AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0668220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668220 MtrunA17_Chr4g0007031 97.814 183 3 1 6 188 40 221 7.09e-129 361
Msa0668220 MtrunA17_Chr5g0419971 97.814 183 3 1 6 188 40 221 7.09e-129 361
Msa0668220 MtrunA17_Chr5g0419981 97.814 183 3 1 6 188 40 221 7.09e-129 361
Msa0668220 MtrunA17_Chr4g0007051 97.268 183 4 1 6 188 40 221 2.42e-128 359
Msa0668220 MtrunA17_Chr4g0007041 96.721 183 5 1 6 188 40 221 1.97e-127 357
Msa0668220 MtrunA17_Chr2g0285871 95.628 183 7 1 6 188 40 221 6.79e-127 356
Msa0668220 MtrunA17_Chr1g0189841 80.108 186 35 2 4 188 38 222 4.04e-105 301
Msa0668220 MtrunA17_Chr6g0449771 79.781 183 35 1 6 188 40 220 5.85e-101 290
Msa0668220 MtrunA17_Chr6g0449731 79.670 182 35 1 6 187 40 219 1.71e-100 289
Msa0668220 MtrunA17_Chr6g0449751 78.378 185 38 1 4 188 38 220 1.73e-100 289
Msa0668220 MtrunA17_Chr6g0449761 79.330 179 35 1 6 184 40 216 8.93e-98 283
Msa0668220 MtrunA17_Chr6g0449781 67.213 183 57 2 6 188 40 219 8.43e-78 231
Msa0668220 MtrunA17_Chr2g0292831 64.000 175 57 3 11 182 40 211 2.02e-74 223
Msa0668220 MtrunA17_Chr1g0156131 65.698 172 55 2 13 182 39 208 3.57e-74 222
Msa0668220 MtrunA17_Chr6g0449791 63.529 170 61 1 6 175 40 208 4.81e-73 219
Msa0668220 MtrunA17_Chr2g0292861 63.793 174 56 4 13 182 7 177 2.81e-72 216
Msa0668220 MtrunA17_Chr2g0292901 63.429 175 58 3 11 182 41 212 4.98e-72 216
Msa0668220 MtrunA17_Chr2g0292841 63.218 174 57 4 13 182 7 177 2.04e-70 211
Msa0668220 MtrunA17_Chr1g0193671 47.283 184 91 2 1 182 34 213 1.03e-52 167
Msa0668220 MtrunA17_Chr7g0271211 47.802 182 89 2 3 182 33 210 1.30e-48 157
Msa0668220 MtrunA17_Chr2g0292911 66.116 121 35 3 13 130 7 124 2.25e-48 154
Msa0668220 MtrunA17_Chr1g0193421 46.154 182 92 2 3 182 37 214 4.07e-48 156
Msa0668220 MtrunA17_Chr5g0414971 45.810 179 90 3 7 182 44 218 1.47e-43 144
Msa0668220 MtrunA17_Chr2g0300561 45.665 173 86 3 10 180 37 203 3.78e-41 138
Msa0668220 MtrunA17_Chr1g0210761 43.333 180 77 5 13 182 42 206 1.08e-39 134
Msa0668220 MtrunA17_Chr1g0178711 38.596 171 98 3 13 182 56 220 4.07e-36 125
Msa0668220 MtrunA17_Chr2g0300581 40.805 174 95 3 10 181 37 204 9.10e-36 124
Msa0668220 MtrunA17_Chr2g0300591 41.040 173 94 3 10 180 37 203 1.09e-35 124
Msa0668220 MtrunA17_Chr8g0344021 44.595 148 75 2 9 154 39 181 2.16e-33 118
Msa0668220 MtrunA17_Chr8g0335851 43.137 153 80 3 6 156 44 191 1.66e-32 116
Msa0668220 MtrunA17_Chr8g0343911 40.000 175 97 4 9 181 34 202 7.14e-32 114
Msa0668220 MtrunA17_Chr8g0343934 41.727 139 75 2 9 146 37 170 1.47e-29 108
Msa0668220 MtrunA17_Chr3g0084531 41.401 157 85 3 9 164 37 187 1.69e-29 108
Msa0668220 MtrunA17_Chr8g0343954 36.571 175 103 3 9 182 37 204 2.05e-29 107
Msa0668220 MtrunA17_Chr2g0321581 43.182 132 68 3 51 181 77 202 8.15e-29 106
Msa0668220 MtrunA17_Chr2g0321591 42.424 132 69 3 51 181 77 202 2.91e-28 104
Msa0668220 MtrunA17_Chr2g0321601 42.424 132 69 3 51 181 76 201 3.41e-28 104
Msa0668220 MtrunA17_Chr8g0344051 42.754 138 71 2 9 143 38 170 8.81e-28 103
Msa0668220 MtrunA17_Chr4g0026201 42.748 131 68 3 52 181 79 203 1.57e-27 103
Msa0668220 MtrunA17_Chr4g0026191 42.748 131 68 3 52 181 79 203 2.56e-27 102
Msa0668220 MtrunA17_Chr2g0297231 38.462 169 95 3 9 173 37 200 3.10e-27 102
Msa0668220 MtrunA17_Chr3g0130241 41.958 143 76 3 6 146 107 244 3.28e-27 103
Msa0668220 MtrunA17_Chr3g0084511 39.490 157 88 3 9 164 36 186 5.30e-27 101
Msa0668220 MtrunA17_Chr2g0297241 38.462 169 95 3 9 173 37 200 5.79e-27 101
Msa0668220 MtrunA17_Chr2g0313961 38.462 169 95 3 9 173 37 200 6.44e-27 101
Msa0668220 MtrunA17_Chr2g0302171 38.824 170 93 4 9 173 37 200 7.32e-27 101
Msa0668220 MtrunA17_Chr8g0343961 35.429 175 105 3 9 182 37 204 9.26e-27 101
Msa0668220 MtrunA17_Chr3g0084521 39.490 157 88 3 9 164 36 186 1.37e-26 100
Msa0668220 MtrunA17_Chr4g0003361 36.571 175 102 4 9 182 34 200 3.03e-25 97.1
Msa0668220 MtrunA17_Chr2g0301611 38.686 137 78 2 9 144 37 168 5.37e-25 96.7
Msa0668220 MtrunA17_Chr8g0344041 36.471 170 98 3 9 173 40 204 6.67e-25 96.3
Msa0668220 MtrunA17_Chr2g0302541 37.870 169 96 3 9 173 37 200 1.28e-24 95.5
Msa0668220 MtrunA17_Chr5g0411961 38.571 140 80 2 8 146 36 170 7.33e-24 93.6
Msa0668220 MtrunA17_Chr7g0217811 37.278 169 97 3 9 173 37 200 2.05e-23 92.4
Msa0668220 MtrunA17_Chr4g0012651 37.500 168 96 3 10 173 38 200 2.59e-23 92.0
Msa0668220 MtrunA17_Chr8g0343921 35.882 170 99 5 13 180 39 200 2.94e-23 92.0
Msa0668220 MtrunA17_Chr8g0344031 36.000 175 104 3 9 182 39 206 5.38e-23 91.3
Msa0668220 MtrunA17_Chr3g0115141 36.095 169 96 4 9 173 41 201 8.49e-23 90.9
Msa0668220 MtrunA17_Chr2g0286171 33.143 175 106 4 9 182 43 207 8.69e-22 88.2
Msa0668220 MtrunA17_Chr2g0292881 66.102 59 18 1 59 117 1 57 1.09e-20 80.9
Msa0668220 MtrunA17_Chr3g0084551 32.515 163 95 6 9 169 37 186 7.96e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0668220 AT3G05950.1 66.316 190 59 3 3 188 40 228 2.41e-81 241
Msa0668220 AT5G39160.1 65.363 179 59 2 6 182 41 218 4.92e-77 230
Msa0668220 AT5G39190.1 65.363 179 59 2 6 182 41 218 7.29e-77 229
Msa0668220 AT5G39130.1 64.246 179 61 2 6 182 41 218 2.62e-76 228
Msa0668220 AT5G39110.1 64.246 179 61 2 6 182 42 219 7.00e-76 227
Msa0668220 AT5G39150.1 64.246 179 61 2 6 182 41 218 9.41e-76 226
Msa0668220 AT5G39120.1 64.246 179 61 2 6 182 41 218 1.21e-75 226
Msa0668220 AT5G39180.1 64.246 179 61 2 6 182 41 218 1.73e-75 226
Msa0668220 AT5G39160.3 64.571 175 59 2 10 182 41 214 8.87e-74 221
Msa0668220 AT3G04200.1 62.431 181 65 3 2 180 40 219 8.20e-72 217
Msa0668220 AT4G14630.1 63.128 179 63 2 6 182 44 221 7.15e-71 214
Msa0668220 AT5G38940.1 62.570 179 63 2 6 182 44 220 1.42e-70 213
Msa0668220 AT5G38940.2 62.570 179 63 2 6 182 68 244 2.19e-70 214
Msa0668220 AT5G38930.1 63.687 179 61 2 6 182 44 220 3.84e-70 213
Msa0668220 AT5G39160.2 67.105 152 49 1 31 182 46 196 1.23e-67 205
Msa0668220 AT5G39190.2 67.105 152 49 1 31 182 46 196 1.44e-67 205
Msa0668220 AT5G38960.1 59.016 183 70 3 3 182 41 221 1.87e-66 203
Msa0668220 AT5G38910.1 61.667 180 63 3 6 182 42 218 2.11e-65 200
Msa0668220 AT3G04150.2 56.354 181 76 2 3 181 53 232 5.23e-63 195
Msa0668220 AT3G04150.1 55.801 181 77 2 3 181 40 219 6.52e-63 194
Msa0668220 AT3G04190.1 55.249 181 78 2 2 180 39 218 9.05e-63 194
Msa0668220 AT3G04170.1 54.396 182 77 3 2 181 39 216 1.50e-60 188
Msa0668220 AT3G04180.1 53.039 181 82 2 2 180 39 218 3.46e-59 184
Msa0668220 AT1G02335.1 46.328 177 89 2 8 182 42 214 6.62e-49 158
Msa0668220 AT1G09560.1 46.409 181 91 2 4 182 38 214 6.69e-49 158
Msa0668220 AT5G26700.1 47.253 182 83 4 3 180 34 206 4.19e-48 156
Msa0668220 AT3G62020.1 45.652 184 93 3 2 182 35 214 3.62e-47 154
Msa0668220 AT3G62020.2 46.629 178 88 3 8 182 12 185 5.00e-47 152
Msa0668220 AT3G05930.1 49.697 165 76 2 8 169 41 201 5.08e-47 153
Msa0668220 AT1G18970.1 46.328 177 87 3 8 182 47 217 3.40e-45 149
Msa0668220 AT1G18980.1 46.893 177 86 3 8 182 47 217 2.66e-44 147
Msa0668220 AT5G38910.2 47.778 180 51 3 6 182 42 181 2.99e-41 137
Msa0668220 AT1G10460.1 41.436 181 98 4 5 181 37 213 2.98e-40 136
Msa0668220 AT3G10080.1 40.351 171 95 3 13 182 54 218 1.52e-39 134
Msa0668220 AT3G10080.2 40.351 171 95 3 13 182 125 289 5.17e-39 135
Msa0668220 AT5G61750.1 44.805 154 79 2 2 153 33 182 5.01e-38 130
Msa0668220 AT5G20630.1 42.012 169 91 4 9 175 37 200 1.08e-34 122
Msa0668220 AT1G72610.1 41.040 173 94 5 10 180 35 201 8.76e-32 114
Msa0668220 AT1G74820.1 38.068 176 101 3 9 182 55 224 6.55e-30 110
Msa0668220 AT5G38950.1 54.167 72 33 0 112 183 2 73 4.38e-19 78.6

Find 44 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACTGAATGTTGGATA+TGG 0.274546 4_4:+9088986 Msa0668220:CDS
TAACACACTTGGTATATCTT+TGG 0.283641 4_4:+9088772 Msa0668220:CDS
TGAAAATGAATAAGACCAAT+TGG 0.356438 4_4:-9088968 None:intergenic
GAGTGCCTTCAAGTACTATA+AGG 0.386700 4_4:-9088859 None:intergenic
GGCAACGCTGTTGCTATTGC+TGG 0.409649 4_4:+9089007 Msa0668220:CDS
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4_4:-9088826 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4_4:+9088953 Msa0668220:CDS
TAATTTGCAGTATTCGTGAA+TGG 0.437869 4_4:+9088623 Msa0668220:intron
TTTATCCACTTGAAAAGCCT+TGG 0.447465 4_4:-9089113 None:intergenic
ATTATCTTCAAAAGCAGTCT+TGG 0.451856 4_4:+9089146 Msa0668220:CDS
CTTGAAGGCACTCTTTATGT+TGG 0.454430 4_4:+9088869 Msa0668220:CDS
TTGAGAGCCCAAGGCATTTG+AGG 0.458344 4_4:-9088714 None:intergenic
TGGGAATGCCTCAAATGCCT+TGG 0.463957 4_4:+9088706 Msa0668220:CDS
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4_4:-9088842 None:intergenic
GAGATCCTTATAGTACTTGA+AGG 0.469573 4_4:+9088854 Msa0668220:CDS
TTTGCAACGGTGATAACTCC+TGG 0.470922 4_4:-9089046 None:intergenic
AGTAGTTGGTCTACGGCGAC+TGG 0.473050 4_4:-9088743 None:intergenic
GGGAATGCCTCAAATGCCTT+GGG 0.473412 4_4:+9088707 Msa0668220:CDS
AATTTGCAGTATTCGTGAAT+GGG 0.491761 4_4:+9088624 Msa0668220:intron
TCTTCAGCTTTAACAAGCGC+GGG 0.492568 4_4:-9088662 None:intergenic
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4_4:-9088827 None:intergenic
AATCACATGCAGTCATCAAA+AGG 0.509741 4_4:+9087482 None:intergenic
GAAAATGAATAAGACCAATT+GGG 0.510497 4_4:-9088967 None:intergenic
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4_4:-9089088 None:intergenic
ATCTTCAGCTTTAACAAGCG+CGG 0.529505 4_4:-9088663 None:intergenic
CTACTCGGACTTAACACACT+TGG 0.532550 4_4:+9088761 Msa0668220:CDS
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4_4:-9088812 None:intergenic
GTGTGTTAAGTCCGAGTAGT+TGG 0.537168 4_4:-9088757 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4_4:+9088928 Msa0668220:CDS
ATCACCCTTGTTGAGCACCT+TGG 0.567836 4_4:-9088933 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4_4:-9088841 None:intergenic
GGACTTAGCAGTCAAAATCC+AGG 0.578792 4_4:+9089028 Msa0668220:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4_4:-9088838 None:intergenic
TTTAAACAAAGCATTTGCAA+CGG 0.590900 4_4:-9089059 None:intergenic
TGGAGTCACTTGAGAGCCCA+AGG 0.596050 4_4:-9088723 None:intergenic
AGCCTTGGTAAGAACTTCGT+CGG 0.604448 4_4:-9089098 None:intergenic
AAGTCCGAGTAGTTGGTCTA+CGG 0.616704 4_4:-9088750 None:intergenic
TTCCGACGAAGTTCTTACCA+AGG 0.636128 4_4:+9089096 Msa0668220:CDS
GTCGCCGTAGACCAACTACT+CGG 0.640604 4_4:+9088746 Msa0668220:CDS
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4_4:-9088830 None:intergenic
TTTACCAAGGTGCTCAACAA+GGG 0.659466 4_4:+9088929 Msa0668220:CDS
CCACCTCACATCCACCCTAG+AGG 0.660499 4_4:+9088827 Msa0668220:CDS
CTTCAGCTTTAACAAGCGCG+GGG 0.662073 4_4:-9088661 None:intergenic
CAATAATCGTCTCTTTACCA+AGG 0.672342 4_4:+9088916 Msa0668220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAACAATATATTGT+TGG - chr4_4:9087765-9087784 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGAACAA+AGG + chr4_4:9087824-9087843 Msa0668220:intron 10.0%
!! AATTATAAACAATATATTGT+TGG - chr4_4:9087765-9087784 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGAACAA+AGG + chr4_4:9087824-9087843 Msa0668220:intron 10.0%
!! TACGTAAATGTAATTTAAAA+TGG - chr4_4:9087600-9087619 None:intergenic 15.0%
!!! TTGTTAATTATTTGTTGAAA+GGG + chr4_4:9087646-9087665 Msa0668220:intron 15.0%
!! AGATAATTGAAATTCATTTA+AGG + chr4_4:9087880-9087899 Msa0668220:intron 15.0%
!! AATGTTCATGTATTAAATTT+GGG - chr4_4:9088042-9088061 None:intergenic 15.0%
!! TAATGTTCATGTATTAAATT+TGG - chr4_4:9088043-9088062 None:intergenic 15.0%
!!! TCTCAATAAATATATTTTGA+TGG + chr4_4:9088530-9088549 Msa0668220:intron 15.0%
!! TACGTAAATGTAATTTAAAA+TGG - chr4_4:9087600-9087619 None:intergenic 15.0%
!!! TTGTTAATTATTTGTTGAAA+GGG + chr4_4:9087646-9087665 Msa0668220:intron 15.0%
!! AGATAATTGAAATTCATTTA+AGG + chr4_4:9087880-9087899 Msa0668220:intron 15.0%
!! AATGTTCATGTATTAAATTT+GGG - chr4_4:9088042-9088061 None:intergenic 15.0%
!! TAATGTTCATGTATTAAATT+TGG - chr4_4:9088043-9088062 None:intergenic 15.0%
!!! TCTCAATAAATATATTTTGA+TGG + chr4_4:9088530-9088549 Msa0668220:intron 15.0%
!!! AAACTGATCATATTTTGATT+TGG + chr4_4:9087562-9087581 Msa0668220:intron 20.0%
!!! AATGTAATTTAAAATGGCAA+AGG - chr4_4:9087594-9087613 None:intergenic 20.0%
!! TCAACAAATAATTAACAAGA+GGG - chr4_4:9087644-9087663 None:intergenic 20.0%
!! TTCAACAAATAATTAACAAG+AGG - chr4_4:9087645-9087664 None:intergenic 20.0%
!!! CTTGTTAATTATTTGTTGAA+AGG + chr4_4:9087645-9087664 Msa0668220:intron 20.0%
!! TGGAAAATATTTGAGTAATT+CGG - chr4_4:9087735-9087754 None:intergenic 20.0%
!! TATAAACAATATATTGTTGG+TGG - chr4_4:9087762-9087781 None:intergenic 20.0%
!! GGTAAAGACAAATTTAAAAA+TGG + chr4_4:9088086-9088105 Msa0668220:intron 20.0%
!!! AAACTGATCATATTTTGATT+TGG + chr4_4:9087562-9087581 Msa0668220:intron 20.0%
!!! AATGTAATTTAAAATGGCAA+AGG - chr4_4:9087594-9087613 None:intergenic 20.0%
!! TCAACAAATAATTAACAAGA+GGG - chr4_4:9087644-9087663 None:intergenic 20.0%
!! TTCAACAAATAATTAACAAG+AGG - chr4_4:9087645-9087664 None:intergenic 20.0%
!!! CTTGTTAATTATTTGTTGAA+AGG + chr4_4:9087645-9087664 Msa0668220:intron 20.0%
!! TGGAAAATATTTGAGTAATT+CGG - chr4_4:9087735-9087754 None:intergenic 20.0%
!! TATAAACAATATATTGTTGG+TGG - chr4_4:9087762-9087781 None:intergenic 20.0%
!! GGTAAAGACAAATTTAAAAA+TGG + chr4_4:9088086-9088105 Msa0668220:intron 20.0%
!! AATATATTGTTGGTGGAATA+TGG - chr4_4:9087755-9087774 None:intergenic 25.0%
! AGTATGGCAAAATATATGTT+AGG - chr4_4:9087917-9087936 None:intergenic 25.0%
! AAAATTACCATTAACAGAAC+AGG + chr4_4:9088064-9088083 Msa0668220:intron 25.0%
! AAATTACCATTAACAGAACA+GGG + chr4_4:9088065-9088084 Msa0668220:intron 25.0%
!! TTTAAAAATGGTCTTGACTT+TGG + chr4_4:9088098-9088117 Msa0668220:intron 25.0%
! TACATGTAGTTGTTAAAGAA+TGG + chr4_4:9088136-9088155 Msa0668220:intron 25.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr4_4:9088453-9088472 None:intergenic 25.0%
! CAAAACGTTTGATATTTGTA+AGG - chr4_4:9088503-9088522 None:intergenic 25.0%
!! CTTACAAATATCAAACGTTT+TGG + chr4_4:9088501-9088520 Msa0668220:intron 25.0%
!!! ATATTTTGATGGTTTTAGCT+AGG + chr4_4:9088541-9088560 Msa0668220:intron 25.0%
! GAAAATGAATAAGACCAATT+GGG - chr4_4:9088970-9088989 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr4_4:9088971-9088990 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG + chr4_4:9088980-9088999 Msa0668220:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr4_4:9089062-9089081 None:intergenic 25.0%
!! AATATATTGTTGGTGGAATA+TGG - chr4_4:9087755-9087774 None:intergenic 25.0%
! AGTATGGCAAAATATATGTT+AGG - chr4_4:9087917-9087936 None:intergenic 25.0%
! AAAATTACCATTAACAGAAC+AGG + chr4_4:9088064-9088083 Msa0668220:intron 25.0%
! AAATTACCATTAACAGAACA+GGG + chr4_4:9088065-9088084 Msa0668220:intron 25.0%
!! TTTAAAAATGGTCTTGACTT+TGG + chr4_4:9088098-9088117 Msa0668220:intron 25.0%
! TACATGTAGTTGTTAAAGAA+TGG + chr4_4:9088136-9088155 Msa0668220:intron 25.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr4_4:9088453-9088472 None:intergenic 25.0%
! CAAAACGTTTGATATTTGTA+AGG - chr4_4:9088503-9088522 None:intergenic 25.0%
!! CTTACAAATATCAAACGTTT+TGG + chr4_4:9088501-9088520 Msa0668220:intron 25.0%
!!! ATATTTTGATGGTTTTAGCT+AGG + chr4_4:9088541-9088560 Msa0668220:intron 25.0%
! GAAAATGAATAAGACCAATT+GGG - chr4_4:9088970-9088989 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr4_4:9088971-9088990 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+TGG + chr4_4:9088980-9088999 Msa0668220:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr4_4:9089062-9089081 None:intergenic 25.0%
TTTAGACTTTGTCTTAGTTC+TGG - chr4_4:9087545-9087564 None:intergenic 30.0%
TTGAAAGGGTAAATCAGAAA+CGG + chr4_4:9087660-9087679 Msa0668220:intron 30.0%
!!! GTGTGAACGTATTTTAGTAA+TGG + chr4_4:9087699-9087718 Msa0668220:intron 30.0%
!! TTAGTCTCTGATTTGTTTAC+AGG - chr4_4:9087853-9087872 None:intergenic 30.0%
!! TTTGTTTCAAGTTCGATCTT+CGG - chr4_4:9087946-9087965 None:intergenic 30.0%
AGATCGAACTTGAAACAAAT+TGG + chr4_4:9087947-9087966 Msa0668220:intron 30.0%
ATATACATACCACCATCTTT+GGG - chr4_4:9088427-9088446 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr4_4:9088428-9088447 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr4_4:9088623-9088642 Msa0668220:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr4_4:9088624-9088643 Msa0668220:intron 30.0%
TAACACACTTGGTATATCTT+TGG + chr4_4:9088772-9088791 Msa0668220:CDS 30.0%
TTTCAACTGAATGTTGGATA+TGG + chr4_4:9088986-9089005 Msa0668220:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr4_4:9089146-9089165 Msa0668220:CDS 30.0%
TTTAGACTTTGTCTTAGTTC+TGG - chr4_4:9087545-9087564 None:intergenic 30.0%
TTGAAAGGGTAAATCAGAAA+CGG + chr4_4:9087660-9087679 Msa0668220:intron 30.0%
!!! GTGTGAACGTATTTTAGTAA+TGG + chr4_4:9087699-9087718 Msa0668220:intron 30.0%
!! TTAGTCTCTGATTTGTTTAC+AGG - chr4_4:9087853-9087872 None:intergenic 30.0%
!! TTTGTTTCAAGTTCGATCTT+CGG - chr4_4:9087946-9087965 None:intergenic 30.0%
AGATCGAACTTGAAACAAAT+TGG + chr4_4:9087947-9087966 Msa0668220:intron 30.0%
ATATACATACCACCATCTTT+GGG - chr4_4:9088427-9088446 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr4_4:9088428-9088447 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr4_4:9088623-9088642 Msa0668220:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr4_4:9088624-9088643 Msa0668220:intron 30.0%
TAACACACTTGGTATATCTT+TGG + chr4_4:9088772-9088791 Msa0668220:CDS 30.0%
TTTCAACTGAATGTTGGATA+TGG + chr4_4:9088986-9089005 Msa0668220:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr4_4:9089146-9089165 Msa0668220:CDS 30.0%
GGCAAAATATATGTTAGGAG+AGG - chr4_4:9087912-9087931 None:intergenic 35.0%
TCTTTACCCTGTTCTGTTAA+TGG - chr4_4:9088074-9088093 None:intergenic 35.0%
! AAATGGTCTTGACTTTGGTT+TGG + chr4_4:9088103-9088122 Msa0668220:intron 35.0%
ATACTTCCTTGTTAGCATCT+TGG + chr4_4:9088330-9088349 Msa0668220:intron 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr4_4:9088399-9088418 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr4_4:9088426-9088445 None:intergenic 35.0%
!! TTTTTCAAACACGTTGAAGC+TGG + chr4_4:9088686-9088705 Msa0668220:CDS 35.0%
! TTTTCAAACACGTTGAAGCT+GGG + chr4_4:9088687-9088706 Msa0668220:CDS 35.0%
GAGATCCTTATAGTACTTGA+AGG + chr4_4:9088854-9088873 Msa0668220:CDS 35.0%
CAATAATCGTCTCTTTACCA+AGG + chr4_4:9088916-9088935 Msa0668220:CDS 35.0%
TTTATCCACTTGAAAAGCCT+TGG - chr4_4:9089116-9089135 None:intergenic 35.0%
GGCAAAATATATGTTAGGAG+AGG - chr4_4:9087912-9087931 None:intergenic 35.0%
TCTTTACCCTGTTCTGTTAA+TGG - chr4_4:9088074-9088093 None:intergenic 35.0%
! AAATGGTCTTGACTTTGGTT+TGG + chr4_4:9088103-9088122 Msa0668220:intron 35.0%
ATACTTCCTTGTTAGCATCT+TGG + chr4_4:9088330-9088349 Msa0668220:intron 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr4_4:9088399-9088418 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr4_4:9088426-9088445 None:intergenic 35.0%
!! TTTTTCAAACACGTTGAAGC+TGG + chr4_4:9088686-9088705 Msa0668220:CDS 35.0%
! TTTTCAAACACGTTGAAGCT+GGG + chr4_4:9088687-9088706 Msa0668220:CDS 35.0%
GAGATCCTTATAGTACTTGA+AGG + chr4_4:9088854-9088873 Msa0668220:CDS 35.0%
CAATAATCGTCTCTTTACCA+AGG + chr4_4:9088916-9088935 Msa0668220:CDS 35.0%
TTTATCCACTTGAAAAGCCT+TGG - chr4_4:9089116-9089135 None:intergenic 35.0%
TCACTTGTGTCATATCGTGT+TGG + chr4_4:9087990-9088009 Msa0668220:intron 40.0%
! AGTACTGAGTTGCAAGATGA+AGG + chr4_4:9088303-9088322 Msa0668220:intron 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr4_4:9088393-9088412 None:intergenic 40.0%
! ATCTTCAGCTTTAACAAGCG+CGG - chr4_4:9088666-9088685 None:intergenic 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr4_4:9088844-9088863 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr4_4:9088845-9088864 None:intergenic 40.0%
GAGTGCCTTCAAGTACTATA+AGG - chr4_4:9088862-9088881 None:intergenic 40.0%
!! CTTGAAGGCACTCTTTATGT+TGG + chr4_4:9088869-9088888 Msa0668220:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr4_4:9088929-9088948 Msa0668220:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr4_4:9088953-9088972 Msa0668220:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr4_4:9089091-9089110 None:intergenic 40.0%
!! TCTTACCAAGGCTTTTCAAG+TGG + chr4_4:9089108-9089127 Msa0668220:CDS 40.0%
TCACTTGTGTCATATCGTGT+TGG + chr4_4:9087990-9088009 Msa0668220:intron 40.0%
! AGTACTGAGTTGCAAGATGA+AGG + chr4_4:9088303-9088322 Msa0668220:intron 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr4_4:9088393-9088412 None:intergenic 40.0%
! ATCTTCAGCTTTAACAAGCG+CGG - chr4_4:9088666-9088685 None:intergenic 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr4_4:9088844-9088863 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr4_4:9088845-9088864 None:intergenic 40.0%
GAGTGCCTTCAAGTACTATA+AGG - chr4_4:9088862-9088881 None:intergenic 40.0%
!! CTTGAAGGCACTCTTTATGT+TGG + chr4_4:9088869-9088888 Msa0668220:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr4_4:9088929-9088948 Msa0668220:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr4_4:9088953-9088972 Msa0668220:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr4_4:9089091-9089110 None:intergenic 40.0%
!! TCTTACCAAGGCTTTTCAAG+TGG + chr4_4:9089108-9089127 Msa0668220:CDS 40.0%
CGATCTTCGGCATATGAGTA+TGG - chr4_4:9087933-9087952 None:intergenic 45.0%
CCAAAGCCAAGATGCTAACA+AGG - chr4_4:9088339-9088358 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr4_4:9088336-9088355 Msa0668220:intron 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr4_4:9088394-9088413 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr4_4:9088412-9088431 Msa0668220:intron 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr4_4:9088415-9088434 Msa0668220:intron 45.0%
! TCTTCAGCTTTAACAAGCGC+GGG - chr4_4:9088665-9088684 None:intergenic 45.0%
! AAGTCCGAGTAGTTGGTCTA+CGG - chr4_4:9088753-9088772 None:intergenic 45.0%
GTGTGTTAAGTCCGAGTAGT+TGG - chr4_4:9088760-9088779 None:intergenic 45.0%
CTACTCGGACTTAACACACT+TGG + chr4_4:9088761-9088780 Msa0668220:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr4_4:9088815-9088834 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr4_4:9088928-9088947 Msa0668220:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG + chr4_4:9089028-9089047 Msa0668220:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr4_4:9089049-9089068 None:intergenic 45.0%
TTCCGACGAAGTTCTTACCA+AGG + chr4_4:9089096-9089115 Msa0668220:CDS 45.0%
AGCCTTGGTAAGAACTTCGT+CGG - chr4_4:9089101-9089120 None:intergenic 45.0%
CGATCTTCGGCATATGAGTA+TGG - chr4_4:9087933-9087952 None:intergenic 45.0%
CCAAAGCCAAGATGCTAACA+AGG - chr4_4:9088339-9088358 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr4_4:9088336-9088355 Msa0668220:intron 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr4_4:9088394-9088413 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr4_4:9088412-9088431 Msa0668220:intron 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr4_4:9088415-9088434 Msa0668220:intron 45.0%
! TCTTCAGCTTTAACAAGCGC+GGG - chr4_4:9088665-9088684 None:intergenic 45.0%
! AAGTCCGAGTAGTTGGTCTA+CGG - chr4_4:9088753-9088772 None:intergenic 45.0%
GTGTGTTAAGTCCGAGTAGT+TGG - chr4_4:9088760-9088779 None:intergenic 45.0%
CTACTCGGACTTAACACACT+TGG + chr4_4:9088761-9088780 Msa0668220:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr4_4:9088815-9088834 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr4_4:9088928-9088947 Msa0668220:CDS 45.0%
GGACTTAGCAGTCAAAATCC+AGG + chr4_4:9089028-9089047 Msa0668220:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr4_4:9089049-9089068 None:intergenic 45.0%
TTCCGACGAAGTTCTTACCA+AGG + chr4_4:9089096-9089115 Msa0668220:CDS 45.0%
AGCCTTGGTAAGAACTTCGT+CGG - chr4_4:9089101-9089120 None:intergenic 45.0%
!! ATTTATTAAAAAATTAATGA+CGG + chr4_4:9088165-9088184 Msa0668220:intron 5.0%
!! ATTTATTAAAAAATTAATGA+CGG + chr4_4:9088165-9088184 Msa0668220:intron 5.0%
GTCAGAAGCAAAGGCAAGAG+AGG - chr4_4:9088365-9088384 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG - chr4_4:9088387-9088406 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG - chr4_4:9088388-9088407 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG - chr4_4:9088389-9088408 None:intergenic 50.0%
! CTTCAGCTTTAACAAGCGCG+GGG - chr4_4:9088664-9088683 None:intergenic 50.0%
TGGGAATGCCTCAAATGCCT+TGG + chr4_4:9088706-9088725 Msa0668220:CDS 50.0%
GGGAATGCCTCAAATGCCTT+GGG + chr4_4:9088707-9088726 Msa0668220:CDS 50.0%
! TTGAGAGCCCAAGGCATTTG+AGG - chr4_4:9088717-9088736 None:intergenic 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr4_4:9088796-9088815 Msa0668220:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr4_4:9088797-9088816 Msa0668220:CDS 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr4_4:9088936-9088955 None:intergenic 50.0%
GTCAGAAGCAAAGGCAAGAG+AGG - chr4_4:9088365-9088384 None:intergenic 50.0%
AAAAGTCTTGGAGAGGGCTG+GGG - chr4_4:9088387-9088406 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG - chr4_4:9088388-9088407 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG - chr4_4:9088389-9088408 None:intergenic 50.0%
! CTTCAGCTTTAACAAGCGCG+GGG - chr4_4:9088664-9088683 None:intergenic 50.0%
TGGGAATGCCTCAAATGCCT+TGG + chr4_4:9088706-9088725 Msa0668220:CDS 50.0%
GGGAATGCCTCAAATGCCTT+GGG + chr4_4:9088707-9088726 Msa0668220:CDS 50.0%
! TTGAGAGCCCAAGGCATTTG+AGG - chr4_4:9088717-9088736 None:intergenic 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr4_4:9088796-9088815 Msa0668220:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr4_4:9088797-9088816 Msa0668220:CDS 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr4_4:9088936-9088955 None:intergenic 50.0%
TGGAGTCACTTGAGAGCCCA+AGG - chr4_4:9088726-9088745 None:intergenic 55.0%
! AGTAGTTGGTCTACGGCGAC+TGG - chr4_4:9088746-9088765 None:intergenic 55.0%
GTCGCCGTAGACCAACTACT+CGG + chr4_4:9088746-9088765 Msa0668220:CDS 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr4_4:9088829-9088848 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr4_4:9088833-9088852 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr4_4:9088841-9088860 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG + chr4_4:9089007-9089026 Msa0668220:CDS 55.0%
TGGAGTCACTTGAGAGCCCA+AGG - chr4_4:9088726-9088745 None:intergenic 55.0%
! AGTAGTTGGTCTACGGCGAC+TGG - chr4_4:9088746-9088765 None:intergenic 55.0%
GTCGCCGTAGACCAACTACT+CGG + chr4_4:9088746-9088765 Msa0668220:CDS 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr4_4:9088829-9088848 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr4_4:9088833-9088852 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr4_4:9088841-9088860 None:intergenic 55.0%
! GGCAACGCTGTTGCTATTGC+TGG + chr4_4:9089007-9089026 Msa0668220:CDS 55.0%
AGGGCTGGGGTCAGAAGCAA+AGG - chr4_4:9088374-9088393 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr4_4:9088830-9088849 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr4_4:9088827-9088846 Msa0668220:CDS 60.0%
AGGGCTGGGGTCAGAAGCAA+AGG - chr4_4:9088374-9088393 None:intergenic 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr4_4:9088830-9088849 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr4_4:9088827-9088846 Msa0668220:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 9087488 9089183 9087488 ID=Msa0668220;Name=Msa0668220
chr4_4 mRNA 9087488 9089183 9087488 ID=Msa0668220-mRNA-1;Parent=Msa0668220;Name=Msa0668220-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.5|1|1|2|0|188
chr4_4 exon 9087488 9087503 9087488 ID=Msa0668220-mRNA-1:exon:2896;Parent=Msa0668220-mRNA-1
chr4_4 exon 9088633 9089183 9088633 ID=Msa0668220-mRNA-1:exon:2897;Parent=Msa0668220-mRNA-1
chr4_4 CDS 9087488 9087503 9087488 ID=Msa0668220-mRNA-1:cds;Parent=Msa0668220-mRNA-1
chr4_4 CDS 9088633 9089183 9088633 ID=Msa0668220-mRNA-1:cds;Parent=Msa0668220-mRNA-1
Gene Sequence

>Msa0668220

ATGCAGTCATCAAAAGTATTCGTGAATGGGAAATTCTGTAAAGACCCCGCGCTTGTTAAAGCTGAAGATTTTTTCAAACACGTTGAAGCTGGGAATGCCTCAAATGCCTTGGGCTCTCAAGTGACTCCAGTCGCCGTAGACCAACTACTCGGACTTAACACACTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTTGAAGGCACTCTTTATGTTGGATTTGTCACGTCAAATCAAGACAACAATAATCGTCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAACTGAATGTTGGATATGGCAACGCTGTTGCTATTGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACCGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAGGCTTTTCAAGTGGATAAAAGCATAGTTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0668220

MQSSKVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVAVDQLLGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVTSNQDNNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIVDYLQKQSWYDNN*