AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896920 MtrunA17_Chr6g0482081 77.023 383 47 6 13 354 76 458 0.0 556
Msa0896920 MtrunA17_Chr6g0482131 68.930 383 77 5 13 354 76 457 0.0 533
Msa0896920 MtrunA17_Chr6g0482071 64.491 383 94 5 13 354 77 458 1.07e-170 485
Msa0896920 MtrunA17_Chr2g0329201 58.684 380 115 5 16 354 74 452 2.77e-155 446
Msa0896920 MtrunA17_Chr4g0033191 57.895 380 118 4 16 354 86 464 6.22e-155 446
Msa0896920 MtrunA17_Chr4g0033201 57.632 380 119 4 16 354 79 457 2.86e-154 443
Msa0896920 MtrunA17_Chr3g0088441 58.947 380 114 7 16 354 81 459 3.29e-154 444
Msa0896920 MtrunA17_Chr2g0329191 58.421 380 115 6 16 354 77 454 3.84e-154 443
Msa0896920 MtrunA17_Chr4g0033331 57.937 378 117 4 17 353 83 459 1.51e-153 442
Msa0896920 MtrunA17_Chr4g0033311 57.895 380 118 5 16 354 82 460 2.64e-151 436
Msa0896920 MtrunA17_Chr4g0033401 57.520 379 119 4 17 354 78 455 2.83e-151 436
Msa0896920 MtrunA17_Chr4g0033271 58.158 380 117 5 16 354 78 456 5.15e-151 435
Msa0896920 MtrunA17_Chr4g0033321 57.256 379 120 4 17 354 77 454 5.24e-150 432
Msa0896920 MtrunA17_Chr4g0033341 55.906 381 122 5 16 354 112 488 1.87e-147 427
Msa0896920 MtrunA17_Chr4g0033261 54.593 381 105 7 16 354 84 438 4.29e-133 389
Msa0896920 MtrunA17_Chr4g0033231 54.331 381 106 7 16 354 84 438 1.80e-132 387
Msa0896920 MtrunA17_Chr2g0329321 53.684 380 108 7 16 354 81 433 7.21e-132 385
Msa0896920 MtrunA17_Chr4g0010501 51.047 382 139 7 13 353 64 438 3.39e-124 366
Msa0896920 MtrunA17_Chr5g0430451 51.414 389 112 6 16 354 82 443 4.07e-120 356
Msa0896920 MtrunA17_Chr3g0087261 47.244 381 153 7 16 354 80 454 4.13e-115 343
Msa0896920 MtrunA17_Chr4g0006111 45.758 389 134 9 17 354 108 470 7.16e-106 320
Msa0896920 MtrunA17_Chr3g0087271 45.526 380 161 6 16 354 81 455 1.17e-100 306
Msa0896920 MtrunA17_Chr4g0006131 43.782 386 142 7 18 354 86 445 9.24e-100 304
Msa0896920 MtrunA17_Chr4g0042171 45.526 380 163 6 17 354 67 444 2.56e-99 303
Msa0896920 MtrunA17_Chr4g0043091 44.094 381 167 9 17 354 71 448 1.86e-96 295
Msa0896920 MtrunA17_Chr6g0482941 42.706 377 169 8 18 353 87 457 5.00e-95 292
Msa0896920 MtrunA17_Chr6g0482951 43.501 377 166 9 18 353 87 457 6.55e-95 291
Msa0896920 MtrunA17_Chr2g0301231 44.628 363 126 10 41 354 1 337 7.69e-90 275
Msa0896920 MtrunA17_Chr4g0074561 42.105 380 176 8 18 354 80 458 2.45e-89 278
Msa0896920 MtrunA17_Chr4g0074551 40.584 377 180 7 20 354 96 470 5.68e-87 273
Msa0896920 MtrunA17_Chr2g0288071 41.207 381 180 8 16 354 110 488 4.63e-85 267
Msa0896920 MtrunA17_Chr3g0090131 41.995 381 163 10 17 354 64 429 3.91e-84 263
Msa0896920 MtrunA17_Chr2g0288021 39.737 380 183 8 18 354 79 455 1.04e-82 260
Msa0896920 MtrunA17_Chr3g0090111 40.476 378 172 8 17 354 62 426 6.66e-82 257
Msa0896920 MtrunA17_Chr5g0418871 46.071 280 110 4 13 253 22 299 5.02e-78 243
Msa0896920 MtrunA17_Chr2g0317841 36.508 378 197 6 18 354 76 451 3.51e-77 246
Msa0896920 MtrunA17_Chr2g0317821 36.772 378 196 6 18 354 76 451 1.60e-76 244
Msa0896920 MtrunA17_Chr7g0242681 36.842 380 178 8 19 353 83 445 8.49e-74 238
Msa0896920 MtrunA17_Chr7g0242691 36.533 375 184 8 21 354 78 439 3.53e-71 230
Msa0896920 MtrunA17_Chr4g0006971 39.623 318 141 6 21 291 74 387 1.29e-69 226
Msa0896920 MtrunA17_Chr3g0087201 43.728 279 110 6 117 354 17 289 4.10e-68 217
Msa0896920 MtrunA17_Chr7g0230651 36.685 368 175 11 28 354 26 376 2.14e-66 214
Msa0896920 MtrunA17_Chr5g0428831 36.314 369 176 10 22 346 73 426 3.79e-66 217
Msa0896920 MtrunA17_Chr1g0195611 36.389 360 169 7 22 334 73 419 1.32e-65 216
Msa0896920 MtrunA17_Chr1g0195641 54.696 181 79 2 22 201 73 251 1.50e-64 210
Msa0896920 MtrunA17_Chr7g0234091 34.343 396 204 11 1 353 95 477 1.37e-58 198
Msa0896920 MtrunA17_Chr7g0234131 35.101 396 202 10 1 353 95 478 4.34e-58 196
Msa0896920 MtrunA17_Chr7g0234111 34.511 368 186 9 28 353 123 477 4.22e-57 194
Msa0896920 MtrunA17_Chr3g0087191 74.257 101 26 0 16 116 65 165 4.45e-52 170
Msa0896920 MtrunA17_Chr7g0227561 36.932 176 76 4 28 202 101 242 8.54e-33 124
Msa0896920 MtrunA17_Chr7g0236731 35.743 249 113 6 62 270 28 269 4.65e-31 119
Msa0896920 MtrunA17_Chr4g0068871 23.102 303 193 9 37 324 183 460 1.34e-14 75.1
Msa0896920 MtrunA17_Chr2g0288031 46.667 60 31 1 125 184 4 62 3.57e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896920 AT5G44640.1 49.474 380 144 6 16 353 74 447 6.06e-122 361
Msa0896920 AT5G42260.1 50.000 380 142 6 16 353 74 447 1.19e-121 360
Msa0896920 AT2G44450.1 48.285 379 149 6 16 353 74 446 1.12e-118 353
Msa0896920 AT3G60130.1 48.947 380 146 7 16 353 73 446 9.44e-117 348
Msa0896920 AT2G44480.1 46.438 379 160 6 16 353 78 454 1.72e-111 335
Msa0896920 AT2G44480.3 46.438 379 160 6 16 353 109 485 3.72e-111 335
Msa0896920 AT3G60130.2 48.199 361 139 7 35 353 40 394 5.93e-110 329
Msa0896920 AT2G25630.1 45.526 380 142 7 16 353 73 429 1.60e-104 316
Msa0896920 AT2G44480.2 45.763 354 149 6 41 353 1 352 7.82e-102 306
Msa0896920 AT1G47600.1 44.619 381 160 8 16 354 85 456 1.23e-101 309
Msa0896920 AT3G60130.3 45.983 361 136 8 35 353 40 383 1.38e-100 305
Msa0896920 AT5G24550.1 42.400 375 171 7 23 353 81 454 1.68e-100 307
Msa0896920 AT5G54570.3 44.211 380 168 6 17 354 74 451 2.12e-100 304
Msa0896920 AT1G47600.2 44.094 381 161 8 16 354 85 455 2.49e-100 306
Msa0896920 AT1G51470.1 44.619 381 160 8 16 354 85 456 4.58e-100 305
Msa0896920 AT5G54570.1 44.211 380 168 6 17 354 74 451 3.41e-99 303
Msa0896920 AT3G60140.1 43.048 374 169 7 23 353 75 447 1.39e-98 303
Msa0896920 AT1G26560.1 44.474 380 167 7 17 354 75 452 2.55e-98 301
Msa0896920 AT5G24540.2 43.733 375 166 7 23 353 81 454 6.84e-98 298
Msa0896920 AT5G24540.1 43.733 375 166 7 23 353 81 454 1.05e-96 297
Msa0896920 AT5G25980.3 41.910 377 173 8 20 354 95 467 7.98e-96 293
Msa0896920 AT5G25980.1 41.910 377 173 8 20 354 95 467 7.98e-96 293
Msa0896920 AT5G25980.2 41.910 377 173 8 20 354 95 467 8.13e-95 293
Msa0896920 AT3G18080.1 42.820 383 173 7 11 352 76 453 3.08e-94 290
Msa0896920 AT2G44460.1 42.513 374 172 6 22 353 77 449 3.03e-93 290
Msa0896920 AT2G44470.1 40.267 375 180 6 22 353 77 450 5.57e-93 285
Msa0896920 AT3G60120.1 42.133 375 174 7 22 354 62 435 9.27e-93 287
Msa0896920 AT5G26000.2 43.342 383 160 10 20 354 83 456 5.06e-92 283
Msa0896920 AT2G44470.3 40.267 375 180 6 22 353 77 450 3.04e-91 285
Msa0896920 AT3G60140.2 43.059 353 155 8 23 332 75 424 5.63e-91 280
Msa0896920 AT5G26000.1 42.744 379 168 8 20 354 83 456 8.67e-91 282
Msa0896920 AT5G54570.2 43.820 356 156 6 41 354 1 354 5.36e-90 277
Msa0896920 AT3G18070.3 40.769 390 165 10 11 353 67 437 1.36e-87 273
Msa0896920 AT3G18070.1 40.769 390 171 10 11 353 67 443 5.28e-87 271
Msa0896920 AT2G32860.1 39.844 384 186 8 14 354 135 516 8.60e-87 274
Msa0896920 AT2G32860.2 39.687 383 185 8 16 354 137 517 4.80e-86 272
Msa0896920 AT2G44490.1 38.442 385 184 6 17 353 58 437 1.53e-84 266
Msa0896920 AT2G44480.4 54.077 233 88 4 16 241 109 329 4.58e-83 258
Msa0896920 AT3G09260.1 38.606 373 186 6 23 353 84 455 8.61e-83 261
Msa0896920 AT1G75940.1 39.474 380 178 8 23 353 86 462 1.07e-82 261
Msa0896920 AT3G21370.1 38.889 378 181 8 23 353 82 456 1.25e-81 258
Msa0896920 AT3G03640.1 39.467 375 182 8 23 353 84 457 1.27e-81 258
Msa0896920 AT5G36890.2 40.625 384 174 8 13 354 55 426 8.90e-81 254
Msa0896920 AT5G36890.1 40.625 384 174 8 13 354 55 426 9.52e-81 254
Msa0896920 AT1G66280.1 39.785 372 182 6 23 353 85 455 1.06e-79 253
Msa0896920 AT1G66270.1 39.516 372 183 6 23 353 85 455 4.58e-79 251
Msa0896920 AT1G02850.1 41.194 335 163 7 24 341 74 391 9.90e-79 249
Msa0896920 AT2G44450.2 43.854 301 122 6 94 353 1 295 2.92e-78 244
Msa0896920 AT1G52400.2 39.096 376 181 10 23 353 88 460 7.03e-78 246
Msa0896920 AT4G21760.2 36.856 388 194 9 10 354 90 469 1.25e-77 248
Msa0896920 AT1G51490.1 43.226 310 130 6 16 287 60 361 2.01e-77 244
Msa0896920 AT1G52400.3 39.096 376 181 10 23 353 88 460 3.78e-77 246
Msa0896920 AT1G52400.1 39.096 376 181 10 23 353 88 460 3.78e-77 246
Msa0896920 AT5G28510.1 37.203 379 188 7 23 353 88 464 1.03e-76 245
Msa0896920 AT2G44470.2 41.608 286 126 4 23 268 78 362 2.69e-76 240
Msa0896920 AT1G66270.2 39.247 372 182 7 23 353 85 453 5.82e-76 243
Msa0896920 AT1G61820.1 38.058 381 191 8 17 354 74 452 1.49e-75 242
Msa0896920 AT1G61810.1 37.795 381 192 8 17 354 77 455 2.63e-74 239
Msa0896920 AT1G61810.3 37.795 381 192 8 17 354 77 455 3.15e-74 239
Msa0896920 AT1G02850.2 39.227 362 159 10 24 341 74 418 3.42e-74 238
Msa0896920 AT4G27830.1 39.200 375 170 10 23 354 71 430 8.85e-74 237
Msa0896920 AT4G21760.1 35.825 388 188 10 10 354 90 459 1.97e-70 229
Msa0896920 AT4G27820.1 37.173 382 175 10 20 354 65 428 6.55e-70 227
Msa0896920 AT1G02850.3 57.542 179 74 1 24 202 74 250 1.94e-69 224
Msa0896920 AT1G02850.5 57.542 179 74 1 24 202 74 250 9.78e-69 224
Msa0896920 AT1G02850.4 57.542 179 74 1 24 202 74 250 9.90e-69 224
Msa0896920 AT1G61810.4 38.261 345 168 8 17 318 77 419 1.43e-67 219
Msa0896920 AT4G22100.1 36.842 380 182 11 19 354 63 428 2.43e-65 215
Msa0896920 AT3G18070.4 39.935 308 129 8 11 273 67 363 3.77e-65 211
Msa0896920 AT1G61810.5 37.288 354 177 8 44 354 4 355 7.53e-65 211
Msa0896920 AT1G60090.2 53.552 183 82 2 19 201 65 244 1.28e-64 213
Msa0896920 AT1G60090.1 53.552 183 82 2 19 201 65 244 1.68e-64 213
Msa0896920 AT4G27830.2 37.815 357 164 10 41 354 1 342 2.10e-64 210
Msa0896920 AT5G48375.1 36.782 348 138 10 20 318 74 388 7.73e-64 209
Msa0896920 AT1G61810.2 52.432 185 86 2 17 201 77 259 2.94e-63 204
Msa0896920 AT1G45191.2 36.702 376 180 12 23 354 74 435 9.21e-62 206
Msa0896920 AT1G45191.4 36.436 376 175 11 23 354 74 429 1.12e-61 206
Msa0896920 AT1G45191.6 36.508 378 183 12 23 354 74 440 2.54e-61 205
Msa0896920 AT1G60270.1 53.297 182 82 2 20 201 67 245 2.96e-61 201
Msa0896920 AT3G62750.4 36.096 374 177 11 22 354 93 445 3.17e-61 203
Msa0896920 AT1G45191.1 36.508 378 183 12 23 354 86 452 4.61e-61 204
Msa0896920 AT3G62750.1 36.096 374 177 11 22 354 67 419 4.90e-61 204
Msa0896920 AT3G62750.2 36.096 374 177 11 22 354 93 445 7.50e-61 204
Msa0896920 AT4G27820.2 36.011 361 166 10 41 354 1 343 4.94e-60 199
Msa0896920 AT4G27820.3 36.011 361 166 10 41 354 1 343 4.94e-60 199
Msa0896920 AT1G45191.5 38.361 305 141 8 19 281 70 369 6.59e-60 198
Msa0896920 AT3G62740.2 35.200 375 179 12 23 353 69 423 1.13e-59 198
Msa0896920 AT3G62740.1 35.200 375 179 12 23 353 69 423 7.05e-59 198
Msa0896920 AT1G45191.3 39.384 292 130 8 19 268 70 356 1.59e-58 195
Msa0896920 AT2G44460.2 39.474 304 141 6 92 353 1 303 2.16e-58 195
Msa0896920 AT3G62750.7 39.927 273 114 7 22 255 67 328 6.17e-56 187
Msa0896920 AT3G62750.8 39.927 273 114 7 22 255 67 328 6.17e-56 187
Msa0896920 AT3G62750.3 39.927 273 114 7 22 255 93 354 3.59e-55 187
Msa0896920 AT1G60270.2 53.459 159 71 2 43 201 3 158 1.16e-51 173
Msa0896920 AT3G62750.6 34.085 355 172 11 41 354 1 334 2.86e-50 173
Msa0896920 AT3G62750.5 34.085 355 172 11 41 354 1 334 2.86e-50 173
Msa0896920 AT3G18070.2 38.267 277 115 8 124 353 99 366 3.56e-46 162
Msa0896920 AT1G61820.3 33.762 311 162 7 87 354 4 313 1.68e-45 160
Msa0896920 AT2G44480.5 37.349 249 113 6 146 353 2 248 4.76e-41 146
Msa0896920 AT3G18070.7 36.882 263 110 8 138 353 1 254 6.21e-39 140
Msa0896920 AT3G18070.5 37.295 244 99 7 124 320 99 335 6.82e-38 139
Msa0896920 AT3G18070.6 35.652 230 94 7 138 320 1 223 7.41e-31 117
Msa0896920 AT3G06510.1 24.852 338 193 13 36 353 159 455 2.26e-17 84.0
Msa0896920 AT5G16580.1 30.986 284 127 12 119 354 27 289 2.95e-17 81.6
Msa0896920 AT3G06510.2 25.281 356 203 16 36 353 159 489 1.01e-16 82.0

Find 77 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGATACTTTGAGAATTT+TGG 0.091333 6_1:+88136667 None:intergenic
GAGCTTTGCTTTAAAGAATT+TGG 0.146112 6_1:-88138592 Msa0896920:CDS
TTTCTTACTTGGAAGTATTC+TGG 0.217868 6_1:+88139301 None:intergenic
AATCCATTTATGACTGAAAA+TGG 0.268179 6_1:-88135778 Msa0896920:intron
GAGGAAGGTCCCAATGAAAA+AGG 0.268527 6_1:+88138775 None:intergenic
TGATTATGAGTCACTATATA+GGG 0.301091 6_1:+88138430 None:intergenic
AAGAATGTATTGCAGGTATA+TGG 0.303911 6_1:-88136749 Msa0896920:intron
GATGTGAGTTACACTATATT+TGG 0.308617 6_1:+88138717 None:intergenic
TGATGAATACCATCGTTATA+AGG 0.309617 6_1:-88139506 Msa0896920:intron
GCCAAGCATGCTTATGTTGA+TGG 0.330838 6_1:-88138523 Msa0896920:CDS
AAGTGCATCTGTGTTGTAAC+TGG 0.331561 6_1:+88136550 None:intergenic
AGCTTAGTGGAGGTGTAAAT+AGG 0.332322 6_1:-88138950 Msa0896920:CDS
TTACACATGCAGGCTGCTTC+AGG 0.335032 6_1:-88135865 Msa0896920:intron
TTGATTATGAGTCACTATAT+AGG 0.356386 6_1:+88138429 None:intergenic
TGTCTACAAAACTAAGTATC+AGG 0.359104 6_1:-88138380 Msa0896920:intron
TTGGTGATAGAGTAAAGAAT+TGG 0.378652 6_1:-88138573 Msa0896920:CDS
CAATCCTTTGTGTATCTTCA+AGG 0.390282 6_1:+88135545 None:intergenic
GATGATCAAGGACATCAATA+TGG 0.390761 6_1:-88139351 Msa0896920:CDS
GCACATACCGTTGGGCCAAT+AGG 0.395361 6_1:+88136302 None:intergenic
GCTTAGTGGAGGTGTAAATA+GGG 0.402721 6_1:-88138949 Msa0896920:CDS
GGGTGCATTAGTTGCATAAT+GGG 0.404463 6_1:+88136595 None:intergenic
TTCTTCATATATTCAATGTC+CGG 0.405124 6_1:-88139604 None:intergenic
TCACTTGAAGATGAATATAA+TGG 0.411889 6_1:-88138750 Msa0896920:CDS
CAACCTCATCAATGAGTTGC+TGG 0.414002 6_1:-88138907 Msa0896920:CDS
CGGGTGCATTAGTTGCATAA+TGG 0.417931 6_1:+88136594 None:intergenic
AAACTTGTCAGATAAAATAA+AGG 0.429402 6_1:-88139554 Msa0896920:CDS
CTTGATGACTTCACTTAACT+CGG 0.433550 6_1:+88136574 None:intergenic
TATATGGATCCATTGACAAT+TGG 0.458276 6_1:-88136733 Msa0896920:CDS
CAGCGCAATGGAATACCTAT+TGG 0.459924 6_1:-88136317 Msa0896920:CDS
AACAAGTCGTGAATACCCTT+TGG 0.465827 6_1:+88135826 None:intergenic
AAAATAAAGGACAGAAGTAA+TGG 0.467864 6_1:-88139541 Msa0896920:CDS
TGCCAGGACGAACATCGTCC+AGG 0.472398 6_1:+88138490 None:intergenic
CACCTGGACGATGTTCGTCC+TGG 0.480398 6_1:-88138492 Msa0896920:CDS
TGGTAATCGACTCCCTACTA+AGG 0.483794 6_1:+88136687 None:intergenic
ATTGCAGAAGGAAAGCTTAG+TGG 0.495347 6_1:-88138963 Msa0896920:intron
AATCCTTTGTGTATCTTCAA+GGG 0.500154 6_1:+88135546 None:intergenic
TCCATCAACATAAGCATGCT+TGG 0.501327 6_1:+88138522 None:intergenic
TATCAAGCAAAGCTTGTAAG+AGG 0.501813 6_1:-88136652 Msa0896920:CDS
GGATAGTCTCCAATTGTCAA+TGG 0.507092 6_1:+88136724 None:intergenic
ACTAAGGATCTCATGGAGCT+TGG 0.509919 6_1:+88136703 None:intergenic
AATGTGATGGTGCTTTGAAC+CGG 0.510598 6_1:+88139585 None:intergenic
GTTGATGGAAGCTTCGCACC+TGG 0.514214 6_1:-88138508 Msa0896920:CDS
TGGTTATCAATTTATCCAAA+GGG 0.514428 6_1:-88135841 Msa0896920:CDS
GGCTTTCTCAAGAGGGAGTG+TGG 0.521857 6_1:+88135567 None:intergenic
AGCTCCATGAGATCCTTAGT+AGG 0.526973 6_1:-88136700 Msa0896920:CDS
ATGGTTATCAATTTATCCAA+AGG 0.532166 6_1:-88135842 Msa0896920:CDS
ACTCCCTACTAAGGATCTCA+TGG 0.543783 6_1:+88136696 None:intergenic
ATCAATGAGTTGCTGGCCAA+AGG 0.554170 6_1:-88138900 Msa0896920:intron
CATCTTCAAGTGACTGAGGA+AGG 0.557265 6_1:+88138760 None:intergenic
GCATGCTTGGCGAAGGCCCA+TGG 0.558759 6_1:+88138535 None:intergenic
AAGTATTCTGGACCAAGAGA+TGG 0.559511 6_1:+88139313 None:intergenic
CAATAGGTATTCCATTGCGC+TGG 0.561868 6_1:+88136318 None:intergenic
AACATAAGCATGCTTGGCGA+AGG 0.562738 6_1:+88138528 None:intergenic
TGGCAAAACTTGAATTGCAC+CGG 0.571841 6_1:-88138472 Msa0896920:CDS
CTTCAAGGGCTTTCTCAAGA+GGG 0.573600 6_1:+88135560 None:intergenic
TCTTCAAGGGCTTTCTCAAG+AGG 0.573816 6_1:+88135559 None:intergenic
GTTTAATCCAATAAAATCAA+AGG 0.577644 6_1:+88136628 None:intergenic
TGGCCAGCAACTCATTGATG+AGG 0.580800 6_1:+88138904 None:intergenic
GCTCCATGAGATCCTTAGTA+GGG 0.587979 6_1:-88136699 Msa0896920:CDS
GGAAGATGTTGAGATGATCA+AGG 0.589270 6_1:-88139363 Msa0896920:CDS
GATCACACTGAATGAACCAT+GGG 0.595444 6_1:-88138551 Msa0896920:CDS
TTGATGACTTCACTTAACTC+GGG 0.597810 6_1:+88136575 None:intergenic
AGTGGAGGTGTAAATAGGGA+AGG 0.601364 6_1:-88138945 Msa0896920:CDS
GCTTTCTCAAGAGGGAGTGT+GGG 0.606651 6_1:+88135568 None:intergenic
TTCAGTGGCAGAATCTCCAC+CGG 0.611444 6_1:+88138453 None:intergenic
ACATGCAGGCTGCTTCAGGA+TGG 0.613410 6_1:-88135861 Msa0896920:intron
TGGAATACCTATTGGCCCAA+CGG 0.614932 6_1:-88136309 Msa0896920:intron
GGATCACACTGAATGAACCA+TGG 0.617345 6_1:-88138552 Msa0896920:CDS
CAAAACTTGAATTGCACCGG+TGG 0.620786 6_1:-88138469 Msa0896920:CDS
AGTCACTATATAGGGTTCAG+TGG 0.627438 6_1:+88138438 None:intergenic
ATAACGATGGTATTCATCAA+CGG 0.630026 6_1:+88139510 None:intergenic
AGTGCATCTGTGTTGTAACT+GGG 0.635244 6_1:+88136551 None:intergenic
AGTTTAGCAGTAGAATGTGA+TGG 0.640780 6_1:+88139572 None:intergenic
TATTCATCTTCAAGTGACTG+AGG 0.648641 6_1:+88138756 None:intergenic
AGTATTGAACCTTATAACGA+TGG 0.651540 6_1:+88139497 None:intergenic
GCAGAAGGAAAGCTTAGTGG+AGG 0.668340 6_1:-88138960 Msa0896920:intron
AAGCCCTTGAAGATACACAA+AGG 0.697689 6_1:-88135549 Msa0896920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAATTATTATAAAT+TGG - chr6_1:88135894-88135913 Msa0896920:intron 0.0%
!!! TAATAAAAATTTATTTTATT+TGG - chr6_1:88137358-88137377 Msa0896920:intron 0.0%
!! AATTTATAATTATTATAAAT+TGG - chr6_1:88135894-88135913 Msa0896920:intron 0.0%
!!! TAATAAAAATTTATTTTATT+TGG - chr6_1:88137358-88137377 Msa0896920:intron 0.0%
!! TAAAAAAAAATCTTATGAAA+AGG + chr6_1:88135855-88135874 None:intergenic 10.0%
!! TTGTAAAAAAGTAATTATAA+AGG - chr6_1:88135979-88135998 Msa0896920:intron 10.0%
!! TAATTAAATATCATAAAGTT+AGG - chr6_1:88136408-88136427 Msa0896920:intron 10.0%
!! ATAAATACAATAACTATAAA+AGG + chr6_1:88137421-88137440 None:intergenic 10.0%
!!! ACCAAAAATATATTTTTATA+GGG + chr6_1:88137626-88137645 None:intergenic 10.0%
!!! AACCAAAAATATATTTTTAT+AGG + chr6_1:88137627-88137646 None:intergenic 10.0%
!!! AAATATAGAATATTTGATTT+TGG - chr6_1:88137658-88137677 Msa0896920:intron 10.0%
!!! AAATATAAAAAATTTGGTTT+TGG + chr6_1:88137854-88137873 None:intergenic 10.0%
!!! TATGTTTTTATTTTTTTCAA+AGG - chr6_1:88139173-88139192 Msa0896920:intron 10.0%
!!! TTATATACTAAATTTTGAAT+AGG - chr6_1:88139399-88139418 Msa0896920:intron 10.0%
!!! TATATACTAAATTTTGAATA+GGG - chr6_1:88139400-88139419 Msa0896920:intron 10.0%
!! TAAAAAAAAATCTTATGAAA+AGG + chr6_1:88135855-88135874 None:intergenic 10.0%
!! TTGTAAAAAAGTAATTATAA+AGG - chr6_1:88135979-88135998 Msa0896920:intron 10.0%
!! TAATTAAATATCATAAAGTT+AGG - chr6_1:88136408-88136427 Msa0896920:intron 10.0%
!! ATAAATACAATAACTATAAA+AGG + chr6_1:88137421-88137440 None:intergenic 10.0%
!!! ACCAAAAATATATTTTTATA+GGG + chr6_1:88137626-88137645 None:intergenic 10.0%
!!! AACCAAAAATATATTTTTAT+AGG + chr6_1:88137627-88137646 None:intergenic 10.0%
!!! AAATATAGAATATTTGATTT+TGG - chr6_1:88137658-88137677 Msa0896920:intron 10.0%
!!! AAATATAAAAAATTTGGTTT+TGG + chr6_1:88137854-88137873 None:intergenic 10.0%
!!! TATGTTTTTATTTTTTTCAA+AGG - chr6_1:88139173-88139192 Msa0896920:intron 10.0%
!!! TTATATACTAAATTTTGAAT+AGG - chr6_1:88139399-88139418 Msa0896920:intron 10.0%
!!! TATATACTAAATTTTGAATA+GGG - chr6_1:88139400-88139419 Msa0896920:intron 10.0%
!!! CATCAATGTTTTTATTATTA+TGG + chr6_1:88135669-88135688 None:intergenic 15.0%
!!! TTAATTATTTTTGGTCATAA+GGG + chr6_1:88136395-88136414 None:intergenic 15.0%
!!! TTTAATTATTTTTGGTCATA+AGG + chr6_1:88136396-88136415 None:intergenic 15.0%
!! TATAAATTAAAGGAAAGTTT+AGG + chr6_1:88136956-88136975 None:intergenic 15.0%
!! TTCAATTTACCTTAAAAATT+AGG - chr6_1:88137551-88137570 Msa0896920:intron 15.0%
!!! ATATTTAAGCCTAATTTTTA+AGG + chr6_1:88137563-88137582 None:intergenic 15.0%
!! TTAAAAATTAGGCTTAAATA+TGG - chr6_1:88137562-88137581 Msa0896920:intron 15.0%
!!! TCCCTATAAAAATATATTTT+TGG - chr6_1:88137622-88137641 Msa0896920:intron 15.0%
!! TCAAATATTCTATATTTACA+GGG + chr6_1:88137655-88137674 None:intergenic 15.0%
!! ATCAAATATTCTATATTTAC+AGG + chr6_1:88137656-88137675 None:intergenic 15.0%
!!! TCTCTGTAAAAATATTTTTT+TGG + chr6_1:88137890-88137909 None:intergenic 15.0%
!! ATATTTAAGCCTAAAAATTA+TGG - chr6_1:88137949-88137968 Msa0896920:intron 15.0%
!!! ATGAAATAACCATAATTTTT+AGG + chr6_1:88137961-88137980 None:intergenic 15.0%
!!! TATGATATTTTTTTTTTCAC+AGG - chr6_1:88138746-88138765 Msa0896920:CDS 15.0%
!! TGTGAATTAATAGAAAAATA+TGG + chr6_1:88138953-88138972 None:intergenic 15.0%
!! TATATTGTGAATCTATATAT+AGG - chr6_1:88139477-88139496 Msa0896920:intron 15.0%
!!! CATCAATGTTTTTATTATTA+TGG + chr6_1:88135669-88135688 None:intergenic 15.0%
!!! TTAATTATTTTTGGTCATAA+GGG + chr6_1:88136395-88136414 None:intergenic 15.0%
!!! TTTAATTATTTTTGGTCATA+AGG + chr6_1:88136396-88136415 None:intergenic 15.0%
!! TATAAATTAAAGGAAAGTTT+AGG + chr6_1:88136956-88136975 None:intergenic 15.0%
!! TTCAATTTACCTTAAAAATT+AGG - chr6_1:88137551-88137570 Msa0896920:intron 15.0%
!!! ATATTTAAGCCTAATTTTTA+AGG + chr6_1:88137563-88137582 None:intergenic 15.0%
!! TTAAAAATTAGGCTTAAATA+TGG - chr6_1:88137562-88137581 Msa0896920:intron 15.0%
!!! TCCCTATAAAAATATATTTT+TGG - chr6_1:88137622-88137641 Msa0896920:intron 15.0%
!! TCAAATATTCTATATTTACA+GGG + chr6_1:88137655-88137674 None:intergenic 15.0%
!! ATCAAATATTCTATATTTAC+AGG + chr6_1:88137656-88137675 None:intergenic 15.0%
!!! TCTCTGTAAAAATATTTTTT+TGG + chr6_1:88137890-88137909 None:intergenic 15.0%
!! ATATTTAAGCCTAAAAATTA+TGG - chr6_1:88137949-88137968 Msa0896920:intron 15.0%
!!! ATGAAATAACCATAATTTTT+AGG + chr6_1:88137961-88137980 None:intergenic 15.0%
!!! TATGATATTTTTTTTTTCAC+AGG - chr6_1:88138746-88138765 Msa0896920:CDS 15.0%
!! TGTGAATTAATAGAAAAATA+TGG + chr6_1:88138953-88138972 None:intergenic 15.0%
!! TATATTGTGAATCTATATAT+AGG - chr6_1:88139477-88139496 Msa0896920:intron 15.0%
!! AAACTTGTCAGATAAAATAA+AGG - chr6_1:88135533-88135552 Msa0896920:CDS 20.0%
!! TAACATGTGTTCTTATAATA+AGG - chr6_1:88135933-88135952 Msa0896920:intron 20.0%
!!! ATAGATTTTCGAATTTAGAT+TGG - chr6_1:88136809-88136828 Msa0896920:intron 20.0%
!! AATTTCTGCGTATAAATTAA+AGG + chr6_1:88136966-88136985 None:intergenic 20.0%
!! TATGAACCTTAAATTATATG+TGG - chr6_1:88137111-88137130 Msa0896920:intron 20.0%
!!! CATTGTTGACATTTTTTTTT+AGG - chr6_1:88137205-88137224 Msa0896920:intron 20.0%
!!! ATAAATAGAATTTTCTGTCT+TGG - chr6_1:88137289-88137308 Msa0896920:intron 20.0%
!! ATAGTTATTGTATTTATCGA+AGG - chr6_1:88137424-88137443 Msa0896920:intron 20.0%
!!! CAATATGAAATGATTTTACA+AGG + chr6_1:88137705-88137724 None:intergenic 20.0%
!! GGACTAAAATGAATATTATA+GGG + chr6_1:88137736-88137755 None:intergenic 20.0%
!! AGGACTAAAATGAATATTAT+AGG + chr6_1:88137737-88137756 None:intergenic 20.0%
!! CAAATATTCTACATATTACA+AGG - chr6_1:88137776-88137795 Msa0896920:intron 20.0%
!!! AAATTGATTCATATTGGATT+CGG + chr6_1:88137803-88137822 None:intergenic 20.0%
!!! CTTGTAAAATTGATTCATAT+TGG + chr6_1:88137809-88137828 None:intergenic 20.0%
!!! CAATATGAATCAATTTTACA+AGG - chr6_1:88137807-88137826 Msa0896920:intron 20.0%
!!! ACCAAATTTTTTATATTTGC+AGG - chr6_1:88137856-88137875 Msa0896920:intron 20.0%
!!! CCAAATTTTTTATATTTGCA+GGG - chr6_1:88137857-88137876 Msa0896920:intron 20.0%
!! CAATTTCTATTTATATACGA+AGG - chr6_1:88138068-88138087 Msa0896920:intron 20.0%
!! TATTTAAAAGAATGTATTGC+AGG - chr6_1:88138331-88138350 Msa0896920:intron 20.0%
!! GTTTAATCCAATAAAATCAA+AGG + chr6_1:88138462-88138481 None:intergenic 20.0%
!!! AGGATACAATTACATTTTTT+AGG - chr6_1:88138694-88138713 Msa0896920:intron 20.0%
!! AATAATGTATATTGTCAACT+AGG + chr6_1:88138913-88138932 None:intergenic 20.0%
!! CTTACTAATATACAATTTGA+TGG - chr6_1:88139446-88139465 Msa0896920:intron 20.0%
!! AAACTTGTCAGATAAAATAA+AGG - chr6_1:88135533-88135552 Msa0896920:CDS 20.0%
!! TAACATGTGTTCTTATAATA+AGG - chr6_1:88135933-88135952 Msa0896920:intron 20.0%
!!! ATAGATTTTCGAATTTAGAT+TGG - chr6_1:88136809-88136828 Msa0896920:intron 20.0%
!! AATTTCTGCGTATAAATTAA+AGG + chr6_1:88136966-88136985 None:intergenic 20.0%
!! TATGAACCTTAAATTATATG+TGG - chr6_1:88137111-88137130 Msa0896920:intron 20.0%
!!! CATTGTTGACATTTTTTTTT+AGG - chr6_1:88137205-88137224 Msa0896920:intron 20.0%
!!! ATAAATAGAATTTTCTGTCT+TGG - chr6_1:88137289-88137308 Msa0896920:intron 20.0%
!! ATAGTTATTGTATTTATCGA+AGG - chr6_1:88137424-88137443 Msa0896920:intron 20.0%
!!! CAATATGAAATGATTTTACA+AGG + chr6_1:88137705-88137724 None:intergenic 20.0%
!! GGACTAAAATGAATATTATA+GGG + chr6_1:88137736-88137755 None:intergenic 20.0%
!! AGGACTAAAATGAATATTAT+AGG + chr6_1:88137737-88137756 None:intergenic 20.0%
!! CAAATATTCTACATATTACA+AGG - chr6_1:88137776-88137795 Msa0896920:intron 20.0%
!!! AAATTGATTCATATTGGATT+CGG + chr6_1:88137803-88137822 None:intergenic 20.0%
!!! CTTGTAAAATTGATTCATAT+TGG + chr6_1:88137809-88137828 None:intergenic 20.0%
!!! CAATATGAATCAATTTTACA+AGG - chr6_1:88137807-88137826 Msa0896920:intron 20.0%
!!! ACCAAATTTTTTATATTTGC+AGG - chr6_1:88137856-88137875 Msa0896920:intron 20.0%
!!! CCAAATTTTTTATATTTGCA+GGG - chr6_1:88137857-88137876 Msa0896920:intron 20.0%
!! CAATTTCTATTTATATACGA+AGG - chr6_1:88138068-88138087 Msa0896920:intron 20.0%
!! TATTTAAAAGAATGTATTGC+AGG - chr6_1:88138331-88138350 Msa0896920:intron 20.0%
!! GTTTAATCCAATAAAATCAA+AGG + chr6_1:88138462-88138481 None:intergenic 20.0%
!!! AGGATACAATTACATTTTTT+AGG - chr6_1:88138694-88138713 Msa0896920:intron 20.0%
!! AATAATGTATATTGTCAACT+AGG + chr6_1:88138913-88138932 None:intergenic 20.0%
!! CTTACTAATATACAATTTGA+TGG - chr6_1:88139446-88139465 Msa0896920:intron 20.0%
! AAAATAAAGGACAGAAGTAA+TGG - chr6_1:88135546-88135565 Msa0896920:CDS 25.0%
! AATAAAAACATTGATGCTAG+AGG - chr6_1:88135673-88135692 Msa0896920:intron 25.0%
! AGACATTATTGATATAATGC+AGG - chr6_1:88135703-88135722 Msa0896920:intron 25.0%
! ATTACTTTACTAATTGCAGA+AGG - chr6_1:88136112-88136131 Msa0896920:intron 25.0%
!! AGTTTATATTTGATGACCTT+TGG + chr6_1:88136206-88136225 None:intergenic 25.0%
! TCAATTGTATCTATCAATGT+AGG - chr6_1:88136271-88136290 Msa0896920:intron 25.0%
!!! TTTTGTTACCCTTTTTCATT+GGG - chr6_1:88136303-88136322 Msa0896920:intron 25.0%
! TCACTTGAAGATGAATATAA+TGG - chr6_1:88136337-88136356 Msa0896920:intron 25.0%
! TGATTATGAGTCACTATATA+GGG + chr6_1:88136660-88136679 None:intergenic 25.0%
! TTGATTATGAGTCACTATAT+AGG + chr6_1:88136661-88136680 None:intergenic 25.0%
!!! TAAACTTGTTGGATTGATTT+CGG + chr6_1:88136836-88136855 None:intergenic 25.0%
! TTATACGCAGAAATTTCAAA+AGG - chr6_1:88136971-88136990 Msa0896920:intron 25.0%
! TATACGCAGAAATTTCAAAA+GGG - chr6_1:88136972-88136991 Msa0896920:intron 25.0%
! TGAGTTCCACATATAATTTA+AGG + chr6_1:88137120-88137139 None:intergenic 25.0%
!! TCTTTAAGAGTTTAATGTCT+AGG + chr6_1:88137157-88137176 None:intergenic 25.0%
! CATTAAACTCTTAAAGAGAA+AGG - chr6_1:88137160-88137179 Msa0896920:intron 25.0%
!!! TTTTTTTTTAGGCTCAATGT+TGG - chr6_1:88137216-88137235 Msa0896920:intron 25.0%
!! CGAAGGAAAAAAATGTTTTA+TGG - chr6_1:88137441-88137460 Msa0896920:intron 25.0%
! ATTAGGCTTAAATATGGAAA+TGG - chr6_1:88137568-88137587 Msa0896920:intron 25.0%
! AGGATTAAAACAAAATACCA+AGG + chr6_1:88137685-88137704 None:intergenic 25.0%
!! AGGTCTAAAACAAAATATCA+AGG - chr6_1:88137827-88137846 Msa0896920:intron 25.0%
! CCCTGCAAATATAAAAAATT+TGG + chr6_1:88137860-88137879 None:intergenic 25.0%
! TAGTGAATAGTAGATTACTT+AGG + chr6_1:88138172-88138191 None:intergenic 25.0%
! AATATCATGTAAGATGTTGT+TGG - chr6_1:88138982-88139001 Msa0896920:intron 25.0%
! CAAAGATAAAACATATGCAT+TGG - chr6_1:88139073-88139092 Msa0896920:intron 25.0%
! ATGGTTATCAATTTATCCAA+AGG - chr6_1:88139245-88139264 Msa0896920:intron 25.0%
! TGGTTATCAATTTATCCAAA+GGG - chr6_1:88139246-88139265 Msa0896920:intron 25.0%
! AATCCATTTATGACTGAAAA+TGG - chr6_1:88139309-88139328 Msa0896920:CDS 25.0%
!! TTACCATTTTCAGTCATAAA+TGG + chr6_1:88139315-88139334 None:intergenic 25.0%
! TGTGAATCTATATATAGGTA+TGG - chr6_1:88139482-88139501 Msa0896920:intron 25.0%
! AAAATAAAGGACAGAAGTAA+TGG - chr6_1:88135546-88135565 Msa0896920:CDS 25.0%
! AATAAAAACATTGATGCTAG+AGG - chr6_1:88135673-88135692 Msa0896920:intron 25.0%
! AGACATTATTGATATAATGC+AGG - chr6_1:88135703-88135722 Msa0896920:intron 25.0%
! ATTACTTTACTAATTGCAGA+AGG - chr6_1:88136112-88136131 Msa0896920:intron 25.0%
!! AGTTTATATTTGATGACCTT+TGG + chr6_1:88136206-88136225 None:intergenic 25.0%
! TCAATTGTATCTATCAATGT+AGG - chr6_1:88136271-88136290 Msa0896920:intron 25.0%
!!! TTTTGTTACCCTTTTTCATT+GGG - chr6_1:88136303-88136322 Msa0896920:intron 25.0%
! TCACTTGAAGATGAATATAA+TGG - chr6_1:88136337-88136356 Msa0896920:intron 25.0%
! TGATTATGAGTCACTATATA+GGG + chr6_1:88136660-88136679 None:intergenic 25.0%
! TTGATTATGAGTCACTATAT+AGG + chr6_1:88136661-88136680 None:intergenic 25.0%
!!! TAAACTTGTTGGATTGATTT+CGG + chr6_1:88136836-88136855 None:intergenic 25.0%
! TTATACGCAGAAATTTCAAA+AGG - chr6_1:88136971-88136990 Msa0896920:intron 25.0%
! TATACGCAGAAATTTCAAAA+GGG - chr6_1:88136972-88136991 Msa0896920:intron 25.0%
! TGAGTTCCACATATAATTTA+AGG + chr6_1:88137120-88137139 None:intergenic 25.0%
!! TCTTTAAGAGTTTAATGTCT+AGG + chr6_1:88137157-88137176 None:intergenic 25.0%
! CATTAAACTCTTAAAGAGAA+AGG - chr6_1:88137160-88137179 Msa0896920:intron 25.0%
!!! TTTTTTTTTAGGCTCAATGT+TGG - chr6_1:88137216-88137235 Msa0896920:intron 25.0%
!! CGAAGGAAAAAAATGTTTTA+TGG - chr6_1:88137441-88137460 Msa0896920:intron 25.0%
! ATTAGGCTTAAATATGGAAA+TGG - chr6_1:88137568-88137587 Msa0896920:intron 25.0%
! AGGATTAAAACAAAATACCA+AGG + chr6_1:88137685-88137704 None:intergenic 25.0%
!! AGGTCTAAAACAAAATATCA+AGG - chr6_1:88137827-88137846 Msa0896920:intron 25.0%
! CCCTGCAAATATAAAAAATT+TGG + chr6_1:88137860-88137879 None:intergenic 25.0%
! TAGTGAATAGTAGATTACTT+AGG + chr6_1:88138172-88138191 None:intergenic 25.0%
! AATATCATGTAAGATGTTGT+TGG - chr6_1:88138982-88139001 Msa0896920:intron 25.0%
! CAAAGATAAAACATATGCAT+TGG - chr6_1:88139073-88139092 Msa0896920:intron 25.0%
! ATGGTTATCAATTTATCCAA+AGG - chr6_1:88139245-88139264 Msa0896920:intron 25.0%
! TGGTTATCAATTTATCCAAA+GGG - chr6_1:88139246-88139265 Msa0896920:intron 25.0%
! AATCCATTTATGACTGAAAA+TGG - chr6_1:88139309-88139328 Msa0896920:CDS 25.0%
!! TTACCATTTTCAGTCATAAA+TGG + chr6_1:88139315-88139334 None:intergenic 25.0%
! TGTGAATCTATATATAGGTA+TGG - chr6_1:88139482-88139501 Msa0896920:intron 25.0%
ATAACGATGGTATTCATCAA+CGG + chr6_1:88135580-88135599 None:intergenic 30.0%
TGATGAATACCATCGTTATA+AGG - chr6_1:88135581-88135600 Msa0896920:CDS 30.0%
! AGTATTGAACCTTATAACGA+TGG + chr6_1:88135593-88135612 None:intergenic 30.0%
! ACACACAAATTAAAGCATCA+TGG + chr6_1:88135630-88135649 None:intergenic 30.0%
! CTTATAGATTTTCCATCTCT+TGG - chr6_1:88135762-88135781 Msa0896920:intron 30.0%
!! TTTCTTACTTGGAAGTATTC+TGG + chr6_1:88135789-88135808 None:intergenic 30.0%
ATACTTCCAAGTAAGAAACT+AGG - chr6_1:88135791-88135810 Msa0896920:CDS 30.0%
TACTTCCAAGTAAGAAACTA+GGG - chr6_1:88135792-88135811 Msa0896920:CDS 30.0%
CAATGAAAAAGGGTAACAAA+AGG + chr6_1:88136304-88136323 None:intergenic 30.0%
!! CTTTTGTTACCCTTTTTCAT+TGG - chr6_1:88136302-88136321 Msa0896920:intron 30.0%
GATGTGAGTTACACTATATT+TGG + chr6_1:88136373-88136392 None:intergenic 30.0%
TACACATGGAAATAGTTAGA+GGG + chr6_1:88136452-88136471 None:intergenic 30.0%
!! GAGCTTTGCTTTAAAGAATT+TGG - chr6_1:88136495-88136514 Msa0896920:intron 30.0%
! TTGGTGATAGAGTAAAGAAT+TGG - chr6_1:88136514-88136533 Msa0896920:intron 30.0%
TGTCTACAAAACTAAGTATC+AGG - chr6_1:88136707-88136726 Msa0896920:CDS 30.0%
AATTCACATGTCTTAGACTT+GGG - chr6_1:88136762-88136781 Msa0896920:intron 30.0%
AAATTTCAAAAGGGCAAGAT+AGG - chr6_1:88136981-88137000 Msa0896920:intron 30.0%
AATTTCAAAAGGGCAAGATA+GGG - chr6_1:88136982-88137001 Msa0896920:intron 30.0%
! TCCAATTTTGTATCATAGAG+TGG + chr6_1:88137035-88137054 None:intergenic 30.0%
!!! GCATTTTGATTCTTGTTAAC+CGG - chr6_1:88137238-88137257 Msa0896920:intron 30.0%
ACTAATCACGTGCAAAAATA+TGG - chr6_1:88137503-88137522 Msa0896920:intron 30.0%
GGTTAACTTAGATAAGTAGA+TGG - chr6_1:88137524-88137543 Msa0896920:intron 30.0%
!! GAATATTTGATTTTGGTCCT+TGG - chr6_1:88137665-88137684 Msa0896920:intron 30.0%
!! TCATTTTAGTCCTCATTTTG+AGG - chr6_1:88137744-88137763 Msa0896920:intron 30.0%
!! CATTTTAGTCCTCATTTTGA+GGG - chr6_1:88137745-88137764 Msa0896920:intron 30.0%
CAAAATGTCAGATATTTGCA+GGG - chr6_1:88137917-88137936 Msa0896920:intron 30.0%
AAGAATGTATTGCAGGTATA+TGG - chr6_1:88138338-88138357 Msa0896920:intron 30.0%
TATATGGATCCATTGACAAT+TGG - chr6_1:88138354-88138373 Msa0896920:intron 30.0%
!! GCTTGATACTTTGAGAATTT+TGG + chr6_1:88138423-88138442 None:intergenic 30.0%
!! AAGAGGTCCTTTGATTTTAT+TGG - chr6_1:88138452-88138471 Msa0896920:CDS 30.0%
ATTCTACTCTAATACGTCAA+AGG - chr6_1:88138661-88138680 Msa0896920:intron 30.0%
TCAACTATGTCATCTATTGA+GGG - chr6_1:88139110-88139129 Msa0896920:intron 30.0%
AATCCTTTGTGTATCTTCAA+GGG + chr6_1:88139544-88139563 None:intergenic 30.0%
ATAACGATGGTATTCATCAA+CGG + chr6_1:88135580-88135599 None:intergenic 30.0%
TGATGAATACCATCGTTATA+AGG - chr6_1:88135581-88135600 Msa0896920:CDS 30.0%
! AGTATTGAACCTTATAACGA+TGG + chr6_1:88135593-88135612 None:intergenic 30.0%
! ACACACAAATTAAAGCATCA+TGG + chr6_1:88135630-88135649 None:intergenic 30.0%
! CTTATAGATTTTCCATCTCT+TGG - chr6_1:88135762-88135781 Msa0896920:intron 30.0%
!! TTTCTTACTTGGAAGTATTC+TGG + chr6_1:88135789-88135808 None:intergenic 30.0%
ATACTTCCAAGTAAGAAACT+AGG - chr6_1:88135791-88135810 Msa0896920:CDS 30.0%
TACTTCCAAGTAAGAAACTA+GGG - chr6_1:88135792-88135811 Msa0896920:CDS 30.0%
CAATGAAAAAGGGTAACAAA+AGG + chr6_1:88136304-88136323 None:intergenic 30.0%
!! CTTTTGTTACCCTTTTTCAT+TGG - chr6_1:88136302-88136321 Msa0896920:intron 30.0%
GATGTGAGTTACACTATATT+TGG + chr6_1:88136373-88136392 None:intergenic 30.0%
TACACATGGAAATAGTTAGA+GGG + chr6_1:88136452-88136471 None:intergenic 30.0%
!! GAGCTTTGCTTTAAAGAATT+TGG - chr6_1:88136495-88136514 Msa0896920:intron 30.0%
! TTGGTGATAGAGTAAAGAAT+TGG - chr6_1:88136514-88136533 Msa0896920:intron 30.0%
TGTCTACAAAACTAAGTATC+AGG - chr6_1:88136707-88136726 Msa0896920:CDS 30.0%
AATTCACATGTCTTAGACTT+GGG - chr6_1:88136762-88136781 Msa0896920:intron 30.0%
AAATTTCAAAAGGGCAAGAT+AGG - chr6_1:88136981-88137000 Msa0896920:intron 30.0%
AATTTCAAAAGGGCAAGATA+GGG - chr6_1:88136982-88137001 Msa0896920:intron 30.0%
! TCCAATTTTGTATCATAGAG+TGG + chr6_1:88137035-88137054 None:intergenic 30.0%
!!! GCATTTTGATTCTTGTTAAC+CGG - chr6_1:88137238-88137257 Msa0896920:intron 30.0%
ACTAATCACGTGCAAAAATA+TGG - chr6_1:88137503-88137522 Msa0896920:intron 30.0%
GGTTAACTTAGATAAGTAGA+TGG - chr6_1:88137524-88137543 Msa0896920:intron 30.0%
!! GAATATTTGATTTTGGTCCT+TGG - chr6_1:88137665-88137684 Msa0896920:intron 30.0%
!! TCATTTTAGTCCTCATTTTG+AGG - chr6_1:88137744-88137763 Msa0896920:intron 30.0%
!! CATTTTAGTCCTCATTTTGA+GGG - chr6_1:88137745-88137764 Msa0896920:intron 30.0%
CAAAATGTCAGATATTTGCA+GGG - chr6_1:88137917-88137936 Msa0896920:intron 30.0%
AAGAATGTATTGCAGGTATA+TGG - chr6_1:88138338-88138357 Msa0896920:intron 30.0%
TATATGGATCCATTGACAAT+TGG - chr6_1:88138354-88138373 Msa0896920:intron 30.0%
!! GCTTGATACTTTGAGAATTT+TGG + chr6_1:88138423-88138442 None:intergenic 30.0%
!! AAGAGGTCCTTTGATTTTAT+TGG - chr6_1:88138452-88138471 Msa0896920:CDS 30.0%
ATTCTACTCTAATACGTCAA+AGG - chr6_1:88138661-88138680 Msa0896920:intron 30.0%
TCAACTATGTCATCTATTGA+GGG - chr6_1:88139110-88139129 Msa0896920:intron 30.0%
AATCCTTTGTGTATCTTCAA+GGG + chr6_1:88139544-88139563 None:intergenic 30.0%
AGTTTAGCAGTAGAATGTGA+TGG + chr6_1:88135518-88135537 None:intergenic 35.0%
GATGATCAAGGACATCAATA+TGG - chr6_1:88135736-88135755 Msa0896920:intron 35.0%
! GGCTAAGAGACATTTTCTTT+TGG - chr6_1:88135813-88135832 Msa0896920:CDS 35.0%
ATATTTCAACATGTGCCCTA+AGG - chr6_1:88136051-88136070 Msa0896920:intron 35.0%
! AAATGCTAACTTGTGCCTTA+GGG + chr6_1:88136069-88136088 None:intergenic 35.0%
TATTCATCTTCAAGTGACTG+AGG + chr6_1:88136334-88136353 None:intergenic 35.0%
CTACACATGGAAATAGTTAG+AGG + chr6_1:88136453-88136472 None:intergenic 35.0%
CTCTAACTATTTCCATGTGT+AGG - chr6_1:88136451-88136470 Msa0896920:intron 35.0%
TCGAAAATCATTCCTACACA+TGG + chr6_1:88136466-88136485 None:intergenic 35.0%
CAATTCACATGTCTTAGACT+TGG - chr6_1:88136761-88136780 Msa0896920:intron 35.0%
GCCACTCTATGATACAAAAT+TGG - chr6_1:88137031-88137050 Msa0896920:intron 35.0%
!! AGAGCCATTGATTTCATGTT+TGG - chr6_1:88137071-88137090 Msa0896920:intron 35.0%
CCATCCAAACATGAAATCAA+TGG + chr6_1:88137078-88137097 None:intergenic 35.0%
!! CCATTGATTTCATGTTTGGA+TGG - chr6_1:88137075-88137094 Msa0896920:intron 35.0%
AGTGATCAATCTGGTGATAT+GGG + chr6_1:88137486-88137505 None:intergenic 35.0%
TAGTGATCAATCTGGTGATA+TGG + chr6_1:88137487-88137506 None:intergenic 35.0%
AAATGGTCCCTGCAAATATA+TGG - chr6_1:88137585-88137604 Msa0896920:intron 35.0%
CAAAACGCCATATATTTGCA+GGG + chr6_1:88137595-88137614 None:intergenic 35.0%
!! GATTTTAGTCCCTCAAAATG+AGG + chr6_1:88137757-88137776 None:intergenic 35.0%
! CCTGCAAATATCTGACATTT+TGG + chr6_1:88137919-88137938 None:intergenic 35.0%
CCAAAATGTCAGATATTTGC+AGG - chr6_1:88137916-88137935 Msa0896920:intron 35.0%
TCACTACATCTTCAAACATG+TGG + chr6_1:88138258-88138277 None:intergenic 35.0%
TATCAAGCAAAGCTTGTAAG+AGG - chr6_1:88138435-88138454 Msa0896920:CDS 35.0%
! TTGATGACTTCACTTAACTC+GGG + chr6_1:88138515-88138534 None:intergenic 35.0%
! CTTGATGACTTCACTTAACT+CGG + chr6_1:88138516-88138535 None:intergenic 35.0%
! ACGTCAAAGGTATAAGTACA+AGG - chr6_1:88138674-88138693 Msa0896920:intron 35.0%
ATTATCATGCACATACCGTT+GGG + chr6_1:88138796-88138815 None:intergenic 35.0%
TATTATCATGCACATACCGT+TGG + chr6_1:88138797-88138816 None:intergenic 35.0%
TCAACTAGGTCATCTATTGA+GGG + chr6_1:88138899-88138918 None:intergenic 35.0%
GTCAACTATGTCATCTATTG+AGG - chr6_1:88139109-88139128 Msa0896920:intron 35.0%
CTACACTATATTACACATGC+AGG - chr6_1:88139212-88139231 Msa0896920:intron 35.0%
CAATCCTTTGTGTATCTTCA+AGG + chr6_1:88139545-88139564 None:intergenic 35.0%
AGTTTAGCAGTAGAATGTGA+TGG + chr6_1:88135518-88135537 None:intergenic 35.0%
GATGATCAAGGACATCAATA+TGG - chr6_1:88135736-88135755 Msa0896920:intron 35.0%
! GGCTAAGAGACATTTTCTTT+TGG - chr6_1:88135813-88135832 Msa0896920:CDS 35.0%
ATATTTCAACATGTGCCCTA+AGG - chr6_1:88136051-88136070 Msa0896920:intron 35.0%
! AAATGCTAACTTGTGCCTTA+GGG + chr6_1:88136069-88136088 None:intergenic 35.0%
TATTCATCTTCAAGTGACTG+AGG + chr6_1:88136334-88136353 None:intergenic 35.0%
CTACACATGGAAATAGTTAG+AGG + chr6_1:88136453-88136472 None:intergenic 35.0%
CTCTAACTATTTCCATGTGT+AGG - chr6_1:88136451-88136470 Msa0896920:intron 35.0%
TCGAAAATCATTCCTACACA+TGG + chr6_1:88136466-88136485 None:intergenic 35.0%
CAATTCACATGTCTTAGACT+TGG - chr6_1:88136761-88136780 Msa0896920:intron 35.0%
GCCACTCTATGATACAAAAT+TGG - chr6_1:88137031-88137050 Msa0896920:intron 35.0%
!! AGAGCCATTGATTTCATGTT+TGG - chr6_1:88137071-88137090 Msa0896920:intron 35.0%
CCATCCAAACATGAAATCAA+TGG + chr6_1:88137078-88137097 None:intergenic 35.0%
!! CCATTGATTTCATGTTTGGA+TGG - chr6_1:88137075-88137094 Msa0896920:intron 35.0%
AGTGATCAATCTGGTGATAT+GGG + chr6_1:88137486-88137505 None:intergenic 35.0%
TAGTGATCAATCTGGTGATA+TGG + chr6_1:88137487-88137506 None:intergenic 35.0%
AAATGGTCCCTGCAAATATA+TGG - chr6_1:88137585-88137604 Msa0896920:intron 35.0%
CAAAACGCCATATATTTGCA+GGG + chr6_1:88137595-88137614 None:intergenic 35.0%
!! GATTTTAGTCCCTCAAAATG+AGG + chr6_1:88137757-88137776 None:intergenic 35.0%
! CCTGCAAATATCTGACATTT+TGG + chr6_1:88137919-88137938 None:intergenic 35.0%
CCAAAATGTCAGATATTTGC+AGG - chr6_1:88137916-88137935 Msa0896920:intron 35.0%
TCACTACATCTTCAAACATG+TGG + chr6_1:88138258-88138277 None:intergenic 35.0%
TATCAAGCAAAGCTTGTAAG+AGG - chr6_1:88138435-88138454 Msa0896920:CDS 35.0%
! TTGATGACTTCACTTAACTC+GGG + chr6_1:88138515-88138534 None:intergenic 35.0%
! CTTGATGACTTCACTTAACT+CGG + chr6_1:88138516-88138535 None:intergenic 35.0%
! ACGTCAAAGGTATAAGTACA+AGG - chr6_1:88138674-88138693 Msa0896920:intron 35.0%
ATTATCATGCACATACCGTT+GGG + chr6_1:88138796-88138815 None:intergenic 35.0%
TATTATCATGCACATACCGT+TGG + chr6_1:88138797-88138816 None:intergenic 35.0%
TCAACTAGGTCATCTATTGA+GGG + chr6_1:88138899-88138918 None:intergenic 35.0%
GTCAACTATGTCATCTATTG+AGG - chr6_1:88139109-88139128 Msa0896920:intron 35.0%
CTACACTATATTACACATGC+AGG - chr6_1:88139212-88139231 Msa0896920:intron 35.0%
CAATCCTTTGTGTATCTTCA+AGG + chr6_1:88139545-88139564 None:intergenic 35.0%
! AATGTGATGGTGCTTTGAAC+CGG + chr6_1:88135505-88135524 None:intergenic 40.0%
GGAAGATGTTGAGATGATCA+AGG - chr6_1:88135724-88135743 Msa0896920:intron 40.0%
AAGTATTCTGGACCAAGAGA+TGG + chr6_1:88135777-88135796 None:intergenic 40.0%
CTTAGCCCTAGTTTCTTACT+TGG + chr6_1:88135800-88135819 None:intergenic 40.0%
! GAAATGCTAACTTGTGCCTT+AGG + chr6_1:88136070-88136089 None:intergenic 40.0%
ATTGCAGAAGGAAAGCTTAG+TGG - chr6_1:88136124-88136143 Msa0896920:intron 40.0%
! AGCTTAGTGGAGGTGTAAAT+AGG - chr6_1:88136137-88136156 Msa0896920:intron 40.0%
! GCTTAGTGGAGGTGTAAATA+GGG - chr6_1:88136138-88136157 Msa0896920:intron 40.0%
AGGAAGGTCCCAATGAAAAA+GGG + chr6_1:88136314-88136333 None:intergenic 40.0%
GATCACACTGAATGAACCAT+GGG - chr6_1:88136536-88136555 Msa0896920:intron 40.0%
TCCATCAACATAAGCATGCT+TGG + chr6_1:88136568-88136587 None:intergenic 40.0%
TGGCAAAACTTGAATTGCAC+CGG - chr6_1:88136615-88136634 Msa0896920:CDS 40.0%
AGTCACTATATAGGGTTCAG+TGG + chr6_1:88136652-88136671 None:intergenic 40.0%
CTCTCGCTATGTAAACTTGT+TGG + chr6_1:88136847-88136866 None:intergenic 40.0%
GGATAACATTAGTGTGTCAC+TGG - chr6_1:88137003-88137022 Msa0896920:intron 40.0%
! AACATTAGTGTGTCACTGGA+CGG - chr6_1:88137007-88137026 Msa0896920:intron 40.0%
CACGTGATTAGTGATCAATC+TGG + chr6_1:88137495-88137514 None:intergenic 40.0%
CCAAAACGCCATATATTTGC+AGG + chr6_1:88137596-88137615 None:intergenic 40.0%
! CCTGCAAATATATGGCGTTT+TGG - chr6_1:88137593-88137612 Msa0896920:intron 40.0%
GGATAGTCTCCAATTGTCAA+TGG + chr6_1:88138366-88138385 None:intergenic 40.0%
GGGTGCATTAGTTGCATAAT+GGG + chr6_1:88138495-88138514 None:intergenic 40.0%
AGTGCATCTGTGTTGTAACT+GGG + chr6_1:88138539-88138558 None:intergenic 40.0%
AAGTGCATCTGTGTTGTAAC+TGG + chr6_1:88138540-88138559 None:intergenic 40.0%
! GGGAGTATATGCTCTCTTAT+TGG + chr6_1:88138871-88138890 None:intergenic 40.0%
GTCAACTAGGTCATCTATTG+AGG + chr6_1:88138900-88138919 None:intergenic 40.0%
! ATATGCATTGGTACGTGTGT+CGG - chr6_1:88139085-88139104 Msa0896920:intron 40.0%
AACAAGTCGTGAATACCCTT+TGG + chr6_1:88139264-88139283 None:intergenic 40.0%
AAGCCCTTGAAGATACACAA+AGG - chr6_1:88139538-88139557 Msa0896920:CDS 40.0%
! AATGTGATGGTGCTTTGAAC+CGG + chr6_1:88135505-88135524 None:intergenic 40.0%
GGAAGATGTTGAGATGATCA+AGG - chr6_1:88135724-88135743 Msa0896920:intron 40.0%
AAGTATTCTGGACCAAGAGA+TGG + chr6_1:88135777-88135796 None:intergenic 40.0%
CTTAGCCCTAGTTTCTTACT+TGG + chr6_1:88135800-88135819 None:intergenic 40.0%
! GAAATGCTAACTTGTGCCTT+AGG + chr6_1:88136070-88136089 None:intergenic 40.0%
ATTGCAGAAGGAAAGCTTAG+TGG - chr6_1:88136124-88136143 Msa0896920:intron 40.0%
! AGCTTAGTGGAGGTGTAAAT+AGG - chr6_1:88136137-88136156 Msa0896920:intron 40.0%
! GCTTAGTGGAGGTGTAAATA+GGG - chr6_1:88136138-88136157 Msa0896920:intron 40.0%
AGGAAGGTCCCAATGAAAAA+GGG + chr6_1:88136314-88136333 None:intergenic 40.0%
GATCACACTGAATGAACCAT+GGG - chr6_1:88136536-88136555 Msa0896920:intron 40.0%
TCCATCAACATAAGCATGCT+TGG + chr6_1:88136568-88136587 None:intergenic 40.0%
TGGCAAAACTTGAATTGCAC+CGG - chr6_1:88136615-88136634 Msa0896920:CDS 40.0%
AGTCACTATATAGGGTTCAG+TGG + chr6_1:88136652-88136671 None:intergenic 40.0%
CTCTCGCTATGTAAACTTGT+TGG + chr6_1:88136847-88136866 None:intergenic 40.0%
GGATAACATTAGTGTGTCAC+TGG - chr6_1:88137003-88137022 Msa0896920:intron 40.0%
! AACATTAGTGTGTCACTGGA+CGG - chr6_1:88137007-88137026 Msa0896920:intron 40.0%
CACGTGATTAGTGATCAATC+TGG + chr6_1:88137495-88137514 None:intergenic 40.0%
CCAAAACGCCATATATTTGC+AGG + chr6_1:88137596-88137615 None:intergenic 40.0%
! CCTGCAAATATATGGCGTTT+TGG - chr6_1:88137593-88137612 Msa0896920:intron 40.0%
GGATAGTCTCCAATTGTCAA+TGG + chr6_1:88138366-88138385 None:intergenic 40.0%
GGGTGCATTAGTTGCATAAT+GGG + chr6_1:88138495-88138514 None:intergenic 40.0%
AGTGCATCTGTGTTGTAACT+GGG + chr6_1:88138539-88138558 None:intergenic 40.0%
AAGTGCATCTGTGTTGTAAC+TGG + chr6_1:88138540-88138559 None:intergenic 40.0%
! GGGAGTATATGCTCTCTTAT+TGG + chr6_1:88138871-88138890 None:intergenic 40.0%
GTCAACTAGGTCATCTATTG+AGG + chr6_1:88138900-88138919 None:intergenic 40.0%
! ATATGCATTGGTACGTGTGT+CGG - chr6_1:88139085-88139104 Msa0896920:intron 40.0%
AACAAGTCGTGAATACCCTT+TGG + chr6_1:88139264-88139283 None:intergenic 40.0%
AAGCCCTTGAAGATACACAA+AGG - chr6_1:88139538-88139557 Msa0896920:CDS 40.0%
! AGTGGAGGTGTAAATAGGGA+AGG - chr6_1:88136142-88136161 Msa0896920:intron 45.0%
CAACCTCATCAATGAGTTGC+TGG - chr6_1:88136180-88136199 Msa0896920:intron 45.0%
ATCAATGAGTTGCTGGCCAA+AGG - chr6_1:88136187-88136206 Msa0896920:intron 45.0%
GAGGAAGGTCCCAATGAAAA+AGG + chr6_1:88136315-88136334 None:intergenic 45.0%
CATCTTCAAGTGACTGAGGA+AGG + chr6_1:88136330-88136349 None:intergenic 45.0%
GGATCACACTGAATGAACCA+TGG - chr6_1:88136535-88136554 Msa0896920:intron 45.0%
AACATAAGCATGCTTGGCGA+AGG + chr6_1:88136562-88136581 None:intergenic 45.0%
GCCAAGCATGCTTATGTTGA+TGG - chr6_1:88136564-88136583 Msa0896920:CDS 45.0%
!! GGTGCAATTCAAGTTTTGCC+AGG + chr6_1:88136616-88136635 None:intergenic 45.0%
CAAAACTTGAATTGCACCGG+TGG - chr6_1:88136618-88136637 Msa0896920:CDS 45.0%
AGAATGTTAATCAGTGCCCC+GGG + chr6_1:88137398-88137417 None:intergenic 45.0%
GAGAATGTTAATCAGTGCCC+CGG + chr6_1:88137399-88137418 None:intergenic 45.0%
ACTAAGGATCTCATGGAGCT+TGG + chr6_1:88138387-88138406 None:intergenic 45.0%
AGCTCCATGAGATCCTTAGT+AGG - chr6_1:88138387-88138406 Msa0896920:CDS 45.0%
GCTCCATGAGATCCTTAGTA+GGG - chr6_1:88138388-88138407 Msa0896920:CDS 45.0%
ACTCCCTACTAAGGATCTCA+TGG + chr6_1:88138394-88138413 None:intergenic 45.0%
! TGGTAATCGACTCCCTACTA+AGG + chr6_1:88138403-88138422 None:intergenic 45.0%
CGGGTGCATTAGTTGCATAA+TGG + chr6_1:88138496-88138515 None:intergenic 45.0%
CAATAGGTATTCCATTGCGC+TGG + chr6_1:88138772-88138791 None:intergenic 45.0%
CAGCGCAATGGAATACCTAT+TGG - chr6_1:88138770-88138789 Msa0896920:CDS 45.0%
TGGAATACCTATTGGCCCAA+CGG - chr6_1:88138778-88138797 Msa0896920:CDS 45.0%
CTAGGTCATCTATTGAGGGA+CGG + chr6_1:88138895-88138914 None:intergenic 45.0%
TGTCATCTATTGAGGGACGA+AGG - chr6_1:88139117-88139136 Msa0896920:intron 45.0%
GTCATCTATTGAGGGACGAA+GGG - chr6_1:88139118-88139137 Msa0896920:intron 45.0%
CTTCAAGGGCTTTCTCAAGA+GGG + chr6_1:88139530-88139549 None:intergenic 45.0%
TCTTCAAGGGCTTTCTCAAG+AGG + chr6_1:88139531-88139550 None:intergenic 45.0%
! AGTGGAGGTGTAAATAGGGA+AGG - chr6_1:88136142-88136161 Msa0896920:intron 45.0%
CAACCTCATCAATGAGTTGC+TGG - chr6_1:88136180-88136199 Msa0896920:intron 45.0%
ATCAATGAGTTGCTGGCCAA+AGG - chr6_1:88136187-88136206 Msa0896920:intron 45.0%
GAGGAAGGTCCCAATGAAAA+AGG + chr6_1:88136315-88136334 None:intergenic 45.0%
CATCTTCAAGTGACTGAGGA+AGG + chr6_1:88136330-88136349 None:intergenic 45.0%
GGATCACACTGAATGAACCA+TGG - chr6_1:88136535-88136554 Msa0896920:intron 45.0%
AACATAAGCATGCTTGGCGA+AGG + chr6_1:88136562-88136581 None:intergenic 45.0%
GCCAAGCATGCTTATGTTGA+TGG - chr6_1:88136564-88136583 Msa0896920:CDS 45.0%
!! GGTGCAATTCAAGTTTTGCC+AGG + chr6_1:88136616-88136635 None:intergenic 45.0%
CAAAACTTGAATTGCACCGG+TGG - chr6_1:88136618-88136637 Msa0896920:CDS 45.0%
AGAATGTTAATCAGTGCCCC+GGG + chr6_1:88137398-88137417 None:intergenic 45.0%
GAGAATGTTAATCAGTGCCC+CGG + chr6_1:88137399-88137418 None:intergenic 45.0%
ACTAAGGATCTCATGGAGCT+TGG + chr6_1:88138387-88138406 None:intergenic 45.0%
AGCTCCATGAGATCCTTAGT+AGG - chr6_1:88138387-88138406 Msa0896920:CDS 45.0%
GCTCCATGAGATCCTTAGTA+GGG - chr6_1:88138388-88138407 Msa0896920:CDS 45.0%
ACTCCCTACTAAGGATCTCA+TGG + chr6_1:88138394-88138413 None:intergenic 45.0%
! TGGTAATCGACTCCCTACTA+AGG + chr6_1:88138403-88138422 None:intergenic 45.0%
CGGGTGCATTAGTTGCATAA+TGG + chr6_1:88138496-88138515 None:intergenic 45.0%
CAATAGGTATTCCATTGCGC+TGG + chr6_1:88138772-88138791 None:intergenic 45.0%
CAGCGCAATGGAATACCTAT+TGG - chr6_1:88138770-88138789 Msa0896920:CDS 45.0%
TGGAATACCTATTGGCCCAA+CGG - chr6_1:88138778-88138797 Msa0896920:CDS 45.0%
CTAGGTCATCTATTGAGGGA+CGG + chr6_1:88138895-88138914 None:intergenic 45.0%
TGTCATCTATTGAGGGACGA+AGG - chr6_1:88139117-88139136 Msa0896920:intron 45.0%
GTCATCTATTGAGGGACGAA+GGG - chr6_1:88139118-88139137 Msa0896920:intron 45.0%
CTTCAAGGGCTTTCTCAAGA+GGG + chr6_1:88139530-88139549 None:intergenic 45.0%
TCTTCAAGGGCTTTCTCAAG+AGG + chr6_1:88139531-88139550 None:intergenic 45.0%
!!! TTATGATATTTAATTATTTT+TGG + chr6_1:88136404-88136423 None:intergenic 5.0%
!! AAATAATAAATATAGTTTAT+TGG + chr6_1:88139340-88139359 None:intergenic 5.0%
!!! TTATGATATTTAATTATTTT+TGG + chr6_1:88136404-88136423 None:intergenic 5.0%
!! AAATAATAAATATAGTTTAT+TGG + chr6_1:88139340-88139359 None:intergenic 5.0%
GCAGAAGGAAAGCTTAGTGG+AGG - chr6_1:88136127-88136146 Msa0896920:intron 50.0%
TGGCCAGCAACTCATTGATG+AGG + chr6_1:88136186-88136205 None:intergenic 50.0%
TTCAGTGGCAGAATCTCCAC+CGG + chr6_1:88136637-88136656 None:intergenic 50.0%
AGATTCCTTAACCAGTGCCC+CGG + chr6_1:88137269-88137288 None:intergenic 50.0%
! TTGGTGCTTAACCAATGCCC+CGG - chr6_1:88137377-88137396 Msa0896920:intron 50.0%
GAATGTTAATCAGTGCCCCG+GGG + chr6_1:88137397-88137416 None:intergenic 50.0%
! TTTTTCACAGGCCAGCGCAA+TGG - chr6_1:88138758-88138777 Msa0896920:CDS 50.0%
GTCATCTATTGAGGGACGGA+GGG + chr6_1:88138891-88138910 None:intergenic 50.0%
TTACACATGCAGGCTGCTTC+AGG - chr6_1:88139222-88139241 Msa0896920:intron 50.0%
! GCTTTCTCAAGAGGGAGTGT+GGG + chr6_1:88139522-88139541 None:intergenic 50.0%
GCAGAAGGAAAGCTTAGTGG+AGG - chr6_1:88136127-88136146 Msa0896920:intron 50.0%
TGGCCAGCAACTCATTGATG+AGG + chr6_1:88136186-88136205 None:intergenic 50.0%
TTCAGTGGCAGAATCTCCAC+CGG + chr6_1:88136637-88136656 None:intergenic 50.0%
AGATTCCTTAACCAGTGCCC+CGG + chr6_1:88137269-88137288 None:intergenic 50.0%
! TTGGTGCTTAACCAATGCCC+CGG - chr6_1:88137377-88137396 Msa0896920:intron 50.0%
GAATGTTAATCAGTGCCCCG+GGG + chr6_1:88137397-88137416 None:intergenic 50.0%
! TTTTTCACAGGCCAGCGCAA+TGG - chr6_1:88138758-88138777 Msa0896920:CDS 50.0%
GTCATCTATTGAGGGACGGA+GGG + chr6_1:88138891-88138910 None:intergenic 50.0%
TTACACATGCAGGCTGCTTC+AGG - chr6_1:88139222-88139241 Msa0896920:intron 50.0%
! GCTTTCTCAAGAGGGAGTGT+GGG + chr6_1:88139522-88139541 None:intergenic 50.0%
! GTTGATGGAAGCTTCGCACC+TGG - chr6_1:88136579-88136598 Msa0896920:CDS 55.0%
TTCTTGTTAACCGGTGCCCC+CGG - chr6_1:88137247-88137266 Msa0896920:intron 55.0%
ATTCCTTAACCAGTGCCCCG+GGG + chr6_1:88137267-88137286 None:intergenic 55.0%
GATTCCTTAACCAGTGCCCC+GGG + chr6_1:88137268-88137287 None:intergenic 55.0%
TGGTGCTTAACCAATGCCCC+GGG - chr6_1:88137378-88137397 Msa0896920:intron 55.0%
GCACATACCGTTGGGCCAAT+AGG + chr6_1:88138788-88138807 None:intergenic 55.0%
GGTCATCTATTGAGGGACGG+AGG + chr6_1:88138892-88138911 None:intergenic 55.0%
ACATGCAGGCTGCTTCAGGA+TGG - chr6_1:88139226-88139245 Msa0896920:intron 55.0%
GGCTTTCTCAAGAGGGAGTG+TGG + chr6_1:88139523-88139542 None:intergenic 55.0%
! GTTGATGGAAGCTTCGCACC+TGG - chr6_1:88136579-88136598 Msa0896920:CDS 55.0%
TTCTTGTTAACCGGTGCCCC+CGG - chr6_1:88137247-88137266 Msa0896920:intron 55.0%
ATTCCTTAACCAGTGCCCCG+GGG + chr6_1:88137267-88137286 None:intergenic 55.0%
GATTCCTTAACCAGTGCCCC+GGG + chr6_1:88137268-88137287 None:intergenic 55.0%
TGGTGCTTAACCAATGCCCC+GGG - chr6_1:88137378-88137397 Msa0896920:intron 55.0%
GCACATACCGTTGGGCCAAT+AGG + chr6_1:88138788-88138807 None:intergenic 55.0%
GGTCATCTATTGAGGGACGG+AGG + chr6_1:88138892-88138911 None:intergenic 55.0%
ACATGCAGGCTGCTTCAGGA+TGG - chr6_1:88139226-88139245 Msa0896920:intron 55.0%
GGCTTTCTCAAGAGGGAGTG+TGG + chr6_1:88139523-88139542 None:intergenic 55.0%
CACCTGGACGATGTTCGTCC+TGG - chr6_1:88136595-88136614 Msa0896920:CDS 60.0%
TGCCAGGACGAACATCGTCC+AGG + chr6_1:88136600-88136619 None:intergenic 60.0%
TCTTGTTAACCGGTGCCCCC+GGG - chr6_1:88137248-88137267 Msa0896920:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + chr6_1:88137266-88137285 None:intergenic 60.0%
GGTGCTTAACCAATGCCCCG+GGG - chr6_1:88137379-88137398 Msa0896920:intron 60.0%
TAATCAGTGCCCCGGGGCAT+TGG + chr6_1:88137391-88137410 None:intergenic 60.0%
CACCTGGACGATGTTCGTCC+TGG - chr6_1:88136595-88136614 Msa0896920:CDS 60.0%
TGCCAGGACGAACATCGTCC+AGG + chr6_1:88136600-88136619 None:intergenic 60.0%
TCTTGTTAACCGGTGCCCCC+GGG - chr6_1:88137248-88137267 Msa0896920:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + chr6_1:88137266-88137285 None:intergenic 60.0%
GGTGCTTAACCAATGCCCCG+GGG - chr6_1:88137379-88137398 Msa0896920:intron 60.0%
TAATCAGTGCCCCGGGGCAT+TGG + chr6_1:88137391-88137410 None:intergenic 60.0%
GCATGCTTGGCGAAGGCCCA+TGG + chr6_1:88136555-88136574 None:intergenic 65.0%
CTTGTTAACCGGTGCCCCCG+GGG - chr6_1:88137249-88137268 Msa0896920:intron 65.0%
GCATGCTTGGCGAAGGCCCA+TGG + chr6_1:88136555-88136574 None:intergenic 65.0%
CTTGTTAACCGGTGCCCCCG+GGG - chr6_1:88137249-88137268 Msa0896920:intron 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr6_1:88137261-88137280 Msa0896920:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr6_1:88137261-88137280 Msa0896920:intron 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr6_1:88137260-88137279 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+CGG + chr6_1:88137260-88137279 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr6_1:88137255-88137274 Msa0896920:intron 80.0%
! AACCGGTGCCCCCGGGGCAC+TGG - chr6_1:88137255-88137274 Msa0896920:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 88135498 88139611 88135498 ID=Msa0896920;Name=Msa0896920
chr6_1 mRNA 88135498 88139611 88135498 ID=Msa0896920-mRNA-1;Parent=Msa0896920;Name=Msa0896920-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|9|0|354
chr6_1 exon 88139507 88139611 88139507 ID=Msa0896920-mRNA-1:exon:14889;Parent=Msa0896920-mRNA-1
chr6_1 exon 88139309 88139384 88139309 ID=Msa0896920-mRNA-1:exon:14888;Parent=Msa0896920-mRNA-1
chr6_1 exon 88138901 88138978 88138901 ID=Msa0896920-mRNA-1:exon:14887;Parent=Msa0896920-mRNA-1
chr6_1 exon 88138729 88138816 88138729 ID=Msa0896920-mRNA-1:exon:14886;Parent=Msa0896920-mRNA-1
chr6_1 exon 88138381 88138636 88138381 ID=Msa0896920-mRNA-1:exon:14885;Parent=Msa0896920-mRNA-1
chr6_1 exon 88136537 88136756 88136537 ID=Msa0896920-mRNA-1:exon:14884;Parent=Msa0896920-mRNA-1
chr6_1 exon 88136310 88136341 88136310 ID=Msa0896920-mRNA-1:exon:14883;Parent=Msa0896920-mRNA-1
chr6_1 exon 88135779 88135875 88135779 ID=Msa0896920-mRNA-1:exon:14882;Parent=Msa0896920-mRNA-1
chr6_1 exon 88135498 88135610 88135498 ID=Msa0896920-mRNA-1:exon:14881;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88139507 88139611 88139507 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88139309 88139384 88139309 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88138901 88138978 88138901 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88138729 88138816 88138729 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88138381 88138636 88138381 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88136537 88136756 88136537 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88136310 88136341 88136310 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88135779 88135875 88135779 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
chr6_1 CDS 88135498 88135610 88135498 ID=Msa0896920-mRNA-1:cds;Parent=Msa0896920-mRNA-1
Gene Sequence

>Msa0896920

ATGTCCGGTTCAAAGCACCATCACATTCTACTGCTAAACTTGTCAGATAAAATAAAGGACAGAAGTAATGGAGACATAGCCGTTGATGAATACCATCGTTATAAGGAAGATGTTGAGATGATCAAGGACATCAATATGGATGCTTATAGATTTTCCATCTCTTGGTCCAGAATACTTCCAAAAGGAAAGCTTAGTGGAGGTGTAAATAGGGAAGGAATTAAGTATTACAACAACCTCATCAATGAGTTGCTGGCCAAAGGTCTTCAACCTTTTGTTACCCTTTTTCATTGGGACCTTCCTCAGTCACTTGAAGATGAATATAATGGCTTTTTAAGTCCAAATATAGTGAATGATTTTCGAGACTATGCAGAGCTTTGCTTTAAAGAATTTGGTGATAGAGTAAAGAATTGGATCACACTGAATGAACCATGGGCCTTCGCCAAGCATGCTTATGTTGATGGAAGCTTCGCACCTGGACGATGTTCGTCCTGGCAAAACTTGAATTGCACCGGTGGAGATTCTGCCACTGAACCCTATATAGTGACTCATAATCAAATACTTGCTCATGCATCTGCTGTCAATGTCTACAAAACTAAGTATCAGGTATATGGATCCATTGACAATTGGAGACTATCCAAGCTCCATGAGATCCTTAGTAGGGAGTCGATTACCAAAATTCTCAAAGTATCAAGCAAAGCTTGTAAGAGGTCCTTTGATTTTATTGGATTAAACTATTACACTTCCCATTATGCAACTAATGCACCCGAGTTAAGTGAAGTCATCAAGCCCAGTTACAACACAGATGCACTTGTTAGTTTTACAAGCCAGCGCAATGGAATACCTATTGGCCCAACGGCTGCTTCAGGATGGTTATCAATTTATCCAAAGGGTATTCACGACTTGTTGATCTACACTAAAATAAAGTACAACAATCCATTTATGACTGAAAATGGTATGGATGACTTTAATGATCCCACACTCCCTCTTGAGAAAGCCCTTGAAGATACACAAAGGATTGATTACTATTATGATCATCTCTACTATCTTCAAACTGCAATAAAGTAA

Protein sequence

>Msa0896920

MSGSKHHHILLLNLSDKIKDRSNGDIAVDEYHRYKEDVEMIKDINMDAYRFSISWSRILPKGKLSGGVNREGIKYYNNLINELLAKGLQPFVTLFHWDLPQSLEDEYNGFLSPNIVNDFRDYAELCFKEFGDRVKNWITLNEPWAFAKHAYVDGSFAPGRCSSWQNLNCTGGDSATEPYIVTHNQILAHASAVNVYKTKYQVYGSIDNWRLSKLHEILSRESITKILKVSSKACKRSFDFIGLNYYTSHYATNAPELSEVIKPSYNTDALVSFTSQRNGIPIGPTAASGWLSIYPKGIHDLLIYTKIKYNNPFMTENGMDDFNDPTLPLEKALEDTQRIDYYYDHLYYLQTAIK*