AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380240 MtrunA17_Chr3g0145431 97.527 364 7 1 1 364 1 362 0.0 712
Msa0380240 MtrunA17_Chr4g0038631 74.114 367 86 4 4 364 7 370 0.0 541
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380240 AT4G38810.2 63.115 366 126 4 1 360 1 363 1.08e-162 460
Msa0380240 AT4G38810.1 59.375 256 95 4 111 360 1 253 1.04e-101 301
Msa0380240 AT5G28830.1 23.102 303 205 8 55 347 39 323 2.64e-11 64.3

Find 92 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGACAGGCTTCTCTTTA+AGG 0.119543 3_1:+81886377 None:intergenic
TTCATTATTCACCGTCTTAA+AGG 0.134887 3_1:+81885655 None:intergenic
CTCCTCCTCCGTTCCTCTTC+TGG 0.176059 3_1:+81889822 None:intergenic
TGCTCTTGGTTTGCCTGCTC+AGG 0.235368 3_1:-81889642 Msa0380240:CDS
GATATAATTGACATTTAAAT+AGG 0.241147 3_1:-81889968 Msa0380240:five_prime_UTR
CAGACGTTGAACACGACTTT+AGG 0.248256 3_1:-81886194 Msa0380240:CDS
TCTTGATGGCTCCAACATTA+TGG 0.250150 3_1:-81889789 Msa0380240:CDS
ATAGGAGTATGACTTTCTTT+TGG 0.264622 3_1:-81889950 Msa0380240:five_prime_UTR
TTCCTCCTACATCAGATTCT+TGG 0.291211 3_1:-81886716 Msa0380240:CDS
TCAACTCAACAATATTATTA+TGG 0.334349 3_1:+81889900 None:intergenic
GGCACTGTTGTCTCAAGCTT+TGG 0.358693 3_1:-81886470 Msa0380240:CDS
GAACTTGTTATTGAAGCTTT+TGG 0.363865 3_1:-81886762 Msa0380240:CDS
TGACCAGCCATGTCGTTAAT+CGG 0.385714 3_1:+81885432 None:intergenic
ACCTCTTCAATTGCACCAAC+TGG 0.390172 3_1:+81886083 None:intergenic
GTTCTCTCAGACATTCTATT+AGG 0.394979 3_1:-81886930 Msa0380240:CDS
AATATCAAAGGATTACTTGC+AGG 0.400730 3_1:-81886144 Msa0380240:CDS
TCCTCCTACATCAGATTCTT+GGG 0.401019 3_1:-81886715 Msa0380240:intron
GAACAAGAATCAGTAGTAGA+TGG 0.406004 3_1:-81889849 Msa0380240:exon
AATGTCTCTTGATCTCTAAC+AGG 0.406167 3_1:+81886442 None:intergenic
CTCTGATCACATCTACTATC+AGG 0.408189 3_1:-81889606 Msa0380240:intron
AGACGTTGAACACGACTTTA+GGG 0.414927 3_1:-81886193 Msa0380240:CDS
GCTCTTGGTTTGCCTGCTCA+GGG 0.416449 3_1:-81889641 Msa0380240:CDS
AGTGTAGAAGATGAGCTTAA+AGG 0.417154 3_1:+81885506 None:intergenic
TGGCTCCAACATTATGGAAT+TGG 0.417894 3_1:-81889783 Msa0380240:CDS
GATCTTCTTGAGTTTGTTAA+CGG 0.419045 3_1:-81886852 Msa0380240:CDS
GCTGACATCGGTGCTGCTCT+TGG 0.421869 3_1:-81889656 Msa0380240:CDS
AGTATCATGTTGCAGTTAGA+AGG 0.429901 3_1:-81885569 Msa0380240:CDS
AAGAGGAACGGAGGAGGAGG+AGG 0.433767 3_1:-81889818 Msa0380240:CDS
CAACAAGTTTGAATTAGAAA+AGG 0.439922 3_1:-81886302 Msa0380240:intron
CTGATTCTTGTTCTTTCTTG+TGG 0.440544 3_1:+81889859 None:intergenic
TATCCAGCTCATGAAATTTG+TGG 0.442680 3_1:+81889726 None:intergenic
GAACAAGAATAATATTAAGA+TGG 0.443655 3_1:+81885476 None:intergenic
TCCAACCAATTCCATAATGT+TGG 0.447482 3_1:+81889778 None:intergenic
TCCATGCGGAGTATAACAAT+TGG 0.449386 3_1:+81886882 None:intergenic
CTTGTGGTTTATTTGACTGA+GGG 0.459556 3_1:+81889875 None:intergenic
TTTGGAAGAATTCAAGAAAG+TGG 0.460032 3_1:-81886419 Msa0380240:CDS
CAGAAGAGGAACGGAGGAGG+AGG 0.464641 3_1:-81889821 Msa0380240:CDS
GGAGGAGGAGAGGTTCTTGA+TGG 0.474743 3_1:-81889803 Msa0380240:CDS
GTCATTTCTGTATAATAACT+TGG 0.474803 3_1:+81886828 None:intergenic
CAAATTTCATGAGCTGGATA+AGG 0.483471 3_1:-81889723 Msa0380240:CDS
AGCGGGCTCAAGCTCCTTCA+AGG 0.483560 3_1:+81889682 None:intergenic
TTGTTATACTCCGCATGGAT+GGG 0.487450 3_1:-81886878 Msa0380240:CDS
TAGTAGATGTGATCAGAGTC+AGG 0.489937 3_1:+81889611 None:intergenic
GCAAGGATTCAACAAGTTTG+TGG 0.490981 3_1:-81889750 Msa0380240:CDS
GGACCACAAATTTCATGAGC+TGG 0.499403 3_1:-81889729 Msa0380240:CDS
TGTTGTCTCAAGCTTTGGAT+AGG 0.500092 3_1:-81886465 Msa0380240:CDS
CGAGAAATTAAATATGATCC+AGG 0.503924 3_1:+81885367 None:intergenic
TCAGGAGTAGTGCCCTGAGC+AGG 0.508149 3_1:+81889629 None:intergenic
ATTCTATTAGGCATGGCTGC+TGG 0.509238 3_1:-81886918 Msa0380240:CDS
GCACCGATGTCAGCAACAGC+GGG 0.511448 3_1:+81889665 None:intergenic
TACCTATGCAAATTGTTACC+TGG 0.513205 3_1:-81885385 Msa0380240:three_prime_UTR
AACCAGAAGAGGAACGGAGG+AGG 0.517853 3_1:-81889824 Msa0380240:CDS
TCACTGTGAGCTACAATGAC+AGG 0.521245 3_1:+81886364 None:intergenic
ATTGTTATACTCCGCATGGA+TGG 0.523821 3_1:-81886879 Msa0380240:CDS
AACAAGAATAATATTAAGAT+GGG 0.524551 3_1:+81885477 None:intergenic
TCTTGTGGTTTATTTGACTG+AGG 0.524629 3_1:+81889874 None:intergenic
TCTGCTGGTTTACCTCCAGT+TGG 0.524964 3_1:-81886098 Msa0380240:CDS
CTCAGACATTCTATTAGGCA+TGG 0.528189 3_1:-81886925 Msa0380240:CDS
GATGTGGTGTCTCCATCTGC+TGG 0.529207 3_1:-81886113 Msa0380240:CDS
GAGCCCGCTGTTGCTGACAT+CGG 0.531602 3_1:-81889668 Msa0380240:CDS
CCATGCGGAGTATAACAATT+GGG 0.533794 3_1:+81886883 None:intergenic
AGATGGTAAACTCTCCTTGA+AGG 0.538224 3_1:-81889696 Msa0380240:CDS
TGTTATACTCCGCATGGATG+GGG 0.540149 3_1:-81886877 Msa0380240:CDS
AAGCTTCAATAACAAGTTCG+CGG 0.551585 3_1:+81886766 None:intergenic
GAATTTGAAGAAACAGCAAT+GGG 0.554960 3_1:+81885542 None:intergenic
CCCAATTGTTATACTCCGCA+TGG 0.557293 3_1:-81886883 Msa0380240:CDS
GTGTTGAATGAATTCACTCA+TGG 0.557877 3_1:-81886990 Msa0380240:CDS
TCCAACATTATGGAATTGGT+TGG 0.565142 3_1:-81889779 Msa0380240:CDS
TAACCGATTAACGACATGGC+TGG 0.572052 3_1:-81885435 Msa0380240:three_prime_UTR
TGAATTTGAAGAAACAGCAA+TGG 0.575925 3_1:+81885541 None:intergenic
AGCACCGATGTCAGCAACAG+CGG 0.580542 3_1:+81889664 None:intergenic
ATTACCCAAGAATCTGATGT+AGG 0.586136 3_1:+81886711 None:intergenic
GAATTGGTTGGAAACGAGCA+AGG 0.589020 3_1:-81889767 Msa0380240:CDS
TATTAGTGAAGCCTTTAAGA+CGG 0.589119 3_1:-81885666 Msa0380240:CDS
AGTAGATGGAAAACCAGAAG+AGG 0.593555 3_1:-81889835 Msa0380240:exon
AAAGCTTGAGACAACAGTGC+CGG 0.602253 3_1:+81886472 None:intergenic
GGAAGACTCGATGTTGATCG+AGG 0.609171 3_1:-81886741 Msa0380240:CDS
TCCAGTTGGTGCAATTGAAG+AGG 0.610698 3_1:-81886084 Msa0380240:intron
ACTGGAGGTAAACCAGCAGA+TGG 0.614242 3_1:+81886101 None:intergenic
ACCCAAGAATCTGATGTAGG+AGG 0.614585 3_1:+81886714 None:intergenic
GTTAAGTGTGTCCCCACATG+TGG 0.623821 3_1:+81889924 None:intergenic
TGCATAACCGATTAACGACA+TGG 0.635170 3_1:-81885439 Msa0380240:three_prime_UTR
CAAGAAAGTGGCATTGAGTG+TGG 0.640256 3_1:-81886407 Msa0380240:CDS
ATGGAAAACCAGAAGAGGAA+CGG 0.642985 3_1:-81889830 Msa0380240:CDS
TCTTCAATTGCACCAACTGG+AGG 0.650559 3_1:+81886086 None:intergenic
GAGCAAGAGTGAGTTCAAAG+AGG 0.651775 3_1:-81886952 Msa0380240:CDS
ATCCAGGTAACAATTTGCAT+AGG 0.662558 3_1:+81885383 None:intergenic
AATCTGCCAAAAGATCGAAA+CGG 0.663483 3_1:-81886170 Msa0380240:CDS
GAAAACCAGAAGAGGAACGG+AGG 0.663724 3_1:-81889827 Msa0380240:CDS
GAGCTGGATAAGGACAGAGA+TGG 0.674340 3_1:-81889713 Msa0380240:CDS
GAAGATCTTCCCCATCCATG+CGG 0.725608 3_1:+81886868 None:intergenic
CTTGCAGGTGACACTAGATG+TGG 0.729256 3_1:-81886129 Msa0380240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTTATCAATGTAT+TGG - chr3_1:81885873-81885892 Msa0380240:intron 10.0%
!! CAAAAATATAAATAATCTTA+AGG + chr3_1:81888102-81888121 None:intergenic 10.0%
!!! AAAATTTTAATTGAAATACT+GGG - chr3_1:81889687-81889706 Msa0380240:CDS 10.0%
!! GATATAATTGACATTTAAAT+AGG - chr3_1:81885312-81885331 Msa0380240:three_prime_UTR 15.0%
!! ATTACATAATAAAAAGAGAA+AGG + chr3_1:81885707-81885726 None:intergenic 15.0%
!! AACATATATATTACCAATAT+GGG + chr3_1:81886424-81886443 None:intergenic 15.0%
!! AAACATATATATTACCAATA+TGG + chr3_1:81886425-81886444 None:intergenic 15.0%
!! ATAGATAGATAATTGATAAA+TGG - chr3_1:81886815-81886834 Msa0380240:CDS 15.0%
!! AAAACCTATACTTATTTATA+CGG + chr3_1:81886888-81886907 None:intergenic 15.0%
!!! AATTTCTAAAAATTAAGACT+GGG - chr3_1:81887002-81887021 Msa0380240:intron 15.0%
!! TTTATTATTCAACTCAAAAT+GGG + chr3_1:81887399-81887418 None:intergenic 15.0%
!! ATTTATTATTCAACTCAAAA+TGG + chr3_1:81887400-81887419 None:intergenic 15.0%
!!! ACTTTGATATATTTTATTTG+TGG - chr3_1:81889042-81889061 Msa0380240:intron 15.0%
!!! GAAAATTTTAATTGAAATAC+TGG - chr3_1:81889686-81889705 Msa0380240:CDS 15.0%
!!! AAATTTTAATTGAAATACTG+GGG - chr3_1:81889688-81889707 Msa0380240:CDS 15.0%
!! AACAAGAATAATATTAAGAT+GGG + chr3_1:81889806-81889825 None:intergenic 15.0%
!! GTAAATAAAAATATTGTACT+TGG + chr3_1:81889878-81889897 None:intergenic 15.0%
!! TCAACTCAACAATATTATTA+TGG + chr3_1:81885383-81885402 None:intergenic 20.0%
!! GTTATCATGGATAATTAATT+AGG + chr3_1:81886123-81886142 None:intergenic 20.0%
!! ATTAATTATCCATGATAACA+TGG - chr3_1:81886124-81886143 Msa0380240:CDS 20.0%
!! GTCAAAAATCATAATTACAA+TGG + chr3_1:81886288-81886307 None:intergenic 20.0%
!! GTGATATAAACTTATAAAGT+TGG - chr3_1:81886565-81886584 Msa0380240:intron 20.0%
!!! AAAATCTGATTTGATCAAAT+AGG + chr3_1:81886865-81886884 None:intergenic 20.0%
!!! TTTTCCGTATAAATAAGTAT+AGG - chr3_1:81886881-81886900 Msa0380240:CDS 20.0%
!!! CAATTTCTAAAAATTAAGAC+TGG - chr3_1:81887001-81887020 Msa0380240:intron 20.0%
!! TCTGAATATGTATGTTAAAA+TGG - chr3_1:81887124-81887143 Msa0380240:intron 20.0%
!! TTATTATTCAACTCAAAATG+GGG + chr3_1:81887398-81887417 None:intergenic 20.0%
!! TTATTAGAGTGATAAAAAGT+TGG - chr3_1:81887673-81887692 Msa0380240:intron 20.0%
!! TAACCAAATATGGTAAATAT+GGG - chr3_1:81887833-81887852 Msa0380240:intron 20.0%
!! ATGATTATATATCAATGATG+TGG - chr3_1:81886788-81886807 Msa0380240:CDS 20.0%
!! ATCTTAAGGAAAACAATATA+CGG + chr3_1:81888088-81888107 None:intergenic 20.0%
!! TATTGATCTTGAAAATACAA+TGG + chr3_1:81888146-81888165 None:intergenic 20.0%
!! GAACAAGAATAAAAATTTGA+TGG - chr3_1:81888254-81888273 Msa0380240:intron 20.0%
!! GAACAAGAATAATATTAAGA+TGG + chr3_1:81889807-81889826 None:intergenic 20.0%
! CATGGATAATTAATTAGGAT+AGG + chr3_1:81886118-81886137 None:intergenic 25.0%
! ATAAAAAGCAAAATTGAGCA+GGG + chr3_1:81886190-81886209 None:intergenic 25.0%
! AATAAAAAGCAAAATTGAGC+AGG + chr3_1:81886191-81886210 None:intergenic 25.0%
!!! TTTTTTCTTCTTCTTCTTCT+AGG - chr3_1:81886262-81886281 Msa0380240:intron 25.0%
! AGTATATGCTAAAACATTGA+CGG - chr3_1:81886458-81886477 Msa0380240:CDS 25.0%
!! CTTCAAGTTCAAAGATTAAA+CGG + chr3_1:81886490-81886509 None:intergenic 25.0%
! TTAATGTAATGATGAACTCA+AGG - chr3_1:81886601-81886620 Msa0380240:intron 25.0%
! TAATGTAATGATGAACTCAA+GGG - chr3_1:81886602-81886621 Msa0380240:intron 25.0%
! ATCTTAGGGAAAACAATATA+GGG + chr3_1:81886911-81886930 None:intergenic 25.0%
! AATCTTAGGGAAAACAATAT+AGG + chr3_1:81886912-81886931 None:intergenic 25.0%
! TACTGAATTTGAAAATGCAA+TGG + chr3_1:81886973-81886992 None:intergenic 25.0%
! TATGTATGTTAAAATGGATG+TGG - chr3_1:81887130-81887149 Msa0380240:intron 25.0%
! TATCTAGGCAAAACATTATA+GGG + chr3_1:81887318-81887337 None:intergenic 25.0%
! ATATCTAGGCAAAACATTAT+AGG + chr3_1:81887319-81887338 None:intergenic 25.0%
! TACTTTATGCTACAATATCT+AGG + chr3_1:81887333-81887352 None:intergenic 25.0%
! AGGCAAAATTGATCTTTAAA+TGG - chr3_1:81887778-81887797 Msa0380240:intron 25.0%
! ATCTTTAAATGGAATCCTTT+GGG - chr3_1:81887789-81887808 Msa0380240:intron 25.0%
! CATATTTACCATATTTGGTT+AGG + chr3_1:81887834-81887853 None:intergenic 25.0%
! CTAACCAAATATGGTAAATA+TGG - chr3_1:81887832-81887851 Msa0380240:intron 25.0%
! ATAAAAGATACCTTAGAAAC+AGG - chr3_1:81887865-81887884 Msa0380240:intron 25.0%
! TAAAAGATACCTTAGAAACA+GGG - chr3_1:81887866-81887885 Msa0380240:intron 25.0%
!!! TCATGTGCAGAAATTTTAAT+AGG + chr3_1:81888204-81888223 None:intergenic 25.0%
! GTCATTTCTGTATAATAACT+TGG + chr3_1:81888455-81888474 None:intergenic 25.0%
!! TTAGGTTTTTAACAACATTG+TGG - chr3_1:81888783-81888802 Msa0380240:intron 25.0%
!! CTTTTCTAATTCAAACTTGT+TGG + chr3_1:81888980-81888999 None:intergenic 25.0%
! CAACAAGTTTGAATTAGAAA+AGG - chr3_1:81888978-81888997 Msa0380240:intron 25.0%
!! ATATACTGACTAATATGCAT+TGG + chr3_1:81889235-81889254 None:intergenic 25.0%
! AATTTAATCAGACATTGTGA+TGG + chr3_1:81889330-81889349 None:intergenic 25.0%
!!! TTTGATTTTACAGATGGATA+AGG - chr3_1:81889590-81889609 Msa0380240:intron 25.0%
!! ATAGGAGTATGACTTTCTTT+TGG - chr3_1:81885330-81885349 Msa0380240:three_prime_UTR 30.0%
!! TAGGAGTATGACTTTCTTTT+GGG - chr3_1:81885331-81885350 Msa0380240:three_prime_UTR 30.0%
GAAAGAAATTCCTTTGTGTT+TGG - chr3_1:81885914-81885933 Msa0380240:intron 30.0%
ACCACATACACAAAAAGAAA+GGG + chr3_1:81885955-81885974 None:intergenic 30.0%
AACCACATACACAAAAAGAA+AGG + chr3_1:81885956-81885975 None:intergenic 30.0%
ATGTGATACTTTATAGAAGC+TGG - chr3_1:81886080-81886099 Msa0380240:intron 30.0%
ATTATCCATGATAACATGGT+CGG - chr3_1:81886128-81886147 Msa0380240:CDS 30.0%
AGACAGACTAATGAAAAAAC+CGG + chr3_1:81886401-81886420 None:intergenic 30.0%
TCAGTTAGCACTAGTAATTT+GGG + chr3_1:81886634-81886653 None:intergenic 30.0%
ATCAGTTAGCACTAGTAATT+TGG + chr3_1:81886635-81886654 None:intergenic 30.0%
TTATGCGTCTTTACCATATT+TGG + chr3_1:81886729-81886748 None:intergenic 30.0%
ATATGGTAAAGACGCATAAA+AGG - chr3_1:81886730-81886749 Msa0380240:CDS 30.0%
TTTCCATGAGATATCTATCT+AGG - chr3_1:81887166-81887185 Msa0380240:intron 30.0%
TTCCATGAGATATCTATCTA+GGG - chr3_1:81887167-81887186 Msa0380240:intron 30.0%
ATCTAGGCAAAACATTATAG+GGG + chr3_1:81887317-81887336 None:intergenic 30.0%
TTTAAGCCGTAATTATACCT+TGG + chr3_1:81887499-81887518 None:intergenic 30.0%
TGTCACTCATGTGAAAAAAT+CGG + chr3_1:81887570-81887589 None:intergenic 30.0%
GATCTTTAAATGGAATCCTT+TGG - chr3_1:81887788-81887807 Msa0380240:intron 30.0%
GTTCCCATATTTACCATATT+TGG + chr3_1:81887839-81887858 None:intergenic 30.0%
!!! TTTTTTTCTCCCTGTTTCTA+AGG + chr3_1:81887878-81887897 None:intergenic 30.0%
AACAGGGAGAAAAAAAATAG+AGG - chr3_1:81887882-81887901 Msa0380240:intron 30.0%
TTCATGATGACAGTAAACTT+AGG + chr3_1:81887955-81887974 None:intergenic 30.0%
TACAGATTGTATGATTGCAT+AGG + chr3_1:81887978-81887997 None:intergenic 30.0%
!! GGAGAGCTCATATTTTTATT+CGG + chr3_1:81888067-81888086 None:intergenic 30.0%
!! ATTTGATGGACTTGTTGTAT+AGG - chr3_1:81888268-81888287 Msa0380240:intron 30.0%
!! GATCTTCTTGAGTTTGTTAA+CGG - chr3_1:81888428-81888447 Msa0380240:intron 30.0%
!! GTTTTGAATCTGAGAGAATA+TGG + chr3_1:81888480-81888499 None:intergenic 30.0%
!!! GAACTTGTTATTGAAGCTTT+TGG - chr3_1:81888518-81888537 Msa0380240:intron 30.0%
! TTTTAACAACATTGTGGATC+CGG - chr3_1:81888789-81888808 Msa0380240:intron 30.0%
! TAGAGATCAAGAGACATTTT+TGG - chr3_1:81888843-81888862 Msa0380240:intron 30.0%
TTTGGAAGAATTCAAGAAAG+TGG - chr3_1:81888861-81888880 Msa0380240:intron 30.0%
! ATTTTTCCGTTTCGATCTTT+TGG + chr3_1:81889119-81889138 None:intergenic 30.0%
TCGAAACGGAAAAATATCAA+AGG - chr3_1:81889124-81889143 Msa0380240:intron 30.0%
AATATCAAAGGATTACTTGC+AGG - chr3_1:81889136-81889155 Msa0380240:intron 30.0%
! ATATCAATCTGTCTCCATTT+TGG - chr3_1:81889287-81889306 Msa0380240:intron 30.0%
TTTCAGTCGCAATATTTGTT+GGG + chr3_1:81889399-81889418 None:intergenic 30.0%
ATTTCAGTCGCAATATTTGT+TGG + chr3_1:81889400-81889419 None:intergenic 30.0%
!! GATGTGTTTGATTTTACAGA+TGG - chr3_1:81889584-81889603 Msa0380240:intron 30.0%
! TATTAGTGAAGCCTTTAAGA+CGG - chr3_1:81889614-81889633 Msa0380240:CDS 30.0%
TTCATTATTCACCGTCTTAA+AGG + chr3_1:81889628-81889647 None:intergenic 30.0%
GAATTTGAAGAAACAGCAAT+GGG + chr3_1:81889741-81889760 None:intergenic 30.0%
TGAATTTGAAGAAACAGCAA+TGG + chr3_1:81889742-81889761 None:intergenic 30.0%
CGAGAAATTAAATATGATCC+AGG + chr3_1:81889916-81889935 None:intergenic 30.0%
CTTGTGGTTTATTTGACTGA+GGG + chr3_1:81885408-81885427 None:intergenic 35.0%
TCTTGTGGTTTATTTGACTG+AGG + chr3_1:81885409-81885428 None:intergenic 35.0%
CTGATTCTTGTTCTTTCTTG+TGG + chr3_1:81885424-81885443 None:intergenic 35.0%
GAACAAGAATCAGTAGTAGA+TGG - chr3_1:81885431-81885450 Msa0380240:three_prime_UTR 35.0%
TCCAACATTATGGAATTGGT+TGG - chr3_1:81885501-81885520 Msa0380240:CDS 35.0%
TCCAACCAATTCCATAATGT+TGG + chr3_1:81885505-81885524 None:intergenic 35.0%
TATCCAGCTCATGAAATTTG+TGG + chr3_1:81885557-81885576 None:intergenic 35.0%
CAAATTTCATGAGCTGGATA+AGG - chr3_1:81885557-81885576 Msa0380240:CDS 35.0%
!! GTTGCTCTTCACTTTTGTTT+TGG - chr3_1:81885775-81885794 Msa0380240:intron 35.0%
CCACATACACAAAAAGAAAG+GGG + chr3_1:81885954-81885973 None:intergenic 35.0%
TTGAAGACGAATTCTGAACT+TGG - chr3_1:81886013-81886032 Msa0380240:intron 35.0%
AATTAGGATAGGACACTTCT+GGG + chr3_1:81886107-81886126 None:intergenic 35.0%
TAATTAGGATAGGACACTTC+TGG + chr3_1:81886108-81886127 None:intergenic 35.0%
AAAGGAGATTGGCAGAAAAA+TGG + chr3_1:81886215-81886234 None:intergenic 35.0%
TAATGATGAACTCAAGGGAA+GGG - chr3_1:81886607-81886626 Msa0380240:intron 35.0%
! ATATCTGAAGTTAGTGCTTG+TGG - chr3_1:81886653-81886672 Msa0380240:intron 35.0%
! TATCTGAAGTTAGTGCTTGT+GGG - chr3_1:81886654-81886673 Msa0380240:intron 35.0%
TTACCATATTTGGTAAGGCA+AGG + chr3_1:81886719-81886738 None:intergenic 35.0%
CGTCTTTACCATATTTGGTA+AGG + chr3_1:81886724-81886743 None:intergenic 35.0%
! TTTTTGTCTTTCTGTGGCTA+AGG + chr3_1:81886758-81886777 None:intergenic 35.0%
!!! CCTCTATTTTTGTCTTTCTG+TGG + chr3_1:81886764-81886783 None:intergenic 35.0%
CCACAGAAAGACAAAAATAG+AGG - chr3_1:81886761-81886780 Msa0380240:CDS 35.0%
TCAAATAGGTTCATGATGAC+AGG + chr3_1:81886851-81886870 None:intergenic 35.0%
TCCATGAGATATCTATCTAG+GGG - chr3_1:81887168-81887187 Msa0380240:intron 35.0%
TAGACAAGTGTCTGTTATGA+AGG - chr3_1:81887262-81887281 Msa0380240:intron 35.0%
AGTCTCATAGAGGATTCAAA+TGG + chr3_1:81887522-81887541 None:intergenic 35.0%
TATGAGACTAATCCTCAAGT+CGG - chr3_1:81887533-81887552 Msa0380240:intron 35.0%
TAAGTGGTATGAGTCATCAA+TGG + chr3_1:81887628-81887647 None:intergenic 35.0%
! TACCACTTAGTCTTTGAACT+TGG - chr3_1:81887639-81887658 Msa0380240:intron 35.0%
ACACATTTGCTTTATCCCAA+AGG + chr3_1:81887807-81887826 None:intergenic 35.0%
GTGTCTTACCTAACCAAATA+TGG - chr3_1:81887823-81887842 Msa0380240:intron 35.0%
GTGGTCAGATATTTGATGAA+TGG - chr3_1:81887928-81887947 Msa0380240:intron 35.0%
!!! GTTGTCTAGTTTTGATCGAA+TGG + chr3_1:81888009-81888028 None:intergenic 35.0%
GGACACGCATAAATTATTGA+AGG + chr3_1:81888183-81888202 None:intergenic 35.0%
TTCCAGTTCCATCAATTATC+AGG + chr3_1:81888237-81888256 None:intergenic 35.0%
GTGTTGAATGAATTCACTCA+TGG - chr3_1:81888290-81888309 Msa0380240:intron 35.0%
GTTCTCTCAGACATTCTATT+AGG - chr3_1:81888350-81888369 Msa0380240:intron 35.0%
AAGCTTCAATAACAAGTTCG+CGG + chr3_1:81888517-81888536 None:intergenic 35.0%
ATTACCCAAGAATCTGATGT+AGG + chr3_1:81888572-81888591 None:intergenic 35.0%
ACACAACATGTTTCAATGCA+AGG + chr3_1:81888623-81888642 None:intergenic 35.0%
AATGTCTCTTGATCTCTAAC+AGG + chr3_1:81888841-81888860 None:intergenic 35.0%
! CACAGTGAAAACACTTTTGA+TGG - chr3_1:81888931-81888950 Msa0380240:intron 35.0%
! GAAAACACTTTTGATGGAAG+TGG - chr3_1:81888937-81888956 Msa0380240:intron 35.0%
AAAGTGAATTAACAGCTCAG+TGG + chr3_1:81889027-81889046 None:intergenic 35.0%
AATCTGCCAAAAGATCGAAA+CGG - chr3_1:81889110-81889129 Msa0380240:intron 35.0%
TCCATATATGATGTTTGCGA+CGG - chr3_1:81889258-81889277 Msa0380240:intron 35.0%
CCTTTGAATCTGTTCCAAAA+TGG + chr3_1:81889304-81889323 None:intergenic 35.0%
!!! CCATTTTGGAACAGATTCAA+AGG - chr3_1:81889301-81889320 Msa0380240:intron 35.0%
!! TCTCGTCACAACTCATTTTT+GGG + chr3_1:81889442-81889461 None:intergenic 35.0%
! ATCTCGTCACAACTCATTTT+TGG + chr3_1:81889443-81889462 None:intergenic 35.0%
TACAAGACAAAAGGGACTTT+GGG + chr3_1:81889496-81889515 None:intergenic 35.0%
AGTATCATGTTGCAGTTAGA+AGG - chr3_1:81889711-81889730 Msa0380240:CDS 35.0%
AGTGTAGAAGATGAGCTTAA+AGG + chr3_1:81889777-81889796 None:intergenic 35.0%
TACCTATGCAAATTGTTACC+TGG - chr3_1:81889895-81889914 Msa0380240:five_prime_UTR 35.0%
ATCCAGGTAACAATTTGCAT+AGG + chr3_1:81889900-81889919 None:intergenic 35.0%
!! TTTCTTTTGGGAACCACATG+TGG - chr3_1:81885343-81885362 Msa0380240:three_prime_UTR 40.0%
!! TTCTTTTGGGAACCACATGT+GGG - chr3_1:81885344-81885363 Msa0380240:three_prime_UTR 40.0%
AGTAGATGGAAAACCAGAAG+AGG - chr3_1:81885445-81885464 Msa0380240:three_prime_UTR 40.0%
ATGGAAAACCAGAAGAGGAA+CGG - chr3_1:81885450-81885469 Msa0380240:three_prime_UTR 40.0%
! TCTTGATGGCTCCAACATTA+TGG - chr3_1:81885491-81885510 Msa0380240:CDS 40.0%
TGGCTCCAACATTATGGAAT+TGG - chr3_1:81885497-81885516 Msa0380240:CDS 40.0%
GCAAGGATTCAACAAGTTTG+TGG - chr3_1:81885530-81885549 Msa0380240:CDS 40.0%
AGATGGTAAACTCTCCTTGA+AGG - chr3_1:81885584-81885603 Msa0380240:CDS 40.0%
TAGTAGATGTGATCAGAGTC+AGG + chr3_1:81885672-81885691 None:intergenic 40.0%
CTCTGATCACATCTACTATC+AGG - chr3_1:81885674-81885693 Msa0380240:CDS 40.0%
CAAAAAGAAAGGGGCTAACT+TGG + chr3_1:81885945-81885964 None:intergenic 40.0%
! CCCCTTTCTTTTTGTGTATG+TGG - chr3_1:81885951-81885970 Msa0380240:intron 40.0%
ATTAGGATAGGACACTTCTG+GGG + chr3_1:81886106-81886125 None:intergenic 40.0%
! ACCAAAAAGCATATTCCCAC+CGG + chr3_1:81886155-81886174 None:intergenic 40.0%
! TTTTCTGCCAATCTCCTTTC+AGG - chr3_1:81886216-81886235 Msa0380240:intron 40.0%
TACCTTGGAGTCTTTAGTTG+AGG + chr3_1:81886310-81886329 None:intergenic 40.0%
!! CTCAAGGATTAGTCTCATAG+CGG + chr3_1:81886357-81886376 None:intergenic 40.0%
! CATTAGTCTGTCTCCCATAT+TGG - chr3_1:81886408-81886427 Msa0380240:CDS 40.0%
GTAATGATGAACTCAAGGGA+AGG - chr3_1:81886606-81886625 Msa0380240:intron 40.0%
TATTTGGTAAGGCAAGGCAA+AGG + chr3_1:81886713-81886732 None:intergenic 40.0%
TTGCCTTGCCTTACCAAATA+TGG - chr3_1:81886713-81886732 Msa0380240:intron 40.0%
TTCATGATGACAGGAAACTG+GGG + chr3_1:81886842-81886861 None:intergenic 40.0%
GTTCATGATGACAGGAAACT+GGG + chr3_1:81886843-81886862 None:intergenic 40.0%
ATTAAGACTGGGAAGACGTT+TGG - chr3_1:81887013-81887032 Msa0380240:intron 40.0%
TCCCCTAGATAGATATCTCA+TGG + chr3_1:81887172-81887191 None:intergenic 40.0%
! GGGCATTTGAATGAGCTTTT+TGG + chr3_1:81887297-81887316 None:intergenic 40.0%
!!! ATGGGGAAACTTATTTTGCC+TGG + chr3_1:81887381-81887400 None:intergenic 40.0%
TTATACCTTGGAGTGCGTAA+TGG + chr3_1:81887487-81887506 None:intergenic 40.0%
CGCACTCCAAGGTATAATTA+CGG - chr3_1:81887490-81887509 Msa0380240:intron 40.0%
!! CTTGAGGATTAGTCTCATAG+AGG + chr3_1:81887532-81887551 None:intergenic 40.0%
CTCCAAGTTCAAAGACTAAG+TGG + chr3_1:81887644-81887663 None:intergenic 40.0%
GCAGTTAGCACTAGCAATTA+GGG + chr3_1:81887732-81887751 None:intergenic 40.0%
AGCAGTTAGCACTAGCAATT+AGG + chr3_1:81887733-81887752 None:intergenic 40.0%
! ATCTGAAGTTAGTGCTTGTG+TGG - chr3_1:81886655-81886674 Msa0380240:intron 40.0%
AAGTTAGTGCTTGTGTGGAA+AGG - chr3_1:81887758-81887777 Msa0380240:intron 40.0%
TTTCTGCACATGAATATGCC+CGG - chr3_1:81888211-81888230 Msa0380240:intron 40.0%
AGTTCCATCAATTATCAGGC+CGG + chr3_1:81888233-81888252 None:intergenic 40.0%
CTCAGACATTCTATTAGGCA+TGG - chr3_1:81888355-81888374 Msa0380240:intron 40.0%
CCATGCGGAGTATAACAATT+GGG + chr3_1:81888400-81888419 None:intergenic 40.0%
TCCATGCGGAGTATAACAAT+TGG + chr3_1:81888401-81888420 None:intergenic 40.0%
ATTGTTATACTCCGCATGGA+TGG - chr3_1:81888401-81888420 Msa0380240:intron 40.0%
TTGTTATACTCCGCATGGAT+GGG - chr3_1:81888402-81888421 Msa0380240:intron 40.0%
TTCCTCCTACATCAGATTCT+TGG - chr3_1:81888564-81888583 Msa0380240:intron 40.0%
TCCTCCTACATCAGATTCTT+GGG - chr3_1:81888565-81888584 Msa0380240:intron 40.0%
TAAGTAGAGATAGCGACAAG+AGG + chr3_1:81888766-81888785 None:intergenic 40.0%
TCTTGTCGCTATCTCTACTT+AGG - chr3_1:81888765-81888784 Msa0380240:intron 40.0%
!! TGTTGTCTCAAGCTTTGGAT+AGG - chr3_1:81888815-81888834 Msa0380240:intron 40.0%
CAATGACAGGCTTCTCTTTA+AGG + chr3_1:81888906-81888925 None:intergenic 40.0%
AATTAACAGCTCAGTGGCAA+TGG + chr3_1:81889021-81889040 None:intergenic 40.0%
AGACGTTGAACACGACTTTA+GGG - chr3_1:81889087-81889106 Msa0380240:intron 40.0%
TCCGTCGCAAACATCATATA+TGG + chr3_1:81889262-81889281 None:intergenic 40.0%
CACTAGAAGACACAGAGTTT+GGG + chr3_1:81889357-81889376 None:intergenic 40.0%
! AGTCGCAATATTTGTTGGGA+CGG + chr3_1:81889395-81889414 None:intergenic 40.0%
CTACAAGACAAAAGGGACTT+TGG + chr3_1:81889497-81889516 None:intergenic 40.0%
! TCCCTTTTGTCTTGTAGTGA+CGG - chr3_1:81889500-81889519 Msa0380240:intron 40.0%
TGCATAACCGATTAACGACA+TGG - chr3_1:81889841-81889860 Msa0380240:exon 40.0%
!! TCTTTTGGGAACCACATGTG+GGG - chr3_1:81885345-81885364 Msa0380240:three_prime_UTR 45.0%
GAATTGGTTGGAAACGAGCA+AGG - chr3_1:81885513-81885532 Msa0380240:CDS 45.0%
GGACCACAAATTTCATGAGC+TGG - chr3_1:81885551-81885570 Msa0380240:CDS 45.0%
! TCCGGTGGGAATATGCTTTT+TGG - chr3_1:81886151-81886170 Msa0380240:CDS 45.0%
GATTCTGCCTGAAAGGAGAT+TGG + chr3_1:81886226-81886245 None:intergenic 45.0%
ATCTCCTTTCAGGCAGAATC+TGG - chr3_1:81886226-81886245 Msa0380240:intron 45.0%
GACCTCAACTAAAGACTCCA+AGG - chr3_1:81886305-81886324 Msa0380240:CDS 45.0%
! AAGACTCCAAGGTATTCCCA+CGG - chr3_1:81886316-81886335 Msa0380240:CDS 45.0%
TCTAAACCGTGGGAATACCT+TGG + chr3_1:81886325-81886344 None:intergenic 45.0%
TAGTGCTTGTGGGTGTGAAA+AGG - chr3_1:81886664-81886683 Msa0380240:intron 45.0%
TTGTGGGTGTGAAAAGGCAA+AGG - chr3_1:81886670-81886689 Msa0380240:intron 45.0%
AGGCAAAGGTGGTCTTCAAA+TGG - chr3_1:81886684-81886703 Msa0380240:intron 45.0%
GGTTCATGATGACAGGAAAC+TGG + chr3_1:81886844-81886863 None:intergenic 45.0%
GTTCCATCAATTATCAGGCC+GGG + chr3_1:81888232-81888251 None:intergenic 45.0%
GGCCTGATAATTGATGGAAC+TGG - chr3_1:81888232-81888251 Msa0380240:intron 45.0%
GAGCAAGAGTGAGTTCAAAG+AGG - chr3_1:81888328-81888347 Msa0380240:intron 45.0%
ATTCTATTAGGCATGGCTGC+TGG - chr3_1:81888362-81888381 Msa0380240:intron 45.0%
CCCAATTGTTATACTCCGCA+TGG - chr3_1:81888397-81888416 Msa0380240:intron 45.0%
TGTTATACTCCGCATGGATG+GGG - chr3_1:81888403-81888422 Msa0380240:intron 45.0%
ACCCAAGAATCTGATGTAGG+AGG + chr3_1:81888569-81888588 None:intergenic 45.0%
AAAGCTTGAGACAACAGTGC+CGG + chr3_1:81888811-81888830 None:intergenic 45.0%
! CAAGAAAGTGGCATTGAGTG+TGG - chr3_1:81888873-81888892 Msa0380240:intron 45.0%
TCACTGTGAGCTACAATGAC+AGG + chr3_1:81888919-81888938 None:intergenic 45.0%
ACGTCTGCATACAAGAGAGT+AGG + chr3_1:81889073-81889092 None:intergenic 45.0%
CAGACGTTGAACACGACTTT+AGG - chr3_1:81889086-81889105 Msa0380240:intron 45.0%
TCTTCAATTGCACCAACTGG+AGG + chr3_1:81889197-81889216 None:intergenic 45.0%
! TCCAGTTGGTGCAATTGAAG+AGG - chr3_1:81889196-81889215 Msa0380240:intron 45.0%
ACCTCTTCAATTGCACCAAC+TGG + chr3_1:81889200-81889219 None:intergenic 45.0%
CCACTAGAAGACACAGAGTT+TGG + chr3_1:81889358-81889377 None:intergenic 45.0%
CCAAACTCTGTGTCTTCTAG+TGG - chr3_1:81889355-81889374 Msa0380240:intron 45.0%
! AGACAAAAGGGACTTTGGGA+CGG + chr3_1:81889492-81889511 None:intergenic 45.0%
CCCGTCACTACAAGACAAAA+GGG + chr3_1:81889504-81889523 None:intergenic 45.0%
! CCCTTTTGTCTTGTAGTGAC+GGG - chr3_1:81889501-81889520 Msa0380240:intron 45.0%
ACCCGTCACTACAAGACAAA+AGG + chr3_1:81889505-81889524 None:intergenic 45.0%
TAACCGATTAACGACATGGC+TGG - chr3_1:81889845-81889864 Msa0380240:exon 45.0%
TGACCAGCCATGTCGTTAAT+CGG + chr3_1:81889851-81889870 None:intergenic 45.0%
!! AATATAATTAATTAATCTTA+GGG + chr3_1:81886925-81886944 None:intergenic 5.0%
!! AAATATAATTAATTAATCTT+AGG + chr3_1:81886926-81886945 None:intergenic 5.0%
GTTAAGTGTGTCCCCACATG+TGG + chr3_1:81885359-81885378 None:intergenic 50.0%
GAAAACCAGAAGAGGAACGG+AGG - chr3_1:81885453-81885472 Msa0380240:three_prime_UTR 50.0%
GAGCTGGATAAGGACAGAGA+TGG - chr3_1:81885567-81885586 Msa0380240:CDS 50.0%
CTTGGTCAGGCCAAACACAA+AGG + chr3_1:81885927-81885946 None:intergenic 50.0%
AGAAAGGGGCTAACTTGGTC+AGG + chr3_1:81885940-81885959 None:intergenic 50.0%
CCATGATAACATGGTCGGTC+CGG - chr3_1:81886133-81886152 Msa0380240:CDS 50.0%
GTCACCAGATTCTGCCTGAA+AGG + chr3_1:81886233-81886252 None:intergenic 50.0%
TTCCCACGGTTTAGACCCTT+TGG - chr3_1:81886330-81886349 Msa0380240:CDS 50.0%
TCCCACGGTTTAGACCCTTT+GGG - chr3_1:81886331-81886350 Msa0380240:CDS 50.0%
TAGTCTCATAGCGGCCCAAA+GGG + chr3_1:81886348-81886367 None:intergenic 50.0%
TTAGTCTCATAGCGGCCCAA+AGG + chr3_1:81886349-81886368 None:intergenic 50.0%
TGGGTGTGAAAAGGCAAAGG+TGG - chr3_1:81886673-81886692 Msa0380240:intron 50.0%
AAGAACGCAGCAAGTGTACC+AGG - chr3_1:81887360-81887379 Msa0380240:intron 50.0%
GACATCCATTACGCACTCCA+AGG - chr3_1:81887479-81887498 Msa0380240:intron 50.0%
ACTAATCCTCAAGTCGGCAG+CGG - chr3_1:81887539-81887558 Msa0380240:intron 50.0%
ATGCCCGGCCTGATAATTGA+TGG - chr3_1:81888226-81888245 Msa0380240:intron 50.0%
GAAGATCTTCCCCATCCATG+CGG + chr3_1:81888415-81888434 None:intergenic 50.0%
GGAAGACTCGATGTTGATCG+AGG - chr3_1:81888539-81888558 Msa0380240:intron 50.0%
GGCACTGTTGTCTCAAGCTT+TGG - chr3_1:81888810-81888829 Msa0380240:intron 50.0%
CTTGCAGGTGACACTAGATG+TGG - chr3_1:81889151-81889170 Msa0380240:intron 50.0%
ACTGGAGGTAAACCAGCAGA+TGG + chr3_1:81889182-81889201 None:intergenic 50.0%
!! TCTGCTGGTTTACCTCCAGT+TGG - chr3_1:81889182-81889201 Msa0380240:intron 50.0%
AACCAGAAGAGGAACGGAGG+AGG - chr3_1:81885456-81885475 Msa0380240:three_prime_UTR 55.0%
GGAGGAGGAGAGGTTCTTGA+TGG - chr3_1:81885477-81885496 Msa0380240:exon 55.0%
!! AGCACCGATGTCAGCAACAG+CGG + chr3_1:81885619-81885638 None:intergenic 55.0%
!! TGCTCTTGGTTTGCCTGCTC+AGG - chr3_1:81885638-81885657 Msa0380240:CDS 55.0%
!! GCTCTTGGTTTGCCTGCTCA+GGG - chr3_1:81885639-81885658 Msa0380240:CDS 55.0%
CCGGACCGACCATGTTATCA+TGG + chr3_1:81886136-81886155 None:intergenic 55.0%
TGATAACATGGTCGGTCCGG+TGG - chr3_1:81886136-81886155 Msa0380240:CDS 55.0%
GATAACATGGTCGGTCCGGT+GGG - chr3_1:81886137-81886156 Msa0380240:CDS 55.0%
GCCCAAAGGGTCTAAACCGT+GGG + chr3_1:81886335-81886354 None:intergenic 55.0%
CTAATCCTCAAGTCGGCAGC+GGG - chr3_1:81887540-81887559 Msa0380240:intron 55.0%
AACAGCTCAGTGGCAATGGC+AGG + chr3_1:81889017-81889036 None:intergenic 55.0%
GATGTGGTGTCTCCATCTGC+TGG - chr3_1:81889167-81889186 Msa0380240:intron 55.0%
CTCCTCCTCCGTTCCTCTTC+TGG + chr3_1:81885461-81885480 None:intergenic 60.0%
CAGAAGAGGAACGGAGGAGG+AGG - chr3_1:81885459-81885478 Msa0380240:three_prime_UTR 60.0%
AAGAGGAACGGAGGAGGAGG+AGG - chr3_1:81885462-81885481 Msa0380240:three_prime_UTR 60.0%
! AGCGGGCTCAAGCTCCTTCA+AGG + chr3_1:81885601-81885620 None:intergenic 60.0%
GAGCCCGCTGTTGCTGACAT+CGG - chr3_1:81885612-81885631 Msa0380240:CDS 60.0%
! GCACCGATGTCAGCAACAGC+GGG + chr3_1:81885618-81885637 None:intergenic 60.0%
!! GCTGACATCGGTGCTGCTCT+TGG - chr3_1:81885624-81885643 Msa0380240:CDS 60.0%
TCAGGAGTAGTGCCCTGAGC+AGG + chr3_1:81885654-81885673 None:intergenic 60.0%
GGCCCAAAGGGTCTAAACCG+TGG + chr3_1:81886336-81886355 None:intergenic 60.0%
CCTTGAGTCTGCAGCTGCAG+CGG - chr3_1:81886370-81886389 Msa0380240:CDS 60.0%
TGCAGCTGCAGCGGAACATC+CGG - chr3_1:81886379-81886398 Msa0380240:CDS 60.0%
GAACGGAGGAGGAGGAGGAG+AGG - chr3_1:81885467-81885486 Msa0380240:three_prime_UTR 65.0%
CCGCTGCAGCTGCAGACTCA+AGG + chr3_1:81886373-81886392 None:intergenic 65.0%
!! GATGTCCCGCTGCCGACTTG+AGG + chr3_1:81887548-81887567 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81885306 81889996 81885306 ID=Msa0380240;Name=Msa0380240
chr3_1 mRNA 81885306 81889996 81885306 ID=Msa0380240-mRNA-1;Parent=Msa0380240;Name=Msa0380240-mRNA-1;_AED=0.12;_eAED=0.12;_QI=144|1|1|1|1|1|5|184|364
chr3_1 exon 81885306 81885699 81885306 ID=Msa0380240-mRNA-1:exon:20858;Parent=Msa0380240-mRNA-1
chr3_1 exon 81886085 81886213 81886085 ID=Msa0380240-mRNA-1:exon:20857;Parent=Msa0380240-mRNA-1
chr3_1 exon 81886303 81886515 81886303 ID=Msa0380240-mRNA-1:exon:20856;Parent=Msa0380240-mRNA-1
chr3_1 exon 81886716 81887012 81886716 ID=Msa0380240-mRNA-1:exon:20855;Parent=Msa0380240-mRNA-1
chr3_1 exon 81889607 81889996 81889607 ID=Msa0380240-mRNA-1:exon:20854;Parent=Msa0380240-mRNA-1
chr3_1 five_prime_UTR 81889853 81889996 81889853 ID=Msa0380240-mRNA-1:five_prime_utr;Parent=Msa0380240-mRNA-1
chr3_1 CDS 81889607 81889852 81889607 ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1
chr3_1 CDS 81886716 81887012 81886716 ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1
chr3_1 CDS 81886303 81886515 81886303 ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1
chr3_1 CDS 81886085 81886213 81886085 ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1
chr3_1 CDS 81885490 81885699 81885490 ID=Msa0380240-mRNA-1:cds;Parent=Msa0380240-mRNA-1
chr3_1 three_prime_UTR 81885306 81885489 81885306 ID=Msa0380240-mRNA-1:three_prime_utr;Parent=Msa0380240-mRNA-1
Gene Sequence

>Msa0380240

ATGGAAAACCAGAAGAGGAACGGAGGAGGAGGAGGAGAGGTTCTTGATGGCTCCAACATTATGGAATTGGTTGGAAACGAGCAAGGATTCAACAAGTTTGTGGACCACAAATTTCATGAGCTGGATAAGGACAGAGATGGTAAACTCTCCTTGAAGGAGCTTGAGCCCGCTGTTGCTGACATCGGTGCTGCTCTTGGTTTGCCTGCTCAGGGCACTACTCCTGACTCTGATCACATCTACTATCAGGTGTTGAATGAATTCACTCATGGAAAGCAAGAAAAAGTGAGCAAGAGTGAGTTCAAAGAGGTTCTCTCAGACATTCTATTAGGCATGGCTGCTGGACTGAAGCGAGACCCAATTGTTATACTCCGCATGGATGGGGAAGATCTTCTTGAGTTTGTTAACGGTCCAAGTTATTATACAGAAATGACATCCATATTCTCTCAGATTCAAAACTCTAGTACATCACTCCGCGAACTTGTTATTGAAGCTTTTGGAAGACTCGATGTTGATCGAGGAATTCCTCCTACATCAGATTCTTGGGTTTTTAACAACATTGTGGATCCGGCACTGTTGTCTCAAGCTTTGGATAGGCCTGTTAGAGATCAAGAGACATTTTTGGAAGAATTCAAGAAAGTGGCATTGAGTGTGGTTGATTGCCTTAAAGAGAAGCCTGTCATTGTAGCTCACAGTGAAAACACTTTTGATGGAAGTGGTGTCAAGAGACTCTTATCCAACAAGTTTGAATTAGAAAAGACGTTGAACACGACTTTAGGGAATCTGCCAAAAGATCGAAACGGAAAAATATCAAAGGATTACTTGCAGGTGACACTAGATGTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGATGGATAAGGTTATTAGTGAAGCCTTTAAGACGGTGAATAATGAAGATGACAAGAAGATGATGATTAAAGAAGAAGAATTCAAGAAAATTTTAATTGAAATACTGGGGAGTATCATGTTGCAGTTAGAAGGAAGTCCCATTGCTGTTTCTTCAAATTCAGTTTTACACGAGCCTTTAAGCTCATCTTCTACACTTTTGAACCCATCTTAA

Protein sequence

>Msa0380240

MENQKRNGGGGGEVLDGSNIMELVGNEQGFNKFVDHKFHELDKDRDGKLSLKELEPAVADIGAALGLPAQGTTPDSDHIYYQVLNEFTHGKQEKVSKSEFKEVLSDILLGMAAGLKRDPIVILRMDGEDLLEFVNGPSYYTEMTSIFSQIQNSSTSLRELVIEAFGRLDVDRGIPPTSDSWVFNNIVDPALLSQALDRPVRDQETFLEEFKKVALSVVDCLKEKPVIVAHSENTFDGSGVKRLLSNKFELEKTLNTTLGNLPKDRNGKISKDYLQVTLDVVSPSAGLPPVGAIEEMDKVISEAFKTVNNEDDKKMMIKEEEFKKILIEILGSIMLQLEGSPIAVSSNSVLHEPLSSSSTLLNPS*