Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380240 | XP_003604022.1 | 97.527 | 364 | 7 | 1 | 1 | 364 | 1 | 362 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380240 | G7J7U7 | 97.527 | 364 | 7 | 1 | 1 | 364 | 1 | 362 | 0.0 | 712 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0380240 | Msa0524160 | 0.857141 | 1.998133e-62 | -8.615850e-47 |
| Msa0380240 | Msa1365090 | 0.899675 | 1.566301e-77 | -8.615850e-47 |
| Msa0380240 | Msa1367340 | 0.895110 | 1.308327e-75 | -8.615850e-47 |
| Msa0380240 | Msa1443080 | 0.868807 | 4.961325e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380240 | MtrunA17_Chr3g0145431 | 97.527 | 364 | 7 | 1 | 1 | 364 | 1 | 362 | 0.0 | 712 |
| Msa0380240 | MtrunA17_Chr4g0038631 | 74.114 | 367 | 86 | 4 | 4 | 364 | 7 | 370 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380240 | AT4G38810.2 | 63.115 | 366 | 126 | 4 | 1 | 360 | 1 | 363 | 1.08e-162 | 460 |
| Msa0380240 | AT4G38810.1 | 59.375 | 256 | 95 | 4 | 111 | 360 | 1 | 253 | 1.04e-101 | 301 |
| Msa0380240 | AT5G28830.1 | 23.102 | 303 | 205 | 8 | 55 | 347 | 39 | 323 | 2.64e-11 | 64.3 |
Find 92 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACAGGCTTCTCTTTA+AGG | 0.119543 | 3_1:+81886377 | None:intergenic |
| TTCATTATTCACCGTCTTAA+AGG | 0.134887 | 3_1:+81885655 | None:intergenic |
| CTCCTCCTCCGTTCCTCTTC+TGG | 0.176059 | 3_1:+81889822 | None:intergenic |
| TGCTCTTGGTTTGCCTGCTC+AGG | 0.235368 | 3_1:-81889642 | Msa0380240:CDS |
| GATATAATTGACATTTAAAT+AGG | 0.241147 | 3_1:-81889968 | Msa0380240:five_prime_UTR |
| CAGACGTTGAACACGACTTT+AGG | 0.248256 | 3_1:-81886194 | Msa0380240:CDS |
| TCTTGATGGCTCCAACATTA+TGG | 0.250150 | 3_1:-81889789 | Msa0380240:CDS |
| ATAGGAGTATGACTTTCTTT+TGG | 0.264622 | 3_1:-81889950 | Msa0380240:five_prime_UTR |
| TTCCTCCTACATCAGATTCT+TGG | 0.291211 | 3_1:-81886716 | Msa0380240:CDS |
| TCAACTCAACAATATTATTA+TGG | 0.334349 | 3_1:+81889900 | None:intergenic |
| GGCACTGTTGTCTCAAGCTT+TGG | 0.358693 | 3_1:-81886470 | Msa0380240:CDS |
| GAACTTGTTATTGAAGCTTT+TGG | 0.363865 | 3_1:-81886762 | Msa0380240:CDS |
| TGACCAGCCATGTCGTTAAT+CGG | 0.385714 | 3_1:+81885432 | None:intergenic |
| ACCTCTTCAATTGCACCAAC+TGG | 0.390172 | 3_1:+81886083 | None:intergenic |
| GTTCTCTCAGACATTCTATT+AGG | 0.394979 | 3_1:-81886930 | Msa0380240:CDS |
| AATATCAAAGGATTACTTGC+AGG | 0.400730 | 3_1:-81886144 | Msa0380240:CDS |
| TCCTCCTACATCAGATTCTT+GGG | 0.401019 | 3_1:-81886715 | Msa0380240:intron |
| GAACAAGAATCAGTAGTAGA+TGG | 0.406004 | 3_1:-81889849 | Msa0380240:exon |
| AATGTCTCTTGATCTCTAAC+AGG | 0.406167 | 3_1:+81886442 | None:intergenic |
| CTCTGATCACATCTACTATC+AGG | 0.408189 | 3_1:-81889606 | Msa0380240:intron |
| AGACGTTGAACACGACTTTA+GGG | 0.414927 | 3_1:-81886193 | Msa0380240:CDS |
| GCTCTTGGTTTGCCTGCTCA+GGG | 0.416449 | 3_1:-81889641 | Msa0380240:CDS |
| AGTGTAGAAGATGAGCTTAA+AGG | 0.417154 | 3_1:+81885506 | None:intergenic |
| TGGCTCCAACATTATGGAAT+TGG | 0.417894 | 3_1:-81889783 | Msa0380240:CDS |
| GATCTTCTTGAGTTTGTTAA+CGG | 0.419045 | 3_1:-81886852 | Msa0380240:CDS |
| GCTGACATCGGTGCTGCTCT+TGG | 0.421869 | 3_1:-81889656 | Msa0380240:CDS |
| AGTATCATGTTGCAGTTAGA+AGG | 0.429901 | 3_1:-81885569 | Msa0380240:CDS |
| AAGAGGAACGGAGGAGGAGG+AGG | 0.433767 | 3_1:-81889818 | Msa0380240:CDS |
| CAACAAGTTTGAATTAGAAA+AGG | 0.439922 | 3_1:-81886302 | Msa0380240:intron |
| CTGATTCTTGTTCTTTCTTG+TGG | 0.440544 | 3_1:+81889859 | None:intergenic |
| TATCCAGCTCATGAAATTTG+TGG | 0.442680 | 3_1:+81889726 | None:intergenic |
| GAACAAGAATAATATTAAGA+TGG | 0.443655 | 3_1:+81885476 | None:intergenic |
| TCCAACCAATTCCATAATGT+TGG | 0.447482 | 3_1:+81889778 | None:intergenic |
| TCCATGCGGAGTATAACAAT+TGG | 0.449386 | 3_1:+81886882 | None:intergenic |
| CTTGTGGTTTATTTGACTGA+GGG | 0.459556 | 3_1:+81889875 | None:intergenic |
| TTTGGAAGAATTCAAGAAAG+TGG | 0.460032 | 3_1:-81886419 | Msa0380240:CDS |
| CAGAAGAGGAACGGAGGAGG+AGG | 0.464641 | 3_1:-81889821 | Msa0380240:CDS |
| GGAGGAGGAGAGGTTCTTGA+TGG | 0.474743 | 3_1:-81889803 | Msa0380240:CDS |
| GTCATTTCTGTATAATAACT+TGG | 0.474803 | 3_1:+81886828 | None:intergenic |
| CAAATTTCATGAGCTGGATA+AGG | 0.483471 | 3_1:-81889723 | Msa0380240:CDS |
| AGCGGGCTCAAGCTCCTTCA+AGG | 0.483560 | 3_1:+81889682 | None:intergenic |
| TTGTTATACTCCGCATGGAT+GGG | 0.487450 | 3_1:-81886878 | Msa0380240:CDS |
| TAGTAGATGTGATCAGAGTC+AGG | 0.489937 | 3_1:+81889611 | None:intergenic |
| GCAAGGATTCAACAAGTTTG+TGG | 0.490981 | 3_1:-81889750 | Msa0380240:CDS |
| GGACCACAAATTTCATGAGC+TGG | 0.499403 | 3_1:-81889729 | Msa0380240:CDS |
| TGTTGTCTCAAGCTTTGGAT+AGG | 0.500092 | 3_1:-81886465 | Msa0380240:CDS |
| CGAGAAATTAAATATGATCC+AGG | 0.503924 | 3_1:+81885367 | None:intergenic |
| TCAGGAGTAGTGCCCTGAGC+AGG | 0.508149 | 3_1:+81889629 | None:intergenic |
| ATTCTATTAGGCATGGCTGC+TGG | 0.509238 | 3_1:-81886918 | Msa0380240:CDS |
| GCACCGATGTCAGCAACAGC+GGG | 0.511448 | 3_1:+81889665 | None:intergenic |
| TACCTATGCAAATTGTTACC+TGG | 0.513205 | 3_1:-81885385 | Msa0380240:three_prime_UTR |
| AACCAGAAGAGGAACGGAGG+AGG | 0.517853 | 3_1:-81889824 | Msa0380240:CDS |
| TCACTGTGAGCTACAATGAC+AGG | 0.521245 | 3_1:+81886364 | None:intergenic |
| ATTGTTATACTCCGCATGGA+TGG | 0.523821 | 3_1:-81886879 | Msa0380240:CDS |
| AACAAGAATAATATTAAGAT+GGG | 0.524551 | 3_1:+81885477 | None:intergenic |
| TCTTGTGGTTTATTTGACTG+AGG | 0.524629 | 3_1:+81889874 | None:intergenic |
| TCTGCTGGTTTACCTCCAGT+TGG | 0.524964 | 3_1:-81886098 | Msa0380240:CDS |
| CTCAGACATTCTATTAGGCA+TGG | 0.528189 | 3_1:-81886925 | Msa0380240:CDS |
| GATGTGGTGTCTCCATCTGC+TGG | 0.529207 | 3_1:-81886113 | Msa0380240:CDS |
| GAGCCCGCTGTTGCTGACAT+CGG | 0.531602 | 3_1:-81889668 | Msa0380240:CDS |
| CCATGCGGAGTATAACAATT+GGG | 0.533794 | 3_1:+81886883 | None:intergenic |
| AGATGGTAAACTCTCCTTGA+AGG | 0.538224 | 3_1:-81889696 | Msa0380240:CDS |
| TGTTATACTCCGCATGGATG+GGG | 0.540149 | 3_1:-81886877 | Msa0380240:CDS |
| AAGCTTCAATAACAAGTTCG+CGG | 0.551585 | 3_1:+81886766 | None:intergenic |
| GAATTTGAAGAAACAGCAAT+GGG | 0.554960 | 3_1:+81885542 | None:intergenic |
| CCCAATTGTTATACTCCGCA+TGG | 0.557293 | 3_1:-81886883 | Msa0380240:CDS |
| GTGTTGAATGAATTCACTCA+TGG | 0.557877 | 3_1:-81886990 | Msa0380240:CDS |
| TCCAACATTATGGAATTGGT+TGG | 0.565142 | 3_1:-81889779 | Msa0380240:CDS |
| TAACCGATTAACGACATGGC+TGG | 0.572052 | 3_1:-81885435 | Msa0380240:three_prime_UTR |
| TGAATTTGAAGAAACAGCAA+TGG | 0.575925 | 3_1:+81885541 | None:intergenic |
| AGCACCGATGTCAGCAACAG+CGG | 0.580542 | 3_1:+81889664 | None:intergenic |
| ATTACCCAAGAATCTGATGT+AGG | 0.586136 | 3_1:+81886711 | None:intergenic |
| GAATTGGTTGGAAACGAGCA+AGG | 0.589020 | 3_1:-81889767 | Msa0380240:CDS |
| TATTAGTGAAGCCTTTAAGA+CGG | 0.589119 | 3_1:-81885666 | Msa0380240:CDS |
| AGTAGATGGAAAACCAGAAG+AGG | 0.593555 | 3_1:-81889835 | Msa0380240:exon |
| AAAGCTTGAGACAACAGTGC+CGG | 0.602253 | 3_1:+81886472 | None:intergenic |
| GGAAGACTCGATGTTGATCG+AGG | 0.609171 | 3_1:-81886741 | Msa0380240:CDS |
| TCCAGTTGGTGCAATTGAAG+AGG | 0.610698 | 3_1:-81886084 | Msa0380240:intron |
| ACTGGAGGTAAACCAGCAGA+TGG | 0.614242 | 3_1:+81886101 | None:intergenic |
| ACCCAAGAATCTGATGTAGG+AGG | 0.614585 | 3_1:+81886714 | None:intergenic |
| GTTAAGTGTGTCCCCACATG+TGG | 0.623821 | 3_1:+81889924 | None:intergenic |
| TGCATAACCGATTAACGACA+TGG | 0.635170 | 3_1:-81885439 | Msa0380240:three_prime_UTR |
| CAAGAAAGTGGCATTGAGTG+TGG | 0.640256 | 3_1:-81886407 | Msa0380240:CDS |
| ATGGAAAACCAGAAGAGGAA+CGG | 0.642985 | 3_1:-81889830 | Msa0380240:CDS |
| TCTTCAATTGCACCAACTGG+AGG | 0.650559 | 3_1:+81886086 | None:intergenic |
| GAGCAAGAGTGAGTTCAAAG+AGG | 0.651775 | 3_1:-81886952 | Msa0380240:CDS |
| ATCCAGGTAACAATTTGCAT+AGG | 0.662558 | 3_1:+81885383 | None:intergenic |
| AATCTGCCAAAAGATCGAAA+CGG | 0.663483 | 3_1:-81886170 | Msa0380240:CDS |
| GAAAACCAGAAGAGGAACGG+AGG | 0.663724 | 3_1:-81889827 | Msa0380240:CDS |
| GAGCTGGATAAGGACAGAGA+TGG | 0.674340 | 3_1:-81889713 | Msa0380240:CDS |
| GAAGATCTTCCCCATCCATG+CGG | 0.725608 | 3_1:+81886868 | None:intergenic |
| CTTGCAGGTGACACTAGATG+TGG | 0.729256 | 3_1:-81886129 | Msa0380240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTATCAATGTAT+TGG | - | chr3_1:81885873-81885892 | Msa0380240:intron | 10.0% |
| !! | CAAAAATATAAATAATCTTA+AGG | + | chr3_1:81888102-81888121 | None:intergenic | 10.0% |
| !!! | AAAATTTTAATTGAAATACT+GGG | - | chr3_1:81889687-81889706 | Msa0380240:CDS | 10.0% |
| !! | GATATAATTGACATTTAAAT+AGG | - | chr3_1:81885312-81885331 | Msa0380240:three_prime_UTR | 15.0% |
| !! | ATTACATAATAAAAAGAGAA+AGG | + | chr3_1:81885707-81885726 | None:intergenic | 15.0% |
| !! | AACATATATATTACCAATAT+GGG | + | chr3_1:81886424-81886443 | None:intergenic | 15.0% |
| !! | AAACATATATATTACCAATA+TGG | + | chr3_1:81886425-81886444 | None:intergenic | 15.0% |
| !! | ATAGATAGATAATTGATAAA+TGG | - | chr3_1:81886815-81886834 | Msa0380240:CDS | 15.0% |
| !! | AAAACCTATACTTATTTATA+CGG | + | chr3_1:81886888-81886907 | None:intergenic | 15.0% |
| !!! | AATTTCTAAAAATTAAGACT+GGG | - | chr3_1:81887002-81887021 | Msa0380240:intron | 15.0% |
| !! | TTTATTATTCAACTCAAAAT+GGG | + | chr3_1:81887399-81887418 | None:intergenic | 15.0% |
| !! | ATTTATTATTCAACTCAAAA+TGG | + | chr3_1:81887400-81887419 | None:intergenic | 15.0% |
| !!! | ACTTTGATATATTTTATTTG+TGG | - | chr3_1:81889042-81889061 | Msa0380240:intron | 15.0% |
| !!! | GAAAATTTTAATTGAAATAC+TGG | - | chr3_1:81889686-81889705 | Msa0380240:CDS | 15.0% |
| !!! | AAATTTTAATTGAAATACTG+GGG | - | chr3_1:81889688-81889707 | Msa0380240:CDS | 15.0% |
| !! | AACAAGAATAATATTAAGAT+GGG | + | chr3_1:81889806-81889825 | None:intergenic | 15.0% |
| !! | GTAAATAAAAATATTGTACT+TGG | + | chr3_1:81889878-81889897 | None:intergenic | 15.0% |
| !! | TCAACTCAACAATATTATTA+TGG | + | chr3_1:81885383-81885402 | None:intergenic | 20.0% |
| !! | GTTATCATGGATAATTAATT+AGG | + | chr3_1:81886123-81886142 | None:intergenic | 20.0% |
| !! | ATTAATTATCCATGATAACA+TGG | - | chr3_1:81886124-81886143 | Msa0380240:CDS | 20.0% |
| !! | GTCAAAAATCATAATTACAA+TGG | + | chr3_1:81886288-81886307 | None:intergenic | 20.0% |
| !! | GTGATATAAACTTATAAAGT+TGG | - | chr3_1:81886565-81886584 | Msa0380240:intron | 20.0% |
| !!! | AAAATCTGATTTGATCAAAT+AGG | + | chr3_1:81886865-81886884 | None:intergenic | 20.0% |
| !!! | TTTTCCGTATAAATAAGTAT+AGG | - | chr3_1:81886881-81886900 | Msa0380240:CDS | 20.0% |
| !!! | CAATTTCTAAAAATTAAGAC+TGG | - | chr3_1:81887001-81887020 | Msa0380240:intron | 20.0% |
| !! | TCTGAATATGTATGTTAAAA+TGG | - | chr3_1:81887124-81887143 | Msa0380240:intron | 20.0% |
| !! | TTATTATTCAACTCAAAATG+GGG | + | chr3_1:81887398-81887417 | None:intergenic | 20.0% |
| !! | TTATTAGAGTGATAAAAAGT+TGG | - | chr3_1:81887673-81887692 | Msa0380240:intron | 20.0% |
| !! | TAACCAAATATGGTAAATAT+GGG | - | chr3_1:81887833-81887852 | Msa0380240:intron | 20.0% |
| !! | ATGATTATATATCAATGATG+TGG | - | chr3_1:81886788-81886807 | Msa0380240:CDS | 20.0% |
| !! | ATCTTAAGGAAAACAATATA+CGG | + | chr3_1:81888088-81888107 | None:intergenic | 20.0% |
| !! | TATTGATCTTGAAAATACAA+TGG | + | chr3_1:81888146-81888165 | None:intergenic | 20.0% |
| !! | GAACAAGAATAAAAATTTGA+TGG | - | chr3_1:81888254-81888273 | Msa0380240:intron | 20.0% |
| !! | GAACAAGAATAATATTAAGA+TGG | + | chr3_1:81889807-81889826 | None:intergenic | 20.0% |
| ! | CATGGATAATTAATTAGGAT+AGG | + | chr3_1:81886118-81886137 | None:intergenic | 25.0% |
| ! | ATAAAAAGCAAAATTGAGCA+GGG | + | chr3_1:81886190-81886209 | None:intergenic | 25.0% |
| ! | AATAAAAAGCAAAATTGAGC+AGG | + | chr3_1:81886191-81886210 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTTCTTCTTCT+AGG | - | chr3_1:81886262-81886281 | Msa0380240:intron | 25.0% |
| ! | AGTATATGCTAAAACATTGA+CGG | - | chr3_1:81886458-81886477 | Msa0380240:CDS | 25.0% |
| !! | CTTCAAGTTCAAAGATTAAA+CGG | + | chr3_1:81886490-81886509 | None:intergenic | 25.0% |
| ! | TTAATGTAATGATGAACTCA+AGG | - | chr3_1:81886601-81886620 | Msa0380240:intron | 25.0% |
| ! | TAATGTAATGATGAACTCAA+GGG | - | chr3_1:81886602-81886621 | Msa0380240:intron | 25.0% |
| ! | ATCTTAGGGAAAACAATATA+GGG | + | chr3_1:81886911-81886930 | None:intergenic | 25.0% |
| ! | AATCTTAGGGAAAACAATAT+AGG | + | chr3_1:81886912-81886931 | None:intergenic | 25.0% |
| ! | TACTGAATTTGAAAATGCAA+TGG | + | chr3_1:81886973-81886992 | None:intergenic | 25.0% |
| ! | TATGTATGTTAAAATGGATG+TGG | - | chr3_1:81887130-81887149 | Msa0380240:intron | 25.0% |
| ! | TATCTAGGCAAAACATTATA+GGG | + | chr3_1:81887318-81887337 | None:intergenic | 25.0% |
| ! | ATATCTAGGCAAAACATTAT+AGG | + | chr3_1:81887319-81887338 | None:intergenic | 25.0% |
| ! | TACTTTATGCTACAATATCT+AGG | + | chr3_1:81887333-81887352 | None:intergenic | 25.0% |
| ! | AGGCAAAATTGATCTTTAAA+TGG | - | chr3_1:81887778-81887797 | Msa0380240:intron | 25.0% |
| ! | ATCTTTAAATGGAATCCTTT+GGG | - | chr3_1:81887789-81887808 | Msa0380240:intron | 25.0% |
| ! | CATATTTACCATATTTGGTT+AGG | + | chr3_1:81887834-81887853 | None:intergenic | 25.0% |
| ! | CTAACCAAATATGGTAAATA+TGG | - | chr3_1:81887832-81887851 | Msa0380240:intron | 25.0% |
| ! | ATAAAAGATACCTTAGAAAC+AGG | - | chr3_1:81887865-81887884 | Msa0380240:intron | 25.0% |
| ! | TAAAAGATACCTTAGAAACA+GGG | - | chr3_1:81887866-81887885 | Msa0380240:intron | 25.0% |
| !!! | TCATGTGCAGAAATTTTAAT+AGG | + | chr3_1:81888204-81888223 | None:intergenic | 25.0% |
| ! | GTCATTTCTGTATAATAACT+TGG | + | chr3_1:81888455-81888474 | None:intergenic | 25.0% |
| !! | TTAGGTTTTTAACAACATTG+TGG | - | chr3_1:81888783-81888802 | Msa0380240:intron | 25.0% |
| !! | CTTTTCTAATTCAAACTTGT+TGG | + | chr3_1:81888980-81888999 | None:intergenic | 25.0% |
| ! | CAACAAGTTTGAATTAGAAA+AGG | - | chr3_1:81888978-81888997 | Msa0380240:intron | 25.0% |
| !! | ATATACTGACTAATATGCAT+TGG | + | chr3_1:81889235-81889254 | None:intergenic | 25.0% |
| ! | AATTTAATCAGACATTGTGA+TGG | + | chr3_1:81889330-81889349 | None:intergenic | 25.0% |
| !!! | TTTGATTTTACAGATGGATA+AGG | - | chr3_1:81889590-81889609 | Msa0380240:intron | 25.0% |
| !! | ATAGGAGTATGACTTTCTTT+TGG | - | chr3_1:81885330-81885349 | Msa0380240:three_prime_UTR | 30.0% |
| !! | TAGGAGTATGACTTTCTTTT+GGG | - | chr3_1:81885331-81885350 | Msa0380240:three_prime_UTR | 30.0% |
| GAAAGAAATTCCTTTGTGTT+TGG | - | chr3_1:81885914-81885933 | Msa0380240:intron | 30.0% | |
| ACCACATACACAAAAAGAAA+GGG | + | chr3_1:81885955-81885974 | None:intergenic | 30.0% | |
| AACCACATACACAAAAAGAA+AGG | + | chr3_1:81885956-81885975 | None:intergenic | 30.0% | |
| ATGTGATACTTTATAGAAGC+TGG | - | chr3_1:81886080-81886099 | Msa0380240:intron | 30.0% | |
| ATTATCCATGATAACATGGT+CGG | - | chr3_1:81886128-81886147 | Msa0380240:CDS | 30.0% | |
| AGACAGACTAATGAAAAAAC+CGG | + | chr3_1:81886401-81886420 | None:intergenic | 30.0% | |
| TCAGTTAGCACTAGTAATTT+GGG | + | chr3_1:81886634-81886653 | None:intergenic | 30.0% | |
| ATCAGTTAGCACTAGTAATT+TGG | + | chr3_1:81886635-81886654 | None:intergenic | 30.0% | |
| TTATGCGTCTTTACCATATT+TGG | + | chr3_1:81886729-81886748 | None:intergenic | 30.0% | |
| ATATGGTAAAGACGCATAAA+AGG | - | chr3_1:81886730-81886749 | Msa0380240:CDS | 30.0% | |
| TTTCCATGAGATATCTATCT+AGG | - | chr3_1:81887166-81887185 | Msa0380240:intron | 30.0% | |
| TTCCATGAGATATCTATCTA+GGG | - | chr3_1:81887167-81887186 | Msa0380240:intron | 30.0% | |
| ATCTAGGCAAAACATTATAG+GGG | + | chr3_1:81887317-81887336 | None:intergenic | 30.0% | |
| TTTAAGCCGTAATTATACCT+TGG | + | chr3_1:81887499-81887518 | None:intergenic | 30.0% | |
| TGTCACTCATGTGAAAAAAT+CGG | + | chr3_1:81887570-81887589 | None:intergenic | 30.0% | |
| GATCTTTAAATGGAATCCTT+TGG | - | chr3_1:81887788-81887807 | Msa0380240:intron | 30.0% | |
| GTTCCCATATTTACCATATT+TGG | + | chr3_1:81887839-81887858 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTCCCTGTTTCTA+AGG | + | chr3_1:81887878-81887897 | None:intergenic | 30.0% |
| AACAGGGAGAAAAAAAATAG+AGG | - | chr3_1:81887882-81887901 | Msa0380240:intron | 30.0% | |
| TTCATGATGACAGTAAACTT+AGG | + | chr3_1:81887955-81887974 | None:intergenic | 30.0% | |
| TACAGATTGTATGATTGCAT+AGG | + | chr3_1:81887978-81887997 | None:intergenic | 30.0% | |
| !! | GGAGAGCTCATATTTTTATT+CGG | + | chr3_1:81888067-81888086 | None:intergenic | 30.0% |
| !! | ATTTGATGGACTTGTTGTAT+AGG | - | chr3_1:81888268-81888287 | Msa0380240:intron | 30.0% |
| !! | GATCTTCTTGAGTTTGTTAA+CGG | - | chr3_1:81888428-81888447 | Msa0380240:intron | 30.0% |
| !! | GTTTTGAATCTGAGAGAATA+TGG | + | chr3_1:81888480-81888499 | None:intergenic | 30.0% |
| !!! | GAACTTGTTATTGAAGCTTT+TGG | - | chr3_1:81888518-81888537 | Msa0380240:intron | 30.0% |
| ! | TTTTAACAACATTGTGGATC+CGG | - | chr3_1:81888789-81888808 | Msa0380240:intron | 30.0% |
| ! | TAGAGATCAAGAGACATTTT+TGG | - | chr3_1:81888843-81888862 | Msa0380240:intron | 30.0% |
| TTTGGAAGAATTCAAGAAAG+TGG | - | chr3_1:81888861-81888880 | Msa0380240:intron | 30.0% | |
| ! | ATTTTTCCGTTTCGATCTTT+TGG | + | chr3_1:81889119-81889138 | None:intergenic | 30.0% |
| TCGAAACGGAAAAATATCAA+AGG | - | chr3_1:81889124-81889143 | Msa0380240:intron | 30.0% | |
| AATATCAAAGGATTACTTGC+AGG | - | chr3_1:81889136-81889155 | Msa0380240:intron | 30.0% | |
| ! | ATATCAATCTGTCTCCATTT+TGG | - | chr3_1:81889287-81889306 | Msa0380240:intron | 30.0% |
| TTTCAGTCGCAATATTTGTT+GGG | + | chr3_1:81889399-81889418 | None:intergenic | 30.0% | |
| ATTTCAGTCGCAATATTTGT+TGG | + | chr3_1:81889400-81889419 | None:intergenic | 30.0% | |
| !! | GATGTGTTTGATTTTACAGA+TGG | - | chr3_1:81889584-81889603 | Msa0380240:intron | 30.0% |
| ! | TATTAGTGAAGCCTTTAAGA+CGG | - | chr3_1:81889614-81889633 | Msa0380240:CDS | 30.0% |
| TTCATTATTCACCGTCTTAA+AGG | + | chr3_1:81889628-81889647 | None:intergenic | 30.0% | |
| GAATTTGAAGAAACAGCAAT+GGG | + | chr3_1:81889741-81889760 | None:intergenic | 30.0% | |
| TGAATTTGAAGAAACAGCAA+TGG | + | chr3_1:81889742-81889761 | None:intergenic | 30.0% | |
| CGAGAAATTAAATATGATCC+AGG | + | chr3_1:81889916-81889935 | None:intergenic | 30.0% | |
| CTTGTGGTTTATTTGACTGA+GGG | + | chr3_1:81885408-81885427 | None:intergenic | 35.0% | |
| TCTTGTGGTTTATTTGACTG+AGG | + | chr3_1:81885409-81885428 | None:intergenic | 35.0% | |
| CTGATTCTTGTTCTTTCTTG+TGG | + | chr3_1:81885424-81885443 | None:intergenic | 35.0% | |
| GAACAAGAATCAGTAGTAGA+TGG | - | chr3_1:81885431-81885450 | Msa0380240:three_prime_UTR | 35.0% | |
| TCCAACATTATGGAATTGGT+TGG | - | chr3_1:81885501-81885520 | Msa0380240:CDS | 35.0% | |
| TCCAACCAATTCCATAATGT+TGG | + | chr3_1:81885505-81885524 | None:intergenic | 35.0% | |
| TATCCAGCTCATGAAATTTG+TGG | + | chr3_1:81885557-81885576 | None:intergenic | 35.0% | |
| CAAATTTCATGAGCTGGATA+AGG | - | chr3_1:81885557-81885576 | Msa0380240:CDS | 35.0% | |
| !! | GTTGCTCTTCACTTTTGTTT+TGG | - | chr3_1:81885775-81885794 | Msa0380240:intron | 35.0% |
| CCACATACACAAAAAGAAAG+GGG | + | chr3_1:81885954-81885973 | None:intergenic | 35.0% | |
| TTGAAGACGAATTCTGAACT+TGG | - | chr3_1:81886013-81886032 | Msa0380240:intron | 35.0% | |
| AATTAGGATAGGACACTTCT+GGG | + | chr3_1:81886107-81886126 | None:intergenic | 35.0% | |
| TAATTAGGATAGGACACTTC+TGG | + | chr3_1:81886108-81886127 | None:intergenic | 35.0% | |
| AAAGGAGATTGGCAGAAAAA+TGG | + | chr3_1:81886215-81886234 | None:intergenic | 35.0% | |
| TAATGATGAACTCAAGGGAA+GGG | - | chr3_1:81886607-81886626 | Msa0380240:intron | 35.0% | |
| ! | ATATCTGAAGTTAGTGCTTG+TGG | - | chr3_1:81886653-81886672 | Msa0380240:intron | 35.0% |
| ! | TATCTGAAGTTAGTGCTTGT+GGG | - | chr3_1:81886654-81886673 | Msa0380240:intron | 35.0% |
| TTACCATATTTGGTAAGGCA+AGG | + | chr3_1:81886719-81886738 | None:intergenic | 35.0% | |
| CGTCTTTACCATATTTGGTA+AGG | + | chr3_1:81886724-81886743 | None:intergenic | 35.0% | |
| ! | TTTTTGTCTTTCTGTGGCTA+AGG | + | chr3_1:81886758-81886777 | None:intergenic | 35.0% |
| !!! | CCTCTATTTTTGTCTTTCTG+TGG | + | chr3_1:81886764-81886783 | None:intergenic | 35.0% |
| CCACAGAAAGACAAAAATAG+AGG | - | chr3_1:81886761-81886780 | Msa0380240:CDS | 35.0% | |
| TCAAATAGGTTCATGATGAC+AGG | + | chr3_1:81886851-81886870 | None:intergenic | 35.0% | |
| TCCATGAGATATCTATCTAG+GGG | - | chr3_1:81887168-81887187 | Msa0380240:intron | 35.0% | |
| TAGACAAGTGTCTGTTATGA+AGG | - | chr3_1:81887262-81887281 | Msa0380240:intron | 35.0% | |
| AGTCTCATAGAGGATTCAAA+TGG | + | chr3_1:81887522-81887541 | None:intergenic | 35.0% | |
| TATGAGACTAATCCTCAAGT+CGG | - | chr3_1:81887533-81887552 | Msa0380240:intron | 35.0% | |
| TAAGTGGTATGAGTCATCAA+TGG | + | chr3_1:81887628-81887647 | None:intergenic | 35.0% | |
| ! | TACCACTTAGTCTTTGAACT+TGG | - | chr3_1:81887639-81887658 | Msa0380240:intron | 35.0% |
| ACACATTTGCTTTATCCCAA+AGG | + | chr3_1:81887807-81887826 | None:intergenic | 35.0% | |
| GTGTCTTACCTAACCAAATA+TGG | - | chr3_1:81887823-81887842 | Msa0380240:intron | 35.0% | |
| GTGGTCAGATATTTGATGAA+TGG | - | chr3_1:81887928-81887947 | Msa0380240:intron | 35.0% | |
| !!! | GTTGTCTAGTTTTGATCGAA+TGG | + | chr3_1:81888009-81888028 | None:intergenic | 35.0% |
| GGACACGCATAAATTATTGA+AGG | + | chr3_1:81888183-81888202 | None:intergenic | 35.0% | |
| TTCCAGTTCCATCAATTATC+AGG | + | chr3_1:81888237-81888256 | None:intergenic | 35.0% | |
| GTGTTGAATGAATTCACTCA+TGG | - | chr3_1:81888290-81888309 | Msa0380240:intron | 35.0% | |
| GTTCTCTCAGACATTCTATT+AGG | - | chr3_1:81888350-81888369 | Msa0380240:intron | 35.0% | |
| AAGCTTCAATAACAAGTTCG+CGG | + | chr3_1:81888517-81888536 | None:intergenic | 35.0% | |
| ATTACCCAAGAATCTGATGT+AGG | + | chr3_1:81888572-81888591 | None:intergenic | 35.0% | |
| ACACAACATGTTTCAATGCA+AGG | + | chr3_1:81888623-81888642 | None:intergenic | 35.0% | |
| AATGTCTCTTGATCTCTAAC+AGG | + | chr3_1:81888841-81888860 | None:intergenic | 35.0% | |
| ! | CACAGTGAAAACACTTTTGA+TGG | - | chr3_1:81888931-81888950 | Msa0380240:intron | 35.0% |
| ! | GAAAACACTTTTGATGGAAG+TGG | - | chr3_1:81888937-81888956 | Msa0380240:intron | 35.0% |
| AAAGTGAATTAACAGCTCAG+TGG | + | chr3_1:81889027-81889046 | None:intergenic | 35.0% | |
| AATCTGCCAAAAGATCGAAA+CGG | - | chr3_1:81889110-81889129 | Msa0380240:intron | 35.0% | |
| TCCATATATGATGTTTGCGA+CGG | - | chr3_1:81889258-81889277 | Msa0380240:intron | 35.0% | |
| CCTTTGAATCTGTTCCAAAA+TGG | + | chr3_1:81889304-81889323 | None:intergenic | 35.0% | |
| !!! | CCATTTTGGAACAGATTCAA+AGG | - | chr3_1:81889301-81889320 | Msa0380240:intron | 35.0% |
| !! | TCTCGTCACAACTCATTTTT+GGG | + | chr3_1:81889442-81889461 | None:intergenic | 35.0% |
| ! | ATCTCGTCACAACTCATTTT+TGG | + | chr3_1:81889443-81889462 | None:intergenic | 35.0% |
| TACAAGACAAAAGGGACTTT+GGG | + | chr3_1:81889496-81889515 | None:intergenic | 35.0% | |
| AGTATCATGTTGCAGTTAGA+AGG | - | chr3_1:81889711-81889730 | Msa0380240:CDS | 35.0% | |
| AGTGTAGAAGATGAGCTTAA+AGG | + | chr3_1:81889777-81889796 | None:intergenic | 35.0% | |
| TACCTATGCAAATTGTTACC+TGG | - | chr3_1:81889895-81889914 | Msa0380240:five_prime_UTR | 35.0% | |
| ATCCAGGTAACAATTTGCAT+AGG | + | chr3_1:81889900-81889919 | None:intergenic | 35.0% | |
| !! | TTTCTTTTGGGAACCACATG+TGG | - | chr3_1:81885343-81885362 | Msa0380240:three_prime_UTR | 40.0% |
| !! | TTCTTTTGGGAACCACATGT+GGG | - | chr3_1:81885344-81885363 | Msa0380240:three_prime_UTR | 40.0% |
| AGTAGATGGAAAACCAGAAG+AGG | - | chr3_1:81885445-81885464 | Msa0380240:three_prime_UTR | 40.0% | |
| ATGGAAAACCAGAAGAGGAA+CGG | - | chr3_1:81885450-81885469 | Msa0380240:three_prime_UTR | 40.0% | |
| ! | TCTTGATGGCTCCAACATTA+TGG | - | chr3_1:81885491-81885510 | Msa0380240:CDS | 40.0% |
| TGGCTCCAACATTATGGAAT+TGG | - | chr3_1:81885497-81885516 | Msa0380240:CDS | 40.0% | |
| GCAAGGATTCAACAAGTTTG+TGG | - | chr3_1:81885530-81885549 | Msa0380240:CDS | 40.0% | |
| AGATGGTAAACTCTCCTTGA+AGG | - | chr3_1:81885584-81885603 | Msa0380240:CDS | 40.0% | |
| TAGTAGATGTGATCAGAGTC+AGG | + | chr3_1:81885672-81885691 | None:intergenic | 40.0% | |
| CTCTGATCACATCTACTATC+AGG | - | chr3_1:81885674-81885693 | Msa0380240:CDS | 40.0% | |
| CAAAAAGAAAGGGGCTAACT+TGG | + | chr3_1:81885945-81885964 | None:intergenic | 40.0% | |
| ! | CCCCTTTCTTTTTGTGTATG+TGG | - | chr3_1:81885951-81885970 | Msa0380240:intron | 40.0% |
| ATTAGGATAGGACACTTCTG+GGG | + | chr3_1:81886106-81886125 | None:intergenic | 40.0% | |
| ! | ACCAAAAAGCATATTCCCAC+CGG | + | chr3_1:81886155-81886174 | None:intergenic | 40.0% |
| ! | TTTTCTGCCAATCTCCTTTC+AGG | - | chr3_1:81886216-81886235 | Msa0380240:intron | 40.0% |
| TACCTTGGAGTCTTTAGTTG+AGG | + | chr3_1:81886310-81886329 | None:intergenic | 40.0% | |
| !! | CTCAAGGATTAGTCTCATAG+CGG | + | chr3_1:81886357-81886376 | None:intergenic | 40.0% |
| ! | CATTAGTCTGTCTCCCATAT+TGG | - | chr3_1:81886408-81886427 | Msa0380240:CDS | 40.0% |
| GTAATGATGAACTCAAGGGA+AGG | - | chr3_1:81886606-81886625 | Msa0380240:intron | 40.0% | |
| TATTTGGTAAGGCAAGGCAA+AGG | + | chr3_1:81886713-81886732 | None:intergenic | 40.0% | |
| TTGCCTTGCCTTACCAAATA+TGG | - | chr3_1:81886713-81886732 | Msa0380240:intron | 40.0% | |
| TTCATGATGACAGGAAACTG+GGG | + | chr3_1:81886842-81886861 | None:intergenic | 40.0% | |
| GTTCATGATGACAGGAAACT+GGG | + | chr3_1:81886843-81886862 | None:intergenic | 40.0% | |
| ATTAAGACTGGGAAGACGTT+TGG | - | chr3_1:81887013-81887032 | Msa0380240:intron | 40.0% | |
| TCCCCTAGATAGATATCTCA+TGG | + | chr3_1:81887172-81887191 | None:intergenic | 40.0% | |
| ! | GGGCATTTGAATGAGCTTTT+TGG | + | chr3_1:81887297-81887316 | None:intergenic | 40.0% |
| !!! | ATGGGGAAACTTATTTTGCC+TGG | + | chr3_1:81887381-81887400 | None:intergenic | 40.0% |
| TTATACCTTGGAGTGCGTAA+TGG | + | chr3_1:81887487-81887506 | None:intergenic | 40.0% | |
| CGCACTCCAAGGTATAATTA+CGG | - | chr3_1:81887490-81887509 | Msa0380240:intron | 40.0% | |
| !! | CTTGAGGATTAGTCTCATAG+AGG | + | chr3_1:81887532-81887551 | None:intergenic | 40.0% |
| CTCCAAGTTCAAAGACTAAG+TGG | + | chr3_1:81887644-81887663 | None:intergenic | 40.0% | |
| GCAGTTAGCACTAGCAATTA+GGG | + | chr3_1:81887732-81887751 | None:intergenic | 40.0% | |
| AGCAGTTAGCACTAGCAATT+AGG | + | chr3_1:81887733-81887752 | None:intergenic | 40.0% | |
| ! | ATCTGAAGTTAGTGCTTGTG+TGG | - | chr3_1:81886655-81886674 | Msa0380240:intron | 40.0% |
| AAGTTAGTGCTTGTGTGGAA+AGG | - | chr3_1:81887758-81887777 | Msa0380240:intron | 40.0% | |
| TTTCTGCACATGAATATGCC+CGG | - | chr3_1:81888211-81888230 | Msa0380240:intron | 40.0% | |
| AGTTCCATCAATTATCAGGC+CGG | + | chr3_1:81888233-81888252 | None:intergenic | 40.0% | |
| CTCAGACATTCTATTAGGCA+TGG | - | chr3_1:81888355-81888374 | Msa0380240:intron | 40.0% | |
| CCATGCGGAGTATAACAATT+GGG | + | chr3_1:81888400-81888419 | None:intergenic | 40.0% | |
| TCCATGCGGAGTATAACAAT+TGG | + | chr3_1:81888401-81888420 | None:intergenic | 40.0% | |
| ATTGTTATACTCCGCATGGA+TGG | - | chr3_1:81888401-81888420 | Msa0380240:intron | 40.0% | |
| TTGTTATACTCCGCATGGAT+GGG | - | chr3_1:81888402-81888421 | Msa0380240:intron | 40.0% | |
| TTCCTCCTACATCAGATTCT+TGG | - | chr3_1:81888564-81888583 | Msa0380240:intron | 40.0% | |
| TCCTCCTACATCAGATTCTT+GGG | - | chr3_1:81888565-81888584 | Msa0380240:intron | 40.0% | |
| TAAGTAGAGATAGCGACAAG+AGG | + | chr3_1:81888766-81888785 | None:intergenic | 40.0% | |
| TCTTGTCGCTATCTCTACTT+AGG | - | chr3_1:81888765-81888784 | Msa0380240:intron | 40.0% | |
| !! | TGTTGTCTCAAGCTTTGGAT+AGG | - | chr3_1:81888815-81888834 | Msa0380240:intron | 40.0% |
| CAATGACAGGCTTCTCTTTA+AGG | + | chr3_1:81888906-81888925 | None:intergenic | 40.0% | |
| AATTAACAGCTCAGTGGCAA+TGG | + | chr3_1:81889021-81889040 | None:intergenic | 40.0% | |
| AGACGTTGAACACGACTTTA+GGG | - | chr3_1:81889087-81889106 | Msa0380240:intron | 40.0% | |
| TCCGTCGCAAACATCATATA+TGG | + | chr3_1:81889262-81889281 | None:intergenic | 40.0% | |
| CACTAGAAGACACAGAGTTT+GGG | + | chr3_1:81889357-81889376 | None:intergenic | 40.0% | |
| ! | AGTCGCAATATTTGTTGGGA+CGG | + | chr3_1:81889395-81889414 | None:intergenic | 40.0% |
| CTACAAGACAAAAGGGACTT+TGG | + | chr3_1:81889497-81889516 | None:intergenic | 40.0% | |
| ! | TCCCTTTTGTCTTGTAGTGA+CGG | - | chr3_1:81889500-81889519 | Msa0380240:intron | 40.0% |
| TGCATAACCGATTAACGACA+TGG | - | chr3_1:81889841-81889860 | Msa0380240:exon | 40.0% | |
| !! | TCTTTTGGGAACCACATGTG+GGG | - | chr3_1:81885345-81885364 | Msa0380240:three_prime_UTR | 45.0% |
| GAATTGGTTGGAAACGAGCA+AGG | - | chr3_1:81885513-81885532 | Msa0380240:CDS | 45.0% | |
| GGACCACAAATTTCATGAGC+TGG | - | chr3_1:81885551-81885570 | Msa0380240:CDS | 45.0% | |
| ! | TCCGGTGGGAATATGCTTTT+TGG | - | chr3_1:81886151-81886170 | Msa0380240:CDS | 45.0% |
| GATTCTGCCTGAAAGGAGAT+TGG | + | chr3_1:81886226-81886245 | None:intergenic | 45.0% | |
| ATCTCCTTTCAGGCAGAATC+TGG | - | chr3_1:81886226-81886245 | Msa0380240:intron | 45.0% | |
| GACCTCAACTAAAGACTCCA+AGG | - | chr3_1:81886305-81886324 | Msa0380240:CDS | 45.0% | |
| ! | AAGACTCCAAGGTATTCCCA+CGG | - | chr3_1:81886316-81886335 | Msa0380240:CDS | 45.0% |
| TCTAAACCGTGGGAATACCT+TGG | + | chr3_1:81886325-81886344 | None:intergenic | 45.0% | |
| TAGTGCTTGTGGGTGTGAAA+AGG | - | chr3_1:81886664-81886683 | Msa0380240:intron | 45.0% | |
| TTGTGGGTGTGAAAAGGCAA+AGG | - | chr3_1:81886670-81886689 | Msa0380240:intron | 45.0% | |
| AGGCAAAGGTGGTCTTCAAA+TGG | - | chr3_1:81886684-81886703 | Msa0380240:intron | 45.0% | |
| GGTTCATGATGACAGGAAAC+TGG | + | chr3_1:81886844-81886863 | None:intergenic | 45.0% | |
| GTTCCATCAATTATCAGGCC+GGG | + | chr3_1:81888232-81888251 | None:intergenic | 45.0% | |
| GGCCTGATAATTGATGGAAC+TGG | - | chr3_1:81888232-81888251 | Msa0380240:intron | 45.0% | |
| GAGCAAGAGTGAGTTCAAAG+AGG | - | chr3_1:81888328-81888347 | Msa0380240:intron | 45.0% | |
| ATTCTATTAGGCATGGCTGC+TGG | - | chr3_1:81888362-81888381 | Msa0380240:intron | 45.0% | |
| CCCAATTGTTATACTCCGCA+TGG | - | chr3_1:81888397-81888416 | Msa0380240:intron | 45.0% | |
| TGTTATACTCCGCATGGATG+GGG | - | chr3_1:81888403-81888422 | Msa0380240:intron | 45.0% | |
| ACCCAAGAATCTGATGTAGG+AGG | + | chr3_1:81888569-81888588 | None:intergenic | 45.0% | |
| AAAGCTTGAGACAACAGTGC+CGG | + | chr3_1:81888811-81888830 | None:intergenic | 45.0% | |
| ! | CAAGAAAGTGGCATTGAGTG+TGG | - | chr3_1:81888873-81888892 | Msa0380240:intron | 45.0% |
| TCACTGTGAGCTACAATGAC+AGG | + | chr3_1:81888919-81888938 | None:intergenic | 45.0% | |
| ACGTCTGCATACAAGAGAGT+AGG | + | chr3_1:81889073-81889092 | None:intergenic | 45.0% | |
| CAGACGTTGAACACGACTTT+AGG | - | chr3_1:81889086-81889105 | Msa0380240:intron | 45.0% | |
| TCTTCAATTGCACCAACTGG+AGG | + | chr3_1:81889197-81889216 | None:intergenic | 45.0% | |
| ! | TCCAGTTGGTGCAATTGAAG+AGG | - | chr3_1:81889196-81889215 | Msa0380240:intron | 45.0% |
| ACCTCTTCAATTGCACCAAC+TGG | + | chr3_1:81889200-81889219 | None:intergenic | 45.0% | |
| CCACTAGAAGACACAGAGTT+TGG | + | chr3_1:81889358-81889377 | None:intergenic | 45.0% | |
| CCAAACTCTGTGTCTTCTAG+TGG | - | chr3_1:81889355-81889374 | Msa0380240:intron | 45.0% | |
| ! | AGACAAAAGGGACTTTGGGA+CGG | + | chr3_1:81889492-81889511 | None:intergenic | 45.0% |
| CCCGTCACTACAAGACAAAA+GGG | + | chr3_1:81889504-81889523 | None:intergenic | 45.0% | |
| ! | CCCTTTTGTCTTGTAGTGAC+GGG | - | chr3_1:81889501-81889520 | Msa0380240:intron | 45.0% |
| ACCCGTCACTACAAGACAAA+AGG | + | chr3_1:81889505-81889524 | None:intergenic | 45.0% | |
| TAACCGATTAACGACATGGC+TGG | - | chr3_1:81889845-81889864 | Msa0380240:exon | 45.0% | |
| TGACCAGCCATGTCGTTAAT+CGG | + | chr3_1:81889851-81889870 | None:intergenic | 45.0% | |
| !! | AATATAATTAATTAATCTTA+GGG | + | chr3_1:81886925-81886944 | None:intergenic | 5.0% |
| !! | AAATATAATTAATTAATCTT+AGG | + | chr3_1:81886926-81886945 | None:intergenic | 5.0% |
| GTTAAGTGTGTCCCCACATG+TGG | + | chr3_1:81885359-81885378 | None:intergenic | 50.0% | |
| GAAAACCAGAAGAGGAACGG+AGG | - | chr3_1:81885453-81885472 | Msa0380240:three_prime_UTR | 50.0% | |
| GAGCTGGATAAGGACAGAGA+TGG | - | chr3_1:81885567-81885586 | Msa0380240:CDS | 50.0% | |
| CTTGGTCAGGCCAAACACAA+AGG | + | chr3_1:81885927-81885946 | None:intergenic | 50.0% | |
| AGAAAGGGGCTAACTTGGTC+AGG | + | chr3_1:81885940-81885959 | None:intergenic | 50.0% | |
| CCATGATAACATGGTCGGTC+CGG | - | chr3_1:81886133-81886152 | Msa0380240:CDS | 50.0% | |
| GTCACCAGATTCTGCCTGAA+AGG | + | chr3_1:81886233-81886252 | None:intergenic | 50.0% | |
| TTCCCACGGTTTAGACCCTT+TGG | - | chr3_1:81886330-81886349 | Msa0380240:CDS | 50.0% | |
| TCCCACGGTTTAGACCCTTT+GGG | - | chr3_1:81886331-81886350 | Msa0380240:CDS | 50.0% | |
| TAGTCTCATAGCGGCCCAAA+GGG | + | chr3_1:81886348-81886367 | None:intergenic | 50.0% | |
| TTAGTCTCATAGCGGCCCAA+AGG | + | chr3_1:81886349-81886368 | None:intergenic | 50.0% | |
| TGGGTGTGAAAAGGCAAAGG+TGG | - | chr3_1:81886673-81886692 | Msa0380240:intron | 50.0% | |
| AAGAACGCAGCAAGTGTACC+AGG | - | chr3_1:81887360-81887379 | Msa0380240:intron | 50.0% | |
| GACATCCATTACGCACTCCA+AGG | - | chr3_1:81887479-81887498 | Msa0380240:intron | 50.0% | |
| ACTAATCCTCAAGTCGGCAG+CGG | - | chr3_1:81887539-81887558 | Msa0380240:intron | 50.0% | |
| ATGCCCGGCCTGATAATTGA+TGG | - | chr3_1:81888226-81888245 | Msa0380240:intron | 50.0% | |
| GAAGATCTTCCCCATCCATG+CGG | + | chr3_1:81888415-81888434 | None:intergenic | 50.0% | |
| GGAAGACTCGATGTTGATCG+AGG | - | chr3_1:81888539-81888558 | Msa0380240:intron | 50.0% | |
| GGCACTGTTGTCTCAAGCTT+TGG | - | chr3_1:81888810-81888829 | Msa0380240:intron | 50.0% | |
| CTTGCAGGTGACACTAGATG+TGG | - | chr3_1:81889151-81889170 | Msa0380240:intron | 50.0% | |
| ACTGGAGGTAAACCAGCAGA+TGG | + | chr3_1:81889182-81889201 | None:intergenic | 50.0% | |
| !! | TCTGCTGGTTTACCTCCAGT+TGG | - | chr3_1:81889182-81889201 | Msa0380240:intron | 50.0% |
| AACCAGAAGAGGAACGGAGG+AGG | - | chr3_1:81885456-81885475 | Msa0380240:three_prime_UTR | 55.0% | |
| GGAGGAGGAGAGGTTCTTGA+TGG | - | chr3_1:81885477-81885496 | Msa0380240:exon | 55.0% | |
| !! | AGCACCGATGTCAGCAACAG+CGG | + | chr3_1:81885619-81885638 | None:intergenic | 55.0% |
| !! | TGCTCTTGGTTTGCCTGCTC+AGG | - | chr3_1:81885638-81885657 | Msa0380240:CDS | 55.0% |
| !! | GCTCTTGGTTTGCCTGCTCA+GGG | - | chr3_1:81885639-81885658 | Msa0380240:CDS | 55.0% |
| CCGGACCGACCATGTTATCA+TGG | + | chr3_1:81886136-81886155 | None:intergenic | 55.0% | |
| TGATAACATGGTCGGTCCGG+TGG | - | chr3_1:81886136-81886155 | Msa0380240:CDS | 55.0% | |
| GATAACATGGTCGGTCCGGT+GGG | - | chr3_1:81886137-81886156 | Msa0380240:CDS | 55.0% | |
| GCCCAAAGGGTCTAAACCGT+GGG | + | chr3_1:81886335-81886354 | None:intergenic | 55.0% | |
| CTAATCCTCAAGTCGGCAGC+GGG | - | chr3_1:81887540-81887559 | Msa0380240:intron | 55.0% | |
| AACAGCTCAGTGGCAATGGC+AGG | + | chr3_1:81889017-81889036 | None:intergenic | 55.0% | |
| GATGTGGTGTCTCCATCTGC+TGG | - | chr3_1:81889167-81889186 | Msa0380240:intron | 55.0% | |
| CTCCTCCTCCGTTCCTCTTC+TGG | + | chr3_1:81885461-81885480 | None:intergenic | 60.0% | |
| CAGAAGAGGAACGGAGGAGG+AGG | - | chr3_1:81885459-81885478 | Msa0380240:three_prime_UTR | 60.0% | |
| AAGAGGAACGGAGGAGGAGG+AGG | - | chr3_1:81885462-81885481 | Msa0380240:three_prime_UTR | 60.0% | |
| ! | AGCGGGCTCAAGCTCCTTCA+AGG | + | chr3_1:81885601-81885620 | None:intergenic | 60.0% |
| GAGCCCGCTGTTGCTGACAT+CGG | - | chr3_1:81885612-81885631 | Msa0380240:CDS | 60.0% | |
| ! | GCACCGATGTCAGCAACAGC+GGG | + | chr3_1:81885618-81885637 | None:intergenic | 60.0% |
| !! | GCTGACATCGGTGCTGCTCT+TGG | - | chr3_1:81885624-81885643 | Msa0380240:CDS | 60.0% |
| TCAGGAGTAGTGCCCTGAGC+AGG | + | chr3_1:81885654-81885673 | None:intergenic | 60.0% | |
| GGCCCAAAGGGTCTAAACCG+TGG | + | chr3_1:81886336-81886355 | None:intergenic | 60.0% | |
| CCTTGAGTCTGCAGCTGCAG+CGG | - | chr3_1:81886370-81886389 | Msa0380240:CDS | 60.0% | |
| TGCAGCTGCAGCGGAACATC+CGG | - | chr3_1:81886379-81886398 | Msa0380240:CDS | 60.0% | |
| GAACGGAGGAGGAGGAGGAG+AGG | - | chr3_1:81885467-81885486 | Msa0380240:three_prime_UTR | 65.0% | |
| CCGCTGCAGCTGCAGACTCA+AGG | + | chr3_1:81886373-81886392 | None:intergenic | 65.0% | |
| !! | GATGTCCCGCTGCCGACTTG+AGG | + | chr3_1:81887548-81887567 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 81885306 | 81889996 | 81885306 | ID=Msa0380240;Name=Msa0380240 |
| chr3_1 | mRNA | 81885306 | 81889996 | 81885306 | ID=Msa0380240-mRNA-1;Parent=Msa0380240;Name=Msa0380240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=144|1|1|1|1|1|5|184|364 |
| chr3_1 | exon | 81885306 | 81885699 | 81885306 | ID=Msa0380240-mRNA-1:exon:20858;Parent=Msa0380240-mRNA-1 |
| chr3_1 | exon | 81886085 | 81886213 | 81886085 | ID=Msa0380240-mRNA-1:exon:20857;Parent=Msa0380240-mRNA-1 |
| chr3_1 | exon | 81886303 | 81886515 | 81886303 | ID=Msa0380240-mRNA-1:exon:20856;Parent=Msa0380240-mRNA-1 |
| chr3_1 | exon | 81886716 | 81887012 | 81886716 | ID=Msa0380240-mRNA-1:exon:20855;Parent=Msa0380240-mRNA-1 |
| chr3_1 | exon | 81889607 | 81889996 | 81889607 | ID=Msa0380240-mRNA-1:exon:20854;Parent=Msa0380240-mRNA-1 |
| chr3_1 | five_prime_UTR | 81889853 | 81889996 | 81889853 | ID=Msa0380240-mRNA-1:five_prime_utr;Parent=Msa0380240-mRNA-1 |
| chr3_1 | CDS | 81889607 | 81889852 | 81889607 | ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1 |
| chr3_1 | CDS | 81886716 | 81887012 | 81886716 | ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1 |
| chr3_1 | CDS | 81886303 | 81886515 | 81886303 | ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1 |
| chr3_1 | CDS | 81886085 | 81886213 | 81886085 | ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1 |
| chr3_1 | CDS | 81885490 | 81885699 | 81885490 | ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1 |
| chr3_1 | three_prime_UTR | 81885306 | 81885489 | 81885306 | ID=Msa0380240-mRNA-1:three_prime_utr;Parent=Msa0380240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
