Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367340 | XP_003604022.1 | 97.521 | 363 | 8 | 1 | 1 | 363 | 1 | 362 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367340 | G7J7U7 | 97.521 | 363 | 8 | 1 | 1 | 363 | 1 | 362 | 0.0 | 710 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1361010 | Msa1367340 | 0.810275 | 1.250022e-50 | -8.615850e-47 |
| Msa1365090 | Msa1367340 | 0.969833 | 1.044257e-130 | -8.615850e-47 |
| Msa1367340 | Msa1443080 | 0.960043 | 4.104882e-118 | -8.615850e-47 |
| Msa0380240 | Msa1367340 | 0.895110 | 1.308327e-75 | -8.615850e-47 |
| Msa0505370 | Msa1367340 | 0.802900 | 4.504987e-49 | -8.615850e-47 |
| Msa0524160 | Msa1367340 | 0.944129 | 3.430678e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367340 | MtrunA17_Chr3g0145431 | 97.521 | 363 | 8 | 1 | 1 | 363 | 1 | 362 | 0.0 | 710 |
| Msa1367340 | MtrunA17_Chr4g0038631 | 73.569 | 367 | 87 | 4 | 4 | 363 | 7 | 370 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367340 | AT4G38810.2 | 64.407 | 354 | 117 | 4 | 12 | 359 | 13 | 363 | 3.74e-161 | 456 |
| Msa1367340 | AT4G38810.1 | 58.984 | 256 | 96 | 4 | 110 | 359 | 1 | 253 | 3.54e-100 | 297 |
| Msa1367340 | AT5G28830.1 | 23.102 | 303 | 205 | 8 | 54 | 346 | 39 | 323 | 1.15e-11 | 65.5 |
Find 95 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACAGGCTTCTCTTTA+AGG | 0.119543 | tig0018513:-29655 | None:intergenic |
| TTCATTATTCACCGTCTTAA+AGG | 0.134887 | tig0018513:-30377 | None:intergenic |
| CTCCTCCTCCGTTCCTCTTC+TGG | 0.176059 | tig0018513:-26170 | None:intergenic |
| TGCTCTTGGTTTGCCTGCTC+AGG | 0.235368 | tig0018513:+26347 | Msa1367340:CDS |
| CAGACGTTGAACACGACTTT+AGG | 0.248256 | tig0018513:+29838 | Msa1367340:intron |
| TCTTGATGGCTCCAACATTA+TGG | 0.250150 | tig0018513:+26200 | Msa1367340:CDS |
| ATAGGAGTATGACTTTCTTC+TGG | 0.267860 | tig0018513:+26042 | Msa1367340:five_prime_UTR |
| TTCCTCCTACATCAGATTCT+TGG | 0.291211 | tig0018513:+29316 | Msa1367340:CDS |
| TCAACTCAACAATATTATTA+TGG | 0.334349 | tig0018513:-26092 | None:intergenic |
| GATATAATTGACATTTATAT+AGG | 0.343891 | tig0018513:+26024 | Msa1367340:five_prime_UTR |
| GGCACTGTTGTCTCAAGCTT+TGG | 0.358693 | tig0018513:+29562 | Msa1367340:CDS |
| GAACTTGTTATTGAAGCTTT+TGG | 0.363865 | tig0018513:+29270 | Msa1367340:CDS |
| TGACCAGCCATGTCGTTAAT+CGG | 0.385714 | tig0018513:-30600 | None:intergenic |
| ACCTCTTCAATTGCACCAAC+TGG | 0.390172 | tig0018513:-29949 | None:intergenic |
| GTTCTCTCAGACATTCTATT+AGG | 0.394979 | tig0018513:+29102 | Msa1367340:CDS |
| AATATCAAAGGATTACTTGC+AGG | 0.400730 | tig0018513:+29888 | Msa1367340:CDS |
| TCCTCCTACATCAGATTCTT+GGG | 0.401019 | tig0018513:+29317 | Msa1367340:CDS |
| CTGATTCTTGTTCTTTCTTG+TGG | 0.405119 | tig0018513:-26133 | None:intergenic |
| AATGTCTCTTGATCTCTAAC+AGG | 0.406167 | tig0018513:-29590 | None:intergenic |
| CTCTGATCACATCTACTATC+AGG | 0.408189 | tig0018513:+26383 | Msa1367340:CDS |
| GAACAAGAATCAGCAGTAGA+TGG | 0.411220 | tig0018513:+26143 | Msa1367340:exon |
| AGACGTTGAACACGACTTTA+GGG | 0.414927 | tig0018513:+29839 | Msa1367340:intron |
| GCTCTTGGTTTGCCTGCTCA+GGG | 0.416449 | tig0018513:+26348 | Msa1367340:CDS |
| AGTGTAGAAGATGAGCTTAA+AGG | 0.417154 | tig0018513:-30526 | None:intergenic |
| TGGCTCCAACATTATGGAAT+TGG | 0.417894 | tig0018513:+26206 | Msa1367340:CDS |
| GATCTTCTTGAGTTTGTTAA+CGG | 0.419045 | tig0018513:+29180 | Msa1367340:CDS |
| GCTGACATCGGTGCTGCTCT+TGG | 0.421869 | tig0018513:+26333 | Msa1367340:CDS |
| TAGGAGTATGACTTTCTTCT+GGG | 0.425834 | tig0018513:+26043 | Msa1367340:five_prime_UTR |
| AGTATCATGTTGCAGTTAGA+AGG | 0.429901 | tig0018513:+30463 | Msa1367340:CDS |
| CAACAAGTTTGAATTAGAAA+AGG | 0.439922 | tig0018513:+29730 | Msa1367340:CDS |
| TATCCAGCTCATGAAATTTG+TGG | 0.442680 | tig0018513:-26263 | None:intergenic |
| GAACAAGAATAATATTAAGA+TGG | 0.443655 | tig0018513:-30556 | None:intergenic |
| TCCAACCAATTCCATAATGT+TGG | 0.447482 | tig0018513:-26211 | None:intergenic |
| TCCATGCAGAGTATAACAAT+TGG | 0.453037 | tig0018513:-29150 | None:intergenic |
| CTTGTGGTTTATTTGACTGA+GGG | 0.459556 | tig0018513:-26117 | None:intergenic |
| TTTGGAAGAATTCAAGAAAG+TGG | 0.460032 | tig0018513:+29613 | Msa1367340:CDS |
| CAGAAGAGGAACGGAGGAGG+AGG | 0.464641 | tig0018513:+26171 | Msa1367340:CDS |
| GTCATTTCTGTATAATAACT+TGG | 0.474803 | tig0018513:-29204 | None:intergenic |
| CAAATTTCATGAGCTGGATA+AGG | 0.483471 | tig0018513:+26266 | Msa1367340:CDS |
| AGCGGGCTCAAGCTCCTTCA+AGG | 0.483560 | tig0018513:-26307 | None:intergenic |
| GGAGGAGGAGAGGTTCTTGA+TGG | 0.487880 | tig0018513:+26186 | Msa1367340:CDS |
| TAGTAGATGTGATCAGAGTC+AGG | 0.489937 | tig0018513:-26378 | None:intergenic |
| GCAAGGATTCAACAAGTTTG+TGG | 0.490981 | tig0018513:+26239 | Msa1367340:CDS |
| TTGTTATACTCTGCATGGAT+GGG | 0.494421 | tig0018513:+29154 | Msa1367340:CDS |
| GGACCACAAATTTCATGAGC+TGG | 0.499403 | tig0018513:+26260 | Msa1367340:CDS |
| TGTTGTCTCAAGCTTTGGAT+AGG | 0.500092 | tig0018513:+29567 | Msa1367340:CDS |
| CGAGAAATTAAATATGATCC+AGG | 0.503924 | tig0018513:-30665 | None:intergenic |
| TTTCTTCTGGGAACCACATG+TGG | 0.504678 | tig0018513:+26055 | Msa1367340:five_prime_UTR |
| TCAGGAGTAGTGCCCTGAGC+AGG | 0.508149 | tig0018513:-26360 | None:intergenic |
| ATTCTATTAGGCATGGCTGC+TGG | 0.509238 | tig0018513:+29114 | Msa1367340:CDS |
| GCACCGATGTCAGCAACAGC+GGG | 0.511448 | tig0018513:-26324 | None:intergenic |
| TACCTATGCAAATTGTTACC+TGG | 0.513205 | tig0018513:+30647 | Msa1367340:three_prime_UTR |
| AACCAGAAGAGGAACGGAGG+AGG | 0.517853 | tig0018513:+26168 | Msa1367340:CDS |
| AGATGGTAAGCTCTCCTTGA+AGG | 0.518287 | tig0018513:+26293 | Msa1367340:CDS |
| TCACTGTGAGCTACAATGAC+AGG | 0.521245 | tig0018513:-29668 | None:intergenic |
| ATTGTTATACTCTGCATGGA+TGG | 0.521997 | tig0018513:+29153 | Msa1367340:CDS |
| AACAAGAATAATATTAAGAT+GGG | 0.524551 | tig0018513:-30555 | None:intergenic |
| TCTTGTGGTTTATTTGACTG+AGG | 0.524629 | tig0018513:-26118 | None:intergenic |
| CCATGCAGAGTATAACAATT+GGG | 0.524748 | tig0018513:-29149 | None:intergenic |
| TCTGCTGGTTTACCTCCAGT+TGG | 0.524964 | tig0018513:+29934 | Msa1367340:CDS |
| CTCAGACATTCTATTAGGCA+TGG | 0.528189 | tig0018513:+29107 | Msa1367340:CDS |
| GATGTGGTGTCTCCATCTGC+TGG | 0.529207 | tig0018513:+29919 | Msa1367340:CDS |
| GAGCCCGCTGTTGCTGACAT+CGG | 0.531602 | tig0018513:+26321 | Msa1367340:CDS |
| CCCAATTGTTATACTCTGCA+TGG | 0.539018 | tig0018513:+29149 | Msa1367340:CDS |
| AAGCTTCAATAACAAGTTCG+CGG | 0.551585 | tig0018513:-29266 | None:intergenic |
| GAATTTGAAGAAACAGCAAT+GGG | 0.554960 | tig0018513:-30490 | None:intergenic |
| GTGTTGAATGAATTCACTCA+TGG | 0.557877 | tig0018513:+29042 | Msa1367340:CDS |
| TCCAACATTATGGAATTGGT+TGG | 0.565142 | tig0018513:+26210 | Msa1367340:CDS |
| TGTTATACTCTGCATGGATG+GGG | 0.565150 | tig0018513:+29155 | Msa1367340:CDS |
| GAGGAACGGAGGAGGAGGAG+AGG | 0.567465 | tig0018513:+26176 | Msa1367340:CDS |
| TTCTTCTGGGAACCACATGT+GGG | 0.569452 | tig0018513:+26056 | Msa1367340:five_prime_UTR |
| TAACCGATTAACGACATGGC+TGG | 0.572052 | tig0018513:+30597 | Msa1367340:three_prime_UTR |
| TGAATTTGAAGAAACAGCAA+TGG | 0.575925 | tig0018513:-30491 | None:intergenic |
| AGCACCGATGTCAGCAACAG+CGG | 0.580542 | tig0018513:-26325 | None:intergenic |
| ATTACCCAAGAATCTGATGT+AGG | 0.586136 | tig0018513:-29321 | None:intergenic |
| GAATTGGTTGGAAACGAGCA+AGG | 0.589020 | tig0018513:+26222 | Msa1367340:CDS |
| TATTAGTGAAGCCTTTAAGA+CGG | 0.589119 | tig0018513:+30366 | Msa1367340:CDS |
| AAAGCTTGAGACAACAGTGC+CGG | 0.602253 | tig0018513:-29560 | None:intergenic |
| GGAAGACTCGATGTTGATCG+AGG | 0.609171 | tig0018513:+29291 | Msa1367340:CDS |
| TCCAGTTGGTGCAATTGAAG+AGG | 0.610698 | tig0018513:+29948 | Msa1367340:CDS |
| ACTGGAGGTAAACCAGCAGA+TGG | 0.614242 | tig0018513:-29931 | None:intergenic |
| ACCCAAGAATCTGATGTAGG+AGG | 0.614585 | tig0018513:-29318 | None:intergenic |
| AGTAGATGGAAAACCAGAAG+AGG | 0.616094 | tig0018513:+26157 | Msa1367340:exon |
| GTTAAGTGTGTCCCCACATG+TGG | 0.623821 | tig0018513:-26068 | None:intergenic |
| TGCATAACCGATTAACGACA+TGG | 0.635170 | tig0018513:+30593 | Msa1367340:three_prime_UTR |
| TCTTCTGGGAACCACATGTG+GGG | 0.637419 | tig0018513:+26057 | Msa1367340:five_prime_UTR |
| CAAGAAAGTGGCATTGAGTG+TGG | 0.640256 | tig0018513:+29625 | Msa1367340:CDS |
| ATGGAAAACCAGAAGAGGAA+CGG | 0.642985 | tig0018513:+26162 | Msa1367340:CDS |
| TCTTCAATTGCACCAACTGG+AGG | 0.650559 | tig0018513:-29946 | None:intergenic |
| GAGCAAGAGTGAGTTCAAAG+AGG | 0.651775 | tig0018513:+29080 | Msa1367340:CDS |
| ATCCAGGTAACAATTTGCAT+AGG | 0.662558 | tig0018513:-30649 | None:intergenic |
| AATCTGCCAAAAGATCGAAA+CGG | 0.663483 | tig0018513:+29862 | Msa1367340:CDS |
| GAAAACCAGAAGAGGAACGG+AGG | 0.663724 | tig0018513:+26165 | Msa1367340:CDS |
| GAGCTGGATAAGGACAGAGA+TGG | 0.674340 | tig0018513:+26276 | Msa1367340:CDS |
| CTTGCAGGTGACACTAGATG+TGG | 0.729256 | tig0018513:+29903 | Msa1367340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTATCAATGTAT+TGG | + | tig0018513:26578-26597 | Msa1367340:intron | 10.0% |
| !! | CAAAAATATAAATAATCTTA+AGG | - | tig0018513:28854-28873 | None:intergenic | 10.0% |
| !!! | AAAATTTTAATTGAAATACT+GGG | + | tig0018513:30439-30458 | Msa1367340:CDS | 10.0% |
| !! | GATATAATTGACATTTATAT+AGG | + | tig0018513:26024-26043 | Msa1367340:five_prime_UTR | 15.0% |
| !! | ATTACATAATAAAAAGAGAA+AGG | - | tig0018513:26416-26435 | None:intergenic | 15.0% |
| !! | AACATATATATTACCAATAT+GGG | - | tig0018513:27164-27183 | None:intergenic | 15.0% |
| !! | AAACATATATATTACCAATA+TGG | - | tig0018513:27165-27184 | None:intergenic | 15.0% |
| !! | CAGAAATATAATTAATCTTA+GGG | - | tig0018513:27677-27696 | None:intergenic | 15.0% |
| !! | ACAGAAATATAATTAATCTT+AGG | - | tig0018513:27678-27697 | None:intergenic | 15.0% |
| !!! | AATTTCTAAAAATTAAGACT+GGG | + | tig0018513:27754-27773 | Msa1367340:intron | 15.0% |
| !! | TTTATTATTCAACTCAAAAT+GGG | - | tig0018513:28151-28170 | None:intergenic | 15.0% |
| !! | ATTTATTATTCAACTCAAAA+TGG | - | tig0018513:28152-28171 | None:intergenic | 15.0% |
| !!! | ACTTTGATATATTTTATTTG+TGG | + | tig0018513:29794-29813 | Msa1367340:intron | 15.0% |
| !!! | GAAAATTTTAATTGAAATAC+TGG | + | tig0018513:30438-30457 | Msa1367340:CDS | 15.0% |
| !!! | AAATTTTAATTGAAATACTG+GGG | + | tig0018513:30440-30459 | Msa1367340:CDS | 15.0% |
| !! | AACAAGAATAATATTAAGAT+GGG | - | tig0018513:30558-30577 | None:intergenic | 15.0% |
| !! | GTAAATAAAAATATTGTACT+TGG | - | tig0018513:30630-30649 | None:intergenic | 15.0% |
| !! | TCAACTCAACAATATTATTA+TGG | - | tig0018513:26095-26114 | None:intergenic | 20.0% |
| !! | GTTATCATGGATAATTAATT+AGG | - | tig0018513:26851-26870 | None:intergenic | 20.0% |
| !! | ATTAATTATCCATGATAACA+TGG | + | tig0018513:26852-26871 | Msa1367340:intron | 20.0% |
| !! | GTGATATAAACTTATAAAGT+TGG | + | tig0018513:27302-27321 | Msa1367340:intron | 20.0% |
| !!! | ATTTTCCGTATAAATGATAT+AGG | + | tig0018513:27633-27652 | Msa1367340:intron | 20.0% |
| !! | GATAACCTATATCATTTATA+CGG | - | tig0018513:27641-27660 | None:intergenic | 20.0% |
| !!! | CAATTTCTAAAAATTAAGAC+TGG | + | tig0018513:27753-27772 | Msa1367340:intron | 20.0% |
| !! | TCTGAATATGTATGTTAAAA+TGG | + | tig0018513:27876-27895 | Msa1367340:intron | 20.0% |
| !! | TTATTATTCAACTCAAAATG+GGG | - | tig0018513:28150-28169 | None:intergenic | 20.0% |
| !! | TTATTAGAGTGATAAAAAGT+TGG | + | tig0018513:28425-28444 | Msa1367340:intron | 20.0% |
| !! | TAACCAAATATGGTAAATAT+GGG | + | tig0018513:28585-28604 | Msa1367340:intron | 20.0% |
| !! | ATGATTATATATCAATGATG+TGG | + | tig0018513:28661-28680 | Msa1367340:intron | 20.0% |
| !! | ATCTTAAGGAAAACAATATA+CGG | - | tig0018513:28840-28859 | None:intergenic | 20.0% |
| !! | TATTGATCTTGAAAATACAA+TGG | - | tig0018513:28898-28917 | None:intergenic | 20.0% |
| !! | GAACAAGAATAAAAATTTGA+TGG | + | tig0018513:29006-29025 | Msa1367340:intron | 20.0% |
| !! | GAACAAGAATAATATTAAGA+TGG | - | tig0018513:30559-30578 | None:intergenic | 20.0% |
| ! | AGCTTAAAGAAAAAACACAA+AGG | - | tig0018513:26632-26651 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTCTTTAAGCTT+TGG | + | tig0018513:26633-26652 | Msa1367340:intron | 25.0% |
| !!! | TTTTTCTTTAAGCTTTGGTT+TGG | + | tig0018513:26638-26657 | Msa1367340:intron | 25.0% |
| ! | CATGGATAATTAATTAGGAT+AGG | - | tig0018513:26846-26865 | None:intergenic | 25.0% |
| ! | ATAAAAAGCAAAATTGAGCA+GGG | - | tig0018513:26918-26937 | None:intergenic | 25.0% |
| ! | AATAAAAAGCAAAATTGAGC+AGG | - | tig0018513:26919-26938 | None:intergenic | 25.0% |
| ! | GTCATAAATCATAATTACAG+TGG | - | tig0018513:27026-27045 | None:intergenic | 25.0% |
| !! | CTTCAAGTTCAAAGATTAAA+CGG | - | tig0018513:27230-27249 | None:intergenic | 25.0% |
| ! | TTAATGTAATGATGAACTCA+AGG | + | tig0018513:27338-27357 | Msa1367340:intron | 25.0% |
| ! | TAATGTAATGATGAACTCAA+GGG | + | tig0018513:27339-27358 | Msa1367340:intron | 25.0% |
| !! | GAAAATCTGATTTGATCAAA+TGG | - | tig0018513:27619-27638 | None:intergenic | 25.0% |
| ! | ATCTTAGGGAAAACAATATA+GGG | - | tig0018513:27663-27682 | None:intergenic | 25.0% |
| ! | AATCTTAGGGAAAACAATAT+AGG | - | tig0018513:27664-27683 | None:intergenic | 25.0% |
| ! | TACTGAATTTGAAAATGCAA+TGG | - | tig0018513:27725-27744 | None:intergenic | 25.0% |
| ! | TATGTATGTTAAAATGGATG+TGG | + | tig0018513:27882-27901 | Msa1367340:intron | 25.0% |
| ! | TATCTAGGCAAAACATTATA+GGG | - | tig0018513:28070-28089 | None:intergenic | 25.0% |
| ! | ATATCTAGGCAAAACATTAT+AGG | - | tig0018513:28071-28090 | None:intergenic | 25.0% |
| ! | TACTTTATGCTACAATATCT+AGG | - | tig0018513:28085-28104 | None:intergenic | 25.0% |
| ! | AGGCAAAATTGATCTTTAAA+TGG | + | tig0018513:28530-28549 | Msa1367340:intron | 25.0% |
| ! | ATCTTTAAATGGAATCCTTT+GGG | + | tig0018513:28541-28560 | Msa1367340:intron | 25.0% |
| ! | CATATTTACCATATTTGGTT+AGG | - | tig0018513:28586-28605 | None:intergenic | 25.0% |
| ! | CTAACCAAATATGGTAAATA+TGG | + | tig0018513:28584-28603 | Msa1367340:intron | 25.0% |
| ! | ATAAAAGATACCTTAGAAAC+AGG | + | tig0018513:28617-28636 | Msa1367340:intron | 25.0% |
| ! | TAAAAGATACCTTAGAAACA+GGG | + | tig0018513:28618-28637 | Msa1367340:intron | 25.0% |
| !!! | TCATGTGCAGAAATTTTAAT+AGG | - | tig0018513:28956-28975 | None:intergenic | 25.0% |
| ! | GTCATTTCTGTATAATAACT+TGG | - | tig0018513:29207-29226 | None:intergenic | 25.0% |
| !! | TTAGGTTTTTAACAACATTG+TGG | + | tig0018513:29535-29554 | Msa1367340:intron | 25.0% |
| !! | CTTTTCTAATTCAAACTTGT+TGG | - | tig0018513:29732-29751 | None:intergenic | 25.0% |
| ! | CAACAAGTTTGAATTAGAAA+AGG | + | tig0018513:29730-29749 | Msa1367340:CDS | 25.0% |
| !! | ATATACTGACTAATATGCAT+TGG | - | tig0018513:29987-30006 | None:intergenic | 25.0% |
| ! | AATTTAATCAGACATTGTGA+TGG | - | tig0018513:30082-30101 | None:intergenic | 25.0% |
| !!! | TTTGATTTTACAGATGGATA+AGG | + | tig0018513:30342-30361 | Msa1367340:intron | 25.0% |
| ACCACATACACAAAAAGAAA+GGG | - | tig0018513:26679-26698 | None:intergenic | 30.0% | |
| AACCACATACACAAAAAGAA+AGG | - | tig0018513:26680-26699 | None:intergenic | 30.0% | |
| ATGTGATACTTTATAGAAGC+TGG | + | tig0018513:26808-26827 | Msa1367340:intron | 30.0% | |
| ATTATCCATGATAACATGGT+CGG | + | tig0018513:26856-26875 | Msa1367340:intron | 30.0% | |
| AGACACACTAATGAAAAAAC+CGG | - | tig0018513:27141-27160 | None:intergenic | 30.0% | |
| AGTATATGCTAAACCATTGA+CGG | + | tig0018513:27198-27217 | Msa1367340:intron | 30.0% | |
| TCAGTTAGCACTAGTAATTT+GGG | - | tig0018513:27371-27390 | None:intergenic | 30.0% | |
| ATCAGTTAGCACTAGTAATT+TGG | - | tig0018513:27372-27391 | None:intergenic | 30.0% | |
| ! | ATATCTGAAGTTAGTACTTG+TGG | + | tig0018513:27390-27409 | Msa1367340:intron | 30.0% |
| ! | TATCTGAAGTTAGTACTTGT+GGG | + | tig0018513:27391-27410 | Msa1367340:intron | 30.0% |
| GTGCTCAGATAATTGATAAA+TGG | + | tig0018513:27544-27563 | Msa1367340:intron | 30.0% | |
| TTTCCATGAGATATCTATCT+AGG | + | tig0018513:27918-27937 | Msa1367340:intron | 30.0% | |
| TTCCATGAGATATCTATCTA+GGG | + | tig0018513:27919-27938 | Msa1367340:intron | 30.0% | |
| ATCTAGGCAAAACATTATAG+GGG | - | tig0018513:28069-28088 | None:intergenic | 30.0% | |
| TTTAAGCCGTAATTATACCT+TGG | - | tig0018513:28251-28270 | None:intergenic | 30.0% | |
| TGTCACTCATGTGAAAAAAT+CGG | - | tig0018513:28322-28341 | None:intergenic | 30.0% | |
| GATCTTTAAATGGAATCCTT+TGG | + | tig0018513:28540-28559 | Msa1367340:intron | 30.0% | |
| GTTCCCATATTTACCATATT+TGG | - | tig0018513:28591-28610 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTCCCTGTTTCTA+AGG | - | tig0018513:28630-28649 | None:intergenic | 30.0% |
| AACAGGGAGAAAAAAAATAG+AGG | + | tig0018513:28634-28653 | Msa1367340:intron | 30.0% | |
| TTCATGATGACAGTAAACTT+AGG | - | tig0018513:28707-28726 | None:intergenic | 30.0% | |
| TACAGATTGTATGATTGCAT+AGG | - | tig0018513:28730-28749 | None:intergenic | 30.0% | |
| !! | GGAGAGCTCATATTTTTATT+CGG | - | tig0018513:28819-28838 | None:intergenic | 30.0% |
| !! | ATTTGATGGACTTGTTGTAT+AGG | + | tig0018513:29020-29039 | Msa1367340:intron | 30.0% |
| !! | GATCTTCTTGAGTTTGTTAA+CGG | + | tig0018513:29180-29199 | Msa1367340:CDS | 30.0% |
| !! | GTTTTGAATCTGAGAGAATA+TGG | - | tig0018513:29232-29251 | None:intergenic | 30.0% |
| !!! | GAACTTGTTATTGAAGCTTT+TGG | + | tig0018513:29270-29289 | Msa1367340:CDS | 30.0% |
| ! | TTTTAACAACATTGTGGATC+CGG | + | tig0018513:29541-29560 | Msa1367340:CDS | 30.0% |
| ! | TAGAGATCAAGAGACATTTT+TGG | + | tig0018513:29595-29614 | Msa1367340:CDS | 30.0% |
| TTTGGAAGAATTCAAGAAAG+TGG | + | tig0018513:29613-29632 | Msa1367340:CDS | 30.0% | |
| ! | ATTTTTCCGTTTCGATCTTT+TGG | - | tig0018513:29871-29890 | None:intergenic | 30.0% |
| TCGAAACGGAAAAATATCAA+AGG | + | tig0018513:29876-29895 | Msa1367340:CDS | 30.0% | |
| AATATCAAAGGATTACTTGC+AGG | + | tig0018513:29888-29907 | Msa1367340:CDS | 30.0% | |
| ! | ATATCAATCTGTCTCCATTT+TGG | + | tig0018513:30039-30058 | Msa1367340:intron | 30.0% |
| TTTCAGTCGCAATATTTGTT+GGG | - | tig0018513:30151-30170 | None:intergenic | 30.0% | |
| ATTTCAGTCGCAATATTTGT+TGG | - | tig0018513:30152-30171 | None:intergenic | 30.0% | |
| !! | GATGTGTTTGATTTTACAGA+TGG | + | tig0018513:30336-30355 | Msa1367340:intron | 30.0% |
| ! | TATTAGTGAAGCCTTTAAGA+CGG | + | tig0018513:30366-30385 | Msa1367340:CDS | 30.0% |
| TTCATTATTCACCGTCTTAA+AGG | - | tig0018513:30380-30399 | None:intergenic | 30.0% | |
| GAATTTGAAGAAACAGCAAT+GGG | - | tig0018513:30493-30512 | None:intergenic | 30.0% | |
| TGAATTTGAAGAAACAGCAA+TGG | - | tig0018513:30494-30513 | None:intergenic | 30.0% | |
| CGAGAAATTAAATATGATCC+AGG | - | tig0018513:30668-30687 | None:intergenic | 30.0% | |
| ! | ATAGGAGTATGACTTTCTTC+TGG | + | tig0018513:26042-26061 | Msa1367340:five_prime_UTR | 35.0% |
| ! | TAGGAGTATGACTTTCTTCT+GGG | + | tig0018513:26043-26062 | Msa1367340:five_prime_UTR | 35.0% |
| CTTGTGGTTTATTTGACTGA+GGG | - | tig0018513:26120-26139 | None:intergenic | 35.0% | |
| TCTTGTGGTTTATTTGACTG+AGG | - | tig0018513:26121-26140 | None:intergenic | 35.0% | |
| CTGATTCTTGTTCTTTCTTG+TGG | - | tig0018513:26136-26155 | None:intergenic | 35.0% | |
| TCCAACATTATGGAATTGGT+TGG | + | tig0018513:26210-26229 | Msa1367340:CDS | 35.0% | |
| TCCAACCAATTCCATAATGT+TGG | - | tig0018513:26214-26233 | None:intergenic | 35.0% | |
| TATCCAGCTCATGAAATTTG+TGG | - | tig0018513:26266-26285 | None:intergenic | 35.0% | |
| CAAATTTCATGAGCTGGATA+AGG | + | tig0018513:26266-26285 | Msa1367340:CDS | 35.0% | |
| !! | GTTGCTCTTCACTTTTGTTT+TGG | + | tig0018513:26480-26499 | Msa1367340:intron | 35.0% |
| CCACATACACAAAAAGAAAG+GGG | - | tig0018513:26678-26697 | None:intergenic | 35.0% | |
| TTGAAGACGAATTCTGAACT+TGG | + | tig0018513:26741-26760 | Msa1367340:intron | 35.0% | |
| AATTAGGATAGGACACTTCT+GGG | - | tig0018513:26835-26854 | None:intergenic | 35.0% | |
| TAATTAGGATAGGACACTTC+TGG | - | tig0018513:26836-26855 | None:intergenic | 35.0% | |
| AAAGGAGATTGGCAGAAAAA+TGG | - | tig0018513:26943-26962 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTTCTTCT+AGG | + | tig0018513:27000-27019 | Msa1367340:intron | 35.0% | |
| TAATGATGAACTCAAGGGAA+GGG | + | tig0018513:27344-27363 | Msa1367340:intron | 35.0% | |
| TTATGCGTCTTTACCATGTT+TGG | - | tig0018513:27466-27485 | None:intergenic | 35.0% | |
| ACATGGTAAAGACGCATAAA+AGG | + | tig0018513:27467-27486 | Msa1367340:intron | 35.0% | |
| ! | TTTTTGTCTTTCTGTGGCTA+AGG | - | tig0018513:27495-27514 | None:intergenic | 35.0% |
| !!! | CCTCTATTTTTGTCTTTCTG+TGG | - | tig0018513:27501-27520 | None:intergenic | 35.0% |
| CCACAGAAAGACAAAAATAG+AGG | + | tig0018513:27498-27517 | Msa1367340:intron | 35.0% | |
| TGCAGATTGTATGATTCCAT+AGG | - | tig0018513:27595-27614 | None:intergenic | 35.0% | |
| TCCATGAGATATCTATCTAG+GGG | + | tig0018513:27920-27939 | Msa1367340:intron | 35.0% | |
| TAGACAAGTGTCTGTTATGA+AGG | + | tig0018513:28014-28033 | Msa1367340:intron | 35.0% | |
| AGTCTCATAGAGGATTCAAA+TGG | - | tig0018513:28274-28293 | None:intergenic | 35.0% | |
| TATGAGACTAATCCTCAAGT+CGG | + | tig0018513:28285-28304 | Msa1367340:intron | 35.0% | |
| TAAGTGGTATGAGTCATCAA+TGG | - | tig0018513:28380-28399 | None:intergenic | 35.0% | |
| ! | TACCACTTAGTCTTTGAACT+TGG | + | tig0018513:28391-28410 | Msa1367340:intron | 35.0% |
| ACACATTTGCTTTATCCCAA+AGG | - | tig0018513:28559-28578 | None:intergenic | 35.0% | |
| GTGTCTTACCTAACCAAATA+TGG | + | tig0018513:28575-28594 | Msa1367340:intron | 35.0% | |
| GTGGTCAGATATTTGATGAA+TGG | + | tig0018513:28680-28699 | Msa1367340:intron | 35.0% | |
| !!! | GTTGTCTAGTTTTGATCGAA+TGG | - | tig0018513:28761-28780 | None:intergenic | 35.0% |
| GGACACGCATAAATTATTGA+AGG | - | tig0018513:28935-28954 | None:intergenic | 35.0% | |
| TTCCAGTTCCATCAATTATC+AGG | - | tig0018513:28989-29008 | None:intergenic | 35.0% | |
| GTGTTGAATGAATTCACTCA+TGG | + | tig0018513:29042-29061 | Msa1367340:CDS | 35.0% | |
| GTTCTCTCAGACATTCTATT+AGG | + | tig0018513:29102-29121 | Msa1367340:CDS | 35.0% | |
| CCATGCAGAGTATAACAATT+GGG | - | tig0018513:29152-29171 | None:intergenic | 35.0% | |
| TCCATGCAGAGTATAACAAT+TGG | - | tig0018513:29153-29172 | None:intergenic | 35.0% | |
| ATTGTTATACTCTGCATGGA+TGG | + | tig0018513:29153-29172 | Msa1367340:CDS | 35.0% | |
| TTGTTATACTCTGCATGGAT+GGG | + | tig0018513:29154-29173 | Msa1367340:CDS | 35.0% | |
| AAGCTTCAATAACAAGTTCG+CGG | - | tig0018513:29269-29288 | None:intergenic | 35.0% | |
| ATTACCCAAGAATCTGATGT+AGG | - | tig0018513:29324-29343 | None:intergenic | 35.0% | |
| ACACAACATGTTTCAATGCA+AGG | - | tig0018513:29375-29394 | None:intergenic | 35.0% | |
| AATGTCTCTTGATCTCTAAC+AGG | - | tig0018513:29593-29612 | None:intergenic | 35.0% | |
| ! | CACAGTGAAAACACTTTTGA+TGG | + | tig0018513:29683-29702 | Msa1367340:CDS | 35.0% |
| ! | GAAAACACTTTTGATGGAAG+TGG | + | tig0018513:29689-29708 | Msa1367340:CDS | 35.0% |
| AAAGTGAATTAACAGCTCAG+TGG | - | tig0018513:29779-29798 | None:intergenic | 35.0% | |
| AATCTGCCAAAAGATCGAAA+CGG | + | tig0018513:29862-29881 | Msa1367340:CDS | 35.0% | |
| TCCATATATGATGTTTGCGA+CGG | + | tig0018513:30010-30029 | Msa1367340:intron | 35.0% | |
| CCTTTGAATCTGTTCCAAAA+TGG | - | tig0018513:30056-30075 | None:intergenic | 35.0% | |
| !!! | CCATTTTGGAACAGATTCAA+AGG | + | tig0018513:30053-30072 | Msa1367340:intron | 35.0% |
| !! | TCTCGTCACAACTCATTTTT+GGG | - | tig0018513:30194-30213 | None:intergenic | 35.0% |
| ! | ATCTCGTCACAACTCATTTT+TGG | - | tig0018513:30195-30214 | None:intergenic | 35.0% |
| TACAAGACAAAAGGGACTTT+GGG | - | tig0018513:30248-30267 | None:intergenic | 35.0% | |
| AGTATCATGTTGCAGTTAGA+AGG | + | tig0018513:30463-30482 | Msa1367340:CDS | 35.0% | |
| AGTGTAGAAGATGAGCTTAA+AGG | - | tig0018513:30529-30548 | None:intergenic | 35.0% | |
| TACCTATGCAAATTGTTACC+TGG | + | tig0018513:30647-30666 | Msa1367340:three_prime_UTR | 35.0% | |
| ATCCAGGTAACAATTTGCAT+AGG | - | tig0018513:30652-30671 | None:intergenic | 35.0% | |
| GAACAAGAATCAGCAGTAGA+TGG | + | tig0018513:26143-26162 | Msa1367340:exon | 40.0% | |
| AGTAGATGGAAAACCAGAAG+AGG | + | tig0018513:26157-26176 | Msa1367340:exon | 40.0% | |
| ATGGAAAACCAGAAGAGGAA+CGG | + | tig0018513:26162-26181 | Msa1367340:CDS | 40.0% | |
| ! | TCTTGATGGCTCCAACATTA+TGG | + | tig0018513:26200-26219 | Msa1367340:CDS | 40.0% |
| TGGCTCCAACATTATGGAAT+TGG | + | tig0018513:26206-26225 | Msa1367340:CDS | 40.0% | |
| GCAAGGATTCAACAAGTTTG+TGG | + | tig0018513:26239-26258 | Msa1367340:CDS | 40.0% | |
| TAGTAGATGTGATCAGAGTC+AGG | - | tig0018513:26381-26400 | None:intergenic | 40.0% | |
| CTCTGATCACATCTACTATC+AGG | + | tig0018513:26383-26402 | Msa1367340:CDS | 40.0% | |
| CAAAAAGAAAGGGGCTAACT+TGG | - | tig0018513:26669-26688 | None:intergenic | 40.0% | |
| ! | CCCCTTTCTTTTTGTGTATG+TGG | + | tig0018513:26675-26694 | Msa1367340:intron | 40.0% |
| ATTAGGATAGGACACTTCTG+GGG | - | tig0018513:26834-26853 | None:intergenic | 40.0% | |
| ! | ACCAAAAAGCATATTCCCAC+CGG | - | tig0018513:26883-26902 | None:intergenic | 40.0% |
| ! | TTTTCTGCCAATCTCCTTTC+AGG | + | tig0018513:26944-26963 | Msa1367340:intron | 40.0% |
| ! | TACCTTGGAGTGTTTAGTTG+AGG | - | tig0018513:27048-27067 | None:intergenic | 40.0% |
| !! | CTCAAGGATTAGTCTCATAG+CGG | - | tig0018513:27103-27122 | None:intergenic | 40.0% |
| CATTAGTGTGTCTCCCATAT+TGG | + | tig0018513:27148-27167 | Msa1367340:intron | 40.0% | |
| GTAATGATGAACTCAAGGGA+AGG | + | tig0018513:27343-27362 | Msa1367340:intron | 40.0% | |
| TAGTACTTGTGGGTGTGAAA+AGG | + | tig0018513:27401-27420 | Msa1367340:intron | 40.0% | |
| AGGCAAAGGTGGTCTTTAAA+TGG | + | tig0018513:27421-27440 | Msa1367340:intron | 40.0% | |
| TTACCATGTTTGGTAAGGCA+AGG | - | tig0018513:27456-27475 | None:intergenic | 40.0% | |
| CGTCTTTACCATGTTTGGTA+AGG | - | tig0018513:27461-27480 | None:intergenic | 40.0% | |
| TTCATGATGACAGGAAACTG+GGG | - | tig0018513:27572-27591 | None:intergenic | 40.0% | |
| GTTCATGATGACAGGAAACT+GGG | - | tig0018513:27573-27592 | None:intergenic | 40.0% | |
| TTCCTGTCATCATGAACCTA+TGG | + | tig0018513:27576-27595 | Msa1367340:intron | 40.0% | |
| TTCCATAGGTTCATGATGAC+AGG | - | tig0018513:27581-27600 | None:intergenic | 40.0% | |
| ATTAAGACTGGGAAGACGTT+TGG | + | tig0018513:27765-27784 | Msa1367340:intron | 40.0% | |
| TCCCCTAGATAGATATCTCA+TGG | - | tig0018513:27924-27943 | None:intergenic | 40.0% | |
| ! | GGGCATTTGAATGAGCTTTT+TGG | - | tig0018513:28049-28068 | None:intergenic | 40.0% |
| !!! | ATGGGGAAACTTATTTTGCC+TGG | - | tig0018513:28133-28152 | None:intergenic | 40.0% |
| TTATACCTTGGAGTGCGTAA+TGG | - | tig0018513:28239-28258 | None:intergenic | 40.0% | |
| CGCACTCCAAGGTATAATTA+CGG | + | tig0018513:28242-28261 | Msa1367340:intron | 40.0% | |
| !! | CTTGAGGATTAGTCTCATAG+AGG | - | tig0018513:28284-28303 | None:intergenic | 40.0% |
| CTCCAAGTTCAAAGACTAAG+TGG | - | tig0018513:28396-28415 | None:intergenic | 40.0% | |
| GCAGTTAGCACTAGCAATTA+GGG | - | tig0018513:28484-28503 | None:intergenic | 40.0% | |
| AGCAGTTAGCACTAGCAATT+AGG | - | tig0018513:28485-28504 | None:intergenic | 40.0% | |
| ! | ATCTGAAGTTAGTGCTTGTG+TGG | + | tig0018513:28505-28524 | Msa1367340:intron | 40.0% |
| AAGTTAGTGCTTGTGTGGAA+AGG | + | tig0018513:28510-28529 | Msa1367340:intron | 40.0% | |
| TTTCTGCACATGAATATGCC+CGG | + | tig0018513:28963-28982 | Msa1367340:intron | 40.0% | |
| AGTTCCATCAATTATCAGGC+CGG | - | tig0018513:28985-29004 | None:intergenic | 40.0% | |
| CTCAGACATTCTATTAGGCA+TGG | + | tig0018513:29107-29126 | Msa1367340:CDS | 40.0% | |
| CCCAATTGTTATACTCTGCA+TGG | + | tig0018513:29149-29168 | Msa1367340:CDS | 40.0% | |
| TGTTATACTCTGCATGGATG+GGG | + | tig0018513:29155-29174 | Msa1367340:CDS | 40.0% | |
| TTCCTCCTACATCAGATTCT+TGG | + | tig0018513:29316-29335 | Msa1367340:CDS | 40.0% | |
| TCCTCCTACATCAGATTCTT+GGG | + | tig0018513:29317-29336 | Msa1367340:CDS | 40.0% | |
| TAAGTAGAGATAGCGACAAG+AGG | - | tig0018513:29518-29537 | None:intergenic | 40.0% | |
| TCTTGTCGCTATCTCTACTT+AGG | + | tig0018513:29517-29536 | Msa1367340:intron | 40.0% | |
| !! | TGTTGTCTCAAGCTTTGGAT+AGG | + | tig0018513:29567-29586 | Msa1367340:CDS | 40.0% |
| CAATGACAGGCTTCTCTTTA+AGG | - | tig0018513:29658-29677 | None:intergenic | 40.0% | |
| AATTAACAGCTCAGTGGCAA+TGG | - | tig0018513:29773-29792 | None:intergenic | 40.0% | |
| AGACGTTGAACACGACTTTA+GGG | + | tig0018513:29839-29858 | Msa1367340:intron | 40.0% | |
| TCCGTCGCAAACATCATATA+TGG | - | tig0018513:30014-30033 | None:intergenic | 40.0% | |
| CACTAGAAGACACAGAGTTT+GGG | - | tig0018513:30109-30128 | None:intergenic | 40.0% | |
| ! | AGTCGCAATATTTGTTGGGA+CGG | - | tig0018513:30147-30166 | None:intergenic | 40.0% |
| CTACAAGACAAAAGGGACTT+TGG | - | tig0018513:30249-30268 | None:intergenic | 40.0% | |
| ! | TCCCTTTTGTCTTGTAGTGA+CGG | + | tig0018513:30252-30271 | Msa1367340:intron | 40.0% |
| TGCATAACCGATTAACGACA+TGG | + | tig0018513:30593-30612 | Msa1367340:three_prime_UTR | 40.0% | |
| ! | TTTCTTCTGGGAACCACATG+TGG | + | tig0018513:26055-26074 | Msa1367340:five_prime_UTR | 45.0% |
| ! | TTCTTCTGGGAACCACATGT+GGG | + | tig0018513:26056-26075 | Msa1367340:five_prime_UTR | 45.0% |
| GAATTGGTTGGAAACGAGCA+AGG | + | tig0018513:26222-26241 | Msa1367340:CDS | 45.0% | |
| GGACCACAAATTTCATGAGC+TGG | + | tig0018513:26260-26279 | Msa1367340:CDS | 45.0% | |
| AGATGGTAAGCTCTCCTTGA+AGG | + | tig0018513:26293-26312 | Msa1367340:CDS | 45.0% | |
| ! | TCCGGTGGGAATATGCTTTT+TGG | + | tig0018513:26879-26898 | Msa1367340:intron | 45.0% |
| GATTCTGCCTGAAAGGAGAT+TGG | - | tig0018513:26954-26973 | None:intergenic | 45.0% | |
| ATCTCCTTTCAGGCAGAATC+TGG | + | tig0018513:26954-26973 | Msa1367340:intron | 45.0% | |
| GACCTCAACTAAACACTCCA+AGG | + | tig0018513:27043-27062 | Msa1367340:intron | 45.0% | |
| ! | AAGGTATTCCCAGTTTCCCA+CGG | + | tig0018513:27062-27081 | Msa1367340:intron | 45.0% |
| ACTAATCCTTGAGTCTGCAG+CGG | + | tig0018513:27110-27129 | Msa1367340:intron | 45.0% | |
| TAAACGGCATGAACCGTCAA+TGG | - | tig0018513:27214-27233 | None:intergenic | 45.0% | |
| TTGTGGGTGTGAAAAGGCAA+AGG | + | tig0018513:27407-27426 | Msa1367340:intron | 45.0% | |
| TGTTTGGTAAGGCAAGGCAA+AGG | - | tig0018513:27450-27469 | None:intergenic | 45.0% | |
| TTGCCTTGCCTTACCAAACA+TGG | + | tig0018513:27450-27469 | Msa1367340:intron | 45.0% | |
| TCATGATGACAGGAAACTGG+GGG | - | tig0018513:27571-27590 | None:intergenic | 45.0% | |
| GGTTCATGATGACAGGAAAC+TGG | - | tig0018513:27574-27593 | None:intergenic | 45.0% | |
| GTTCCATCAATTATCAGGCC+GGG | - | tig0018513:28984-29003 | None:intergenic | 45.0% | |
| GGCCTGATAATTGATGGAAC+TGG | + | tig0018513:28984-29003 | Msa1367340:intron | 45.0% | |
| GAGCAAGAGTGAGTTCAAAG+AGG | + | tig0018513:29080-29099 | Msa1367340:CDS | 45.0% | |
| ATTCTATTAGGCATGGCTGC+TGG | + | tig0018513:29114-29133 | Msa1367340:CDS | 45.0% | |
| ACCCAAGAATCTGATGTAGG+AGG | - | tig0018513:29321-29340 | None:intergenic | 45.0% | |
| AAAGCTTGAGACAACAGTGC+CGG | - | tig0018513:29563-29582 | None:intergenic | 45.0% | |
| ! | CAAGAAAGTGGCATTGAGTG+TGG | + | tig0018513:29625-29644 | Msa1367340:CDS | 45.0% |
| TCACTGTGAGCTACAATGAC+AGG | - | tig0018513:29671-29690 | None:intergenic | 45.0% | |
| ACGTCTGCATACAAGAGAGT+AGG | - | tig0018513:29825-29844 | None:intergenic | 45.0% | |
| CAGACGTTGAACACGACTTT+AGG | + | tig0018513:29838-29857 | Msa1367340:intron | 45.0% | |
| TCTTCAATTGCACCAACTGG+AGG | - | tig0018513:29949-29968 | None:intergenic | 45.0% | |
| ! | TCCAGTTGGTGCAATTGAAG+AGG | + | tig0018513:29948-29967 | Msa1367340:CDS | 45.0% |
| ACCTCTTCAATTGCACCAAC+TGG | - | tig0018513:29952-29971 | None:intergenic | 45.0% | |
| CCACTAGAAGACACAGAGTT+TGG | - | tig0018513:30110-30129 | None:intergenic | 45.0% | |
| CCAAACTCTGTGTCTTCTAG+TGG | + | tig0018513:30107-30126 | Msa1367340:intron | 45.0% | |
| ! | AGACAAAAGGGACTTTGGGA+CGG | - | tig0018513:30244-30263 | None:intergenic | 45.0% |
| CCCGTCACTACAAGACAAAA+GGG | - | tig0018513:30256-30275 | None:intergenic | 45.0% | |
| ! | CCCTTTTGTCTTGTAGTGAC+GGG | + | tig0018513:30253-30272 | Msa1367340:intron | 45.0% |
| ACCCGTCACTACAAGACAAA+AGG | - | tig0018513:30257-30276 | None:intergenic | 45.0% | |
| TAACCGATTAACGACATGGC+TGG | + | tig0018513:30597-30616 | Msa1367340:three_prime_UTR | 45.0% | |
| TGACCAGCCATGTCGTTAAT+CGG | - | tig0018513:30603-30622 | None:intergenic | 45.0% | |
| ! | TCTTCTGGGAACCACATGTG+GGG | + | tig0018513:26057-26076 | Msa1367340:five_prime_UTR | 50.0% |
| GTTAAGTGTGTCCCCACATG+TGG | - | tig0018513:26071-26090 | None:intergenic | 50.0% | |
| GAAAACCAGAAGAGGAACGG+AGG | + | tig0018513:26165-26184 | Msa1367340:CDS | 50.0% | |
| GAGCTGGATAAGGACAGAGA+TGG | + | tig0018513:26276-26295 | Msa1367340:CDS | 50.0% | |
| AGAAAGGGGCTAACTTGGTC+AGG | - | tig0018513:26664-26683 | None:intergenic | 50.0% | |
| CCATGATAACATGGTCGGTC+CGG | + | tig0018513:26861-26880 | Msa1367340:intron | 50.0% | |
| GTCACCAGATTCTGCCTGAA+AGG | - | tig0018513:26961-26980 | None:intergenic | 50.0% | |
| GTGGGAAACTGGGAATACCT+TGG | - | tig0018513:27063-27082 | None:intergenic | 50.0% | |
| TAGTCTCATAGCGGCCCAAA+GGG | - | tig0018513:27094-27113 | None:intergenic | 50.0% | |
| TTAGTCTCATAGCGGCCCAA+AGG | - | tig0018513:27095-27114 | None:intergenic | 50.0% | |
| TGGGTGTGAAAAGGCAAAGG+TGG | + | tig0018513:27410-27429 | Msa1367340:intron | 50.0% | |
| AAGAACGCAGCAAGTGTACC+AGG | + | tig0018513:28112-28131 | Msa1367340:intron | 50.0% | |
| GACATCCATTACGCACTCCA+AGG | + | tig0018513:28231-28250 | Msa1367340:intron | 50.0% | |
| ACTAATCCTCAAGTCGGCAG+CGG | + | tig0018513:28291-28310 | Msa1367340:intron | 50.0% | |
| ATGCCCGGCCTGATAATTGA+TGG | + | tig0018513:28978-28997 | Msa1367340:intron | 50.0% | |
| GGAAGACTCGATGTTGATCG+AGG | + | tig0018513:29291-29310 | Msa1367340:CDS | 50.0% | |
| GGCACTGTTGTCTCAAGCTT+TGG | + | tig0018513:29562-29581 | Msa1367340:CDS | 50.0% | |
| CTTGCAGGTGACACTAGATG+TGG | + | tig0018513:29903-29922 | Msa1367340:CDS | 50.0% | |
| ACTGGAGGTAAACCAGCAGA+TGG | - | tig0018513:29934-29953 | None:intergenic | 50.0% | |
| !! | TCTGCTGGTTTACCTCCAGT+TGG | + | tig0018513:29934-29953 | Msa1367340:CDS | 50.0% |
| AACCAGAAGAGGAACGGAGG+AGG | + | tig0018513:26168-26187 | Msa1367340:CDS | 55.0% | |
| GGAGGAGGAGAGGTTCTTGA+TGG | + | tig0018513:26186-26205 | Msa1367340:CDS | 55.0% | |
| !! | AGCACCGATGTCAGCAACAG+CGG | - | tig0018513:26328-26347 | None:intergenic | 55.0% |
| !! | TGCTCTTGGTTTGCCTGCTC+AGG | + | tig0018513:26347-26366 | Msa1367340:CDS | 55.0% |
| !! | GCTCTTGGTTTGCCTGCTCA+GGG | + | tig0018513:26348-26367 | Msa1367340:CDS | 55.0% |
| CCGGACCGACCATGTTATCA+TGG | - | tig0018513:26864-26883 | None:intergenic | 55.0% | |
| TGATAACATGGTCGGTCCGG+TGG | + | tig0018513:26864-26883 | Msa1367340:intron | 55.0% | |
| GATAACATGGTCGGTCCGGT+GGG | + | tig0018513:26865-26884 | Msa1367340:intron | 55.0% | |
| GGTCTAAGCCGTGGGAAACT+GGG | - | tig0018513:27073-27092 | None:intergenic | 55.0% | |
| TTCCCACGGCTTAGACCCTT+TGG | + | tig0018513:27076-27095 | Msa1367340:intron | 55.0% | |
| TCCCACGGCTTAGACCCTTT+GGG | + | tig0018513:27077-27096 | Msa1367340:intron | 55.0% | |
| GATGTTCCGCTGCAGACTCA+AGG | - | tig0018513:27119-27138 | None:intergenic | 55.0% | |
| TGAGTCTGCAGCGGAACATC+CGG | + | tig0018513:27119-27138 | Msa1367340:intron | 55.0% | |
| CTAATCCTCAAGTCGGCAGC+GGG | + | tig0018513:28292-28311 | Msa1367340:intron | 55.0% | |
| AACAGCTCAGTGGCAATGGC+AGG | - | tig0018513:29769-29788 | None:intergenic | 55.0% | |
| GATGTGGTGTCTCCATCTGC+TGG | + | tig0018513:29919-29938 | Msa1367340:CDS | 55.0% | |
| CTCCTCCTCCGTTCCTCTTC+TGG | - | tig0018513:26173-26192 | None:intergenic | 60.0% | |
| CAGAAGAGGAACGGAGGAGG+AGG | + | tig0018513:26171-26190 | Msa1367340:CDS | 60.0% | |
| ! | AGCGGGCTCAAGCTCCTTCA+AGG | - | tig0018513:26310-26329 | None:intergenic | 60.0% |
| GAGCCCGCTGTTGCTGACAT+CGG | + | tig0018513:26321-26340 | Msa1367340:CDS | 60.0% | |
| ! | GCACCGATGTCAGCAACAGC+GGG | - | tig0018513:26327-26346 | None:intergenic | 60.0% |
| !! | GCTGACATCGGTGCTGCTCT+TGG | + | tig0018513:26333-26352 | Msa1367340:CDS | 60.0% |
| TCAGGAGTAGTGCCCTGAGC+AGG | - | tig0018513:26363-26382 | None:intergenic | 60.0% | |
| GGGTCTAAGCCGTGGGAAAC+TGG | - | tig0018513:27074-27093 | None:intergenic | 60.0% | |
| GCCCAAAGGGTCTAAGCCGT+GGG | - | tig0018513:27081-27100 | None:intergenic | 60.0% | |
| GAGGAACGGAGGAGGAGGAG+AGG | + | tig0018513:26176-26195 | Msa1367340:CDS | 65.0% | |
| GGCCCAAAGGGTCTAAGCCG+TGG | - | tig0018513:27082-27101 | None:intergenic | 65.0% | |
| !! | GATGTCCCGCTGCCGACTTG+AGG | - | tig0018513:28300-28319 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018513 | gene | 26018 | 30748 | 26018 | ID=Msa1367340;Name=Msa1367340 |
| tig0018513 | mRNA | 26018 | 30748 | 26018 | ID=Msa1367340-mRNA-1;Parent=Msa1367340;Name=Msa1367340-mRNA-1;_AED=0.12;_eAED=0.12;_QI=144|1|1|1|1|1|5|184|363 |
| tig0018513 | exon | 26018 | 26404 | 26018 | ID=Msa1367340-mRNA-1:exon:15507;Parent=Msa1367340-mRNA-1 |
| tig0018513 | exon | 29042 | 29338 | 29042 | ID=Msa1367340-mRNA-1:exon:15508;Parent=Msa1367340-mRNA-1 |
| tig0018513 | exon | 29539 | 29751 | 29539 | ID=Msa1367340-mRNA-1:exon:15509;Parent=Msa1367340-mRNA-1 |
| tig0018513 | exon | 29841 | 29969 | 29841 | ID=Msa1367340-mRNA-1:exon:15510;Parent=Msa1367340-mRNA-1 |
| tig0018513 | exon | 30355 | 30748 | 30355 | ID=Msa1367340-mRNA-1:exon:15511;Parent=Msa1367340-mRNA-1 |
| tig0018513 | five_prime_UTR | 26018 | 26161 | 26018 | ID=Msa1367340-mRNA-1:five_prime_utr;Parent=Msa1367340-mRNA-1 |
| tig0018513 | CDS | 26162 | 26404 | 26162 | ID=Msa1367340-mRNA-1:cds;Parent=Msa1367340-mRNA-1 |
| tig0018513 | CDS | 29042 | 29338 | 29042 | ID=Msa1367340-mRNA-1:cds;Parent=Msa1367340-mRNA-1 |
| tig0018513 | CDS | 29539 | 29751 | 29539 | ID=Msa1367340-mRNA-1:cds;Parent=Msa1367340-mRNA-1 |
| tig0018513 | CDS | 29841 | 29969 | 29841 | ID=Msa1367340-mRNA-1:cds;Parent=Msa1367340-mRNA-1 |
| tig0018513 | CDS | 30355 | 30564 | 30355 | ID=Msa1367340-mRNA-1:cds;Parent=Msa1367340-mRNA-1 |
| tig0018513 | three_prime_UTR | 30565 | 30748 | 30565 | ID=Msa1367340-mRNA-1:three_prime_utr;Parent=Msa1367340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
