Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443080 | G7J7U7 | 97.790 | 362 | 8 | 0 | 1 | 362 | 1 | 362 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365090 | Msa1443080 | 0.955428 | 3.102727e-113 | -8.615850e-47 |
| Msa1367340 | Msa1443080 | 0.960043 | 4.104882e-118 | -8.615850e-47 |
| Msa0380240 | Msa1443080 | 0.868807 | 4.961325e-66 | -8.615850e-47 |
| Msa0524160 | Msa1443080 | 0.973529 | 1.392476e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443080 | MtrunA17_Chr3g0145431 | 97.790 | 362 | 8 | 0 | 1 | 362 | 1 | 362 | 0.0 | 715 |
| Msa1443080 | MtrunA17_Chr4g0038631 | 73.297 | 367 | 87 | 4 | 4 | 362 | 7 | 370 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443080 | AT4G38810.2 | 64.407 | 354 | 117 | 4 | 11 | 358 | 13 | 363 | 3.09e-161 | 456 |
| Msa1443080 | AT4G38810.1 | 58.984 | 256 | 96 | 4 | 109 | 358 | 1 | 253 | 3.31e-100 | 297 |
| Msa1443080 | AT5G28830.1 | 23.102 | 303 | 205 | 8 | 53 | 345 | 39 | 323 | 1.34e-11 | 65.5 |
Find 90 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACAGGCTTCTCTTTA+AGG | 0.119543 | tig0030289:-15047 | None:intergenic |
| TTCATTATTCACCGTCTTAA+AGG | 0.134887 | tig0030289:-15769 | None:intergenic |
| CTCCTCCTCCGTTCCTCTTC+TGG | 0.176059 | tig0030289:-11603 | None:intergenic |
| TGCTCTTGGTTTGCCTGCTC+AGG | 0.235368 | tig0030289:+11777 | Msa1443080:CDS |
| CAGACGTTGAACACGACTTT+AGG | 0.248256 | tig0030289:+15230 | Msa1443080:intron |
| TCTTGATGGCTCCAACATTA+TGG | 0.250150 | tig0030289:+11630 | Msa1443080:CDS |
| ATAGGAGTATGACTTTCTTT+TGG | 0.264622 | tig0030289:+11475 | Msa1443080:five_prime_UTR |
| TTCCTCCTACATCAGATTCT+TGG | 0.291211 | tig0030289:+14708 | Msa1443080:CDS |
| TGATATAATTGACATTTAAT+AGG | 0.294647 | tig0030289:+11457 | Msa1443080:five_prime_UTR |
| TCAACTCAACAATATTATTA+TGG | 0.334349 | tig0030289:-11525 | None:intergenic |
| GGCACTGTTGTCTCAAGCTT+TGG | 0.358693 | tig0030289:+14954 | Msa1443080:CDS |
| GAACTTGTTATTGAAGCTTT+TGG | 0.363865 | tig0030289:+14662 | Msa1443080:CDS |
| TGACCAGCCATGTCGTTAAT+CGG | 0.385714 | tig0030289:-15992 | None:intergenic |
| ACCTCTTCAATTGCACCAAC+TGG | 0.390172 | tig0030289:-15341 | None:intergenic |
| GTTCTCTCAGACATTCTATT+AGG | 0.394979 | tig0030289:+14494 | Msa1443080:CDS |
| AATATCAAAGGATTACTTGC+AGG | 0.400730 | tig0030289:+15280 | Msa1443080:CDS |
| TCCTCCTACATCAGATTCTT+GGG | 0.401019 | tig0030289:+14709 | Msa1443080:CDS |
| CTGATTCTTGTTCTTTCTTG+TGG | 0.405119 | tig0030289:-11566 | None:intergenic |
| AATGTCTCTTGATCTCTAAC+AGG | 0.406167 | tig0030289:-14982 | None:intergenic |
| CTCTGATCACATCTACTATC+AGG | 0.408189 | tig0030289:+11813 | Msa1443080:CDS |
| GAACAAGAATCAGCAGTAGA+TGG | 0.411220 | tig0030289:+11576 | Msa1443080:exon |
| AGACGTTGAACACGACTTTA+GGG | 0.414927 | tig0030289:+15231 | Msa1443080:intron |
| GCTCTTGGTTTGCCTGCTCA+GGG | 0.416449 | tig0030289:+11778 | Msa1443080:CDS |
| AGTGTAGAAGATGAGCTTAA+AGG | 0.417154 | tig0030289:-15918 | None:intergenic |
| TGGCTCCAACATTATGGAAT+TGG | 0.417894 | tig0030289:+11636 | Msa1443080:CDS |
| GATCTTCTTGAGTTTGTTAA+CGG | 0.419045 | tig0030289:+14572 | Msa1443080:CDS |
| GCTGACATCGGTGCTGCTCT+TGG | 0.421869 | tig0030289:+11763 | Msa1443080:CDS |
| AGTATCATGTTGCAGTTAGA+AGG | 0.429901 | tig0030289:+15855 | Msa1443080:CDS |
| CAACAAGTTTGAATTAGAAA+AGG | 0.439922 | tig0030289:+15122 | Msa1443080:CDS |
| TATCCAGCTCATGAAATTTG+TGG | 0.442680 | tig0030289:-11693 | None:intergenic |
| GAACAAGAATAATATTAAGA+TGG | 0.443655 | tig0030289:-15948 | None:intergenic |
| TCCAACCAATTCCATAATGT+TGG | 0.447482 | tig0030289:-11641 | None:intergenic |
| TCCATGCAGAGTATAACAAT+TGG | 0.453037 | tig0030289:-14542 | None:intergenic |
| CTTGTGGTTTATTTGACTGA+GGG | 0.459556 | tig0030289:-11550 | None:intergenic |
| TTTGGAAGAATTCAAGAAAG+TGG | 0.460032 | tig0030289:+15005 | Msa1443080:CDS |
| GTCATTTCTGTATAATAACT+TGG | 0.474803 | tig0030289:-14596 | None:intergenic |
| CAAATTTCATGAGCTGGATA+AGG | 0.483471 | tig0030289:+11696 | Msa1443080:CDS |
| AGCGGGCTCAAGCTCCTTCA+AGG | 0.483560 | tig0030289:-11737 | None:intergenic |
| GGAGGAGGAGAGGTTCTTGA+TGG | 0.488101 | tig0030289:+11616 | Msa1443080:CDS |
| TAGTAGATGTGATCAGAGTC+AGG | 0.489937 | tig0030289:-11808 | None:intergenic |
| GCAAGGATTCAACAAGTTTG+TGG | 0.490981 | tig0030289:+11669 | Msa1443080:CDS |
| TTGTTATACTCTGCATGGAT+GGG | 0.494421 | tig0030289:+14546 | Msa1443080:CDS |
| GGACCACAAATTTCATGAGC+TGG | 0.499403 | tig0030289:+11690 | Msa1443080:CDS |
| TGTTGTCTCAAGCTTTGGAT+AGG | 0.500092 | tig0030289:+14959 | Msa1443080:CDS |
| CGAGAAATTAAATATGATCC+AGG | 0.503924 | tig0030289:-16061 | None:intergenic |
| TCAGGAGTAGTGCCCTGAGC+AGG | 0.508149 | tig0030289:-11790 | None:intergenic |
| ATTCTATTAGGCATGGCTGC+TGG | 0.509238 | tig0030289:+14506 | Msa1443080:CDS |
| GCACCGATGTCAGCAACAGC+GGG | 0.511448 | tig0030289:-11754 | None:intergenic |
| TACCTATGCAAATTGTTACC+TGG | 0.513205 | tig0030289:+16043 | Msa1443080:three_prime_UTR |
| AACCAGAAGAGGAACGGAGG+AGG | 0.517853 | tig0030289:+11601 | Msa1443080:CDS |
| AGATGGTAAGCTCTCCTTGA+AGG | 0.518287 | tig0030289:+11723 | Msa1443080:CDS |
| TCACTGTGAGCTACAATGAC+AGG | 0.521245 | tig0030289:-15060 | None:intergenic |
| ATTGTTATACTCTGCATGGA+TGG | 0.521997 | tig0030289:+14545 | Msa1443080:CDS |
| AACAAGAATAATATTAAGAT+GGG | 0.524551 | tig0030289:-15947 | None:intergenic |
| TCTTGTGGTTTATTTGACTG+AGG | 0.524629 | tig0030289:-11551 | None:intergenic |
| CCATGCAGAGTATAACAATT+GGG | 0.524748 | tig0030289:-14541 | None:intergenic |
| TCTGCTGGTTTACCTCCAGT+TGG | 0.524964 | tig0030289:+15326 | Msa1443080:CDS |
| CTCAGACATTCTATTAGGCA+TGG | 0.528189 | tig0030289:+14499 | Msa1443080:CDS |
| GATGTGGTGTCTCCATCTGC+TGG | 0.529207 | tig0030289:+15311 | Msa1443080:CDS |
| GAGCCCGCTGTTGCTGACAT+CGG | 0.531602 | tig0030289:+11751 | Msa1443080:CDS |
| CCCAATTGTTATACTCTGCA+TGG | 0.539018 | tig0030289:+14541 | Msa1443080:CDS |
| AAGCTTCAATAACAAGTTCG+CGG | 0.551585 | tig0030289:-14658 | None:intergenic |
| GAATTTGAAGAAACAGCAAT+GGG | 0.554960 | tig0030289:-15882 | None:intergenic |
| GTGTTGAATGAATTCACTCA+TGG | 0.557877 | tig0030289:+14434 | Msa1443080:CDS |
| TCCAACATTATGGAATTGGT+TGG | 0.565142 | tig0030289:+11640 | Msa1443080:CDS |
| TGTTATACTCTGCATGGATG+GGG | 0.565150 | tig0030289:+14547 | Msa1443080:CDS |
| TAACCGATTAACGACATGGC+TGG | 0.572052 | tig0030289:+15989 | Msa1443080:three_prime_UTR |
| TGAATTTGAAGAAACAGCAA+TGG | 0.575925 | tig0030289:-15883 | None:intergenic |
| GAAGAGGAACGGAGGAGGAG+AGG | 0.578320 | tig0030289:+11606 | Msa1443080:CDS |
| AGCACCGATGTCAGCAACAG+CGG | 0.580542 | tig0030289:-11755 | None:intergenic |
| ATTACCCAAGAATCTGATGT+AGG | 0.586136 | tig0030289:-14713 | None:intergenic |
| GAATTGGTTGGAAACGAGCA+AGG | 0.589020 | tig0030289:+11652 | Msa1443080:CDS |
| TATTAGTGAAGCCTTTAAGA+CGG | 0.589119 | tig0030289:+15758 | Msa1443080:CDS |
| AAAGCTTGAGACAACAGTGC+CGG | 0.602253 | tig0030289:-14952 | None:intergenic |
| GGAAGACTCGATGTTGATCG+AGG | 0.609171 | tig0030289:+14683 | Msa1443080:CDS |
| TCCAGTTGGTGCAATTGAAG+AGG | 0.610698 | tig0030289:+15340 | Msa1443080:CDS |
| ACTGGAGGTAAACCAGCAGA+TGG | 0.614242 | tig0030289:-15323 | None:intergenic |
| ACCCAAGAATCTGATGTAGG+AGG | 0.614585 | tig0030289:-14710 | None:intergenic |
| AGTAGATGGAAAACCAGAAG+AGG | 0.616094 | tig0030289:+11590 | Msa1443080:exon |
| GTTAAGTGTGTCCCCACATG+TGG | 0.623821 | tig0030289:-11501 | None:intergenic |
| TGCATAACCGATTAACGACA+TGG | 0.635170 | tig0030289:+15985 | Msa1443080:three_prime_UTR |
| CAAGAAAGTGGCATTGAGTG+TGG | 0.640256 | tig0030289:+15017 | Msa1443080:CDS |
| ATGGAAAACCAGAAGAGGAA+CGG | 0.642985 | tig0030289:+11595 | Msa1443080:CDS |
| TCTTCAATTGCACCAACTGG+AGG | 0.650559 | tig0030289:-15338 | None:intergenic |
| GAGCAAGAGTGAGTTCAAAG+AGG | 0.651775 | tig0030289:+14472 | Msa1443080:CDS |
| ATCCAGGTAACAATTTGCAT+AGG | 0.662558 | tig0030289:-16045 | None:intergenic |
| AATCTGCCAAAAGATCGAAA+CGG | 0.663483 | tig0030289:+15254 | Msa1443080:CDS |
| GAAAACCAGAAGAGGAACGG+AGG | 0.663724 | tig0030289:+11598 | Msa1443080:CDS |
| GAGCTGGATAAGGACAGAGA+TGG | 0.674340 | tig0030289:+11706 | Msa1443080:CDS |
| CTTGCAGGTGACACTAGATG+TGG | 0.729256 | tig0030289:+15295 | Msa1443080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTATCAATGTAT+TGG | + | tig0030289:12012-12031 | Msa1443080:intron | 10.0% |
| !! | CAAAAATATAAATAATCTTA+AGG | - | tig0030289:14246-14265 | None:intergenic | 10.0% |
| !!! | AAAATTTTAATTGAAATACT+GGG | + | tig0030289:15831-15850 | Msa1443080:CDS | 10.0% |
| !! | ATAAAAATAAATATTGTACT+TGG | - | tig0030289:16022-16041 | None:intergenic | 10.0% |
| !! | TGATATAATTGACATTTAAT+AGG | + | tig0030289:11457-11476 | Msa1443080:five_prime_UTR | 15.0% |
| !! | ATTACATAATAAAAAGAGAA+AGG | - | tig0030289:11846-11865 | None:intergenic | 15.0% |
| !! | AACATATATATTACCAATAT+GGG | - | tig0030289:12586-12605 | None:intergenic | 15.0% |
| !! | AAACATATATATTACCAATA+TGG | - | tig0030289:12587-12606 | None:intergenic | 15.0% |
| !! | CAGAAATATAATTAATCTTA+GGG | - | tig0030289:13099-13118 | None:intergenic | 15.0% |
| !! | ACAGAAATATAATTAATCTT+AGG | - | tig0030289:13100-13119 | None:intergenic | 15.0% |
| !!! | AATTTCTAAAAATTAAGACT+GGG | + | tig0030289:13176-13195 | Msa1443080:intron | 15.0% |
| !! | TTTATTATTCAACTCAAAAT+GGG | - | tig0030289:13543-13562 | None:intergenic | 15.0% |
| !! | ATTTATTATTCAACTCAAAA+TGG | - | tig0030289:13544-13563 | None:intergenic | 15.0% |
| !!! | ACTTTGATATATTTTATTTG+TGG | + | tig0030289:15186-15205 | Msa1443080:intron | 15.0% |
| !!! | GAAAATTTTAATTGAAATAC+TGG | + | tig0030289:15830-15849 | Msa1443080:CDS | 15.0% |
| !!! | AAATTTTAATTGAAATACTG+GGG | + | tig0030289:15832-15851 | Msa1443080:CDS | 15.0% |
| !! | AACAAGAATAATATTAAGAT+GGG | - | tig0030289:15950-15969 | None:intergenic | 15.0% |
| !! | TCAACTCAACAATATTATTA+TGG | - | tig0030289:11528-11547 | None:intergenic | 20.0% |
| !! | GTTATCATGGATAATTAATT+AGG | - | tig0030289:12286-12305 | None:intergenic | 20.0% |
| !! | ATTAATTATCCATGATAACA+TGG | + | tig0030289:12287-12306 | Msa1443080:intron | 20.0% |
| !! | GTCAAAAATCATAATTACAA+TGG | - | tig0030289:12451-12470 | None:intergenic | 20.0% |
| !! | GTGATATAAACTTATAAAGT+TGG | + | tig0030289:12724-12743 | Msa1443080:intron | 20.0% |
| !!! | ATTTTCCGTATAAATGATAT+AGG | + | tig0030289:13055-13074 | Msa1443080:intron | 20.0% |
| !! | GATAACCTATATCATTTATA+CGG | - | tig0030289:13063-13082 | None:intergenic | 20.0% |
| !!! | CAATTTCTAAAAATTAAGAC+TGG | + | tig0030289:13175-13194 | Msa1443080:intron | 20.0% |
| !! | TCTGAATATGTATGTTAAAA+TGG | + | tig0030289:13268-13287 | Msa1443080:intron | 20.0% |
| !! | TTATTATTCAACTCAAAATG+GGG | - | tig0030289:13542-13561 | None:intergenic | 20.0% |
| !! | TTATTAGAGTGATAAAAAGT+TGG | + | tig0030289:13817-13836 | Msa1443080:intron | 20.0% |
| !! | TAACCAAATATGGTAAATAT+GGG | + | tig0030289:13977-13996 | Msa1443080:intron | 20.0% |
| !! | ATGATTATATATCAATGATG+TGG | + | tig0030289:14053-14072 | Msa1443080:intron | 20.0% |
| !! | ATCTTAAGGAAAACAATATA+CGG | - | tig0030289:14232-14251 | None:intergenic | 20.0% |
| !! | TATTGATCTTGAAAATACAA+TGG | - | tig0030289:14290-14309 | None:intergenic | 20.0% |
| !! | GAACAAGAATAAAAATTTGA+TGG | + | tig0030289:14398-14417 | Msa1443080:intron | 20.0% |
| !! | GAACAAGAATAATATTAAGA+TGG | - | tig0030289:15951-15970 | None:intergenic | 20.0% |
| ! | AGCTTAAAGAAAAAACACAA+AGG | - | tig0030289:12066-12085 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTCTTTAAGCTT+TGG | + | tig0030289:12067-12086 | Msa1443080:intron | 25.0% |
| !!! | TTTTTCTTTAAGCTTTGGTT+TGG | + | tig0030289:12072-12091 | Msa1443080:intron | 25.0% |
| ! | CATGGATAATTAATTAGGAT+AGG | - | tig0030289:12281-12300 | None:intergenic | 25.0% |
| ! | ATAAAAAGCAAAATTGAGCA+GGG | - | tig0030289:12353-12372 | None:intergenic | 25.0% |
| ! | AATAAAAAGCAAAATTGAGC+AGG | - | tig0030289:12354-12373 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTTCTTCTTCT+AGG | + | tig0030289:12425-12444 | Msa1443080:intron | 25.0% |
| ! | AGTATATGCTAAAACATTGA+CGG | + | tig0030289:12620-12639 | Msa1443080:intron | 25.0% |
| !! | CTTCAAGTTCAAAGATTAAA+CGG | - | tig0030289:12652-12671 | None:intergenic | 25.0% |
| ! | TTAATGTAATGATGAACTCA+AGG | + | tig0030289:12760-12779 | Msa1443080:intron | 25.0% |
| ! | TAATGTAATGATGAACTCAA+GGG | + | tig0030289:12761-12780 | Msa1443080:intron | 25.0% |
| !! | GAAAATCTGATTTGATCAAA+TGG | - | tig0030289:13041-13060 | None:intergenic | 25.0% |
| ! | ATCTTAGGGAAAACAATATA+GGG | - | tig0030289:13085-13104 | None:intergenic | 25.0% |
| ! | AATCTTAGGGAAAACAATAT+AGG | - | tig0030289:13086-13105 | None:intergenic | 25.0% |
| ! | TACTGAATTTGAAAATGCAA+TGG | - | tig0030289:13147-13166 | None:intergenic | 25.0% |
| ! | TATGTATGTTAAAATGGATG+TGG | + | tig0030289:13274-13293 | Msa1443080:intron | 25.0% |
| ! | TATCTAGGCAAAACATTATA+GGG | - | tig0030289:13462-13481 | None:intergenic | 25.0% |
| ! | ATATCTAGGCAAAACATTAT+AGG | - | tig0030289:13463-13482 | None:intergenic | 25.0% |
| ! | TACTTTATGCTACAATATCT+AGG | - | tig0030289:13477-13496 | None:intergenic | 25.0% |
| ! | AGGCAAAATTGATCTTTAAA+TGG | + | tig0030289:13922-13941 | Msa1443080:intron | 25.0% |
| ! | ATCTTTAAATGGAATCCTTT+GGG | + | tig0030289:13933-13952 | Msa1443080:intron | 25.0% |
| ! | CATATTTACCATATTTGGTT+AGG | - | tig0030289:13978-13997 | None:intergenic | 25.0% |
| ! | CTAACCAAATATGGTAAATA+TGG | + | tig0030289:13976-13995 | Msa1443080:intron | 25.0% |
| ! | ATAAAAGATACCTTAGAAAC+AGG | + | tig0030289:14009-14028 | Msa1443080:intron | 25.0% |
| ! | TAAAAGATACCTTAGAAACA+GGG | + | tig0030289:14010-14029 | Msa1443080:intron | 25.0% |
| !!! | TCATGTGCAGAAATTTTAAT+AGG | - | tig0030289:14348-14367 | None:intergenic | 25.0% |
| ! | GTCATTTCTGTATAATAACT+TGG | - | tig0030289:14599-14618 | None:intergenic | 25.0% |
| !! | TTAGGTTTTTAACAACATTG+TGG | + | tig0030289:14927-14946 | Msa1443080:intron | 25.0% |
| !! | CTTTTCTAATTCAAACTTGT+TGG | - | tig0030289:15124-15143 | None:intergenic | 25.0% |
| ! | CAACAAGTTTGAATTAGAAA+AGG | + | tig0030289:15122-15141 | Msa1443080:CDS | 25.0% |
| !! | ATATACTGACTAATATGCAT+TGG | - | tig0030289:15379-15398 | None:intergenic | 25.0% |
| ! | AATTTAATCAGACATTGTGA+TGG | - | tig0030289:15474-15493 | None:intergenic | 25.0% |
| !!! | TTTGATTTTACAGATGGATA+AGG | + | tig0030289:15734-15753 | Msa1443080:intron | 25.0% |
| !! | ATAGGAGTATGACTTTCTTT+TGG | + | tig0030289:11475-11494 | Msa1443080:five_prime_UTR | 30.0% |
| !! | TAGGAGTATGACTTTCTTTT+GGG | + | tig0030289:11476-11495 | Msa1443080:five_prime_UTR | 30.0% |
| ACCACATACACAAAAAGAAA+GGG | - | tig0030289:12113-12132 | None:intergenic | 30.0% | |
| AACCACATACACAAAAAGAA+AGG | - | tig0030289:12114-12133 | None:intergenic | 30.0% | |
| ATGTGATACTTTATAGAAGC+TGG | + | tig0030289:12243-12262 | Msa1443080:intron | 30.0% | |
| ATTATCCATGATAACATGGT+CGG | + | tig0030289:12291-12310 | Msa1443080:intron | 30.0% | |
| AGACACACTAATGAAAAAAC+CGG | - | tig0030289:12563-12582 | None:intergenic | 30.0% | |
| TCAGTTAGCACTAGTAATTT+GGG | - | tig0030289:12793-12812 | None:intergenic | 30.0% | |
| ATCAGTTAGCACTAGTAATT+TGG | - | tig0030289:12794-12813 | None:intergenic | 30.0% | |
| ! | ATATCTGAAGTTAGTACTTG+TGG | + | tig0030289:12812-12831 | Msa1443080:intron | 30.0% |
| ! | TATCTGAAGTTAGTACTTGT+GGG | + | tig0030289:12813-12832 | Msa1443080:intron | 30.0% |
| GTGCTCAGATAATTGATAAA+TGG | + | tig0030289:12966-12985 | Msa1443080:intron | 30.0% | |
| TTTCCATGAGATATCTATCT+AGG | + | tig0030289:13310-13329 | Msa1443080:intron | 30.0% | |
| TTCCATGAGATATCTATCTA+GGG | + | tig0030289:13311-13330 | Msa1443080:intron | 30.0% | |
| ATCTAGGCAAAACATTATAG+GGG | - | tig0030289:13461-13480 | None:intergenic | 30.0% | |
| TTTAAGCCGTAATTATACCT+TGG | - | tig0030289:13643-13662 | None:intergenic | 30.0% | |
| TGTCACTCATGTGAAAAAAT+CGG | - | tig0030289:13714-13733 | None:intergenic | 30.0% | |
| GATCTTTAAATGGAATCCTT+TGG | + | tig0030289:13932-13951 | Msa1443080:intron | 30.0% | |
| GTTCCCATATTTACCATATT+TGG | - | tig0030289:13983-14002 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTCCCTGTTTCTA+AGG | - | tig0030289:14022-14041 | None:intergenic | 30.0% |
| AACAGGGAGAAAAAAAATAG+AGG | + | tig0030289:14026-14045 | Msa1443080:intron | 30.0% | |
| TTCATGATGACAGTAAACTT+AGG | - | tig0030289:14099-14118 | None:intergenic | 30.0% | |
| TACAGATTGTATGATTGCAT+AGG | - | tig0030289:14122-14141 | None:intergenic | 30.0% | |
| !! | GGAGAGCTCATATTTTTATT+CGG | - | tig0030289:14211-14230 | None:intergenic | 30.0% |
| !! | ATTTGATGGACTTGTTGTAT+AGG | + | tig0030289:14412-14431 | Msa1443080:intron | 30.0% |
| !! | GATCTTCTTGAGTTTGTTAA+CGG | + | tig0030289:14572-14591 | Msa1443080:CDS | 30.0% |
| !! | GTTTTGAATCTGAGAGAATA+TGG | - | tig0030289:14624-14643 | None:intergenic | 30.0% |
| !!! | GAACTTGTTATTGAAGCTTT+TGG | + | tig0030289:14662-14681 | Msa1443080:CDS | 30.0% |
| ! | TTTTAACAACATTGTGGATC+CGG | + | tig0030289:14933-14952 | Msa1443080:CDS | 30.0% |
| ! | TAGAGATCAAGAGACATTTT+TGG | + | tig0030289:14987-15006 | Msa1443080:CDS | 30.0% |
| TTTGGAAGAATTCAAGAAAG+TGG | + | tig0030289:15005-15024 | Msa1443080:CDS | 30.0% | |
| ! | ATTTTTCCGTTTCGATCTTT+TGG | - | tig0030289:15263-15282 | None:intergenic | 30.0% |
| TCGAAACGGAAAAATATCAA+AGG | + | tig0030289:15268-15287 | Msa1443080:CDS | 30.0% | |
| AATATCAAAGGATTACTTGC+AGG | + | tig0030289:15280-15299 | Msa1443080:CDS | 30.0% | |
| ! | ATATCAATCTGTCTCCATTT+TGG | + | tig0030289:15431-15450 | Msa1443080:intron | 30.0% |
| TTTCAGTCGCAATATTTGTT+GGG | - | tig0030289:15543-15562 | None:intergenic | 30.0% | |
| ATTTCAGTCGCAATATTTGT+TGG | - | tig0030289:15544-15563 | None:intergenic | 30.0% | |
| !! | GATGTGTTTGATTTTACAGA+TGG | + | tig0030289:15728-15747 | Msa1443080:intron | 30.0% |
| ! | TATTAGTGAAGCCTTTAAGA+CGG | + | tig0030289:15758-15777 | Msa1443080:CDS | 30.0% |
| TTCATTATTCACCGTCTTAA+AGG | - | tig0030289:15772-15791 | None:intergenic | 30.0% | |
| GAATTTGAAGAAACAGCAAT+GGG | - | tig0030289:15885-15904 | None:intergenic | 30.0% | |
| TGAATTTGAAGAAACAGCAA+TGG | - | tig0030289:15886-15905 | None:intergenic | 30.0% | |
| CGAGAAATTAAATATGATCC+AGG | - | tig0030289:16064-16083 | None:intergenic | 30.0% | |
| CTTGTGGTTTATTTGACTGA+GGG | - | tig0030289:11553-11572 | None:intergenic | 35.0% | |
| TCTTGTGGTTTATTTGACTG+AGG | - | tig0030289:11554-11573 | None:intergenic | 35.0% | |
| CTGATTCTTGTTCTTTCTTG+TGG | - | tig0030289:11569-11588 | None:intergenic | 35.0% | |
| TCCAACATTATGGAATTGGT+TGG | + | tig0030289:11640-11659 | Msa1443080:CDS | 35.0% | |
| TCCAACCAATTCCATAATGT+TGG | - | tig0030289:11644-11663 | None:intergenic | 35.0% | |
| TATCCAGCTCATGAAATTTG+TGG | - | tig0030289:11696-11715 | None:intergenic | 35.0% | |
| CAAATTTCATGAGCTGGATA+AGG | + | tig0030289:11696-11715 | Msa1443080:CDS | 35.0% | |
| !! | GTTGCTCTTCACTTTTGTTT+TGG | + | tig0030289:11914-11933 | Msa1443080:intron | 35.0% |
| CCACATACACAAAAAGAAAG+GGG | - | tig0030289:12112-12131 | None:intergenic | 35.0% | |
| TTGAAGACGAATTCTGAACT+TGG | + | tig0030289:12176-12195 | Msa1443080:intron | 35.0% | |
| AATTAGGATAGGACACTTCT+GGG | - | tig0030289:12270-12289 | None:intergenic | 35.0% | |
| TAATTAGGATAGGACACTTC+TGG | - | tig0030289:12271-12290 | None:intergenic | 35.0% | |
| AAAGGAGATTGGCAGAAAAA+TGG | - | tig0030289:12378-12397 | None:intergenic | 35.0% | |
| TAATGATGAACTCAAGGGAA+GGG | + | tig0030289:12766-12785 | Msa1443080:intron | 35.0% | |
| TTATGCGTCTTTACCATGTT+TGG | - | tig0030289:12888-12907 | None:intergenic | 35.0% | |
| ACATGGTAAAGACGCATAAA+AGG | + | tig0030289:12889-12908 | Msa1443080:intron | 35.0% | |
| ! | TTTTTGTCTTTCTGTGGCTA+AGG | - | tig0030289:12917-12936 | None:intergenic | 35.0% |
| !!! | CCTCTATTTTTGTCTTTCTG+TGG | - | tig0030289:12923-12942 | None:intergenic | 35.0% |
| CCACAGAAAGACAAAAATAG+AGG | + | tig0030289:12920-12939 | Msa1443080:intron | 35.0% | |
| TGCAGATTGTATGATTCCAT+AGG | - | tig0030289:13017-13036 | None:intergenic | 35.0% | |
| TCCATGAGATATCTATCTAG+GGG | + | tig0030289:13312-13331 | Msa1443080:intron | 35.0% | |
| TAGACAAGTGTCTGTTATGA+AGG | + | tig0030289:13406-13425 | Msa1443080:intron | 35.0% | |
| AGTCTCATAGAGGATTCAAA+TGG | - | tig0030289:13666-13685 | None:intergenic | 35.0% | |
| TATGAGACTAATCCTCAAGT+CGG | + | tig0030289:13677-13696 | Msa1443080:intron | 35.0% | |
| TAAGTGGTATGAGTCATCAA+TGG | - | tig0030289:13772-13791 | None:intergenic | 35.0% | |
| ! | TACCACTTAGTCTTTGAACT+TGG | + | tig0030289:13783-13802 | Msa1443080:intron | 35.0% |
| ACACATTTGCTTTATCCCAA+AGG | - | tig0030289:13951-13970 | None:intergenic | 35.0% | |
| GTGTCTTACCTAACCAAATA+TGG | + | tig0030289:13967-13986 | Msa1443080:intron | 35.0% | |
| GTGGTCAGATATTTGATGAA+TGG | + | tig0030289:14072-14091 | Msa1443080:intron | 35.0% | |
| !!! | GTTGTCTAGTTTTGATCGAA+TGG | - | tig0030289:14153-14172 | None:intergenic | 35.0% |
| GGACACGCATAAATTATTGA+AGG | - | tig0030289:14327-14346 | None:intergenic | 35.0% | |
| TTCCAGTTCCATCAATTATC+AGG | - | tig0030289:14381-14400 | None:intergenic | 35.0% | |
| GTGTTGAATGAATTCACTCA+TGG | + | tig0030289:14434-14453 | Msa1443080:CDS | 35.0% | |
| GTTCTCTCAGACATTCTATT+AGG | + | tig0030289:14494-14513 | Msa1443080:CDS | 35.0% | |
| CCATGCAGAGTATAACAATT+GGG | - | tig0030289:14544-14563 | None:intergenic | 35.0% | |
| TCCATGCAGAGTATAACAAT+TGG | - | tig0030289:14545-14564 | None:intergenic | 35.0% | |
| ATTGTTATACTCTGCATGGA+TGG | + | tig0030289:14545-14564 | Msa1443080:CDS | 35.0% | |
| TTGTTATACTCTGCATGGAT+GGG | + | tig0030289:14546-14565 | Msa1443080:CDS | 35.0% | |
| AAGCTTCAATAACAAGTTCG+CGG | - | tig0030289:14661-14680 | None:intergenic | 35.0% | |
| ATTACCCAAGAATCTGATGT+AGG | - | tig0030289:14716-14735 | None:intergenic | 35.0% | |
| ACACAACATGTTTCAATGCA+AGG | - | tig0030289:14767-14786 | None:intergenic | 35.0% | |
| AATGTCTCTTGATCTCTAAC+AGG | - | tig0030289:14985-15004 | None:intergenic | 35.0% | |
| ! | CACAGTGAAAACACTTTTGA+TGG | + | tig0030289:15075-15094 | Msa1443080:CDS | 35.0% |
| ! | GAAAACACTTTTGATGGAAG+TGG | + | tig0030289:15081-15100 | Msa1443080:CDS | 35.0% |
| AAAGTGAATTAACAGCTCAG+TGG | - | tig0030289:15171-15190 | None:intergenic | 35.0% | |
| AATCTGCCAAAAGATCGAAA+CGG | + | tig0030289:15254-15273 | Msa1443080:CDS | 35.0% | |
| TCCATATATGATGTTTGCGA+CGG | + | tig0030289:15402-15421 | Msa1443080:intron | 35.0% | |
| CCTTTGAATCTGTTCCAAAA+TGG | - | tig0030289:15448-15467 | None:intergenic | 35.0% | |
| !!! | CCATTTTGGAACAGATTCAA+AGG | + | tig0030289:15445-15464 | Msa1443080:intron | 35.0% |
| !! | TCTCGTCACAACTCATTTTT+GGG | - | tig0030289:15586-15605 | None:intergenic | 35.0% |
| ! | ATCTCGTCACAACTCATTTT+TGG | - | tig0030289:15587-15606 | None:intergenic | 35.0% |
| TACAAGACAAAAGGGACTTT+GGG | - | tig0030289:15640-15659 | None:intergenic | 35.0% | |
| AGTATCATGTTGCAGTTAGA+AGG | + | tig0030289:15855-15874 | Msa1443080:CDS | 35.0% | |
| AGTGTAGAAGATGAGCTTAA+AGG | - | tig0030289:15921-15940 | None:intergenic | 35.0% | |
| TACCTATGCAAATTGTTACC+TGG | + | tig0030289:16043-16062 | Msa1443080:three_prime_UTR | 35.0% | |
| ATCCAGGTAACAATTTGCAT+AGG | - | tig0030289:16048-16067 | None:intergenic | 35.0% | |
| !! | TTTCTTTTGGGAACCACATG+TGG | + | tig0030289:11488-11507 | Msa1443080:five_prime_UTR | 40.0% |
| !! | TTCTTTTGGGAACCACATGT+GGG | + | tig0030289:11489-11508 | Msa1443080:five_prime_UTR | 40.0% |
| GAACAAGAATCAGCAGTAGA+TGG | + | tig0030289:11576-11595 | Msa1443080:exon | 40.0% | |
| AGTAGATGGAAAACCAGAAG+AGG | + | tig0030289:11590-11609 | Msa1443080:exon | 40.0% | |
| ATGGAAAACCAGAAGAGGAA+CGG | + | tig0030289:11595-11614 | Msa1443080:CDS | 40.0% | |
| ! | TCTTGATGGCTCCAACATTA+TGG | + | tig0030289:11630-11649 | Msa1443080:CDS | 40.0% |
| TGGCTCCAACATTATGGAAT+TGG | + | tig0030289:11636-11655 | Msa1443080:CDS | 40.0% | |
| GCAAGGATTCAACAAGTTTG+TGG | + | tig0030289:11669-11688 | Msa1443080:CDS | 40.0% | |
| TAGTAGATGTGATCAGAGTC+AGG | - | tig0030289:11811-11830 | None:intergenic | 40.0% | |
| CTCTGATCACATCTACTATC+AGG | + | tig0030289:11813-11832 | Msa1443080:CDS | 40.0% | |
| CAAAAAGAAAGGGGCTAACT+TGG | - | tig0030289:12103-12122 | None:intergenic | 40.0% | |
| ! | CCCCTTTCTTTTTGTGTATG+TGG | + | tig0030289:12109-12128 | Msa1443080:intron | 40.0% |
| ATTAGGATAGGACACTTCTG+GGG | - | tig0030289:12269-12288 | None:intergenic | 40.0% | |
| ! | ACCAAAAAGCATATTCCCAC+CGG | - | tig0030289:12318-12337 | None:intergenic | 40.0% |
| ! | TTTTCTGCCAATCTCCTTTC+AGG | + | tig0030289:12379-12398 | Msa1443080:intron | 40.0% |
| ! | TACCTTGGAGTGTTTAGTTG+AGG | - | tig0030289:12473-12492 | None:intergenic | 40.0% |
| !! | CTCAAGGATTAGTCTCATAG+CGG | - | tig0030289:12520-12539 | None:intergenic | 40.0% |
| CATTAGTGTGTCTCCCATAT+TGG | + | tig0030289:12570-12589 | Msa1443080:intron | 40.0% | |
| GTAATGATGAACTCAAGGGA+AGG | + | tig0030289:12765-12784 | Msa1443080:intron | 40.0% | |
| TAGTACTTGTGGGTGTGAAA+AGG | + | tig0030289:12823-12842 | Msa1443080:intron | 40.0% | |
| AGGCAAAGGTGGTCTTTAAA+TGG | + | tig0030289:12843-12862 | Msa1443080:intron | 40.0% | |
| TTACCATGTTTGGTAAGGCA+AGG | - | tig0030289:12878-12897 | None:intergenic | 40.0% | |
| CGTCTTTACCATGTTTGGTA+AGG | - | tig0030289:12883-12902 | None:intergenic | 40.0% | |
| TTCATGATGACAGGAAACTG+GGG | - | tig0030289:12994-13013 | None:intergenic | 40.0% | |
| GTTCATGATGACAGGAAACT+GGG | - | tig0030289:12995-13014 | None:intergenic | 40.0% | |
| TTCCTGTCATCATGAACCTA+TGG | + | tig0030289:12998-13017 | Msa1443080:intron | 40.0% | |
| TTCCATAGGTTCATGATGAC+AGG | - | tig0030289:13003-13022 | None:intergenic | 40.0% | |
| ATTAAGACTGGGAAGACGTT+TGG | + | tig0030289:13187-13206 | Msa1443080:intron | 40.0% | |
| TCCCCTAGATAGATATCTCA+TGG | - | tig0030289:13316-13335 | None:intergenic | 40.0% | |
| ! | GGGCATTTGAATGAGCTTTT+TGG | - | tig0030289:13441-13460 | None:intergenic | 40.0% |
| !!! | ATGGGGAAACTTATTTTGCC+TGG | - | tig0030289:13525-13544 | None:intergenic | 40.0% |
| TTATACCTTGGAGTGCGTAA+TGG | - | tig0030289:13631-13650 | None:intergenic | 40.0% | |
| CGCACTCCAAGGTATAATTA+CGG | + | tig0030289:13634-13653 | Msa1443080:intron | 40.0% | |
| !! | CTTGAGGATTAGTCTCATAG+AGG | - | tig0030289:13676-13695 | None:intergenic | 40.0% |
| CTCCAAGTTCAAAGACTAAG+TGG | - | tig0030289:13788-13807 | None:intergenic | 40.0% | |
| GCAGTTAGCACTAGCAATTA+GGG | - | tig0030289:13876-13895 | None:intergenic | 40.0% | |
| AGCAGTTAGCACTAGCAATT+AGG | - | tig0030289:13877-13896 | None:intergenic | 40.0% | |
| ! | ATCTGAAGTTAGTGCTTGTG+TGG | + | tig0030289:13897-13916 | Msa1443080:intron | 40.0% |
| AAGTTAGTGCTTGTGTGGAA+AGG | + | tig0030289:13902-13921 | Msa1443080:intron | 40.0% | |
| TTTCTGCACATGAATATGCC+CGG | + | tig0030289:14355-14374 | Msa1443080:intron | 40.0% | |
| AGTTCCATCAATTATCAGGC+CGG | - | tig0030289:14377-14396 | None:intergenic | 40.0% | |
| CTCAGACATTCTATTAGGCA+TGG | + | tig0030289:14499-14518 | Msa1443080:CDS | 40.0% | |
| CCCAATTGTTATACTCTGCA+TGG | + | tig0030289:14541-14560 | Msa1443080:CDS | 40.0% | |
| TGTTATACTCTGCATGGATG+GGG | + | tig0030289:14547-14566 | Msa1443080:CDS | 40.0% | |
| TTCCTCCTACATCAGATTCT+TGG | + | tig0030289:14708-14727 | Msa1443080:CDS | 40.0% | |
| TCCTCCTACATCAGATTCTT+GGG | + | tig0030289:14709-14728 | Msa1443080:CDS | 40.0% | |
| TAAGTAGAGATAGCGACAAG+AGG | - | tig0030289:14910-14929 | None:intergenic | 40.0% | |
| TCTTGTCGCTATCTCTACTT+AGG | + | tig0030289:14909-14928 | Msa1443080:intron | 40.0% | |
| !! | TGTTGTCTCAAGCTTTGGAT+AGG | + | tig0030289:14959-14978 | Msa1443080:CDS | 40.0% |
| CAATGACAGGCTTCTCTTTA+AGG | - | tig0030289:15050-15069 | None:intergenic | 40.0% | |
| AATTAACAGCTCAGTGGCAA+TGG | - | tig0030289:15165-15184 | None:intergenic | 40.0% | |
| AGACGTTGAACACGACTTTA+GGG | + | tig0030289:15231-15250 | Msa1443080:intron | 40.0% | |
| TCCGTCGCAAACATCATATA+TGG | - | tig0030289:15406-15425 | None:intergenic | 40.0% | |
| CACTAGAAGACACAGAGTTT+GGG | - | tig0030289:15501-15520 | None:intergenic | 40.0% | |
| ! | AGTCGCAATATTTGTTGGGA+CGG | - | tig0030289:15539-15558 | None:intergenic | 40.0% |
| CTACAAGACAAAAGGGACTT+TGG | - | tig0030289:15641-15660 | None:intergenic | 40.0% | |
| ! | TCCCTTTTGTCTTGTAGTGA+CGG | + | tig0030289:15644-15663 | Msa1443080:intron | 40.0% |
| TGCATAACCGATTAACGACA+TGG | + | tig0030289:15985-16004 | Msa1443080:three_prime_UTR | 40.0% | |
| !! | TCTTTTGGGAACCACATGTG+GGG | + | tig0030289:11490-11509 | Msa1443080:five_prime_UTR | 45.0% |
| GAATTGGTTGGAAACGAGCA+AGG | + | tig0030289:11652-11671 | Msa1443080:CDS | 45.0% | |
| GGACCACAAATTTCATGAGC+TGG | + | tig0030289:11690-11709 | Msa1443080:CDS | 45.0% | |
| AGATGGTAAGCTCTCCTTGA+AGG | + | tig0030289:11723-11742 | Msa1443080:CDS | 45.0% | |
| ! | TCCGGTGGGAATATGCTTTT+TGG | + | tig0030289:12314-12333 | Msa1443080:intron | 45.0% |
| GATTCTGCCTGAAAGGAGAT+TGG | - | tig0030289:12389-12408 | None:intergenic | 45.0% | |
| ATCTCCTTTCAGGCAGAATC+TGG | + | tig0030289:12389-12408 | Msa1443080:intron | 45.0% | |
| GACCTCAACTAAACACTCCA+AGG | + | tig0030289:12468-12487 | Msa1443080:intron | 45.0% | |
| ! | AACACTCCAAGGTATTCCCA+CGG | + | tig0030289:12479-12498 | Msa1443080:intron | 45.0% |
| TTGTGGGTGTGAAAAGGCAA+AGG | + | tig0030289:12829-12848 | Msa1443080:intron | 45.0% | |
| TGTTTGGTAAGGCAAGGCAA+AGG | - | tig0030289:12872-12891 | None:intergenic | 45.0% | |
| TTGCCTTGCCTTACCAAACA+TGG | + | tig0030289:12872-12891 | Msa1443080:intron | 45.0% | |
| TCATGATGACAGGAAACTGG+GGG | - | tig0030289:12993-13012 | None:intergenic | 45.0% | |
| GGTTCATGATGACAGGAAAC+TGG | - | tig0030289:12996-13015 | None:intergenic | 45.0% | |
| GTTCCATCAATTATCAGGCC+GGG | - | tig0030289:14376-14395 | None:intergenic | 45.0% | |
| GGCCTGATAATTGATGGAAC+TGG | + | tig0030289:14376-14395 | Msa1443080:intron | 45.0% | |
| GAGCAAGAGTGAGTTCAAAG+AGG | + | tig0030289:14472-14491 | Msa1443080:CDS | 45.0% | |
| ATTCTATTAGGCATGGCTGC+TGG | + | tig0030289:14506-14525 | Msa1443080:CDS | 45.0% | |
| ACCCAAGAATCTGATGTAGG+AGG | - | tig0030289:14713-14732 | None:intergenic | 45.0% | |
| AAAGCTTGAGACAACAGTGC+CGG | - | tig0030289:14955-14974 | None:intergenic | 45.0% | |
| ! | CAAGAAAGTGGCATTGAGTG+TGG | + | tig0030289:15017-15036 | Msa1443080:CDS | 45.0% |
| TCACTGTGAGCTACAATGAC+AGG | - | tig0030289:15063-15082 | None:intergenic | 45.0% | |
| ACGTCTGCATACAAGAGAGT+AGG | - | tig0030289:15217-15236 | None:intergenic | 45.0% | |
| CAGACGTTGAACACGACTTT+AGG | + | tig0030289:15230-15249 | Msa1443080:intron | 45.0% | |
| TCTTCAATTGCACCAACTGG+AGG | - | tig0030289:15341-15360 | None:intergenic | 45.0% | |
| ! | TCCAGTTGGTGCAATTGAAG+AGG | + | tig0030289:15340-15359 | Msa1443080:CDS | 45.0% |
| ACCTCTTCAATTGCACCAAC+TGG | - | tig0030289:15344-15363 | None:intergenic | 45.0% | |
| CCACTAGAAGACACAGAGTT+TGG | - | tig0030289:15502-15521 | None:intergenic | 45.0% | |
| CCAAACTCTGTGTCTTCTAG+TGG | + | tig0030289:15499-15518 | Msa1443080:intron | 45.0% | |
| ! | AGACAAAAGGGACTTTGGGA+CGG | - | tig0030289:15636-15655 | None:intergenic | 45.0% |
| CCCGTCACTACAAGACAAAA+GGG | - | tig0030289:15648-15667 | None:intergenic | 45.0% | |
| ! | CCCTTTTGTCTTGTAGTGAC+GGG | + | tig0030289:15645-15664 | Msa1443080:intron | 45.0% |
| ACCCGTCACTACAAGACAAA+AGG | - | tig0030289:15649-15668 | None:intergenic | 45.0% | |
| TAACCGATTAACGACATGGC+TGG | + | tig0030289:15989-16008 | Msa1443080:three_prime_UTR | 45.0% | |
| TGACCAGCCATGTCGTTAAT+CGG | - | tig0030289:15995-16014 | None:intergenic | 45.0% | |
| GTTAAGTGTGTCCCCACATG+TGG | - | tig0030289:11504-11523 | None:intergenic | 50.0% | |
| GAAAACCAGAAGAGGAACGG+AGG | + | tig0030289:11598-11617 | Msa1443080:CDS | 50.0% | |
| GAGCTGGATAAGGACAGAGA+TGG | + | tig0030289:11706-11725 | Msa1443080:CDS | 50.0% | |
| AGAAAGGGGCTAACTTGGTC+AGG | - | tig0030289:12098-12117 | None:intergenic | 50.0% | |
| CCATGATAACATGGTCGGTC+CGG | + | tig0030289:12296-12315 | Msa1443080:intron | 50.0% | |
| GTCACCAGATTCTGCCTGAA+AGG | - | tig0030289:12396-12415 | None:intergenic | 50.0% | |
| TCTAAGCCGTGGGAATACCT+TGG | - | tig0030289:12488-12507 | None:intergenic | 50.0% | |
| TAGTCTCATAGCGGCCCAAA+GGG | - | tig0030289:12511-12530 | None:intergenic | 50.0% | |
| TTAGTCTCATAGCGGCCCAA+AGG | - | tig0030289:12512-12531 | None:intergenic | 50.0% | |
| TGGGTGTGAAAAGGCAAAGG+TGG | + | tig0030289:12832-12851 | Msa1443080:intron | 50.0% | |
| AAGAACGCAGCAAGTGTACC+AGG | + | tig0030289:13504-13523 | Msa1443080:intron | 50.0% | |
| GACATCCATTACGCACTCCA+AGG | + | tig0030289:13623-13642 | Msa1443080:intron | 50.0% | |
| ACTAATCCTCAAGTCGGCAG+CGG | + | tig0030289:13683-13702 | Msa1443080:intron | 50.0% | |
| ATGCCCGGCCTGATAATTGA+TGG | + | tig0030289:14370-14389 | Msa1443080:intron | 50.0% | |
| GGAAGACTCGATGTTGATCG+AGG | + | tig0030289:14683-14702 | Msa1443080:CDS | 50.0% | |
| GGCACTGTTGTCTCAAGCTT+TGG | + | tig0030289:14954-14973 | Msa1443080:CDS | 50.0% | |
| CTTGCAGGTGACACTAGATG+TGG | + | tig0030289:15295-15314 | Msa1443080:CDS | 50.0% | |
| ACTGGAGGTAAACCAGCAGA+TGG | - | tig0030289:15326-15345 | None:intergenic | 50.0% | |
| !! | TCTGCTGGTTTACCTCCAGT+TGG | + | tig0030289:15326-15345 | Msa1443080:CDS | 50.0% |
| AACCAGAAGAGGAACGGAGG+AGG | + | tig0030289:11601-11620 | Msa1443080:CDS | 55.0% | |
| GGAGGAGGAGAGGTTCTTGA+TGG | + | tig0030289:11616-11635 | Msa1443080:CDS | 55.0% | |
| !! | AGCACCGATGTCAGCAACAG+CGG | - | tig0030289:11758-11777 | None:intergenic | 55.0% |
| !! | TGCTCTTGGTTTGCCTGCTC+AGG | + | tig0030289:11777-11796 | Msa1443080:CDS | 55.0% |
| !! | GCTCTTGGTTTGCCTGCTCA+GGG | + | tig0030289:11778-11797 | Msa1443080:CDS | 55.0% |
| CCGGACCGACCATGTTATCA+TGG | - | tig0030289:12299-12318 | None:intergenic | 55.0% | |
| TGATAACATGGTCGGTCCGG+TGG | + | tig0030289:12299-12318 | Msa1443080:intron | 55.0% | |
| GATAACATGGTCGGTCCGGT+GGG | + | tig0030289:12300-12319 | Msa1443080:intron | 55.0% | |
| TTCCCACGGCTTAGACCCTT+TGG | + | tig0030289:12493-12512 | Msa1443080:intron | 55.0% | |
| TCCCACGGCTTAGACCCTTT+GGG | + | tig0030289:12494-12513 | Msa1443080:intron | 55.0% | |
| CTAATCCTCAAGTCGGCAGC+GGG | + | tig0030289:13684-13703 | Msa1443080:intron | 55.0% | |
| AACAGCTCAGTGGCAATGGC+AGG | - | tig0030289:15161-15180 | None:intergenic | 55.0% | |
| GATGTGGTGTCTCCATCTGC+TGG | + | tig0030289:15311-15330 | Msa1443080:CDS | 55.0% | |
| CTCCTCCTCCGTTCCTCTTC+TGG | - | tig0030289:11606-11625 | None:intergenic | 60.0% | |
| GAAGAGGAACGGAGGAGGAG+AGG | + | tig0030289:11606-11625 | Msa1443080:CDS | 60.0% | |
| ! | AGCGGGCTCAAGCTCCTTCA+AGG | - | tig0030289:11740-11759 | None:intergenic | 60.0% |
| GAGCCCGCTGTTGCTGACAT+CGG | + | tig0030289:11751-11770 | Msa1443080:CDS | 60.0% | |
| ! | GCACCGATGTCAGCAACAGC+GGG | - | tig0030289:11757-11776 | None:intergenic | 60.0% |
| !! | GCTGACATCGGTGCTGCTCT+TGG | + | tig0030289:11763-11782 | Msa1443080:CDS | 60.0% |
| TCAGGAGTAGTGCCCTGAGC+AGG | - | tig0030289:11793-11812 | None:intergenic | 60.0% | |
| GCCCAAAGGGTCTAAGCCGT+GGG | - | tig0030289:12498-12517 | None:intergenic | 60.0% | |
| TCCTTGAGTCTGCAGCGCAG+CGG | + | tig0030289:12532-12551 | Msa1443080:intron | 60.0% | |
| GGCCCAAAGGGTCTAAGCCG+TGG | - | tig0030289:12499-12518 | None:intergenic | 65.0% | |
| TCCGCTGCGCTGCAGACTCA+AGG | - | tig0030289:12536-12555 | None:intergenic | 65.0% | |
| CTGCAGCGCAGCGGAACATC+CGG | + | tig0030289:12541-12560 | Msa1443080:intron | 65.0% | |
| !! | GATGTCCCGCTGCCGACTTG+AGG | - | tig0030289:13692-13711 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030289 | gene | 11452 | 16144 | 11452 | ID=Msa1443080;Name=Msa1443080 |
| tig0030289 | mRNA | 11452 | 16144 | 11452 | ID=Msa1443080-mRNA-1;Parent=Msa1443080;Name=Msa1443080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=143|1|1|1|1|1|5|188|362 |
| tig0030289 | exon | 11452 | 11834 | 11452 | ID=Msa1443080-mRNA-1:exon:13727;Parent=Msa1443080-mRNA-1 |
| tig0030289 | exon | 14434 | 14730 | 14434 | ID=Msa1443080-mRNA-1:exon:13728;Parent=Msa1443080-mRNA-1 |
| tig0030289 | exon | 14931 | 15143 | 14931 | ID=Msa1443080-mRNA-1:exon:13729;Parent=Msa1443080-mRNA-1 |
| tig0030289 | exon | 15233 | 15361 | 15233 | ID=Msa1443080-mRNA-1:exon:13730;Parent=Msa1443080-mRNA-1 |
| tig0030289 | exon | 15747 | 16144 | 15747 | ID=Msa1443080-mRNA-1:exon:13731;Parent=Msa1443080-mRNA-1 |
| tig0030289 | five_prime_UTR | 11452 | 11594 | 11452 | ID=Msa1443080-mRNA-1:five_prime_utr;Parent=Msa1443080-mRNA-1 |
| tig0030289 | CDS | 11595 | 11834 | 11595 | ID=Msa1443080-mRNA-1:cds;Parent=Msa1443080-mRNA-1 |
| tig0030289 | CDS | 14434 | 14730 | 14434 | ID=Msa1443080-mRNA-1:cds;Parent=Msa1443080-mRNA-1 |
| tig0030289 | CDS | 14931 | 15143 | 14931 | ID=Msa1443080-mRNA-1:cds;Parent=Msa1443080-mRNA-1 |
| tig0030289 | CDS | 15233 | 15361 | 15233 | ID=Msa1443080-mRNA-1:cds;Parent=Msa1443080-mRNA-1 |
| tig0030289 | CDS | 15747 | 15956 | 15747 | ID=Msa1443080-mRNA-1:cds;Parent=Msa1443080-mRNA-1 |
| tig0030289 | three_prime_UTR | 15957 | 16144 | 15957 | ID=Msa1443080-mRNA-1:three_prime_utr;Parent=Msa1443080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
