATCCCCCAATTTCAA+GGG + chr3_1:75236285-75236304 Msa0375470:intron 45.0%
TAGTGCAGCCCTTGAAATTG+GGG - chr3_1:75236296-75236315 None:intergenic 45.0%
AAGGGCTGCACTAAAAAGCT+GGG + chr3_1:75236303-75236322 Msa0375470:intron 45.0%
CGGAGCCAGGAATTAAAGTT+TGG + chr3_1:75236392-75236411 Msa0375470:intron 45.0%
GCCAGGAATTAAAGTTTGGG+GGG + chr3_1:75236396-75236415 Msa0375470:intron 45.0%
TCCCCCCAAACTTTAATTCC+TGG - chr3_1:75236400-75236419 None:intergenic 45.0%
CTAGCAAATTCACCCCTTGA+AGG - chr3_1:75236907-75236926 None:intergenic 45.0%
!! GGGGTGAATTTGCTAGAATC+TGG + chr3_1:75236911-75236930 Msa0375470:intron 45.0%
AGGGATATCTCTCAATGAGG+AGG + chr3_1:75237071-75237090 Msa0375470:CDS 45.0%
GTAGTGAAGCCTTCGGATTT+CGG + chr3_1:75237093-75237112 Msa0375470:exon 45.0%
TCACAATGGAGAACCTGAAC+GGG + chr3_1:75237177-75237196 Msa0375470:three_prime_UTR 45.0%
TGAAGGAGAATGTCCATCAG+AGG + chr3_1:75237242-75237261 Msa0375470:three_prime_UTR 45.0%
GAAGGAGAATGTCCATCAGA+GGG + chr3_1:75237243-75237262 Msa0375470:three_prime_UTR 45.0%
AGATCTGGTGTCTGTCTTAG+AGG - chr3_1:75237377-75237396 None:intergenic 45.0%
CAATCGCGACCAAATAGATC+TGG - chr3_1:75237392-75237411 None:intergenic 45.0%
CAGATCTATTTGGTCGCGAT+TGG + chr3_1:75237390-75237409 Msa0375470:three_prime_UTR 45.0%
TTAGAAGATGTGCACCAGTG+AGG - chr3_1:75235297-75235316 None:intergenic 45.0%
AAGACACCGGATCTATTTGG+TGG + chr3_1:75235346-75235365 Msa0375470:CDS 45.0%
GTCATGTGACTGAAAGGTCA+CGG + chr3_1:75235690-75235709 Msa0375470:intron 45.0%
CTACTACTAAAAGGGCAACC+CGG - chr3_1:75235828-75235847 None:intergenic 45.0%
!!! TTTTTTGTAGCGTCTAGGCC+AGG - chr3_1:75236230-75236249 None:intergenic 45.0%
GGCCTAGACGCTACAAAAAA+AGG + chr3_1:75236230-75236249 Msa0375470:CDS 45.0%
ACGGAAATCCCCCAATTTCA+AGG + chr3_1:75236284-75236303 Msa0375470:intron 45.0%
CGGAAATCCCCCAATTTCAA+GGG + chr3_1:75236285-75236304 Msa0375470:intron 45.0%
TAGTGCAGCCCTTGAAATTG+GGG - chr3_1:75236296-75236315 None:intergenic 45.0%
AAGGGCTGCACTAAAAAGCT+GGG + chr3_1:75236303-75236322 Msa0375470:intron 45.0%
CGGAGCCAGGAATTAAAGTT+TGG + chr3_1:75236392-75236411 Msa0375470:intron 45.0%
GCCAGGAATTAAAGTTTGGG+GGG + chr3_1:75236396-75236415 Msa0375470:intron 45.0%
TCCCCCCAAACTTTAATTCC+TGG - chr3_1:75236400-75236419 None:intergenic 45.0%
CTAGCAAATTCACCCCTTGA+AGG - chr3_1:75236907-75236926 None:intergenic 45.0%
!! GGGGTGAATTTGCTAGAATC+TGG + chr3_1:75236911-75236930 Msa0375470:intron 45.0%
AGGGATATCTCTCAATGAGG+AGG + chr3_1:75237071-75237090 Msa0375470:CDS 45.0%
GTAGTGAAGCCTTCGGATTT+CGG + chr3_1:75237093-75237112 Msa0375470:exon 45.0%
TCACAATGGAGAACCTGAAC+GGG + chr3_1:75237177-75237196 Msa0375470:three_prime_UTR 45.0%
TGAAGGAGAATGTCCATCAG+AGG + chr3_1:75237242-75237261 Msa0375470:three_prime_UTR 45.0%
GAAGGAGAATGTCCATCAGA+GGG + chr3_1:75237243-75237262 Msa0375470:three_prime_UTR 45.0%
AGATCTGGTGTCTGTCTTAG+AGG - chr3_1:75237377-75237396 None:intergenic 45.0%
CAATCGCGACCAAATAGATC+TGG - chr3_1:75237392-75237411 None:intergenic 45.0%
CAGATCTATTTGGTCGCGAT+TGG + chr3_1:75237390-75237409 Msa0375470:three_prime_UTR 45.0%
TGAGGCAGACATGAGACATG+GGG - chr3_1:75235279-75235298 None:intergenic 50.0%
GTGAGGCAGACATGAGACAT+GGG - chr3_1:75235280-75235299 None:intergenic 50.0%
AGTGAGGCAGACATGAGACA+TGG - chr3_1:75235281-75235300 None:intergenic 50.0%
ATGTCTCATGTCTGCCTCAC+TGG + chr3_1:75235280-75235299 Msa0375470:CDS 50.0%
!! ACGAGCTTCCTCTAAGACAC+CGG + chr3_1:75235333-75235352 Msa0375470:CDS 50.0%
! ACACCGGATCTATTTGGTGG+CGG + chr3_1:75235349-75235368 Msa0375470:CDS 50.0%
TCACCGCCACCAAATAGATC+CGG - chr3_1:75235355-75235374 None:intergenic 50.0%
AAAGGTCACGGTTCAAGTCC+TGG + chr3_1:75235702-75235721 Msa0375470:intron 50.0%
AGTGCAGCCCTTGAAATTGG+GGG - chr3_1:75236295-75236314 None:intergenic 50.0%
CAAGGGCTGCACTAAAAAGC+TGG + chr3_1:75236302-75236321 Msa0375470:intron 50.0%
CTGGGAATTGCGTCTACCTT+AGG + chr3_1:75236321-75236340 Msa0375470:intron 50.0%
!! TGCTTGAAGGCATTGCCGTT+AGG - chr3_1:75236368-75236387 None:intergenic 50.0%
TAACGGCAATGCCTTCAAGC+AGG + chr3_1:75236367-75236386 Msa0375470:intron 50.0%
AACGGCAATGCCTTCAAGCA+GGG + chr3_1:75236368-75236387 Msa0375470:intron 50.0%
!! GAAAATATTGGGGGGTACCG+TGG + chr3_1:75236848-75236867 Msa0375470:intron 50.0%
AATTCACCCCTTGAAGGCAG+TGG - chr3_1:75236901-75236920 None:intergenic 50.0%
TGAGGAGGTAGTGAAGCCTT+CGG + chr3_1:75237086-75237105 Msa0375470:exon 50.0%
! ATGCATCGACCGAAATCCGA+AGG - chr3_1:75237105-75237124 None:intergenic 50.0%
GTGTCTAATGTCTGCCTCAC+TGG + chr3_1:75237278-75237297 Msa0375470:three_prime_UTR 50.0%
TGAGGCAGACATGAGACATG+GGG - chr3_1:75235279-75235298 None:intergenic 50.0%
GTGAGGCAGACATGAGACAT+GGG - chr3_1:75235280-75235299 None:intergenic 50.0%
AGTGAGGCAGACATGAGACA+TGG - chr3_1:75235281-75235300 None:intergenic 50.0%
ATGTCTCATGTCTGCCTCAC+TGG + chr3_1:75235280-75235299 Msa0375470:CDS 50.0%
!! ACGAGCTTCCTCTAAGACAC+CGG + chr3_1:75235333-75235352 Msa0375470:CDS 50.0%
! ACACCGGATCTATTTGGTGG+CGG + chr3_1:75235349-75235368 Msa0375470:CDS 50.0%
TCACCGCCACCAAATAGATC+CGG - chr3_1:75235355-75235374 None:intergenic 50.0%
AAAGGTCACGGTTCAAGTCC+TGG + chr3_1:75235702-75235721 Msa0375470:intron 50.0%
AGTGCAGCCCTTGAAATTGG+GGG - chr3_1:75236295-75236314 None:intergenic 50.0%
CAAGGGCTGCACTAAAAAGC+TGG + chr3_1:75236302-75236321 Msa0375470:intron 50.0%
CTGGGAATTGCGTCTACCTT+AGG + chr3_1:75236321-75236340 Msa0375470:intron 50.0%
!! TGCTTGAAGGCATTGCCGTT+AGG - chr3_1:75236368-75236387 None:intergenic 50.0%
TAACGGCAATGCCTTCAAGC+AGG + chr3_1:75236367-75236386 Msa0375470:intron 50.0%
AACGGCAATGCCTTCAAGCA+GGG + chr3_1:75236368-75236387 Msa0375470:intron 50.0%
!! GAAAATATTGGGGGGTACCG+TGG + chr3_1:75236848-75236867 Msa0375470:intron 50.0%
AATTCACCCCTTGAAGGCAG+TGG - chr3_1:75236901-75236920 None:intergenic 50.0%
TGAGGAGGTAGTGAAGCCTT+CGG + chr3_1:75237086-75237105 Msa0375470:exon 50.0%
! ATGCATCGACCGAAATCCGA+AGG - chr3_1:75237105-75237124 None:intergenic 50.0%
GTGTCTAATGTCTGCCTCAC+TGG + chr3_1:75237278-75237297 Msa0375470:three_prime_UTR 50.0%
GGAAGGGGTCCCACCATTAT+TGG - chr3_1:75235774-75235793 None:intergenic 55.0%
! ATAATGGTGGGACCCCTTCC+CGG + chr3_1:75235774-75235793 Msa0375470:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr3_1:75235801-75235820 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr3_1:75235802-75235821 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr3_1:75235806-75235825 Msa0375470:intron 55.0%
!! GTTGAGGCGCTGCAATTGTG+GGG - chr3_1:75236189-75236208 None:intergenic 55.0%
!! GGTTGAGGCGCTGCAATTGT+GGG - chr3_1:75236190-75236209 None:intergenic 55.0%
CAGGATCATCATGCTCGTGG+GGG - chr3_1:75236211-75236230 None:intergenic 55.0%
CCAGGATCATCATGCTCGTG+GGG - chr3_1:75236212-75236231 None:intergenic 55.0%
GCCAGGATCATCATGCTCGT+GGG - chr3_1:75236213-75236232 None:intergenic 55.0%
ACGGCAATGCCTTCAAGCAG+GGG + chr3_1:75236369-75236388 Msa0375470:intron 55.0%
CAGTGACGCTATCCCTCTGA+TGG - chr3_1:75237258-75237277 None:intergenic 55.0%
CATCAGAGGGATAGCGTCAC+TGG + chr3_1:75237256-75237275 Msa0375470:three_prime_UTR 55.0%
GTGGAAGATGTGCACCAGTG+AGG - chr3_1:75237295-75237314 None:intergenic 55.0%
GGAAGGGGTCCCACCATTAT+TGG - chr3_1:75235774-75235793 None:intergenic 55.0%
! ATAATGGTGGGACCCCTTCC+CGG + chr3_1:75235774-75235793 Msa0375470:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr3_1:75235801-75235820 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG - chr3_1:75235802-75235821 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr3_1:75235806-75235825 Msa0375470:intron 55.0%
!! GTTGAGGCGCTGCAATTGTG+GGG - chr3_1:75236189-75236208 None:intergenic 55.0%
!! GGTTGAGGCGCTGCAATTGT+GGG - chr3_1:75236190-75236209 None:intergenic 55.0%
CAGGATCATCATGCTCGTGG+GGG - chr3_1:75236211-75236230 None:intergenic 55.0%
CCAGGATCATCATGCTCGTG+GGG - chr3_1:75236212-75236231 None:intergenic 55.0%
GCCAGGATCATCATGCTCGT+GGG - chr3_1:75236213-75236232 None:intergenic 55.0%
ACGGCAATGCCTTCAAGCAG+GGG + chr3_1:75236369-75236388 Msa0375470:intron 55.0%
CAGTGACGCTATCCCTCTGA+TGG - chr3_1:75237258-75237277 None:intergenic 55.0%
CATCAGAGGGATAGCGTCAC+TGG + chr3_1:75237256-75237275 Msa0375470:three_prime_UTR 55.0%
GTGGAAGATGTGCACCAGTG+AGG - chr3_1:75237295-75237314 None:intergenic 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr3_1:75235807-75235826 Msa0375470:intron 60.0%
!! GGGTTGAGGCGCTGCAATTG+TGG - chr3_1:75236191-75236210 None:intergenic 60.0%
CATCATGCTCGTGGGGGTTG+AGG - chr3_1:75236205-75236224 None:intergenic 60.0%
CCCCACGAGCATGATGATCC+TGG + chr3_1:75236209-75236228 Msa0375470:CDS 60.0%
GGCCAGGATCATCATGCTCG+TGG - chr3_1:75236214-75236233 None:intergenic 60.0%
GCAATGCCTTCAAGCAGGGG+CGG + chr3_1:75236372-75236391 Msa0375470:intron 60.0%
TCACCCCTTGAAGGCAGTGG+CGG - chr3_1:75236898-75236917 None:intergenic 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr3_1:75235807-75235826 Msa0375470:intron 60.0%
!! GGGTTGAGGCGCTGCAATTG+TGG - chr3_1:75236191-75236210 None:intergenic 60.0%
CATCATGCTCGTGGGGGTTG+AGG - chr3_1:75236205-75236224 None:intergenic 60.0%
CCCCACGAGCATGATGATCC+TGG + chr3_1:75236209-75236228 Msa0375470:CDS 60.0%
GGCCAGGATCATCATGCTCG+TGG - chr3_1:75236214-75236233 None:intergenic 60.0%
GCAATGCCTTCAAGCAGGGG+CGG + chr3_1:75236372-75236391 Msa0375470:intron 60.0%
TCACCCCTTGAAGGCAGTGG+CGG - chr3_1:75236898-75236917 None:intergenic 60.0%
CATACGCAGGGTCCGGGAAG+GGG - chr3_1:75235789-75235808 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr3_1:75235790-75235809 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr3_1:75235789-75235808 Msa0375470:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr3_1:75235790-75235809 Msa0375470:intron 65.0%
! AGGCAGTGGCGGAGCCACTA+GGG - chr3_1:75236887-75236906 None:intergenic 65.0%
! AAGGCAGTGGCGGAGCCACT+AGG - chr3_1:75236888-75236907 None:intergenic 65.0%
TGGCTCCGCCACTGCCTTCA+AGG + chr3_1:75236890-75236909 Msa0375470:intron 65.0%
GGCTCCGCCACTGCCTTCAA+GGG + chr3_1:75236891-75236910 Msa0375470:intron 65.0%
GCTCCGCCACTGCCTTCAAG+GGG + chr3_1:75236892-75236911 Msa0375470:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG - chr3_1:75235789-75235808 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - chr3_1:75235790-75235809 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + chr3_1:75235789-75235808 Msa0375470:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + chr3_1:75235790-75235809 Msa0375470:intron 65.0%
! AGGCAGTGGCGGAGCCACTA+GGG - chr3_1:75236887-75236906 None:intergenic 65.0%
! AAGGCAGTGGCGGAGCCACT+AGG - chr3_1:75236888-75236907 None:intergenic 65.0%
TGGCTCCGCCACTGCCTTCA+AGG + chr3_1:75236890-75236909 Msa0375470:intron 65.0%
GGCTCCGCCACTGCCTTCAA+GGG + chr3_1:75236891-75236910 Msa0375470:intron 65.0%
GCTCCGCCACTGCCTTCAAG+GGG + chr3_1:75236892-75236911 Msa0375470:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG - chr3_1:75235791-75235810 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr3_1:75235795-75235814 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr3_1:75235796-75235815 None:intergenic 70.0%
CTGGCTCCGCCCCTGCTTGA+AGG - chr3_1:75236381-75236400 None:intergenic 70.0%
CTTCAAGCAGGGGCGGAGCC+AGG + chr3_1:75236379-75236398 Msa0375470:intron 70.0%
GAGCCACTAGGGGGGCCAAG+GGG - chr3_1:75236876-75236895 None:intergenic 70.0%
GGAGCCACTAGGGGGGCCAA+GGG - chr3_1:75236877-75236896 None:intergenic 70.0%
! CAGTGGCGGAGCCACTAGGG+GGG - chr3_1:75236884-75236903 None:intergenic 70.0%
! GCAGTGGCGGAGCCACTAGG+GGG - chr3_1:75236885-75236904 None:intergenic 70.0%
! GGCAGTGGCGGAGCCACTAG+GGG - chr3_1:75236886-75236905 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG - chr3_1:75235791-75235810 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - chr3_1:75235795-75235814 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - chr3_1:75235796-75235815 None:intergenic 70.0%
CTGGCTCCGCCCCTGCTTGA+AGG - chr3_1:75236381-75236400 None:intergenic 70.0%
CTTCAAGCAGGGGCGGAGCC+AGG + chr3_1:75236379-75236398 Msa0375470:intron 70.0%
GAGCCACTAGGGGGGCCAAG+GGG - chr3_1:75236876-75236895 None:intergenic 70.0%
GGAGCCACTAGGGGGGCCAA+GGG - chr3_1:75236877-75236896 None:intergenic 70.0%
! CAGTGGCGGAGCCACTAGGG+GGG - chr3_1:75236884-75236903 None:intergenic 70.0%
! GCAGTGGCGGAGCCACTAGG+GGG - chr3_1:75236885-75236904 None:intergenic 70.0%
! GGCAGTGGCGGAGCCACTAG+GGG - chr3_1:75236886-75236905 None:intergenic 70.0%
!! GGGGGTACCGTGGCACCCCT+TGG + chr3_1:75236858-75236877 Msa0375470:intron 75.0%
!! AGGGGGGCCAAGGGGTGCCA+CGG - chr3_1:75236868-75236887 None:intergenic 75.0%
GCACCCCTTGGCCCCCCTAG+TGG + chr3_1:75236870-75236889 Msa0375470:intron 75.0%
CGGAGCCACTAGGGGGGCCA+AGG - chr3_1:75236878-75236897 None:intergenic 75.0%
!! GGGGGTACCGTGGCACCCCT+TGG + chr3_1:75236858-75236877 Msa0375470:intron 75.0%
!! AGGGGGGCCAAGGGGTGCCA+CGG - chr3_1:75236868-75236887 None:intergenic 75.0%
GCACCCCTTGGCCCCCCTAG+TGG + chr3_1:75236870-75236889 Msa0375470:intron 75.0%
CGGAGCCACTAGGGGGGCCA+AGG - chr3_1:75236878-75236897 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 75235156 75237438 75235156 ID=Msa0375470;Name=Msa0375470
chr3_1 mRNA 75235156 75237438 75235156 ID=Msa0375470-mRNA-1;Parent=Msa0375470;Name=Msa0375470-mRNA-1;_AED=0.23;_eAED=0.23;_QI=124|0.5|0.66|1|1|0.66|3|342|104
chr3_1 exon 75235156 75235408 75235156 ID=Msa0375470-mRNA-1:exon:17594;Parent=Msa0375470-mRNA-1
chr3_1 exon 75236173 75236251 75236173 ID=Msa0375470-mRNA-1:exon:17595;Parent=Msa0375470-mRNA-1
chr3_1 exon 75236990 75237438 75236990 ID=Msa0375470-mRNA-1:exon:17596;Parent=Msa0375470-mRNA-1
chr3_1 five_prime_UTR 75235156 75235279 75235156 ID=Msa0375470-mRNA-1:five_prime_utr;Parent=Msa0375470-mRNA-1
chr3_1 CDS 75235280 75235408 75235280 ID=Msa0375470-mRNA-1:cds;Parent=Msa0375470-mRNA-1
chr3_1 CDS 75236173 75236251 75236173 ID=Msa0375470-mRNA-1:cds;Parent=Msa0375470-mRNA-1
chr3_1 CDS 75236990 75237096 75236990 ID=Msa0375470-mRNA-1:cds;Parent=Msa0375470-mRNA-1
chr3_1 three_prime_UTR 75237097 75237438 75237097 ID=Msa0375470-mRNA-1:three_prime_utr;Parent=Msa0375470-mRNA-1
Gene Sequence

>Msa0375470

ATGTCTCATGTCTGCCTCACTGGTGCACATCTTCTAAGAGCTGCAATATGGACACGAGCTTCCTCTAAGACACCGGATCTATTTGGTGGCGGTGACAGCTTTGCTTTTCCTTTCAAGTGCTACTACAAGCAGCAAAAAGAATCCCCACAATTGCAGCGCCTCAACCCCCACGAGCATGATGATCCTGGCCTAGACGCTACAAAAAAAGGTGTGGGAGGTATGGTCACAATCTTTGATGCTTGCAGTCAAAAGCTTGATGTAACAGAAGGGTCTTTGAGAAATGTGGACAAGGGATATCTCTCAATGAGGAGGTAG
Protein sequence

>Msa0375470

MSHVCLTGAHLLRAAIWTRASSKTPDLFGGGDSFAFPFKCYYKQQKESPQLQRLNPHEHDDPGLDATKKGVGGMVTIFDACSQKLDVTEGSLRNVDKGYLSMRR*