Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365090 | XP_003604022.1 | 97.790 | 362 | 8 | 0 | 1 | 362 | 1 | 362 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365090 | G7J7U7 | 97.790 | 362 | 8 | 0 | 1 | 362 | 1 | 362 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365090 | Msa1367340 | 0.969833 | 1.044257e-130 | -8.615850e-47 |
| Msa1365090 | Msa1443080 | 0.955428 | 3.102727e-113 | -8.615850e-47 |
| Msa0380240 | Msa1365090 | 0.899675 | 1.566301e-77 | -8.615850e-47 |
| Msa0524160 | Msa1365090 | 0.939906 | 5.771276e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365090 | MtrunA17_Chr3g0145431 | 97.790 | 362 | 8 | 0 | 1 | 362 | 1 | 362 | 0.0 | 715 |
| Msa1365090 | MtrunA17_Chr4g0038631 | 73.297 | 367 | 87 | 4 | 4 | 362 | 7 | 370 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365090 | AT4G38810.2 | 64.407 | 354 | 117 | 4 | 11 | 358 | 13 | 363 | 3.09e-161 | 456 |
| Msa1365090 | AT4G38810.1 | 58.984 | 256 | 96 | 4 | 109 | 358 | 1 | 253 | 3.31e-100 | 297 |
| Msa1365090 | AT5G28830.1 | 23.102 | 303 | 205 | 8 | 53 | 345 | 39 | 323 | 1.34e-11 | 65.5 |
Find 90 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACAGGCTTCTCTTTA+AGG | 0.119543 | tig0018197:+144603 | None:intergenic |
| TTCATTATTCACCGTCTTAA+AGG | 0.134887 | tig0018197:+143881 | None:intergenic |
| CTCCTCCTCCGTTCCTCTTC+TGG | 0.176059 | tig0018197:+148050 | None:intergenic |
| TGCTCTTGGTTTGCCTGCTC+AGG | 0.235368 | tig0018197:-147876 | Msa1365090:CDS |
| GATATAATTGACATTTAAAT+AGG | 0.241147 | tig0018197:-148196 | Msa1365090:five_prime_UTR |
| CAGACGTTGAACACGACTTT+AGG | 0.248256 | tig0018197:-144420 | Msa1365090:CDS |
| TCTTGATGGCTCCAACATTA+TGG | 0.250150 | tig0018197:-148023 | Msa1365090:CDS |
| ATAGGAGTATGACTTTCTTT+TGG | 0.264622 | tig0018197:-148178 | Msa1365090:five_prime_UTR |
| TTCCTCCTACATCAGATTCT+TGG | 0.291211 | tig0018197:-144942 | Msa1365090:CDS |
| TCAACTCAACAATATTATTA+TGG | 0.334349 | tig0018197:+148128 | None:intergenic |
| GGCACTGTTGTCTCAAGCTT+TGG | 0.358693 | tig0018197:-144696 | Msa1365090:CDS |
| GAACTTGTTATTGAAGCTTT+TGG | 0.363865 | tig0018197:-144988 | Msa1365090:CDS |
| TGACCAGCCATGTCGTTAAT+CGG | 0.385714 | tig0018197:+143658 | None:intergenic |
| ACCTCTTCAATTGCACCAAC+TGG | 0.390172 | tig0018197:+144309 | None:intergenic |
| GTTCTCTCAGACATTCTATT+AGG | 0.394979 | tig0018197:-145156 | Msa1365090:CDS |
| AATATCAAAGGATTACTTGC+AGG | 0.400730 | tig0018197:-144370 | Msa1365090:CDS |
| TCCTCCTACATCAGATTCTT+GGG | 0.401019 | tig0018197:-144941 | Msa1365090:intron |
| CTGATTCTTGTTCTTTCTTG+TGG | 0.405119 | tig0018197:+148087 | None:intergenic |
| AATGTCTCTTGATCTCTAAC+AGG | 0.406167 | tig0018197:+144668 | None:intergenic |
| CTCTGATCACATCTACTATC+AGG | 0.408189 | tig0018197:-147840 | Msa1365090:intron |
| GAACAAGAATCAGCAGTAGA+TGG | 0.411220 | tig0018197:-148077 | Msa1365090:exon |
| AGACGTTGAACACGACTTTA+GGG | 0.414927 | tig0018197:-144419 | Msa1365090:CDS |
| GCTCTTGGTTTGCCTGCTCA+GGG | 0.416449 | tig0018197:-147875 | Msa1365090:CDS |
| AGTGTAGAAGATGAGCTTAA+AGG | 0.417154 | tig0018197:+143732 | None:intergenic |
| TGGCTCCAACATTATGGAAT+TGG | 0.417894 | tig0018197:-148017 | Msa1365090:CDS |
| GATCTTCTTGAGTTTGTTAA+CGG | 0.419045 | tig0018197:-145078 | Msa1365090:CDS |
| GCTGACATCGGTGCTGCTCT+TGG | 0.421869 | tig0018197:-147890 | Msa1365090:CDS |
| AGTATCATGTTGCAGTTAGA+AGG | 0.429901 | tig0018197:-143795 | Msa1365090:CDS |
| CAACAAGTTTGAATTAGAAA+AGG | 0.439922 | tig0018197:-144528 | Msa1365090:intron |
| TATCCAGCTCATGAAATTTG+TGG | 0.442680 | tig0018197:+147960 | None:intergenic |
| GAACAAGAATAATATTAAGA+TGG | 0.443655 | tig0018197:+143702 | None:intergenic |
| TCCAACCAATTCCATAATGT+TGG | 0.447482 | tig0018197:+148012 | None:intergenic |
| TCCATGCAGAGTATAACAAT+TGG | 0.453037 | tig0018197:+145108 | None:intergenic |
| CTTGTGGTTTATTTGACTGA+GGG | 0.459556 | tig0018197:+148103 | None:intergenic |
| TTTGGAAGAATTCAAGAAAG+TGG | 0.460032 | tig0018197:-144645 | Msa1365090:CDS |
| GTCATTTCTGTATAATAACT+TGG | 0.474803 | tig0018197:+145054 | None:intergenic |
| CAAATTTCATGAGCTGGATA+AGG | 0.483471 | tig0018197:-147957 | Msa1365090:CDS |
| AGCGGGCTCAAGCTCCTTCA+AGG | 0.483560 | tig0018197:+147916 | None:intergenic |
| GGAGGAGGAGAGGTTCTTGA+TGG | 0.488101 | tig0018197:-148037 | Msa1365090:CDS |
| TAGTAGATGTGATCAGAGTC+AGG | 0.489937 | tig0018197:+147845 | None:intergenic |
| GCAAGGATTCAACAAGTTTG+TGG | 0.490981 | tig0018197:-147984 | Msa1365090:CDS |
| TTGTTATACTCTGCATGGAT+GGG | 0.494421 | tig0018197:-145104 | Msa1365090:CDS |
| GGACCACAAATTTCATGAGC+TGG | 0.499403 | tig0018197:-147963 | Msa1365090:CDS |
| TGTTGTCTCAAGCTTTGGAT+AGG | 0.500092 | tig0018197:-144691 | Msa1365090:CDS |
| CGAGAAATTAAATATGATCC+AGG | 0.503924 | tig0018197:+143590 | None:intergenic |
| TCAGGAGTAGTGCCCTGAGC+AGG | 0.508149 | tig0018197:+147863 | None:intergenic |
| ATTCTATTAGGCATGGCTGC+TGG | 0.509238 | tig0018197:-145144 | Msa1365090:CDS |
| GCACCGATGTCAGCAACAGC+GGG | 0.511448 | tig0018197:+147899 | None:intergenic |
| TACCTATGCAAATTGTTACC+TGG | 0.513205 | tig0018197:-143608 | Msa1365090:three_prime_UTR |
| AACCAGAAGAGGAACGGAGG+AGG | 0.517853 | tig0018197:-148052 | Msa1365090:CDS |
| AGATGGTAAGCTCTCCTTGA+AGG | 0.518287 | tig0018197:-147930 | Msa1365090:CDS |
| TCACTGTGAGCTACAATGAC+AGG | 0.521245 | tig0018197:+144590 | None:intergenic |
| ATTGTTATACTCTGCATGGA+TGG | 0.521997 | tig0018197:-145105 | Msa1365090:CDS |
| AACAAGAATAATATTAAGAT+GGG | 0.524551 | tig0018197:+143703 | None:intergenic |
| TCTTGTGGTTTATTTGACTG+AGG | 0.524629 | tig0018197:+148102 | None:intergenic |
| CCATGCAGAGTATAACAATT+GGG | 0.524748 | tig0018197:+145109 | None:intergenic |
| TCTGCTGGTTTACCTCCAGT+TGG | 0.524964 | tig0018197:-144324 | Msa1365090:CDS |
| CTCAGACATTCTATTAGGCA+TGG | 0.528189 | tig0018197:-145151 | Msa1365090:CDS |
| GATGTGGTGTCTCCATCTGC+TGG | 0.529207 | tig0018197:-144339 | Msa1365090:CDS |
| GAGCCCGCTGTTGCTGACAT+CGG | 0.531602 | tig0018197:-147902 | Msa1365090:CDS |
| CCCAATTGTTATACTCTGCA+TGG | 0.539018 | tig0018197:-145109 | Msa1365090:CDS |
| AAGCTTCAATAACAAGTTCG+CGG | 0.551585 | tig0018197:+144992 | None:intergenic |
| GAATTTGAAGAAACAGCAAT+GGG | 0.554960 | tig0018197:+143768 | None:intergenic |
| GTGTTGAATGAATTCACTCA+TGG | 0.557877 | tig0018197:-145216 | Msa1365090:CDS |
| TCCAACATTATGGAATTGGT+TGG | 0.565142 | tig0018197:-148013 | Msa1365090:CDS |
| TGTTATACTCTGCATGGATG+GGG | 0.565150 | tig0018197:-145103 | Msa1365090:CDS |
| TAACCGATTAACGACATGGC+TGG | 0.572052 | tig0018197:-143661 | Msa1365090:three_prime_UTR |
| TGAATTTGAAGAAACAGCAA+TGG | 0.575925 | tig0018197:+143767 | None:intergenic |
| GAAGAGGAACGGAGGAGGAG+AGG | 0.578320 | tig0018197:-148047 | Msa1365090:CDS |
| AGCACCGATGTCAGCAACAG+CGG | 0.580542 | tig0018197:+147898 | None:intergenic |
| ATTACCCAAGAATCTGATGT+AGG | 0.586136 | tig0018197:+144937 | None:intergenic |
| GAATTGGTTGGAAACGAGCA+AGG | 0.589020 | tig0018197:-148001 | Msa1365090:CDS |
| TATTAGTGAAGCCTTTAAGA+CGG | 0.589119 | tig0018197:-143892 | Msa1365090:CDS |
| AAAGCTTGAGACAACAGTGC+CGG | 0.602253 | tig0018197:+144698 | None:intergenic |
| GGAAGACTCGATGTTGATCG+AGG | 0.609171 | tig0018197:-144967 | Msa1365090:CDS |
| TCCAGTTGGTGCAATTGAAG+AGG | 0.610698 | tig0018197:-144310 | Msa1365090:intron |
| ACTGGAGGTAAACCAGCAGA+TGG | 0.614242 | tig0018197:+144327 | None:intergenic |
| ACCCAAGAATCTGATGTAGG+AGG | 0.614585 | tig0018197:+144940 | None:intergenic |
| AGTAGATGGAAAACCAGAAG+AGG | 0.616094 | tig0018197:-148063 | Msa1365090:exon |
| GTTAAGTGTGTCCCCACATG+TGG | 0.623821 | tig0018197:+148152 | None:intergenic |
| TGCATAACCGATTAACGACA+TGG | 0.635170 | tig0018197:-143665 | Msa1365090:three_prime_UTR |
| CAAGAAAGTGGCATTGAGTG+TGG | 0.640256 | tig0018197:-144633 | Msa1365090:CDS |
| ATGGAAAACCAGAAGAGGAA+CGG | 0.642985 | tig0018197:-148058 | Msa1365090:CDS |
| TCTTCAATTGCACCAACTGG+AGG | 0.650559 | tig0018197:+144312 | None:intergenic |
| GAGCAAGAGTGAGTTCAAAG+AGG | 0.651775 | tig0018197:-145178 | Msa1365090:CDS |
| ATCCAGGTAACAATTTGCAT+AGG | 0.662558 | tig0018197:+143606 | None:intergenic |
| AATCTGCCAAAAGATCGAAA+CGG | 0.663483 | tig0018197:-144396 | Msa1365090:CDS |
| GAAAACCAGAAGAGGAACGG+AGG | 0.663724 | tig0018197:-148055 | Msa1365090:CDS |
| GAGCTGGATAAGGACAGAGA+TGG | 0.674340 | tig0018197:-147947 | Msa1365090:CDS |
| CTTGCAGGTGACACTAGATG+TGG | 0.729256 | tig0018197:-144355 | Msa1365090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTATCAATGTAT+TGG | - | tig0018197:144090-144109 | Msa1365090:intron | 10.0% |
| !! | CAAAAATATAAATAATCTTA+AGG | + | tig0018197:146327-146346 | None:intergenic | 10.0% |
| !!! | AAAATTTTAATTGAAATACT+GGG | - | tig0018197:147912-147931 | Msa1365090:CDS | 10.0% |
| !! | AATAAAAATAAATTTGTACT+TGG | + | tig0018197:148103-148122 | None:intergenic | 10.0% |
| !! | GATATAATTGACATTTAAAT+AGG | - | tig0018197:143535-143554 | Msa1365090:three_prime_UTR | 15.0% |
| !! | ATTACATAATAAAAAGAGAA+AGG | + | tig0018197:143924-143943 | None:intergenic | 15.0% |
| !! | AACATATATATTACCAATAT+GGG | + | tig0018197:144664-144683 | None:intergenic | 15.0% |
| !! | AAACATATATATTACCAATA+TGG | + | tig0018197:144665-144684 | None:intergenic | 15.0% |
| !! | CAGAAATATAATTAATCTTA+GGG | + | tig0018197:145180-145199 | None:intergenic | 15.0% |
| !! | ACAGAAATATAATTAATCTT+AGG | + | tig0018197:145181-145200 | None:intergenic | 15.0% |
| !!! | AATTTCTAAAAATTAAGACT+GGG | - | tig0018197:145257-145276 | Msa1365090:intron | 15.0% |
| !! | TTTATTATTCAACTCAAAAT+GGG | + | tig0018197:145624-145643 | None:intergenic | 15.0% |
| !! | ATTTATTATTCAACTCAAAA+TGG | + | tig0018197:145625-145644 | None:intergenic | 15.0% |
| !!! | ACTTTGATATATTTTATTTG+TGG | - | tig0018197:147267-147286 | Msa1365090:intron | 15.0% |
| !!! | GAAAATTTTAATTGAAATAC+TGG | - | tig0018197:147911-147930 | Msa1365090:CDS | 15.0% |
| !!! | AAATTTTAATTGAAATACTG+GGG | - | tig0018197:147913-147932 | Msa1365090:CDS | 15.0% |
| !! | AACAAGAATAATATTAAGAT+GGG | + | tig0018197:148031-148050 | None:intergenic | 15.0% |
| !! | TCAACTCAACAATATTATTA+TGG | + | tig0018197:143606-143625 | None:intergenic | 20.0% |
| !! | GTTATCATGGATAATTAATT+AGG | + | tig0018197:144363-144382 | None:intergenic | 20.0% |
| !! | ATTAATTATCCATGATAACA+TGG | - | tig0018197:144364-144383 | Msa1365090:CDS | 20.0% |
| !! | GTCAAAAATCATAATTACAA+TGG | + | tig0018197:144528-144547 | None:intergenic | 20.0% |
| !! | GTGATATAAACTTATAAAGT+TGG | - | tig0018197:144805-144824 | Msa1365090:intron | 20.0% |
| !!! | ATTTTCCGTATAAATGATAT+AGG | - | tig0018197:145136-145155 | Msa1365090:CDS | 20.0% |
| !! | GATAACCTATATCATTTATA+CGG | + | tig0018197:145144-145163 | None:intergenic | 20.0% |
| !!! | CAATTTCTAAAAATTAAGAC+TGG | - | tig0018197:145256-145275 | Msa1365090:intron | 20.0% |
| !! | TCTGAATATGTATGTTAAAA+TGG | - | tig0018197:145349-145368 | Msa1365090:intron | 20.0% |
| !! | TTATTATTCAACTCAAAATG+GGG | + | tig0018197:145623-145642 | None:intergenic | 20.0% |
| !! | TTATTAGAGTGATAAAAAGT+TGG | - | tig0018197:145898-145917 | Msa1365090:intron | 20.0% |
| !! | TAACCAAATATGGTAAATAT+GGG | - | tig0018197:146058-146077 | Msa1365090:intron | 20.0% |
| !! | ATGATTATATATCAATGATG+TGG | - | tig0018197:145028-145047 | Msa1365090:CDS | 20.0% |
| !! | ATCTTAAGGAAAACAATATA+CGG | + | tig0018197:146313-146332 | None:intergenic | 20.0% |
| !! | TATTGATCTTGAAAATACAA+TGG | + | tig0018197:146371-146390 | None:intergenic | 20.0% |
| !! | GAACAAGAATAAAAATTTGA+TGG | - | tig0018197:146479-146498 | Msa1365090:intron | 20.0% |
| !! | GAACAAGAATAATATTAAGA+TGG | + | tig0018197:148032-148051 | None:intergenic | 20.0% |
| ! | AGCTTAAAGAAAAAACACAA+AGG | + | tig0018197:144144-144163 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTCTTTAAGCTT+TGG | - | tig0018197:144145-144164 | Msa1365090:intron | 25.0% |
| !!! | TTTTTCTTTAAGCTTTGGTT+TGG | - | tig0018197:144150-144169 | Msa1365090:intron | 25.0% |
| ! | CATGGATAATTAATTAGGAT+AGG | + | tig0018197:144358-144377 | None:intergenic | 25.0% |
| ! | ATAAAAAGCAAAATTGAGCA+GGG | + | tig0018197:144430-144449 | None:intergenic | 25.0% |
| ! | AATAAAAAGCAAAATTGAGC+AGG | + | tig0018197:144431-144450 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTCTTCTTCTTCT+AGG | - | tig0018197:144502-144521 | Msa1365090:intron | 25.0% |
| ! | AGTATATGCTAAAACATTGA+CGG | - | tig0018197:144698-144717 | Msa1365090:CDS | 25.0% |
| !! | CTTCAAGTTCAAAGATTAAA+CGG | + | tig0018197:144730-144749 | None:intergenic | 25.0% |
| ! | TTAATGTAATGATGAACTCA+AGG | - | tig0018197:144841-144860 | Msa1365090:intron | 25.0% |
| ! | TAATGTAATGATGAACTCAA+GGG | - | tig0018197:144842-144861 | Msa1365090:intron | 25.0% |
| !! | GAAAATCTGATTTGATCAAA+TGG | + | tig0018197:145122-145141 | None:intergenic | 25.0% |
| ! | ATCTTAGGGAAAACAATATA+GGG | + | tig0018197:145166-145185 | None:intergenic | 25.0% |
| ! | AATCTTAGGGAAAACAATAT+AGG | + | tig0018197:145167-145186 | None:intergenic | 25.0% |
| ! | TACTGAATTTGAAAATGCAA+TGG | + | tig0018197:145228-145247 | None:intergenic | 25.0% |
| ! | TATGTATGTTAAAATGGATG+TGG | - | tig0018197:145355-145374 | Msa1365090:intron | 25.0% |
| ! | TATCTAGGCAAAACATTATA+GGG | + | tig0018197:145543-145562 | None:intergenic | 25.0% |
| ! | ATATCTAGGCAAAACATTAT+AGG | + | tig0018197:145544-145563 | None:intergenic | 25.0% |
| ! | TACTTTATGCTACAATATCT+AGG | + | tig0018197:145558-145577 | None:intergenic | 25.0% |
| ! | AGGCAAAATTGATCTTTAAA+TGG | - | tig0018197:146003-146022 | Msa1365090:intron | 25.0% |
| ! | ATCTTTAAATGGAATCCTTT+GGG | - | tig0018197:146014-146033 | Msa1365090:intron | 25.0% |
| ! | CATATTTACCATATTTGGTT+AGG | + | tig0018197:146059-146078 | None:intergenic | 25.0% |
| ! | CTAACCAAATATGGTAAATA+TGG | - | tig0018197:146057-146076 | Msa1365090:intron | 25.0% |
| ! | ATAAAAGATACCTTAGAAAC+AGG | - | tig0018197:146090-146109 | Msa1365090:intron | 25.0% |
| ! | TAAAAGATACCTTAGAAACA+GGG | - | tig0018197:146091-146110 | Msa1365090:intron | 25.0% |
| !!! | TCATGTGCAGAAATTTTAAT+AGG | + | tig0018197:146429-146448 | None:intergenic | 25.0% |
| ! | GTCATTTCTGTATAATAACT+TGG | + | tig0018197:146680-146699 | None:intergenic | 25.0% |
| !! | TTAGGTTTTTAACAACATTG+TGG | - | tig0018197:147008-147027 | Msa1365090:intron | 25.0% |
| !! | CTTTTCTAATTCAAACTTGT+TGG | + | tig0018197:147205-147224 | None:intergenic | 25.0% |
| ! | CAACAAGTTTGAATTAGAAA+AGG | - | tig0018197:147203-147222 | Msa1365090:intron | 25.0% |
| !! | ATATACTGACTAATATGCAT+TGG | + | tig0018197:147460-147479 | None:intergenic | 25.0% |
| ! | AATTTAATCAGACATTGTGA+TGG | + | tig0018197:147555-147574 | None:intergenic | 25.0% |
| !!! | TTTGATTTTACAGATGGATA+AGG | - | tig0018197:147815-147834 | Msa1365090:intron | 25.0% |
| !! | ATAGGAGTATGACTTTCTTT+TGG | - | tig0018197:143553-143572 | Msa1365090:three_prime_UTR | 30.0% |
| !! | TAGGAGTATGACTTTCTTTT+GGG | - | tig0018197:143554-143573 | Msa1365090:three_prime_UTR | 30.0% |
| ACCACATACACAAAAAGAAA+GGG | + | tig0018197:144191-144210 | None:intergenic | 30.0% | |
| AACCACATACACAAAAAGAA+AGG | + | tig0018197:144192-144211 | None:intergenic | 30.0% | |
| ATGTGATACTTTATAGAAGC+TGG | - | tig0018197:144320-144339 | Msa1365090:CDS | 30.0% | |
| ATTATCCATGATAACATGGT+CGG | - | tig0018197:144368-144387 | Msa1365090:CDS | 30.0% | |
| AGACAGACTAATGAAAAAAC+CGG | + | tig0018197:144641-144660 | None:intergenic | 30.0% | |
| TCAGTTAGCACTAGTAATTT+GGG | + | tig0018197:144874-144893 | None:intergenic | 30.0% | |
| ATCAGTTAGCACTAGTAATT+TGG | + | tig0018197:144875-144894 | None:intergenic | 30.0% | |
| ! | ATATCTGAAGTTAGTACTTG+TGG | - | tig0018197:144893-144912 | Msa1365090:intron | 30.0% |
| ! | TATCTGAAGTTAGTACTTGT+GGG | - | tig0018197:144894-144913 | Msa1365090:intron | 30.0% |
| GTGCTCAGATAATTGATAAA+TGG | - | tig0018197:145047-145066 | Msa1365090:CDS | 30.0% | |
| TTTCCATGAGATATCTATCT+AGG | - | tig0018197:145391-145410 | Msa1365090:intron | 30.0% | |
| TTCCATGAGATATCTATCTA+GGG | - | tig0018197:145392-145411 | Msa1365090:intron | 30.0% | |
| ATCTAGGCAAAACATTATAG+GGG | + | tig0018197:145542-145561 | None:intergenic | 30.0% | |
| TTTAAGCCGTAATTATACCT+TGG | + | tig0018197:145724-145743 | None:intergenic | 30.0% | |
| TGTCACTCATGTGAAAAAAT+CGG | + | tig0018197:145795-145814 | None:intergenic | 30.0% | |
| GATCTTTAAATGGAATCCTT+TGG | - | tig0018197:146013-146032 | Msa1365090:intron | 30.0% | |
| GTTCCCATATTTACCATATT+TGG | + | tig0018197:146064-146083 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTCCCTGTTTCTA+AGG | + | tig0018197:146103-146122 | None:intergenic | 30.0% |
| AACAGGGAGAAAAAAAATAG+AGG | - | tig0018197:146107-146126 | Msa1365090:intron | 30.0% | |
| TTCATGATGACAGTAAACTT+AGG | + | tig0018197:146180-146199 | None:intergenic | 30.0% | |
| TACAGATTGTATGATTGCAT+AGG | + | tig0018197:146203-146222 | None:intergenic | 30.0% | |
| !! | GGAGAGCTCATATTTTTATT+CGG | + | tig0018197:146292-146311 | None:intergenic | 30.0% |
| !! | ATTTGATGGACTTGTTGTAT+AGG | - | tig0018197:146493-146512 | Msa1365090:intron | 30.0% |
| !! | GATCTTCTTGAGTTTGTTAA+CGG | - | tig0018197:146653-146672 | Msa1365090:intron | 30.0% |
| !! | GTTTTGAATCTGAGAGAATA+TGG | + | tig0018197:146705-146724 | None:intergenic | 30.0% |
| !!! | GAACTTGTTATTGAAGCTTT+TGG | - | tig0018197:146743-146762 | Msa1365090:intron | 30.0% |
| ! | TTTTAACAACATTGTGGATC+CGG | - | tig0018197:147014-147033 | Msa1365090:intron | 30.0% |
| ! | TAGAGATCAAGAGACATTTT+TGG | - | tig0018197:147068-147087 | Msa1365090:intron | 30.0% |
| TTTGGAAGAATTCAAGAAAG+TGG | - | tig0018197:147086-147105 | Msa1365090:intron | 30.0% | |
| ! | ATTTTTCCGTTTCGATCTTT+TGG | + | tig0018197:147344-147363 | None:intergenic | 30.0% |
| TCGAAACGGAAAAATATCAA+AGG | - | tig0018197:147349-147368 | Msa1365090:intron | 30.0% | |
| AATATCAAAGGATTACTTGC+AGG | - | tig0018197:147361-147380 | Msa1365090:intron | 30.0% | |
| ! | ATATCAATCTGTCTCCATTT+TGG | - | tig0018197:147512-147531 | Msa1365090:intron | 30.0% |
| TTTCAGTCGCAATATTTGTT+GGG | + | tig0018197:147624-147643 | None:intergenic | 30.0% | |
| ATTTCAGTCGCAATATTTGT+TGG | + | tig0018197:147625-147644 | None:intergenic | 30.0% | |
| !! | GATGTGTTTGATTTTACAGA+TGG | - | tig0018197:147809-147828 | Msa1365090:intron | 30.0% |
| ! | TATTAGTGAAGCCTTTAAGA+CGG | - | tig0018197:147839-147858 | Msa1365090:intron | 30.0% |
| TTCATTATTCACCGTCTTAA+AGG | + | tig0018197:147853-147872 | None:intergenic | 30.0% | |
| GAATTTGAAGAAACAGCAAT+GGG | + | tig0018197:147966-147985 | None:intergenic | 30.0% | |
| TGAATTTGAAGAAACAGCAA+TGG | + | tig0018197:147967-147986 | None:intergenic | 30.0% | |
| CGAGAAATTAAATATGATCC+AGG | + | tig0018197:148144-148163 | None:intergenic | 30.0% | |
| CTTGTGGTTTATTTGACTGA+GGG | + | tig0018197:143631-143650 | None:intergenic | 35.0% | |
| TCTTGTGGTTTATTTGACTG+AGG | + | tig0018197:143632-143651 | None:intergenic | 35.0% | |
| CTGATTCTTGTTCTTTCTTG+TGG | + | tig0018197:143647-143666 | None:intergenic | 35.0% | |
| TCCAACATTATGGAATTGGT+TGG | - | tig0018197:143718-143737 | Msa1365090:CDS | 35.0% | |
| TCCAACCAATTCCATAATGT+TGG | + | tig0018197:143722-143741 | None:intergenic | 35.0% | |
| TATCCAGCTCATGAAATTTG+TGG | + | tig0018197:143774-143793 | None:intergenic | 35.0% | |
| CAAATTTCATGAGCTGGATA+AGG | - | tig0018197:143774-143793 | Msa1365090:CDS | 35.0% | |
| !! | GTTGCTCTTCACTTTTGTTT+TGG | - | tig0018197:143992-144011 | Msa1365090:intron | 35.0% |
| CCACATACACAAAAAGAAAG+GGG | + | tig0018197:144190-144209 | None:intergenic | 35.0% | |
| TTGAAGACGAATTCTGAACT+TGG | - | tig0018197:144253-144272 | Msa1365090:intron | 35.0% | |
| AATTAGGATAGGACACTTCT+GGG | + | tig0018197:144347-144366 | None:intergenic | 35.0% | |
| TAATTAGGATAGGACACTTC+TGG | + | tig0018197:144348-144367 | None:intergenic | 35.0% | |
| AAAGGAGATTGGCAGAAAAA+TGG | + | tig0018197:144455-144474 | None:intergenic | 35.0% | |
| TAATGATGAACTCAAGGGAA+GGG | - | tig0018197:144847-144866 | Msa1365090:intron | 35.0% | |
| TTATGCGTCTTTACCATGTT+TGG | + | tig0018197:144969-144988 | None:intergenic | 35.0% | |
| ACATGGTAAAGACGCATAAA+AGG | - | tig0018197:144970-144989 | Msa1365090:CDS | 35.0% | |
| ! | TTTTTGTCTTTCTGTGGCTA+AGG | + | tig0018197:144998-145017 | None:intergenic | 35.0% |
| !!! | CCTCTATTTTTGTCTTTCTG+TGG | + | tig0018197:145004-145023 | None:intergenic | 35.0% |
| CCACAGAAAGACAAAAATAG+AGG | - | tig0018197:145001-145020 | Msa1365090:CDS | 35.0% | |
| TGCAGATTGTATGATTCCAT+AGG | + | tig0018197:145098-145117 | None:intergenic | 35.0% | |
| TCCATGAGATATCTATCTAG+GGG | - | tig0018197:145393-145412 | Msa1365090:intron | 35.0% | |
| TAGACAAGTGTCTGTTATGA+AGG | - | tig0018197:145487-145506 | Msa1365090:intron | 35.0% | |
| AGTCTCATAGAGGATTCAAA+TGG | + | tig0018197:145747-145766 | None:intergenic | 35.0% | |
| TATGAGACTAATCCTCAAGT+CGG | - | tig0018197:145758-145777 | Msa1365090:intron | 35.0% | |
| TAAGTGGTATGAGTCATCAA+TGG | + | tig0018197:145853-145872 | None:intergenic | 35.0% | |
| ! | TACCACTTAGTCTTTGAACT+TGG | - | tig0018197:145864-145883 | Msa1365090:intron | 35.0% |
| ACACATTTGCTTTATCCCAA+AGG | + | tig0018197:146032-146051 | None:intergenic | 35.0% | |
| GTGTCTTACCTAACCAAATA+TGG | - | tig0018197:146048-146067 | Msa1365090:intron | 35.0% | |
| GTGGTCAGATATTTGATGAA+TGG | - | tig0018197:146153-146172 | Msa1365090:intron | 35.0% | |
| !!! | GTTGTCTAGTTTTGATCGAA+TGG | + | tig0018197:146234-146253 | None:intergenic | 35.0% |
| GGACACGCATAAATTATTGA+AGG | + | tig0018197:146408-146427 | None:intergenic | 35.0% | |
| TTCCAGTTCCATCAATTATC+AGG | + | tig0018197:146462-146481 | None:intergenic | 35.0% | |
| GTGTTGAATGAATTCACTCA+TGG | - | tig0018197:146515-146534 | Msa1365090:intron | 35.0% | |
| GTTCTCTCAGACATTCTATT+AGG | - | tig0018197:146575-146594 | Msa1365090:intron | 35.0% | |
| CCATGCAGAGTATAACAATT+GGG | + | tig0018197:146625-146644 | None:intergenic | 35.0% | |
| TCCATGCAGAGTATAACAAT+TGG | + | tig0018197:146626-146645 | None:intergenic | 35.0% | |
| ATTGTTATACTCTGCATGGA+TGG | - | tig0018197:146626-146645 | Msa1365090:intron | 35.0% | |
| TTGTTATACTCTGCATGGAT+GGG | - | tig0018197:146627-146646 | Msa1365090:intron | 35.0% | |
| AAGCTTCAATAACAAGTTCG+CGG | + | tig0018197:146742-146761 | None:intergenic | 35.0% | |
| ATTACCCAAGAATCTGATGT+AGG | + | tig0018197:146797-146816 | None:intergenic | 35.0% | |
| ACACAACATGTTTCAATGCA+AGG | + | tig0018197:146848-146867 | None:intergenic | 35.0% | |
| AATGTCTCTTGATCTCTAAC+AGG | + | tig0018197:147066-147085 | None:intergenic | 35.0% | |
| ! | CACAGTGAAAACACTTTTGA+TGG | - | tig0018197:147156-147175 | Msa1365090:intron | 35.0% |
| ! | GAAAACACTTTTGATGGAAG+TGG | - | tig0018197:147162-147181 | Msa1365090:intron | 35.0% |
| AAAGTGAATTAACAGCTCAG+TGG | + | tig0018197:147252-147271 | None:intergenic | 35.0% | |
| AATCTGCCAAAAGATCGAAA+CGG | - | tig0018197:147335-147354 | Msa1365090:intron | 35.0% | |
| TCCATATATGATGTTTGCGA+CGG | - | tig0018197:147483-147502 | Msa1365090:intron | 35.0% | |
| CCTTTGAATCTGTTCCAAAA+TGG | + | tig0018197:147529-147548 | None:intergenic | 35.0% | |
| !!! | CCATTTTGGAACAGATTCAA+AGG | - | tig0018197:147526-147545 | Msa1365090:intron | 35.0% |
| !! | TCTCGTCACAACTCATTTTT+GGG | + | tig0018197:147667-147686 | None:intergenic | 35.0% |
| ! | ATCTCGTCACAACTCATTTT+TGG | + | tig0018197:147668-147687 | None:intergenic | 35.0% |
| TACAAGACAAAAGGGACTTT+GGG | + | tig0018197:147721-147740 | None:intergenic | 35.0% | |
| AGTATCATGTTGCAGTTAGA+AGG | - | tig0018197:147936-147955 | Msa1365090:CDS | 35.0% | |
| AGTGTAGAAGATGAGCTTAA+AGG | + | tig0018197:148002-148021 | None:intergenic | 35.0% | |
| TACCTATGCAAATTGTTACC+TGG | - | tig0018197:148123-148142 | Msa1365090:five_prime_UTR | 35.0% | |
| ATCCAGGTAACAATTTGCAT+AGG | + | tig0018197:148128-148147 | None:intergenic | 35.0% | |
| !! | TTTCTTTTGGGAACCACATG+TGG | - | tig0018197:143566-143585 | Msa1365090:three_prime_UTR | 40.0% |
| !! | TTCTTTTGGGAACCACATGT+GGG | - | tig0018197:143567-143586 | Msa1365090:three_prime_UTR | 40.0% |
| GAACAAGAATCAGCAGTAGA+TGG | - | tig0018197:143654-143673 | Msa1365090:three_prime_UTR | 40.0% | |
| AGTAGATGGAAAACCAGAAG+AGG | - | tig0018197:143668-143687 | Msa1365090:three_prime_UTR | 40.0% | |
| ATGGAAAACCAGAAGAGGAA+CGG | - | tig0018197:143673-143692 | Msa1365090:three_prime_UTR | 40.0% | |
| ! | TCTTGATGGCTCCAACATTA+TGG | - | tig0018197:143708-143727 | Msa1365090:exon | 40.0% |
| TGGCTCCAACATTATGGAAT+TGG | - | tig0018197:143714-143733 | Msa1365090:exon | 40.0% | |
| GCAAGGATTCAACAAGTTTG+TGG | - | tig0018197:143747-143766 | Msa1365090:CDS | 40.0% | |
| TAGTAGATGTGATCAGAGTC+AGG | + | tig0018197:143889-143908 | None:intergenic | 40.0% | |
| CTCTGATCACATCTACTATC+AGG | - | tig0018197:143891-143910 | Msa1365090:CDS | 40.0% | |
| CAAAAAGAAAGGGGCTAACT+TGG | + | tig0018197:144181-144200 | None:intergenic | 40.0% | |
| ! | CCCCTTTCTTTTTGTGTATG+TGG | - | tig0018197:144187-144206 | Msa1365090:intron | 40.0% |
| ATTAGGATAGGACACTTCTG+GGG | + | tig0018197:144346-144365 | None:intergenic | 40.0% | |
| ! | ACCAAAAAGCATATTCCCAC+CGG | + | tig0018197:144395-144414 | None:intergenic | 40.0% |
| ! | TTTTCTGCCAATCTCCTTTC+AGG | - | tig0018197:144456-144475 | Msa1365090:intron | 40.0% |
| TACCTTGGAGTCTTTAGTTG+AGG | + | tig0018197:144550-144569 | None:intergenic | 40.0% | |
| !! | CTCAAGGATTAGTCTCATAG+CGG | + | tig0018197:144597-144616 | None:intergenic | 40.0% |
| ! | CATTAGTCTGTCTCCCATAT+TGG | - | tig0018197:144648-144667 | Msa1365090:CDS | 40.0% |
| GTAATGATGAACTCAAGGGA+AGG | - | tig0018197:144846-144865 | Msa1365090:intron | 40.0% | |
| TAGTACTTGTGGGTGTGAAA+AGG | - | tig0018197:144904-144923 | Msa1365090:intron | 40.0% | |
| AGGCAAAGGTGGTCTTTAAA+TGG | - | tig0018197:144924-144943 | Msa1365090:intron | 40.0% | |
| TTACCATGTTTGGTAAGGCA+AGG | + | tig0018197:144959-144978 | None:intergenic | 40.0% | |
| CGTCTTTACCATGTTTGGTA+AGG | + | tig0018197:144964-144983 | None:intergenic | 40.0% | |
| TTCATGATGACAGGAAACTG+GGG | + | tig0018197:145075-145094 | None:intergenic | 40.0% | |
| GTTCATGATGACAGGAAACT+GGG | + | tig0018197:145076-145095 | None:intergenic | 40.0% | |
| TTCCTGTCATCATGAACCTA+TGG | - | tig0018197:145079-145098 | Msa1365090:CDS | 40.0% | |
| TTCCATAGGTTCATGATGAC+AGG | + | tig0018197:145084-145103 | None:intergenic | 40.0% | |
| ATTAAGACTGGGAAGACGTT+TGG | - | tig0018197:145268-145287 | Msa1365090:intron | 40.0% | |
| TCCCCTAGATAGATATCTCA+TGG | + | tig0018197:145397-145416 | None:intergenic | 40.0% | |
| ! | GGGCATTTGAATGAGCTTTT+TGG | + | tig0018197:145522-145541 | None:intergenic | 40.0% |
| !!! | ATGGGGAAACTTATTTTGCC+TGG | + | tig0018197:145606-145625 | None:intergenic | 40.0% |
| TTATACCTTGGAGTGCGTAA+TGG | + | tig0018197:145712-145731 | None:intergenic | 40.0% | |
| CGCACTCCAAGGTATAATTA+CGG | - | tig0018197:145715-145734 | Msa1365090:intron | 40.0% | |
| !! | CTTGAGGATTAGTCTCATAG+AGG | + | tig0018197:145757-145776 | None:intergenic | 40.0% |
| CTCCAAGTTCAAAGACTAAG+TGG | + | tig0018197:145869-145888 | None:intergenic | 40.0% | |
| GCAGTTAGCACTAGCAATTA+GGG | + | tig0018197:145957-145976 | None:intergenic | 40.0% | |
| AGCAGTTAGCACTAGCAATT+AGG | + | tig0018197:145958-145977 | None:intergenic | 40.0% | |
| ! | ATCTGAAGTTAGTGCTTGTG+TGG | - | tig0018197:145978-145997 | Msa1365090:intron | 40.0% |
| AAGTTAGTGCTTGTGTGGAA+AGG | - | tig0018197:145983-146002 | Msa1365090:intron | 40.0% | |
| TTTCTGCACATGAATATGCC+CGG | - | tig0018197:146436-146455 | Msa1365090:intron | 40.0% | |
| AGTTCCATCAATTATCAGGC+CGG | + | tig0018197:146458-146477 | None:intergenic | 40.0% | |
| CTCAGACATTCTATTAGGCA+TGG | - | tig0018197:146580-146599 | Msa1365090:intron | 40.0% | |
| CCCAATTGTTATACTCTGCA+TGG | - | tig0018197:146622-146641 | Msa1365090:intron | 40.0% | |
| TGTTATACTCTGCATGGATG+GGG | - | tig0018197:146628-146647 | Msa1365090:intron | 40.0% | |
| TTCCTCCTACATCAGATTCT+TGG | - | tig0018197:146789-146808 | Msa1365090:intron | 40.0% | |
| TCCTCCTACATCAGATTCTT+GGG | - | tig0018197:146790-146809 | Msa1365090:intron | 40.0% | |
| TAAGTAGAGATAGCGACAAG+AGG | + | tig0018197:146991-147010 | None:intergenic | 40.0% | |
| TCTTGTCGCTATCTCTACTT+AGG | - | tig0018197:146990-147009 | Msa1365090:intron | 40.0% | |
| !! | TGTTGTCTCAAGCTTTGGAT+AGG | - | tig0018197:147040-147059 | Msa1365090:intron | 40.0% |
| CAATGACAGGCTTCTCTTTA+AGG | + | tig0018197:147131-147150 | None:intergenic | 40.0% | |
| AATTAACAGCTCAGTGGCAA+TGG | + | tig0018197:147246-147265 | None:intergenic | 40.0% | |
| AGACGTTGAACACGACTTTA+GGG | - | tig0018197:147312-147331 | Msa1365090:intron | 40.0% | |
| TCCGTCGCAAACATCATATA+TGG | + | tig0018197:147487-147506 | None:intergenic | 40.0% | |
| CACTAGAAGACACAGAGTTT+GGG | + | tig0018197:147582-147601 | None:intergenic | 40.0% | |
| ! | AGTCGCAATATTTGTTGGGA+CGG | + | tig0018197:147620-147639 | None:intergenic | 40.0% |
| CTACAAGACAAAAGGGACTT+TGG | + | tig0018197:147722-147741 | None:intergenic | 40.0% | |
| ! | TCCCTTTTGTCTTGTAGTGA+CGG | - | tig0018197:147725-147744 | Msa1365090:intron | 40.0% |
| TGCATAACCGATTAACGACA+TGG | - | tig0018197:148066-148085 | Msa1365090:exon | 40.0% | |
| !! | TCTTTTGGGAACCACATGTG+GGG | - | tig0018197:143568-143587 | Msa1365090:three_prime_UTR | 45.0% |
| GAATTGGTTGGAAACGAGCA+AGG | - | tig0018197:143730-143749 | Msa1365090:CDS | 45.0% | |
| GGACCACAAATTTCATGAGC+TGG | - | tig0018197:143768-143787 | Msa1365090:CDS | 45.0% | |
| AGATGGTAAGCTCTCCTTGA+AGG | - | tig0018197:143801-143820 | Msa1365090:CDS | 45.0% | |
| ! | TCCGGTGGGAATATGCTTTT+TGG | - | tig0018197:144391-144410 | Msa1365090:CDS | 45.0% |
| GATTCTGCCTGAAAGGAGAT+TGG | + | tig0018197:144466-144485 | None:intergenic | 45.0% | |
| ATCTCCTTTCAGGCAGAATC+TGG | - | tig0018197:144466-144485 | Msa1365090:intron | 45.0% | |
| GACCTCAACTAAAGACTCCA+AGG | - | tig0018197:144545-144564 | Msa1365090:CDS | 45.0% | |
| ! | AAGACTCCAAGGTATTCCCA+CGG | - | tig0018197:144556-144575 | Msa1365090:CDS | 45.0% |
| TCTAAACCGTGGGAATACCT+TGG | + | tig0018197:144565-144584 | None:intergenic | 45.0% | |
| TTGTGGGTGTGAAAAGGCAA+AGG | - | tig0018197:144910-144929 | Msa1365090:intron | 45.0% | |
| TGTTTGGTAAGGCAAGGCAA+AGG | + | tig0018197:144953-144972 | None:intergenic | 45.0% | |
| TTGCCTTGCCTTACCAAACA+TGG | - | tig0018197:144953-144972 | Msa1365090:CDS | 45.0% | |
| TCATGATGACAGGAAACTGG+GGG | + | tig0018197:145074-145093 | None:intergenic | 45.0% | |
| GGTTCATGATGACAGGAAAC+TGG | + | tig0018197:145077-145096 | None:intergenic | 45.0% | |
| GTTCCATCAATTATCAGGCC+GGG | + | tig0018197:146457-146476 | None:intergenic | 45.0% | |
| GGCCTGATAATTGATGGAAC+TGG | - | tig0018197:146457-146476 | Msa1365090:intron | 45.0% | |
| GAGCAAGAGTGAGTTCAAAG+AGG | - | tig0018197:146553-146572 | Msa1365090:intron | 45.0% | |
| ATTCTATTAGGCATGGCTGC+TGG | - | tig0018197:146587-146606 | Msa1365090:intron | 45.0% | |
| ACCCAAGAATCTGATGTAGG+AGG | + | tig0018197:146794-146813 | None:intergenic | 45.0% | |
| AAAGCTTGAGACAACAGTGC+CGG | + | tig0018197:147036-147055 | None:intergenic | 45.0% | |
| ! | CAAGAAAGTGGCATTGAGTG+TGG | - | tig0018197:147098-147117 | Msa1365090:intron | 45.0% |
| TCACTGTGAGCTACAATGAC+AGG | + | tig0018197:147144-147163 | None:intergenic | 45.0% | |
| ACGTCTGCATACAAGAGAGT+AGG | + | tig0018197:147298-147317 | None:intergenic | 45.0% | |
| CAGACGTTGAACACGACTTT+AGG | - | tig0018197:147311-147330 | Msa1365090:intron | 45.0% | |
| TCTTCAATTGCACCAACTGG+AGG | + | tig0018197:147422-147441 | None:intergenic | 45.0% | |
| ! | TCCAGTTGGTGCAATTGAAG+AGG | - | tig0018197:147421-147440 | Msa1365090:intron | 45.0% |
| ACCTCTTCAATTGCACCAAC+TGG | + | tig0018197:147425-147444 | None:intergenic | 45.0% | |
| CCACTAGAAGACACAGAGTT+TGG | + | tig0018197:147583-147602 | None:intergenic | 45.0% | |
| CCAAACTCTGTGTCTTCTAG+TGG | - | tig0018197:147580-147599 | Msa1365090:intron | 45.0% | |
| ! | AGACAAAAGGGACTTTGGGA+CGG | + | tig0018197:147717-147736 | None:intergenic | 45.0% |
| CCCGTCACTACAAGACAAAA+GGG | + | tig0018197:147729-147748 | None:intergenic | 45.0% | |
| ! | CCCTTTTGTCTTGTAGTGAC+GGG | - | tig0018197:147726-147745 | Msa1365090:intron | 45.0% |
| ACCCGTCACTACAAGACAAA+AGG | + | tig0018197:147730-147749 | None:intergenic | 45.0% | |
| TAACCGATTAACGACATGGC+TGG | - | tig0018197:148070-148089 | Msa1365090:exon | 45.0% | |
| TGACCAGCCATGTCGTTAAT+CGG | + | tig0018197:148076-148095 | None:intergenic | 45.0% | |
| GTTAAGTGTGTCCCCACATG+TGG | + | tig0018197:143582-143601 | None:intergenic | 50.0% | |
| GAAAACCAGAAGAGGAACGG+AGG | - | tig0018197:143676-143695 | Msa1365090:three_prime_UTR | 50.0% | |
| GAGCTGGATAAGGACAGAGA+TGG | - | tig0018197:143784-143803 | Msa1365090:CDS | 50.0% | |
| AGAAAGGGGCTAACTTGGTC+AGG | + | tig0018197:144176-144195 | None:intergenic | 50.0% | |
| CCATGATAACATGGTCGGTC+CGG | - | tig0018197:144373-144392 | Msa1365090:CDS | 50.0% | |
| GTCACCAGATTCTGCCTGAA+AGG | + | tig0018197:144473-144492 | None:intergenic | 50.0% | |
| TTCCCACGGTTTAGACCCTT+TGG | - | tig0018197:144570-144589 | Msa1365090:CDS | 50.0% | |
| TCCCACGGTTTAGACCCTTT+GGG | - | tig0018197:144571-144590 | Msa1365090:CDS | 50.0% | |
| TAGTCTCATAGCGGCCCAAA+GGG | + | tig0018197:144588-144607 | None:intergenic | 50.0% | |
| TTAGTCTCATAGCGGCCCAA+AGG | + | tig0018197:144589-144608 | None:intergenic | 50.0% | |
| TGGGTGTGAAAAGGCAAAGG+TGG | - | tig0018197:144913-144932 | Msa1365090:intron | 50.0% | |
| AAGAACGCAGCAAGTGTACC+AGG | - | tig0018197:145585-145604 | Msa1365090:intron | 50.0% | |
| GACATCCATTACGCACTCCA+AGG | - | tig0018197:145704-145723 | Msa1365090:intron | 50.0% | |
| ACTAATCCTCAAGTCGGCAG+CGG | - | tig0018197:145764-145783 | Msa1365090:intron | 50.0% | |
| ATGCCCGGCCTGATAATTGA+TGG | - | tig0018197:146451-146470 | Msa1365090:intron | 50.0% | |
| GGAAGACTCGATGTTGATCG+AGG | - | tig0018197:146764-146783 | Msa1365090:intron | 50.0% | |
| GGCACTGTTGTCTCAAGCTT+TGG | - | tig0018197:147035-147054 | Msa1365090:intron | 50.0% | |
| CTTGCAGGTGACACTAGATG+TGG | - | tig0018197:147376-147395 | Msa1365090:intron | 50.0% | |
| ACTGGAGGTAAACCAGCAGA+TGG | + | tig0018197:147407-147426 | None:intergenic | 50.0% | |
| !! | TCTGCTGGTTTACCTCCAGT+TGG | - | tig0018197:147407-147426 | Msa1365090:intron | 50.0% |
| AACCAGAAGAGGAACGGAGG+AGG | - | tig0018197:143679-143698 | Msa1365090:three_prime_UTR | 55.0% | |
| GGAGGAGGAGAGGTTCTTGA+TGG | - | tig0018197:143694-143713 | Msa1365090:three_prime_UTR | 55.0% | |
| !! | AGCACCGATGTCAGCAACAG+CGG | + | tig0018197:143836-143855 | None:intergenic | 55.0% |
| !! | TGCTCTTGGTTTGCCTGCTC+AGG | - | tig0018197:143855-143874 | Msa1365090:CDS | 55.0% |
| !! | GCTCTTGGTTTGCCTGCTCA+GGG | - | tig0018197:143856-143875 | Msa1365090:CDS | 55.0% |
| CCGGACCGACCATGTTATCA+TGG | + | tig0018197:144376-144395 | None:intergenic | 55.0% | |
| TGATAACATGGTCGGTCCGG+TGG | - | tig0018197:144376-144395 | Msa1365090:CDS | 55.0% | |
| GATAACATGGTCGGTCCGGT+GGG | - | tig0018197:144377-144396 | Msa1365090:CDS | 55.0% | |
| GCCCAAAGGGTCTAAACCGT+GGG | + | tig0018197:144575-144594 | None:intergenic | 55.0% | |
| CTAATCCTCAAGTCGGCAGC+GGG | - | tig0018197:145765-145784 | Msa1365090:intron | 55.0% | |
| AACAGCTCAGTGGCAATGGC+AGG | + | tig0018197:147242-147261 | None:intergenic | 55.0% | |
| GATGTGGTGTCTCCATCTGC+TGG | - | tig0018197:147392-147411 | Msa1365090:intron | 55.0% | |
| CTCCTCCTCCGTTCCTCTTC+TGG | + | tig0018197:143684-143703 | None:intergenic | 60.0% | |
| GAAGAGGAACGGAGGAGGAG+AGG | - | tig0018197:143684-143703 | Msa1365090:three_prime_UTR | 60.0% | |
| ! | AGCGGGCTCAAGCTCCTTCA+AGG | + | tig0018197:143818-143837 | None:intergenic | 60.0% |
| GAGCCCGCTGTTGCTGACAT+CGG | - | tig0018197:143829-143848 | Msa1365090:CDS | 60.0% | |
| ! | GCACCGATGTCAGCAACAGC+GGG | + | tig0018197:143835-143854 | None:intergenic | 60.0% |
| !! | GCTGACATCGGTGCTGCTCT+TGG | - | tig0018197:143841-143860 | Msa1365090:CDS | 60.0% |
| TCAGGAGTAGTGCCCTGAGC+AGG | + | tig0018197:143871-143890 | None:intergenic | 60.0% | |
| GGCCCAAAGGGTCTAAACCG+TGG | + | tig0018197:144576-144595 | None:intergenic | 60.0% | |
| CCTTGAGTCTGCAGCTGCAG+CGG | - | tig0018197:144610-144629 | Msa1365090:CDS | 60.0% | |
| TGCAGCTGCAGCGGAACATC+CGG | - | tig0018197:144619-144638 | Msa1365090:CDS | 60.0% | |
| CCGCTGCAGCTGCAGACTCA+AGG | + | tig0018197:144613-144632 | None:intergenic | 65.0% | |
| !! | GATGTCCCGCTGCCGACTTG+AGG | + | tig0018197:145773-145792 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018197 | gene | 143529 | 148224 | 143529 | ID=Msa1365090;Name=Msa1365090 |
| tig0018197 | mRNA | 143529 | 148224 | 143529 | ID=Msa1365090-mRNA-1;Parent=Msa1365090;Name=Msa1365090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=144|1|1|1|1|1|5|187|362 |
| tig0018197 | exon | 143529 | 143925 | 143529 | ID=Msa1365090-mRNA-1:exon:14407;Parent=Msa1365090-mRNA-1 |
| tig0018197 | exon | 144311 | 144439 | 144311 | ID=Msa1365090-mRNA-1:exon:14406;Parent=Msa1365090-mRNA-1 |
| tig0018197 | exon | 144529 | 144741 | 144529 | ID=Msa1365090-mRNA-1:exon:14405;Parent=Msa1365090-mRNA-1 |
| tig0018197 | exon | 144942 | 145238 | 144942 | ID=Msa1365090-mRNA-1:exon:14404;Parent=Msa1365090-mRNA-1 |
| tig0018197 | exon | 147841 | 148224 | 147841 | ID=Msa1365090-mRNA-1:exon:14403;Parent=Msa1365090-mRNA-1 |
| tig0018197 | five_prime_UTR | 148081 | 148224 | 148081 | ID=Msa1365090-mRNA-1:five_prime_utr;Parent=Msa1365090-mRNA-1 |
| tig0018197 | CDS | 147841 | 148080 | 147841 | ID=Msa1365090-mRNA-1:cds;Parent=Msa1365090-mRNA-1 |
| tig0018197 | CDS | 144942 | 145238 | 144942 | ID=Msa1365090-mRNA-1:cds;Parent=Msa1365090-mRNA-1 |
| tig0018197 | CDS | 144529 | 144741 | 144529 | ID=Msa1365090-mRNA-1:cds;Parent=Msa1365090-mRNA-1 |
| tig0018197 | CDS | 144311 | 144439 | 144311 | ID=Msa1365090-mRNA-1:cds;Parent=Msa1365090-mRNA-1 |
| tig0018197 | CDS | 143716 | 143925 | 143716 | ID=Msa1365090-mRNA-1:cds;Parent=Msa1365090-mRNA-1 |
| tig0018197 | three_prime_UTR | 143529 | 143715 | 143529 | ID=Msa1365090-mRNA-1:three_prime_utr;Parent=Msa1365090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
