AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0391340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAGACACCGGATCTATT+TGG 0.254975 3_2:-2895031 Msa0391340:CDS
CACTTTGAAGGAACCCAATA+TGG 0.307806 3_2:-2893085 Msa0391340:three_prime_UTR
CTCCTTCAGAAGACCATATT+GGG 0.311800 3_2:+2893072 None:intergenic
TCTCCTTCAGAAGACCATAT+TGG 0.329093 3_2:+2893071 None:intergenic
ACAATATTTGCATCCCGTTC+AGG 0.342728 3_2:+2893109 None:intergenic
ATCTTCTAAGAGCTGCAATA+TGG 0.364246 3_2:-2895066 Msa0391340:CDS
GGTTGAGGCGCTGCAATTGT+GGG 0.366102 3_2:+2894112 None:intergenic
GGGTTGAGGCGCTGCAATTG+TGG 0.382921 3_2:+2894111 None:intergenic
ATGTCTCATGTCTGCCTCAC+TGG 0.394407 3_2:-2895094 Msa0391340:CDS
AGACAGACACCAGATCTATT+TGG 0.399360 3_2:-2892919 Msa0391340:three_prime_UTR
GCAAATATTGTCCACTTTGA+AGG 0.405224 3_2:-2893097 Msa0391340:three_prime_UTR
AGATCTGGTGTCTGTCTTAG+AGG 0.408866 3_2:+2892925 None:intergenic
AAATAGATCCGGTGTCTTAG+AGG 0.427682 3_2:+2895033 None:intergenic
GTGCCTAATGTCTGCCTCAC+TGG 0.437903 3_2:-2893021 Msa0391340:three_prime_UTR
CATCAGAGGGATAGCGTCAC+TGG 0.449678 3_2:-2893043 Msa0391340:three_prime_UTR
TATTTGCAATGCTCTGTTAG+TGG 0.451857 3_2:+2892988 None:intergenic
CAGATCTATTTGGTCGCGAT+TGG 0.461120 3_2:-2892909 Msa0391340:three_prime_UTR
TCACAATGGAGAACCTGAAC+GGG 0.482530 3_2:-2893122 Msa0391340:three_prime_UTR
TCCTTTCAAGTGCTACTACA+AGG 0.488545 3_2:-2894987 Msa0391340:intron
CAATCGCGACCAAATAGATC+TGG 0.502086 3_2:+2892910 None:intergenic
TAAGTCTAAGAGATGAAAGA+AGG 0.513851 3_2:+2895130 None:intergenic
GGCCAGGATCATCATGCTCG+TGG 0.514592 3_2:+2894088 None:intergenic
GCAACACTATGTCTTAGATC+TGG 0.516294 3_2:+2892965 None:intergenic
CCCCACGAGCATGATGATCC+TGG 0.517191 3_2:-2894090 Msa0391340:CDS
GCCAGGATCATCATGCTCGT+GGG 0.528569 3_2:+2894089 None:intergenic
CAAAAGCTTGATGTAACAGA+AGG 0.530816 3_2:-2893271 Msa0391340:CDS
GCACCAGTGAGGCAGACATT+AGG 0.531925 3_2:+2893018 None:intergenic
ACCTTGTAGTAGCACTTGAA+AGG 0.540154 3_2:+2894986 None:intergenic
ACCTTGTAGTAGCACTTGAA+AGG 0.542327 3_2:+2892869 None:intergenic
TCACCGCCACCAAATAGATC+CGG 0.557945 3_2:+2895022 None:intergenic
TGAGGAGGTAGTGAAGCCTT+CGG 0.558811 3_2:-2893213 Msa0391340:exon
CAGTGACGCTATCCCTCTGA+TGG 0.561523 3_2:+2893044 None:intergenic
AGAAGGGTCTTTGAGAAATG+TGG 0.568966 3_2:-2893254 Msa0391340:CDS
CCAGGATCATCATGCTCGTG+GGG 0.570835 3_2:+2894090 None:intergenic
GTCTTTGAGAAATGTGGACA+AGG 0.580470 3_2:-2893248 Msa0391340:CDS
CATATTGGGTTCCTTCAAAG+TGG 0.580654 3_2:+2893086 None:intergenic
GTTGAGGCGCTGCAATTGTG+GGG 0.582552 3_2:+2894113 None:intergenic
ATCACAATGGAGAACCTGAA+CGG 0.586166 3_2:-2893123 Msa0391340:three_prime_UTR
ACGAGCTTCCTCTAAGACAC+CGG 0.592995 3_2:-2895041 Msa0391340:CDS
AAGACACCGGATCTATTTGG+TGG 0.595439 3_2:-2895028 Msa0391340:CDS
AACCCAATATGGTCTTCTGA+AGG 0.615222 3_2:-2893074 Msa0391340:three_prime_UTR
GTGAGGCAGACATGAGACAT+GGG 0.618587 3_2:+2895097 None:intergenic
TGAAGGAGAATGTCCATCAG+AGG 0.621822 3_2:-2893057 Msa0391340:three_prime_UTR
GAAGGAGAATGTCCATCAGA+GGG 0.624617 3_2:-2893056 Msa0391340:three_prime_UTR
ACACCGGATCTATTTGGTGG+CGG 0.626807 3_2:-2895025 Msa0391340:CDS
AAAAGCTTGATGTAACAGAA+GGG 0.629149 3_2:-2893270 Msa0391340:CDS
ATGCATCGACTGAAATCCGA+AGG 0.630290 3_2:+2893197 None:intergenic
GATAATACACAATTACACAT+TGG 0.640510 3_2:+2895169 None:intergenic
AGTGAGGCAGACATGAGACA+TGG 0.648452 3_2:+2895096 None:intergenic
AGGGATATCTCTCAATGAGG+AGG 0.655299 3_2:-2893228 Msa0391340:CDS
CAGGATCATCATGCTCGTGG+GGG 0.660813 3_2:+2894091 None:intergenic
GTGGAAGATGTGCACCAGTG+AGG 0.693533 3_2:+2893007 None:intergenic
ACAAGGGATATCTCTCAATG+AGG 0.698750 3_2:-2893231 Msa0391340:CDS
TGAGGCAGACATGAGACATG+GGG 0.699030 3_2:+2895098 None:intergenic
TCTTTGAGAAATGTGGACAA+GGG 0.699055 3_2:-2893247 Msa0391340:CDS
TTAGAAGATGTGCACCAGTG+AGG 0.702752 3_2:+2895080 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATTAAAAACTTAATTT+GGG + chr3_2:2893751-2893770 None:intergenic 10.0%
!! ATCAAATTAAAAACTTAATT+TGG + chr3_2:2893752-2893771 None:intergenic 10.0%
!! TCAAATTAAAAACTTAATTT+GGG + chr3_2:2893751-2893770 None:intergenic 10.0%
!! ATCAAATTAAAAACTTAATT+TGG + chr3_2:2893752-2893771 None:intergenic 10.0%
!!! TGTTTTGTTTACTAAATTAT+TGG + chr3_2:2894231-2894250 None:intergenic 15.0%
!! AAGTAAATCTATGATAAAAA+TGG - chr3_2:2894494-2894513 Msa0391340:intron 15.0%
!! AGTAAATCTATGATAAAAAT+GGG - chr3_2:2894495-2894514 Msa0391340:intron 15.0%
!!! TTTTTAACATAATATCACAA+TGG - chr3_2:2894965-2894984 Msa0391340:intron 15.0%
!!! TGTTTTGTTTACTAAATTAT+TGG + chr3_2:2894231-2894250 None:intergenic 15.0%
!! AAGTAAATCTATGATAAAAA+TGG - chr3_2:2894494-2894513 Msa0391340:intron 15.0%
!! AGTAAATCTATGATAAAAAT+GGG - chr3_2:2894495-2894514 Msa0391340:intron 15.0%
!!! TTTTTAACATAATATCACAA+TGG - chr3_2:2894965-2894984 Msa0391340:intron 15.0%
!!! AAAAACATGTAAAAGCATAA+TGG + chr3_2:2893174-2893193 None:intergenic 20.0%
!!! AATAACTATTCAATTTTGCT+AGG - chr3_2:2893897-2893916 Msa0391340:intron 20.0%
!! GTTTACTAAATTATTGGATT+TGG + chr3_2:2894225-2894244 None:intergenic 20.0%
!! AAATCTTGAGTTAAATTTAG+TGG - chr3_2:2894343-2894362 Msa0391340:intron 20.0%
!! TAAACAGAACATGAAAATAT+TGG - chr3_2:2894638-2894657 Msa0391340:intron 20.0%
!! AAACAGAACATGAAAATATT+GGG - chr3_2:2894639-2894658 Msa0391340:intron 20.0%
!! TTTCACACATTATATTGAAA+GGG - chr3_2:2894748-2894767 Msa0391340:intron 20.0%
!!! AAAAACATGTAAAAGCATAA+TGG + chr3_2:2893174-2893193 None:intergenic 20.0%
!!! AATAACTATTCAATTTTGCT+AGG - chr3_2:2893897-2893916 Msa0391340:intron 20.0%
!! GTTTACTAAATTATTGGATT+TGG + chr3_2:2894225-2894244 None:intergenic 20.0%
!! AAATCTTGAGTTAAATTTAG+TGG - chr3_2:2894343-2894362 Msa0391340:intron 20.0%
!! TAAACAGAACATGAAAATAT+TGG - chr3_2:2894638-2894657 Msa0391340:intron 20.0%
!! AAACAGAACATGAAAATATT+GGG - chr3_2:2894639-2894658 Msa0391340:intron 20.0%
!! TTTCACACATTATATTGAAA+GGG - chr3_2:2894748-2894767 Msa0391340:intron 20.0%
! GATAATACACAATTACACAT+TGG + chr3_2:2892935-2892954 None:intergenic 25.0%
! AAAGCATGAAATGAAATTCA+AGG + chr3_2:2893828-2893847 None:intergenic 25.0%
! GCAAAATTGAATAGTTATTC+AGG + chr3_2:2893896-2893915 None:intergenic 25.0%
!!! TTTAAGTTGAAAGATGGTTA+AGG + chr3_2:2894326-2894345 None:intergenic 25.0%
!!! TCAAGATTTAAGTTGAAAGA+TGG + chr3_2:2894332-2894351 None:intergenic 25.0%
!! TGCTAACAAATTGATAACAA+TGG - chr3_2:2894436-2894455 Msa0391340:intron 25.0%
! AACAGAACATGAAAATATTG+GGG - chr3_2:2894640-2894659 Msa0391340:intron 25.0%
! TCAATATAATGTGTGAAACA+AGG + chr3_2:2894746-2894765 None:intergenic 25.0%
! GTTTCACACATTATATTGAA+AGG - chr3_2:2894747-2894766 Msa0391340:intron 25.0%
! TTCACACATTATATTGAAAG+GGG - chr3_2:2894749-2894768 Msa0391340:intron 25.0%
!! GGTTACATGTTATCTATTTT+AGG - chr3_2:2894770-2894789 Msa0391340:intron 25.0%
!!! ATGTTATCTATTTTAGGTGT+GGG - chr3_2:2894776-2894795 Msa0391340:intron 25.0%
! GATAATACACAATTACACAT+TGG + chr3_2:2892935-2892954 None:intergenic 25.0%
! AAAGCATGAAATGAAATTCA+AGG + chr3_2:2893828-2893847 None:intergenic 25.0%
! GCAAAATTGAATAGTTATTC+AGG + chr3_2:2893896-2893915 None:intergenic 25.0%
!!! TTTAAGTTGAAAGATGGTTA+AGG + chr3_2:2894326-2894345 None:intergenic 25.0%
!!! TCAAGATTTAAGTTGAAAGA+TGG + chr3_2:2894332-2894351 None:intergenic 25.0%
!! TGCTAACAAATTGATAACAA+TGG - chr3_2:2894436-2894455 Msa0391340:intron 25.0%
! AACAGAACATGAAAATATTG+GGG - chr3_2:2894640-2894659 Msa0391340:intron 25.0%
! TCAATATAATGTGTGAAACA+AGG + chr3_2:2894746-2894765 None:intergenic 25.0%
! GTTTCACACATTATATTGAA+AGG - chr3_2:2894747-2894766 Msa0391340:intron 25.0%
! TTCACACATTATATTGAAAG+GGG - chr3_2:2894749-2894768 Msa0391340:intron 25.0%
!! GGTTACATGTTATCTATTTT+AGG - chr3_2:2894770-2894789 Msa0391340:intron 25.0%
!!! ATGTTATCTATTTTAGGTGT+GGG - chr3_2:2894776-2894795 Msa0391340:intron 25.0%
! CTGTTTTGTAAAACGTGTTT+AGG + chr3_2:2892907-2892926 None:intergenic 30.0%
TAAGTCTAAGAGATGAAAGA+AGG + chr3_2:2892974-2892993 None:intergenic 30.0%
TACAATACACCAATAATGGT+GGG - chr3_2:2893567-2893586 Msa0391340:intron 30.0%
ACACATATACTACACTAACA+AGG + chr3_2:2893677-2893696 None:intergenic 30.0%
ACAAAAAAGACAAAGGAAGT+GGG + chr3_2:2893789-2893808 None:intergenic 30.0%
AACAAAAAAGACAAAGGAAG+TGG + chr3_2:2893790-2893809 None:intergenic 30.0%
TGAAATGAAATTCAAGGCTT+CGG + chr3_2:2893822-2893841 None:intergenic 30.0%
! GAATAGTTATTCAGGTTCAT+AGG + chr3_2:2893888-2893907 None:intergenic 30.0%
TTCAGATATTGGTAAAAGCT+TGG + chr3_2:2893954-2893973 None:intergenic 30.0%
AAGGTAAAGACTAGTAATGA+AGG - chr3_2:2894051-2894070 Msa0391340:intron 30.0%
TACTTTCAGCATTATACCTA+AGG + chr3_2:2894142-2894161 None:intergenic 30.0%
CTTTGCACTGTTTATTAAGT+TGG + chr3_2:2894392-2894411 None:intergenic 30.0%
ACAGAACATGAAAATATTGG+GGG - chr3_2:2894641-2894660 Msa0391340:intron 30.0%
!! CATGTTATCTATTTTAGGTG+TGG - chr3_2:2894775-2894794 Msa0391340:intron 30.0%
AAAAGCTTGATGTAACAGAA+GGG - chr3_2:2894831-2894850 Msa0391340:intron 30.0%
! CTGTTTTGTAAAACGTGTTT+AGG + chr3_2:2892907-2892926 None:intergenic 30.0%
TAAGTCTAAGAGATGAAAGA+AGG + chr3_2:2892974-2892993 None:intergenic 30.0%
TACAATACACCAATAATGGT+GGG - chr3_2:2893567-2893586 Msa0391340:intron 30.0%
ACACATATACTACACTAACA+AGG + chr3_2:2893677-2893696 None:intergenic 30.0%
ACAAAAAAGACAAAGGAAGT+GGG + chr3_2:2893789-2893808 None:intergenic 30.0%
AACAAAAAAGACAAAGGAAG+TGG + chr3_2:2893790-2893809 None:intergenic 30.0%
TGAAATGAAATTCAAGGCTT+CGG + chr3_2:2893822-2893841 None:intergenic 30.0%
! GAATAGTTATTCAGGTTCAT+AGG + chr3_2:2893888-2893907 None:intergenic 30.0%
TTCAGATATTGGTAAAAGCT+TGG + chr3_2:2893954-2893973 None:intergenic 30.0%
AAGGTAAAGACTAGTAATGA+AGG - chr3_2:2894051-2894070 Msa0391340:intron 30.0%
TACTTTCAGCATTATACCTA+AGG + chr3_2:2894142-2894161 None:intergenic 30.0%
CTTTGCACTGTTTATTAAGT+TGG + chr3_2:2894392-2894411 None:intergenic 30.0%
ACAGAACATGAAAATATTGG+GGG - chr3_2:2894641-2894660 Msa0391340:intron 30.0%
!! CATGTTATCTATTTTAGGTG+TGG - chr3_2:2894775-2894794 Msa0391340:intron 30.0%
AAAAGCTTGATGTAACAGAA+GGG - chr3_2:2894831-2894850 Msa0391340:intron 30.0%
! ATCTTCTAAGAGCTGCAATA+TGG - chr3_2:2893035-2893054 Msa0391340:three_prime_UTR 35.0%
AGAAGTAAAGAACAGATCTG+AGG + chr3_2:2893145-2893164 None:intergenic 35.0%
GAAAATGATGAACAGAACGA+AGG + chr3_2:2893201-2893220 None:intergenic 35.0%
!! TAGTTTTGCTGTGTTTTTCC+TGG - chr3_2:2893280-2893299 Msa0391340:CDS 35.0%
ATTTGAGCTCAAACATTTCC+AGG + chr3_2:2893301-2893320 None:intergenic 35.0%
TACCTCTTGTGTAAAACACA+GGG - chr3_2:2893534-2893553 Msa0391340:intron 35.0%
TGCGTACAATACACCAATAA+TGG - chr3_2:2893563-2893582 Msa0391340:intron 35.0%
GTACAATACACCAATAATGG+TGG - chr3_2:2893566-2893585 Msa0391340:intron 35.0%
CCAGACTACTACTACTAAAA+GGG + chr3_2:2893641-2893660 None:intergenic 35.0%
ACCAGACTACTACTACTAAA+AGG + chr3_2:2893642-2893661 None:intergenic 35.0%
TGCAGCAACAAAAAAGACAA+AGG + chr3_2:2893796-2893815 None:intergenic 35.0%
! TTTTGCTAGGTTTAATGACG+CGG - chr3_2:2893910-2893929 Msa0391340:intron 35.0%
TATTGGTAAAAGCTTGGAGA+GGG + chr3_2:2893948-2893967 None:intergenic 35.0%
ATATTGGTAAAAGCTTGGAG+AGG + chr3_2:2893949-2893968 None:intergenic 35.0%
!! CTTTTTGCTGCTTCAGATAT+TGG + chr3_2:2893965-2893984 None:intergenic 35.0%
!!! TACCTTTTTTTGTAGCGTCT+AGG + chr3_2:2894037-2894056 None:intergenic 35.0%
!! GACTAGTAATGAAGGCATTA+TGG - chr3_2:2894059-2894078 Msa0391340:intron 35.0%
!! ATGAAGGCATTATGGAACAA+CGG - chr3_2:2894067-2894086 Msa0391340:intron 35.0%
GCTGAAAGTAGATAACCTAA+CGG - chr3_2:2894152-2894171 Msa0391340:intron 35.0%
! AGCTTCTCTTGATGATAAGT+AGG + chr3_2:2894572-2894591 None:intergenic 35.0%
CAGAACATGAAAATATTGGG+GGG - chr3_2:2894642-2894661 Msa0391340:intron 35.0%
!! TTATCTATTTTAGGTGTGGG+AGG - chr3_2:2894779-2894798 Msa0391340:intron 35.0%
CAAAAGCTTGATGTAACAGA+AGG - chr3_2:2894830-2894849 Msa0391340:intron 35.0%
! TCTTTGAGAAATGTGGACAA+GGG - chr3_2:2894854-2894873 Msa0391340:intron 35.0%
GCAAATATTGTCCACTTTGA+AGG - chr3_2:2895004-2895023 Msa0391340:CDS 35.0%
TATTTGCAATGCTCTGTTAG+TGG + chr3_2:2895116-2895135 None:intergenic 35.0%
! ATCTTCTAAGAGCTGCAATA+TGG - chr3_2:2893035-2893054 Msa0391340:three_prime_UTR 35.0%
AGAAGTAAAGAACAGATCTG+AGG + chr3_2:2893145-2893164 None:intergenic 35.0%
GAAAATGATGAACAGAACGA+AGG + chr3_2:2893201-2893220 None:intergenic 35.0%
!! TAGTTTTGCTGTGTTTTTCC+TGG - chr3_2:2893280-2893299 Msa0391340:CDS 35.0%
ATTTGAGCTCAAACATTTCC+AGG + chr3_2:2893301-2893320 None:intergenic 35.0%
TACCTCTTGTGTAAAACACA+GGG - chr3_2:2893534-2893553 Msa0391340:intron 35.0%
TGCGTACAATACACCAATAA+TGG - chr3_2:2893563-2893582 Msa0391340:intron 35.0%
GTACAATACACCAATAATGG+TGG - chr3_2:2893566-2893585 Msa0391340:intron 35.0%
CCAGACTACTACTACTAAAA+GGG + chr3_2:2893641-2893660 None:intergenic 35.0%
ACCAGACTACTACTACTAAA+AGG + chr3_2:2893642-2893661 None:intergenic 35.0%
TGCAGCAACAAAAAAGACAA+AGG + chr3_2:2893796-2893815 None:intergenic 35.0%
! TTTTGCTAGGTTTAATGACG+CGG - chr3_2:2893910-2893929 Msa0391340:intron 35.0%
TATTGGTAAAAGCTTGGAGA+GGG + chr3_2:2893948-2893967 None:intergenic 35.0%
ATATTGGTAAAAGCTTGGAG+AGG + chr3_2:2893949-2893968 None:intergenic 35.0%
!! CTTTTTGCTGCTTCAGATAT+TGG + chr3_2:2893965-2893984 None:intergenic 35.0%
!!! TACCTTTTTTTGTAGCGTCT+AGG + chr3_2:2894037-2894056 None:intergenic 35.0%
!! GACTAGTAATGAAGGCATTA+TGG - chr3_2:2894059-2894078 Msa0391340:intron 35.0%
!! ATGAAGGCATTATGGAACAA+CGG - chr3_2:2894067-2894086 Msa0391340:intron 35.0%
GCTGAAAGTAGATAACCTAA+CGG - chr3_2:2894152-2894171 Msa0391340:intron 35.0%
! AGCTTCTCTTGATGATAAGT+AGG + chr3_2:2894572-2894591 None:intergenic 35.0%
CAGAACATGAAAATATTGGG+GGG - chr3_2:2894642-2894661 Msa0391340:intron 35.0%
!! TTATCTATTTTAGGTGTGGG+AGG - chr3_2:2894779-2894798 Msa0391340:intron 35.0%
CAAAAGCTTGATGTAACAGA+AGG - chr3_2:2894830-2894849 Msa0391340:intron 35.0%
! TCTTTGAGAAATGTGGACAA+GGG - chr3_2:2894854-2894873 Msa0391340:intron 35.0%
GCAAATATTGTCCACTTTGA+AGG - chr3_2:2895004-2895023 Msa0391340:CDS 35.0%
TATTTGCAATGCTCTGTTAG+TGG + chr3_2:2895116-2895135 None:intergenic 35.0%
AAATAGATCCGGTGTCTTAG+AGG + chr3_2:2893071-2893090 None:intergenic 40.0%
! TCTAAGACACCGGATCTATT+TGG - chr3_2:2893070-2893089 Msa0391340:three_prime_UTR 40.0%
! TCCTTTCAAGTGCTACTACA+AGG - chr3_2:2893114-2893133 Msa0391340:three_prime_UTR 40.0%
ACCTTGTAGTAGCACTTGAA+AGG + chr3_2:2893118-2893137 None:intergenic 40.0%
GTAGTTGTCATGTGACTGAA+AGG - chr3_2:2893489-2893508 Msa0391340:intron 40.0%
TTACACAAGAGGTAGTTTCC+AGG + chr3_2:2893528-2893547 None:intergenic 40.0%
CTACCTCTTGTGTAAAACAC+AGG - chr3_2:2893533-2893552 Msa0391340:intron 40.0%
! TACCCTGTGTTTTACACAAG+AGG + chr3_2:2893539-2893558 None:intergenic 40.0%
CTTGTGTAAAACACAGGGTA+AGG - chr3_2:2893539-2893558 Msa0391340:intron 40.0%
! CCCTTTTAGTAGTAGTAGTC+TGG - chr3_2:2893638-2893657 Msa0391340:intron 40.0%
CTACACTAACAAGGATTGCA+GGG + chr3_2:2893668-2893687 None:intergenic 40.0%
ACTACACTAACAAGGATTGC+AGG + chr3_2:2893669-2893688 None:intergenic 40.0%
AAAAAGACAAAGGAAGTGGG+AGG + chr3_2:2893786-2893805 None:intergenic 40.0%
TTTGCTAGGTTTAATGACGC+GGG - chr3_2:2893911-2893930 Msa0391340:intron 40.0%
TTAGTGCAGCCCTTGAAATT+GGG + chr3_2:2894099-2894118 None:intergenic 40.0%
TTTAGTGCAGCCCTTGAAAT+TGG + chr3_2:2894100-2894119 None:intergenic 40.0%
GGAGCCAGGAATTAAAGTTT+GGG - chr3_2:2894195-2894214 Msa0391340:intron 40.0%
GAGCCAGGAATTAAAGTTTG+GGG - chr3_2:2894196-2894215 Msa0391340:intron 40.0%
AGCCAGGAATTAAAGTTTGG+GGG - chr3_2:2894197-2894216 Msa0391340:intron 40.0%
!! TATTTTAGGTGTGGGAGGTA+TGG - chr3_2:2894784-2894803 Msa0391340:intron 40.0%
! AGAAGGGTCTTTGAGAAATG+TGG - chr3_2:2894847-2894866 Msa0391340:intron 40.0%
! GTCTTTGAGAAATGTGGACA+AGG - chr3_2:2894853-2894872 Msa0391340:intron 40.0%
ACAAGGGATATCTCTCAATG+AGG - chr3_2:2894870-2894889 Msa0391340:intron 40.0%
ATCACAATGGAGAACCTGAA+CGG - chr3_2:2894978-2894997 Msa0391340:intron 40.0%
ACAATATTTGCATCCCGTTC+AGG + chr3_2:2894995-2895014 None:intergenic 40.0%
CATATTGGGTTCCTTCAAAG+TGG + chr3_2:2895018-2895037 None:intergenic 40.0%
! CACTTTGAAGGAACCCAATA+TGG - chr3_2:2895016-2895035 Msa0391340:CDS 40.0%
AACCCAATATGGTCTTCTGA+AGG - chr3_2:2895027-2895046 Msa0391340:CDS 40.0%
CTCCTTCAGAAGACCATATT+GGG + chr3_2:2895032-2895051 None:intergenic 40.0%
TCTCCTTCAGAAGACCATAT+TGG + chr3_2:2895033-2895052 None:intergenic 40.0%
GCAACACTATGTCTTAGATC+TGG + chr3_2:2895139-2895158 None:intergenic 40.0%
AGACAGACACCAGATCTATT+TGG - chr3_2:2895182-2895201 Msa0391340:five_prime_UTR 40.0%
AAATAGATCCGGTGTCTTAG+AGG + chr3_2:2893071-2893090 None:intergenic 40.0%
! TCTAAGACACCGGATCTATT+TGG - chr3_2:2893070-2893089 Msa0391340:three_prime_UTR 40.0%
! TCCTTTCAAGTGCTACTACA+AGG - chr3_2:2893114-2893133 Msa0391340:three_prime_UTR 40.0%
ACCTTGTAGTAGCACTTGAA+AGG + chr3_2:2893118-2893137 None:intergenic 40.0%
GTAGTTGTCATGTGACTGAA+AGG - chr3_2:2893489-2893508 Msa0391340:intron 40.0%
TTACACAAGAGGTAGTTTCC+AGG + chr3_2:2893528-2893547 None:intergenic 40.0%
CTACCTCTTGTGTAAAACAC+AGG - chr3_2:2893533-2893552 Msa0391340:intron 40.0%
! TACCCTGTGTTTTACACAAG+AGG + chr3_2:2893539-2893558 None:intergenic 40.0%
CTTGTGTAAAACACAGGGTA+AGG - chr3_2:2893539-2893558 Msa0391340:intron 40.0%
! CCCTTTTAGTAGTAGTAGTC+TGG - chr3_2:2893638-2893657 Msa0391340:intron 40.0%
CTACACTAACAAGGATTGCA+GGG + chr3_2:2893668-2893687 None:intergenic 40.0%
ACTACACTAACAAGGATTGC+AGG + chr3_2:2893669-2893688 None:intergenic 40.0%
AAAAAGACAAAGGAAGTGGG+AGG + chr3_2:2893786-2893805 None:intergenic 40.0%
TTTGCTAGGTTTAATGACGC+GGG - chr3_2:2893911-2893930 Msa0391340:intron 40.0%
TTAGTGCAGCCCTTGAAATT+GGG + chr3_2:2894099-2894118 None:intergenic 40.0%
TTTAGTGCAGCCCTTGAAAT+TGG + chr3_2:2894100-2894119 None:intergenic 40.0%
GGAGCCAGGAATTAAAGTTT+GGG - chr3_2:2894195-2894214 Msa0391340:intron 40.0%
GAGCCAGGAATTAAAGTTTG+GGG - chr3_2:2894196-2894215 Msa0391340:intron 40.0%
AGCCAGGAATTAAAGTTTGG+GGG - chr3_2:2894197-2894216 Msa0391340:intron 40.0%
!! TATTTTAGGTGTGGGAGGTA+TGG - chr3_2:2894784-2894803 Msa0391340:intron 40.0%
! AGAAGGGTCTTTGAGAAATG+TGG - chr3_2:2894847-2894866 Msa0391340:intron 40.0%
! GTCTTTGAGAAATGTGGACA+AGG - chr3_2:2894853-2894872 Msa0391340:intron 40.0%
ACAAGGGATATCTCTCAATG+AGG - chr3_2:2894870-2894889 Msa0391340:intron 40.0%
ATCACAATGGAGAACCTGAA+CGG - chr3_2:2894978-2894997 Msa0391340:intron 40.0%
ACAATATTTGCATCCCGTTC+AGG + chr3_2:2894995-2895014 None:intergenic 40.0%
CATATTGGGTTCCTTCAAAG+TGG + chr3_2:2895018-2895037 None:intergenic 40.0%
! CACTTTGAAGGAACCCAATA+TGG - chr3_2:2895016-2895035 Msa0391340:CDS 40.0%
AACCCAATATGGTCTTCTGA+AGG - chr3_2:2895027-2895046 Msa0391340:CDS 40.0%
CTCCTTCAGAAGACCATATT+GGG + chr3_2:2895032-2895051 None:intergenic 40.0%
TCTCCTTCAGAAGACCATAT+TGG + chr3_2:2895033-2895052 None:intergenic 40.0%
GCAACACTATGTCTTAGATC+TGG + chr3_2:2895139-2895158 None:intergenic 40.0%
AGACAGACACCAGATCTATT+TGG - chr3_2:2895182-2895201 Msa0391340:five_prime_UTR 40.0%
TTAGAAGATGTGCACCAGTG+AGG + chr3_2:2893024-2893043 None:intergenic 45.0%
AAGACACCGGATCTATTTGG+TGG - chr3_2:2893073-2893092 Msa0391340:three_prime_UTR 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr3_2:2893495-2893514 Msa0391340:intron 45.0%
CTACTACTAAAAGGGCAACC+CGG + chr3_2:2893633-2893652 None:intergenic 45.0%
!!! TTTTTTGTAGCGTCTAGGCC+AGG + chr3_2:2894032-2894051 None:intergenic 45.0%
GGCCTAGACGCTACAAAAAA+AGG - chr3_2:2894032-2894051 Msa0391340:intron 45.0%
ACGGAAATCCCCCAATTTCA+AGG - chr3_2:2894086-2894105 Msa0391340:CDS 45.0%
CGGAAATCCCCCAATTTCAA+GGG - chr3_2:2894087-2894106 Msa0391340:CDS 45.0%
TAGTGCAGCCCTTGAAATTG+GGG + chr3_2:2894098-2894117 None:intergenic 45.0%
AAGGGCTGCACTAAAAAGCT+GGG - chr3_2:2894105-2894124 Msa0391340:CDS 45.0%
CGGAGCCAGGAATTAAAGTT+TGG - chr3_2:2894194-2894213 Msa0391340:intron 45.0%
GCCAGGAATTAAAGTTTGGG+GGG - chr3_2:2894198-2894217 Msa0391340:intron 45.0%
TCCCCCCAAACTTTAATTCC+TGG + chr3_2:2894202-2894221 None:intergenic 45.0%
CTAGCAAATTCACCCCTTGA+AGG + chr3_2:2894709-2894728 None:intergenic 45.0%
!! GGGGTGAATTTGCTAGAATC+TGG - chr3_2:2894713-2894732 Msa0391340:intron 45.0%
AGGGATATCTCTCAATGAGG+AGG - chr3_2:2894873-2894892 Msa0391340:intron 45.0%
!! ATGCATCGACTGAAATCCGA+AGG + chr3_2:2894907-2894926 None:intergenic 45.0%
TCACAATGGAGAACCTGAAC+GGG - chr3_2:2894979-2894998 Msa0391340:intron 45.0%
TGAAGGAGAATGTCCATCAG+AGG - chr3_2:2895044-2895063 Msa0391340:CDS 45.0%
GAAGGAGAATGTCCATCAGA+GGG - chr3_2:2895045-2895064 Msa0391340:CDS 45.0%
AGATCTGGTGTCTGTCTTAG+AGG + chr3_2:2895179-2895198 None:intergenic 45.0%
CAATCGCGACCAAATAGATC+TGG + chr3_2:2895194-2895213 None:intergenic 45.0%
CAGATCTATTTGGTCGCGAT+TGG - chr3_2:2895192-2895211 Msa0391340:five_prime_UTR 45.0%
TTAGAAGATGTGCACCAGTG+AGG + chr3_2:2893024-2893043 None:intergenic 45.0%
AAGACACCGGATCTATTTGG+TGG - chr3_2:2893073-2893092 Msa0391340:three_prime_UTR 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr3_2:2893495-2893514 Msa0391340:intron 45.0%
CTACTACTAAAAGGGCAACC+CGG + chr3_2:2893633-2893652 None:intergenic 45.0%
!!! TTTTTTGTAGCGTCTAGGCC+AGG + chr3_2:2894032-2894051 None:intergenic 45.0%
GGCCTAGACGCTACAAAAAA+AGG - chr3_2:2894032-2894051 Msa0391340:intron 45.0%
ACGGAAATCCCCCAATTTCA+AGG - chr3_2:2894086-2894105 Msa0391340:CDS 45.0%
CGGAAATCCCCCAATTTCAA+GGG - chr3_2:2894087-2894106 Msa0391340:CDS 45.0%
TAGTGCAGCCCTTGAAATTG+GGG + chr3_2:2894098-2894117 None:intergenic 45.0%
AAGGGCTGCACTAAAAAGCT+GGG - chr3_2:2894105-2894124 Msa0391340:CDS 45.0%
CGGAGCCAGGAATTAAAGTT+TGG - chr3_2:2894194-2894213 Msa0391340:intron 45.0%
GCCAGGAATTAAAGTTTGGG+GGG - chr3_2:2894198-2894217 Msa0391340:intron 45.0%
TCCCCCCAAACTTTAATTCC+TGG + chr3_2:2894202-2894221 None:intergenic 45.0%
CTAGCAAATTCACCCCTTGA+AGG + chr3_2:2894709-2894728 None:intergenic 45.0%
!! GGGGTGAATTTGCTAGAATC+TGG - chr3_2:2894713-2894732 Msa0391340:intron 45.0%
AGGGATATCTCTCAATGAGG+AGG - chr3_2:2894873-2894892 Msa0391340:intron 45.0%
!! ATGCATCGACTGAAATCCGA+AGG + chr3_2:2894907-2894926 None:intergenic 45.0%
TCACAATGGAGAACCTGAAC+GGG - chr3_2:2894979-2894998 Msa0391340:intron 45.0%
TGAAGGAGAATGTCCATCAG+AGG - chr3_2:2895044-2895063 Msa0391340:CDS 45.0%
GAAGGAGAATGTCCATCAGA+GGG - chr3_2:2895045-2895064 Msa0391340:CDS 45.0%
AGATCTGGTGTCTGTCTTAG+AGG + chr3_2:2895179-2895198 None:intergenic 45.0%
CAATCGCGACCAAATAGATC+TGG + chr3_2:2895194-2895213 None:intergenic 45.0%
CAGATCTATTTGGTCGCGAT+TGG - chr3_2:2895192-2895211 Msa0391340:five_prime_UTR 45.0%
TGAGGCAGACATGAGACATG+GGG + chr3_2:2893006-2893025 None:intergenic 50.0%
GTGAGGCAGACATGAGACAT+GGG + chr3_2:2893007-2893026 None:intergenic 50.0%
AGTGAGGCAGACATGAGACA+TGG + chr3_2:2893008-2893027 None:intergenic 50.0%
ATGTCTCATGTCTGCCTCAC+TGG - chr3_2:2893007-2893026 Msa0391340:three_prime_UTR 50.0%
!! ACGAGCTTCCTCTAAGACAC+CGG - chr3_2:2893060-2893079 Msa0391340:three_prime_UTR 50.0%
! ACACCGGATCTATTTGGTGG+CGG - chr3_2:2893076-2893095 Msa0391340:three_prime_UTR 50.0%
TCACCGCCACCAAATAGATC+CGG + chr3_2:2893082-2893101 None:intergenic 50.0%
AAAGGTCACGGTTCAAGTCC+TGG - chr3_2:2893507-2893526 Msa0391340:intron 50.0%
AGTGCAGCCCTTGAAATTGG+GGG + chr3_2:2894097-2894116 None:intergenic 50.0%
CAAGGGCTGCACTAAAAAGC+TGG - chr3_2:2894104-2894123 Msa0391340:CDS 50.0%
CTGGGAATTGCGTCTACCTT+AGG - chr3_2:2894123-2894142 Msa0391340:CDS 50.0%
!! TGCTTGAAGGCATTGCCGTT+AGG + chr3_2:2894170-2894189 None:intergenic 50.0%
TAACGGCAATGCCTTCAAGC+AGG - chr3_2:2894169-2894188 Msa0391340:intron 50.0%
AACGGCAATGCCTTCAAGCA+GGG - chr3_2:2894170-2894189 Msa0391340:intron 50.0%
!! GAAAATATTGGGGGGTACCG+TGG - chr3_2:2894650-2894669 Msa0391340:intron 50.0%
AATTCACCCCTTGAAGGCAG+TGG + chr3_2:2894703-2894722 None:intergenic 50.0%
TGAGGAGGTAGTGAAGCCTT+CGG - chr3_2:2894888-2894907 Msa0391340:intron 50.0%
TGAGGCAGACATGAGACATG+GGG + chr3_2:2893006-2893025 None:intergenic 50.0%
GTGAGGCAGACATGAGACAT+GGG + chr3_2:2893007-2893026 None:intergenic 50.0%
AGTGAGGCAGACATGAGACA+TGG + chr3_2:2893008-2893027 None:intergenic 50.0%
ATGTCTCATGTCTGCCTCAC+TGG - chr3_2:2893007-2893026 Msa0391340:three_prime_UTR 50.0%
!! ACGAGCTTCCTCTAAGACAC+CGG - chr3_2:2893060-2893079 Msa0391340:three_prime_UTR 50.0%
! ACACCGGATCTATTTGGTGG+CGG - chr3_2:2893076-2893095 Msa0391340:three_prime_UTR 50.0%
TCACCGCCACCAAATAGATC+CGG + chr3_2:2893082-2893101 None:intergenic 50.0%
AAAGGTCACGGTTCAAGTCC+TGG - chr3_2:2893507-2893526 Msa0391340:intron 50.0%
AGTGCAGCCCTTGAAATTGG+GGG + chr3_2:2894097-2894116 None:intergenic 50.0%
CAAGGGCTGCACTAAAAAGC+TGG - chr3_2:2894104-2894123 Msa0391340:CDS 50.0%
CTGGGAATTGCGTCTACCTT+AGG - chr3_2:2894123-2894142 Msa0391340:CDS 50.0%
!! TGCTTGAAGGCATTGCCGTT+AGG + chr3_2:2894170-2894189 None:intergenic 50.0%
TAACGGCAATGCCTTCAAGC+AGG - chr3_2:2894169-2894188 Msa0391340:intron 50.0%
AACGGCAATGCCTTCAAGCA+GGG - chr3_2:2894170-2894189 Msa0391340:intron 50.0%
!! GAAAATATTGGGGGGTACCG+TGG - chr3_2:2894650-2894669 Msa0391340:intron 50.0%
AATTCACCCCTTGAAGGCAG+TGG + chr3_2:2894703-2894722 None:intergenic 50.0%
TGAGGAGGTAGTGAAGCCTT+CGG - chr3_2:2894888-2894907 Msa0391340:intron 50.0%
GGAAGGGGTCCCACCATTAT+TGG + chr3_2:2893579-2893598 None:intergenic 55.0%
! ATAATGGTGGGACCCCTTCC+CGG - chr3_2:2893579-2893598 Msa0391340:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr3_2:2893606-2893625 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr3_2:2893607-2893626 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr3_2:2893611-2893630 Msa0391340:intron 55.0%
!! GTTGAGGCGCTGCAATTGTG+GGG + chr3_2:2893991-2894010 None:intergenic 55.0%
!! GGTTGAGGCGCTGCAATTGT+GGG + chr3_2:2893992-2894011 None:intergenic 55.0%
CAGGATCATCATGCTCGTGG+GGG + chr3_2:2894013-2894032 None:intergenic 55.0%
CCAGGATCATCATGCTCGTG+GGG + chr3_2:2894014-2894033 None:intergenic 55.0%
GCCAGGATCATCATGCTCGT+GGG + chr3_2:2894015-2894034 None:intergenic 55.0%
ACGGCAATGCCTTCAAGCAG+GGG - chr3_2:2894171-2894190 Msa0391340:intron 55.0%
CAGTGACGCTATCCCTCTGA+TGG + chr3_2:2895060-2895079 None:intergenic 55.0%
CATCAGAGGGATAGCGTCAC+TGG - chr3_2:2895058-2895077 Msa0391340:CDS 55.0%
GTGCCTAATGTCTGCCTCAC+TGG - chr3_2:2895080-2895099 Msa0391340:CDS 55.0%
GCACCAGTGAGGCAGACATT+AGG + chr3_2:2895086-2895105 None:intergenic 55.0%
GTGGAAGATGTGCACCAGTG+AGG + chr3_2:2895097-2895116 None:intergenic 55.0%
GGAAGGGGTCCCACCATTAT+TGG + chr3_2:2893579-2893598 None:intergenic 55.0%
! ATAATGGTGGGACCCCTTCC+CGG - chr3_2:2893579-2893598 Msa0391340:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr3_2:2893606-2893625 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr3_2:2893607-2893626 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr3_2:2893611-2893630 Msa0391340:intron 55.0%
!! GTTGAGGCGCTGCAATTGTG+GGG + chr3_2:2893991-2894010 None:intergenic 55.0%
!! GGTTGAGGCGCTGCAATTGT+GGG + chr3_2:2893992-2894011 None:intergenic 55.0%
CAGGATCATCATGCTCGTGG+GGG + chr3_2:2894013-2894032 None:intergenic 55.0%
CCAGGATCATCATGCTCGTG+GGG + chr3_2:2894014-2894033 None:intergenic 55.0%
GCCAGGATCATCATGCTCGT+GGG + chr3_2:2894015-2894034 None:intergenic 55.0%
ACGGCAATGCCTTCAAGCAG+GGG - chr3_2:2894171-2894190 Msa0391340:intron 55.0%
CAGTGACGCTATCCCTCTGA+TGG + chr3_2:2895060-2895079 None:intergenic 55.0%
CATCAGAGGGATAGCGTCAC+TGG - chr3_2:2895058-2895077 Msa0391340:CDS 55.0%
GTGCCTAATGTCTGCCTCAC+TGG - chr3_2:2895080-2895099 Msa0391340:CDS 55.0%
GCACCAGTGAGGCAGACATT+AGG + chr3_2:2895086-2895105 None:intergenic 55.0%
GTGGAAGATGTGCACCAGTG+AGG + chr3_2:2895097-2895116 None:intergenic 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr3_2:2893612-2893631 Msa0391340:intron 60.0%
!! GGGTTGAGGCGCTGCAATTG+TGG + chr3_2:2893993-2894012 None:intergenic 60.0%
CATCATGCTCGTGGGGGTTG+AGG + chr3_2:2894007-2894026 None:intergenic 60.0%
CCCCACGAGCATGATGATCC+TGG - chr3_2:2894011-2894030 Msa0391340:intron 60.0%
GGCCAGGATCATCATGCTCG+TGG + chr3_2:2894016-2894035 None:intergenic 60.0%
GCAATGCCTTCAAGCAGGGG+CGG - chr3_2:2894174-2894193 Msa0391340:intron 60.0%
TCACCCCTTGAAGGCAGTGG+CGG + chr3_2:2894700-2894719 None:intergenic 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr3_2:2893612-2893631 Msa0391340:intron 60.0%
!! GGGTTGAGGCGCTGCAATTG+TGG + chr3_2:2893993-2894012 None:intergenic 60.0%
CATCATGCTCGTGGGGGTTG+AGG + chr3_2:2894007-2894026 None:intergenic 60.0%
CCCCACGAGCATGATGATCC+TGG - chr3_2:2894011-2894030 Msa0391340:intron 60.0%
GGCCAGGATCATCATGCTCG+TGG + chr3_2:2894016-2894035 None:intergenic 60.0%
GCAATGCCTTCAAGCAGGGG+CGG - chr3_2:2894174-2894193 Msa0391340:intron 60.0%
TCACCCCTTGAAGGCAGTGG+CGG + chr3_2:2894700-2894719 None:intergenic 60.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3_2:2893594-2893613 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3_2:2893595-2893614 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3_2:2893594-2893613 Msa0391340:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3_2:2893595-2893614 Msa0391340:intron 65.0%
! AGGCAGTGGCGGAGCCACTA+GGG + chr3_2:2894689-2894708 None:intergenic 65.0%
! AAGGCAGTGGCGGAGCCACT+AGG + chr3_2:2894690-2894709 None:intergenic 65.0%
TGGCTCCGCCACTGCCTTCA+AGG - chr3_2:2894692-2894711 Msa0391340:intron 65.0%
GGCTCCGCCACTGCCTTCAA+GGG - chr3_2:2894693-2894712 Msa0391340:intron 65.0%
GCTCCGCCACTGCCTTCAAG+GGG - chr3_2:2894694-2894713 Msa0391340:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3_2:2893594-2893613 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3_2:2893595-2893614 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3_2:2893594-2893613 Msa0391340:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3_2:2893595-2893614 Msa0391340:intron 65.0%
! AGGCAGTGGCGGAGCCACTA+GGG + chr3_2:2894689-2894708 None:intergenic 65.0%
! AAGGCAGTGGCGGAGCCACT+AGG + chr3_2:2894690-2894709 None:intergenic 65.0%
TGGCTCCGCCACTGCCTTCA+AGG - chr3_2:2894692-2894711 Msa0391340:intron 65.0%
GGCTCCGCCACTGCCTTCAA+GGG - chr3_2:2894693-2894712 Msa0391340:intron 65.0%
GCTCCGCCACTGCCTTCAAG+GGG - chr3_2:2894694-2894713 Msa0391340:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3_2:2893596-2893615 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3_2:2893600-2893619 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3_2:2893601-2893620 None:intergenic 70.0%
CTGGCTCCGCCCCTGCTTGA+AGG + chr3_2:2894183-2894202 None:intergenic 70.0%
CTTCAAGCAGGGGCGGAGCC+AGG - chr3_2:2894181-2894200 Msa0391340:intron 70.0%
GAGCCACTAGGGGGGCCAAG+GGG + chr3_2:2894678-2894697 None:intergenic 70.0%
GGAGCCACTAGGGGGGCCAA+GGG + chr3_2:2894679-2894698 None:intergenic 70.0%
! CAGTGGCGGAGCCACTAGGG+GGG + chr3_2:2894686-2894705 None:intergenic 70.0%
! GCAGTGGCGGAGCCACTAGG+GGG + chr3_2:2894687-2894706 None:intergenic 70.0%
! GGCAGTGGCGGAGCCACTAG+GGG + chr3_2:2894688-2894707 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3_2:2893596-2893615 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3_2:2893600-2893619 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3_2:2893601-2893620 None:intergenic 70.0%
CTGGCTCCGCCCCTGCTTGA+AGG + chr3_2:2894183-2894202 None:intergenic 70.0%
CTTCAAGCAGGGGCGGAGCC+AGG - chr3_2:2894181-2894200 Msa0391340:intron 70.0%
GAGCCACTAGGGGGGCCAAG+GGG + chr3_2:2894678-2894697 None:intergenic 70.0%
GGAGCCACTAGGGGGGCCAA+GGG + chr3_2:2894679-2894698 None:intergenic 70.0%
! CAGTGGCGGAGCCACTAGGG+GGG + chr3_2:2894686-2894705 None:intergenic 70.0%
! GCAGTGGCGGAGCCACTAGG+GGG + chr3_2:2894687-2894706 None:intergenic 70.0%
! GGCAGTGGCGGAGCCACTAG+GGG + chr3_2:2894688-2894707 None:intergenic 70.0%
!! GGGGGTACCGTGGCACCCCT+TGG - chr3_2:2894660-2894679 Msa0391340:intron 75.0%
!! AGGGGGGCCAAGGGGTGCCA+CGG + chr3_2:2894670-2894689 None:intergenic 75.0%
GCACCCCTTGGCCCCCCTAG+TGG - chr3_2:2894672-2894691 Msa0391340:intron 75.0%
CGGAGCCACTAGGGGGGCCA+AGG + chr3_2:2894680-2894699 None:intergenic 75.0%
!! GGGGGTACCGTGGCACCCCT+TGG - chr3_2:2894660-2894679 Msa0391340:intron 75.0%
!! AGGGGGGCCAAGGGGTGCCA+CGG + chr3_2:2894670-2894689 None:intergenic 75.0%
GCACCCCTTGGCCCCCCTAG+TGG - chr3_2:2894672-2894691 Msa0391340:intron 75.0%
CGGAGCCACTAGGGGGGCCA+AGG + chr3_2:2894680-2894699 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 2892883 2895240 2892883 ID=Msa0391340;Name=Msa0391340
chr3_2 mRNA 2892883 2895240 2892883 ID=Msa0391340-mRNA-1;Parent=Msa0391340;Name=Msa0391340-mRNA-1;_AED=0.23;_eAED=0.23;_QI=124|0.5|0.66|1|0.5|0.66|3|342|104
chr3_2 exon 2892883 2893331 2892883 ID=Msa0391340-mRNA-1:exon:954;Parent=Msa0391340-mRNA-1
chr3_2 exon 2894070 2894148 2894070 ID=Msa0391340-mRNA-1:exon:953;Parent=Msa0391340-mRNA-1
chr3_2 exon 2894988 2895240 2894988 ID=Msa0391340-mRNA-1:exon:952;Parent=Msa0391340-mRNA-1
chr3_2 five_prime_UTR 2895117 2895240 2895117 ID=Msa0391340-mRNA-1:five_prime_utr;Parent=Msa0391340-mRNA-1
chr3_2 CDS 2894988 2895116 2894988 ID=Msa0391340-mRNA-1:cds;Parent=Msa0391340-mRNA-1
chr3_2 CDS 2894070 2894148 2894070 ID=Msa0391340-mRNA-1:cds;Parent=Msa0391340-mRNA-1
chr3_2 CDS 2893225 2893331 2893225 ID=Msa0391340-mRNA-1:cds;Parent=Msa0391340-mRNA-1
chr3_2 three_prime_UTR 2892883 2893224 2892883 ID=Msa0391340-mRNA-1:three_prime_utr;Parent=Msa0391340-mRNA-1
Gene Sequence

>Msa0391340

ATGTCTCATGTCTGCCTCACTGGTGCACATCTTCTAAGAGCTGCAATATGGACACGAGCTTCCTCTAAGACACCGGATCTATTTGGTGGCGGTGACAGCTTTGCTTTTCCTTTCAAGTGCTACTACAAGCAGCAAAAAGAATCCCCACAATTGCAGCGCCTCAACCCCCACGAGCATGATGATCCTGGCCTAGACGCTACAAAAAAAGGTGTGGGAGGTATGGTCACAATCTTTGATGCTTGCAGTCAAAAGCTTGATGTAACAGAAGGGTCTTTGAGAAATGTGGACAAGGGATATCTCTCAATGAGGAGGTAG
Protein sequence

>Msa0391340

MSHVCLTGAHLLRAAIWTRASSKTPDLFGGGDSFAFPFKCYYKQQKESPQLQRLNPHEHDDPGLDATKKGVGGMVTIFDACSQKLDVTEGSLRNVDKGYLSMRR*