Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524160 | XP_003604022.1 | 97.521 | 363 | 8 | 1 | 1 | 363 | 1 | 362 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524160 | G7J7U7 | 97.521 | 363 | 8 | 1 | 1 | 363 | 1 | 362 | 0.0 | 710 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0380240 | Msa0524160 | 0.857141 | 1.998133e-62 | -8.615850e-47 |
| Msa0505370 | Msa0524160 | 0.806073 | 9.816715e-50 | -8.615850e-47 |
| Msa0524160 | Msa0654540 | 0.801285 | 9.677439e-49 | -8.615850e-47 |
| Msa0524160 | Msa0906370 | 0.803098 | 4.100327e-49 | -8.615850e-47 |
| Msa0524160 | Msa1055260 | 0.802165 | 6.386721e-49 | -8.615850e-47 |
| Msa0524160 | Msa1365090 | 0.939906 | 5.771276e-100 | -8.615850e-47 |
| Msa0524160 | Msa1367340 | 0.944129 | 3.430678e-103 | -8.615850e-47 |
| Msa0524160 | Msa1443080 | 0.973529 | 1.392476e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524160 | MtrunA17_Chr3g0145431 | 97.521 | 363 | 8 | 1 | 1 | 363 | 1 | 362 | 0.0 | 710 |
| Msa0524160 | MtrunA17_Chr4g0038631 | 73.569 | 367 | 87 | 4 | 4 | 363 | 7 | 370 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524160 | AT4G38810.2 | 64.407 | 354 | 117 | 4 | 12 | 359 | 13 | 363 | 3.74e-161 | 456 |
| Msa0524160 | AT4G38810.1 | 58.984 | 256 | 96 | 4 | 110 | 359 | 1 | 253 | 3.54e-100 | 297 |
| Msa0524160 | AT5G28830.1 | 23.102 | 303 | 205 | 8 | 54 | 346 | 39 | 323 | 1.15e-11 | 65.5 |
Find 95 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGACAGGCTTCTCTTTA+AGG | 0.119543 | 3_4:-77663852 | None:intergenic |
| TTCATTATTCACCGTCTTAA+AGG | 0.134887 | 3_4:-77664574 | None:intergenic |
| CTCCTCCTCCGTTCCTCTTC+TGG | 0.176059 | 3_4:-77660391 | None:intergenic |
| TGCTCTTGGTTTGCCTGCTC+AGG | 0.235368 | 3_4:+77660568 | Msa0524160:CDS |
| CAGACGTTGAACACGACTTT+AGG | 0.248256 | 3_4:+77664035 | Msa0524160:intron |
| TCTTGATGGCTCCAACATTA+TGG | 0.250150 | 3_4:+77660421 | Msa0524160:CDS |
| ATAGGAGTATGACTTTCTTC+TGG | 0.267860 | 3_4:+77660263 | Msa0524160:five_prime_UTR |
| TTCCTCCTACATCAGATTCT+TGG | 0.291211 | 3_4:+77663513 | Msa0524160:CDS |
| TCAACTCAACAATATTATTA+TGG | 0.334349 | 3_4:-77660313 | None:intergenic |
| GATATAATTGACATTTATAT+AGG | 0.343891 | 3_4:+77660245 | Msa0524160:five_prime_UTR |
| GGCACTGTTGTCTCAAGCTT+TGG | 0.358693 | 3_4:+77663759 | Msa0524160:CDS |
| GAACTTGTTATTGAAGCTTT+TGG | 0.363865 | 3_4:+77663467 | Msa0524160:CDS |
| TGACCAGCCATGTCGTTAAT+CGG | 0.385714 | 3_4:-77664797 | None:intergenic |
| ACCTCTTCAATTGCACCAAC+TGG | 0.390172 | 3_4:-77664146 | None:intergenic |
| GTTCTCTCAGACATTCTATT+AGG | 0.394979 | 3_4:+77663299 | Msa0524160:CDS |
| AATATCAAAGGATTACTTGC+AGG | 0.400730 | 3_4:+77664085 | Msa0524160:CDS |
| TCCTCCTACATCAGATTCTT+GGG | 0.401019 | 3_4:+77663514 | Msa0524160:CDS |
| CTGATTCTTGTTCTTTCTTG+TGG | 0.405119 | 3_4:-77660354 | None:intergenic |
| AATGTCTCTTGATCTCTAAC+AGG | 0.406167 | 3_4:-77663787 | None:intergenic |
| CTCTGATCACATCTACTATC+AGG | 0.408189 | 3_4:+77660604 | Msa0524160:CDS |
| GAACAAGAATCAGCAGTAGA+TGG | 0.411220 | 3_4:+77660364 | Msa0524160:exon |
| AGACGTTGAACACGACTTTA+GGG | 0.414927 | 3_4:+77664036 | Msa0524160:intron |
| GCTCTTGGTTTGCCTGCTCA+GGG | 0.416449 | 3_4:+77660569 | Msa0524160:CDS |
| AGTGTAGAAGATGAGCTTAA+AGG | 0.417154 | 3_4:-77664723 | None:intergenic |
| TGGCTCCAACATTATGGAAT+TGG | 0.417894 | 3_4:+77660427 | Msa0524160:CDS |
| GATCTTCTTGAGTTTGTTAA+CGG | 0.419045 | 3_4:+77663377 | Msa0524160:CDS |
| GCTGACATCGGTGCTGCTCT+TGG | 0.421869 | 3_4:+77660554 | Msa0524160:CDS |
| TAGGAGTATGACTTTCTTCT+GGG | 0.425834 | 3_4:+77660264 | Msa0524160:five_prime_UTR |
| AGTATCATGTTGCAGTTAGA+AGG | 0.429901 | 3_4:+77664660 | Msa0524160:CDS |
| CAACAAGTTTGAATTAGAAA+AGG | 0.439922 | 3_4:+77663927 | Msa0524160:CDS |
| TATCCAGCTCATGAAATTTG+TGG | 0.442680 | 3_4:-77660484 | None:intergenic |
| GAACAAGAATAATATTAAGA+TGG | 0.443655 | 3_4:-77664753 | None:intergenic |
| TCCAACCAATTCCATAATGT+TGG | 0.447482 | 3_4:-77660432 | None:intergenic |
| TCCATGCAGAGTATAACAAT+TGG | 0.453037 | 3_4:-77663347 | None:intergenic |
| CTTGTGGTTTATTTGACTGA+GGG | 0.459556 | 3_4:-77660338 | None:intergenic |
| TTTGGAAGAATTCAAGAAAG+TGG | 0.460032 | 3_4:+77663810 | Msa0524160:CDS |
| CAGAAGAGGAACGGAGGAGG+AGG | 0.464641 | 3_4:+77660392 | Msa0524160:CDS |
| GTCATTTCTGTATAATAACT+TGG | 0.474803 | 3_4:-77663401 | None:intergenic |
| CAAATTTCATGAGCTGGATA+AGG | 0.483471 | 3_4:+77660487 | Msa0524160:CDS |
| AGCGGGCTCAAGCTCCTTCA+AGG | 0.483560 | 3_4:-77660528 | None:intergenic |
| GGAGGAGGAGAGGTTCTTGA+TGG | 0.487880 | 3_4:+77660407 | Msa0524160:CDS |
| TAGTAGATGTGATCAGAGTC+AGG | 0.489937 | 3_4:-77660599 | None:intergenic |
| GCAAGGATTCAACAAGTTTG+TGG | 0.490981 | 3_4:+77660460 | Msa0524160:CDS |
| TTGTTATACTCTGCATGGAT+GGG | 0.494421 | 3_4:+77663351 | Msa0524160:CDS |
| GGACCACAAATTTCATGAGC+TGG | 0.499403 | 3_4:+77660481 | Msa0524160:CDS |
| TGTTGTCTCAAGCTTTGGAT+AGG | 0.500092 | 3_4:+77663764 | Msa0524160:CDS |
| CGAGAAATTAAATATGATCC+AGG | 0.503924 | 3_4:-77664866 | None:intergenic |
| TTTCTTCTGGGAACCACATG+TGG | 0.504678 | 3_4:+77660276 | Msa0524160:five_prime_UTR |
| TCAGGAGTAGTGCCCTGAGC+AGG | 0.508149 | 3_4:-77660581 | None:intergenic |
| ATTCTATTAGGCATGGCTGC+TGG | 0.509238 | 3_4:+77663311 | Msa0524160:CDS |
| GCACCGATGTCAGCAACAGC+GGG | 0.511448 | 3_4:-77660545 | None:intergenic |
| TACCTATGCAAATTGTTACC+TGG | 0.513205 | 3_4:+77664848 | Msa0524160:three_prime_UTR |
| AACCAGAAGAGGAACGGAGG+AGG | 0.517853 | 3_4:+77660389 | Msa0524160:CDS |
| TCACTGTGAGCTACAATGAC+AGG | 0.521245 | 3_4:-77663865 | None:intergenic |
| ATTGTTATACTCTGCATGGA+TGG | 0.521997 | 3_4:+77663350 | Msa0524160:CDS |
| AACAAGAATAATATTAAGAT+GGG | 0.524551 | 3_4:-77664752 | None:intergenic |
| TCTTGTGGTTTATTTGACTG+AGG | 0.524629 | 3_4:-77660339 | None:intergenic |
| CCATGCAGAGTATAACAATT+GGG | 0.524748 | 3_4:-77663346 | None:intergenic |
| TCTGCTGGTTTACCTCCAGT+TGG | 0.524964 | 3_4:+77664131 | Msa0524160:CDS |
| CTCAGACATTCTATTAGGCA+TGG | 0.528189 | 3_4:+77663304 | Msa0524160:CDS |
| GATGTGGTGTCTCCATCTGC+TGG | 0.529207 | 3_4:+77664116 | Msa0524160:CDS |
| GAGCCCGCTGTTGCTGACAT+CGG | 0.531602 | 3_4:+77660542 | Msa0524160:CDS |
| AGATGGTAAACTCTCCTTGA+AGG | 0.538224 | 3_4:+77660514 | Msa0524160:CDS |
| CCCAATTGTTATACTCTGCA+TGG | 0.539018 | 3_4:+77663346 | Msa0524160:CDS |
| AAGCTTCAATAACAAGTTCG+CGG | 0.551585 | 3_4:-77663463 | None:intergenic |
| GAATTTGAAGAAACAGCAAT+GGG | 0.554960 | 3_4:-77664687 | None:intergenic |
| GTGTTGAATGAATTCACTCA+TGG | 0.557877 | 3_4:+77663239 | Msa0524160:CDS |
| TCCAACATTATGGAATTGGT+TGG | 0.565142 | 3_4:+77660431 | Msa0524160:CDS |
| TGTTATACTCTGCATGGATG+GGG | 0.565150 | 3_4:+77663352 | Msa0524160:CDS |
| GAGGAACGGAGGAGGAGGAG+AGG | 0.567465 | 3_4:+77660397 | Msa0524160:CDS |
| TTCTTCTGGGAACCACATGT+GGG | 0.569452 | 3_4:+77660277 | Msa0524160:five_prime_UTR |
| TAACCGATTAACGACATGGC+TGG | 0.572052 | 3_4:+77664794 | Msa0524160:three_prime_UTR |
| TGAATTTGAAGAAACAGCAA+TGG | 0.575925 | 3_4:-77664688 | None:intergenic |
| AGCACCGATGTCAGCAACAG+CGG | 0.580542 | 3_4:-77660546 | None:intergenic |
| ATTACCCAAGAATCTGATGT+AGG | 0.586136 | 3_4:-77663518 | None:intergenic |
| GAATTGGTTGGAAACGAGCA+AGG | 0.589020 | 3_4:+77660443 | Msa0524160:CDS |
| TATTAGTGAAGCCTTTAAGA+CGG | 0.589119 | 3_4:+77664563 | Msa0524160:CDS |
| AAAGCTTGAGACAACAGTGC+CGG | 0.602253 | 3_4:-77663757 | None:intergenic |
| GGAAGACTCGATGTTGATCG+AGG | 0.609171 | 3_4:+77663488 | Msa0524160:CDS |
| TCCAGTTGGTGCAATTGAAG+AGG | 0.610698 | 3_4:+77664145 | Msa0524160:CDS |
| ACTGGAGGTAAACCAGCAGA+TGG | 0.614242 | 3_4:-77664128 | None:intergenic |
| ACCCAAGAATCTGATGTAGG+AGG | 0.614585 | 3_4:-77663515 | None:intergenic |
| AGTAGATGGAAAACCAGAAG+AGG | 0.616094 | 3_4:+77660378 | Msa0524160:exon |
| GTTAAGTGTGTCCCCACATG+TGG | 0.623821 | 3_4:-77660289 | None:intergenic |
| TGCATAACCGATTAACGACA+TGG | 0.635170 | 3_4:+77664790 | Msa0524160:three_prime_UTR |
| TCTTCTGGGAACCACATGTG+GGG | 0.637419 | 3_4:+77660278 | Msa0524160:five_prime_UTR |
| CAAGAAAGTGGCATTGAGTG+TGG | 0.640256 | 3_4:+77663822 | Msa0524160:CDS |
| ATGGAAAACCAGAAGAGGAA+CGG | 0.642985 | 3_4:+77660383 | Msa0524160:CDS |
| TCTTCAATTGCACCAACTGG+AGG | 0.650559 | 3_4:-77664143 | None:intergenic |
| GAGCAAGAGTGAGTTCAAAG+AGG | 0.651775 | 3_4:+77663277 | Msa0524160:CDS |
| ATCCAGGTAACAATTTGCAT+AGG | 0.662558 | 3_4:-77664850 | None:intergenic |
| AATCTGCCAAAAGATCGAAA+CGG | 0.663483 | 3_4:+77664059 | Msa0524160:CDS |
| GAAAACCAGAAGAGGAACGG+AGG | 0.663724 | 3_4:+77660386 | Msa0524160:CDS |
| GAGCTGGATAAGGACAGAGA+TGG | 0.674340 | 3_4:+77660497 | Msa0524160:CDS |
| CTTGCAGGTGACACTAGATG+TGG | 0.729256 | 3_4:+77664100 | Msa0524160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATTTATCAATGTAT+TGG | + | chr3_4:77660803-77660822 | Msa0524160:intron | 10.0% |
| !! | CAAAAATATAAATAATCTTA+AGG | - | chr3_4:77663051-77663070 | None:intergenic | 10.0% |
| !!! | AAAATTTTAATTGAAATACT+GGG | + | chr3_4:77664636-77664655 | Msa0524160:CDS | 10.0% |
| !! | ATAAAAATAAATATTGTACT+TGG | - | chr3_4:77664827-77664846 | None:intergenic | 10.0% |
| !! | GATATAATTGACATTTATAT+AGG | + | chr3_4:77660245-77660264 | Msa0524160:five_prime_UTR | 15.0% |
| !! | ATTACATAATAAAAAGAGAA+AGG | - | chr3_4:77660637-77660656 | None:intergenic | 15.0% |
| !! | AACATATATATTACCAATAT+GGG | - | chr3_4:77661391-77661410 | None:intergenic | 15.0% |
| !! | AAACATATATATTACCAATA+TGG | - | chr3_4:77661392-77661411 | None:intergenic | 15.0% |
| !! | CAGAAATATAATTAATCTTA+GGG | - | chr3_4:77661904-77661923 | None:intergenic | 15.0% |
| !! | ACAGAAATATAATTAATCTT+AGG | - | chr3_4:77661905-77661924 | None:intergenic | 15.0% |
| !!! | AATTTCTAAAAATTAAGACT+GGG | + | chr3_4:77661981-77662000 | Msa0524160:intron | 15.0% |
| !! | TTTATTATTCAACTCAAAAT+GGG | - | chr3_4:77662348-77662367 | None:intergenic | 15.0% |
| !! | ATTTATTATTCAACTCAAAA+TGG | - | chr3_4:77662349-77662368 | None:intergenic | 15.0% |
| !!! | ACTTTGATATATTTTATTTG+TGG | + | chr3_4:77663991-77664010 | Msa0524160:intron | 15.0% |
| !!! | GAAAATTTTAATTGAAATAC+TGG | + | chr3_4:77664635-77664654 | Msa0524160:CDS | 15.0% |
| !!! | AAATTTTAATTGAAATACTG+GGG | + | chr3_4:77664637-77664656 | Msa0524160:CDS | 15.0% |
| !! | AACAAGAATAATATTAAGAT+GGG | - | chr3_4:77664755-77664774 | None:intergenic | 15.0% |
| !! | TCAACTCAACAATATTATTA+TGG | - | chr3_4:77660316-77660335 | None:intergenic | 20.0% |
| !! | GTTATCATGGATAATTAATT+AGG | - | chr3_4:77661076-77661095 | None:intergenic | 20.0% |
| !! | ATTAATTATCCATGATAACA+TGG | + | chr3_4:77661077-77661096 | Msa0524160:intron | 20.0% |
| !! | GTGATATAAACTTATAAAGT+TGG | + | chr3_4:77661529-77661548 | Msa0524160:intron | 20.0% |
| !!! | ATTTTCCGTATAAATGATAT+AGG | + | chr3_4:77661860-77661879 | Msa0524160:intron | 20.0% |
| !! | GATAACCTATATCATTTATA+CGG | - | chr3_4:77661868-77661887 | None:intergenic | 20.0% |
| !!! | CAATTTCTAAAAATTAAGAC+TGG | + | chr3_4:77661980-77661999 | Msa0524160:intron | 20.0% |
| !! | TCTGAATATGTATGTTAAAA+TGG | + | chr3_4:77662073-77662092 | Msa0524160:intron | 20.0% |
| !! | TTATTATTCAACTCAAAATG+GGG | - | chr3_4:77662347-77662366 | None:intergenic | 20.0% |
| !! | TTATTAGAGTGATAAAAAGT+TGG | + | chr3_4:77662622-77662641 | Msa0524160:intron | 20.0% |
| !! | TAACCAAATATGGTAAATAT+GGG | + | chr3_4:77662782-77662801 | Msa0524160:intron | 20.0% |
| !! | ATGATTATATATCAATGATG+TGG | + | chr3_4:77662858-77662877 | Msa0524160:intron | 20.0% |
| !! | ATCTTAAGGAAAACAATATA+CGG | - | chr3_4:77663037-77663056 | None:intergenic | 20.0% |
| !! | TATTGATCTTGAAAATACAA+TGG | - | chr3_4:77663095-77663114 | None:intergenic | 20.0% |
| !! | GAACAAGAATAAAAATTTGA+TGG | + | chr3_4:77663203-77663222 | Msa0524160:intron | 20.0% |
| !! | GAACAAGAATAATATTAAGA+TGG | - | chr3_4:77664756-77664775 | None:intergenic | 20.0% |
| ! | AGCTTAAAGAAAAAACACAA+AGG | - | chr3_4:77660857-77660876 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTCTTTAAGCTT+TGG | + | chr3_4:77660858-77660877 | Msa0524160:intron | 25.0% |
| !!! | TTTTTCTTTAAGCTTTGGTT+TGG | + | chr3_4:77660863-77660882 | Msa0524160:intron | 25.0% |
| ! | CATGGATAATTAATTAGGAT+AGG | - | chr3_4:77661071-77661090 | None:intergenic | 25.0% |
| ! | ATAAAAAGCAAAATTGAGCA+GGG | - | chr3_4:77661143-77661162 | None:intergenic | 25.0% |
| ! | AATAAAAAGCAAAATTGAGC+AGG | - | chr3_4:77661144-77661163 | None:intergenic | 25.0% |
| ! | GTCATAAATCATAATTACAG+TGG | - | chr3_4:77661253-77661272 | None:intergenic | 25.0% |
| !! | CTTCAAGTTCAAAGATTAAA+CGG | - | chr3_4:77661457-77661476 | None:intergenic | 25.0% |
| ! | TTAATGTAATGATGAACTCA+AGG | + | chr3_4:77661565-77661584 | Msa0524160:intron | 25.0% |
| ! | TAATGTAATGATGAACTCAA+GGG | + | chr3_4:77661566-77661585 | Msa0524160:intron | 25.0% |
| !! | GAAAATCTGATTTGATCAAA+TGG | - | chr3_4:77661846-77661865 | None:intergenic | 25.0% |
| ! | ATCTTAGGGAAAACAATATA+GGG | - | chr3_4:77661890-77661909 | None:intergenic | 25.0% |
| ! | AATCTTAGGGAAAACAATAT+AGG | - | chr3_4:77661891-77661910 | None:intergenic | 25.0% |
| ! | TACTGAATTTGAAAATGCAA+TGG | - | chr3_4:77661952-77661971 | None:intergenic | 25.0% |
| ! | TATGTATGTTAAAATGGATG+TGG | + | chr3_4:77662079-77662098 | Msa0524160:intron | 25.0% |
| ! | TATCTAGGCAAAACATTATA+GGG | - | chr3_4:77662267-77662286 | None:intergenic | 25.0% |
| ! | ATATCTAGGCAAAACATTAT+AGG | - | chr3_4:77662268-77662287 | None:intergenic | 25.0% |
| ! | TACTTTATGCTACAATATCT+AGG | - | chr3_4:77662282-77662301 | None:intergenic | 25.0% |
| ! | AGGCAAAATTGATCTTTAAA+TGG | + | chr3_4:77662727-77662746 | Msa0524160:intron | 25.0% |
| ! | ATCTTTAAATGGAATCCTTT+GGG | + | chr3_4:77662738-77662757 | Msa0524160:intron | 25.0% |
| ! | CATATTTACCATATTTGGTT+AGG | - | chr3_4:77662783-77662802 | None:intergenic | 25.0% |
| ! | CTAACCAAATATGGTAAATA+TGG | + | chr3_4:77662781-77662800 | Msa0524160:intron | 25.0% |
| ! | ATAAAAGATACCTTAGAAAC+AGG | + | chr3_4:77662814-77662833 | Msa0524160:intron | 25.0% |
| ! | TAAAAGATACCTTAGAAACA+GGG | + | chr3_4:77662815-77662834 | Msa0524160:intron | 25.0% |
| !!! | TCATGTGCAGAAATTTTAAT+AGG | - | chr3_4:77663153-77663172 | None:intergenic | 25.0% |
| ! | GTCATTTCTGTATAATAACT+TGG | - | chr3_4:77663404-77663423 | None:intergenic | 25.0% |
| !! | TTAGGTTTTTAACAACATTG+TGG | + | chr3_4:77663732-77663751 | Msa0524160:intron | 25.0% |
| !! | CTTTTCTAATTCAAACTTGT+TGG | - | chr3_4:77663929-77663948 | None:intergenic | 25.0% |
| ! | CAACAAGTTTGAATTAGAAA+AGG | + | chr3_4:77663927-77663946 | Msa0524160:CDS | 25.0% |
| !! | ATATACTGACTAATATGCAT+TGG | - | chr3_4:77664184-77664203 | None:intergenic | 25.0% |
| ! | AATTTAATCAGACATTGTGA+TGG | - | chr3_4:77664279-77664298 | None:intergenic | 25.0% |
| !!! | TTTGATTTTACAGATGGATA+AGG | + | chr3_4:77664539-77664558 | Msa0524160:intron | 25.0% |
| ACCACATACACAAAAAGAAA+GGG | - | chr3_4:77660904-77660923 | None:intergenic | 30.0% | |
| AACCACATACACAAAAAGAA+AGG | - | chr3_4:77660905-77660924 | None:intergenic | 30.0% | |
| ATGTGATACTTTATAGAAGC+TGG | + | chr3_4:77661033-77661052 | Msa0524160:intron | 30.0% | |
| ATTATCCATGATAACATGGT+CGG | + | chr3_4:77661081-77661100 | Msa0524160:intron | 30.0% | |
| AGACACACTAATGAAAAAAC+CGG | - | chr3_4:77661368-77661387 | None:intergenic | 30.0% | |
| AGTATATGCTAAACCATTGA+CGG | + | chr3_4:77661425-77661444 | Msa0524160:intron | 30.0% | |
| TCAGTTAGCACTAGTAATTT+GGG | - | chr3_4:77661598-77661617 | None:intergenic | 30.0% | |
| ATCAGTTAGCACTAGTAATT+TGG | - | chr3_4:77661599-77661618 | None:intergenic | 30.0% | |
| ! | ATATCTGAAGTTAGTACTTG+TGG | + | chr3_4:77661617-77661636 | Msa0524160:intron | 30.0% |
| ! | TATCTGAAGTTAGTACTTGT+GGG | + | chr3_4:77661618-77661637 | Msa0524160:intron | 30.0% |
| GTGCTCAGATAATTGATAAA+TGG | + | chr3_4:77661771-77661790 | Msa0524160:intron | 30.0% | |
| TTTCCATGAGATATCTATCT+AGG | + | chr3_4:77662115-77662134 | Msa0524160:intron | 30.0% | |
| TTCCATGAGATATCTATCTA+GGG | + | chr3_4:77662116-77662135 | Msa0524160:intron | 30.0% | |
| ATCTAGGCAAAACATTATAG+GGG | - | chr3_4:77662266-77662285 | None:intergenic | 30.0% | |
| TTTAAGCCGTAATTATACCT+TGG | - | chr3_4:77662448-77662467 | None:intergenic | 30.0% | |
| TGTCACTCATGTGAAAAAAT+CGG | - | chr3_4:77662519-77662538 | None:intergenic | 30.0% | |
| GATCTTTAAATGGAATCCTT+TGG | + | chr3_4:77662737-77662756 | Msa0524160:intron | 30.0% | |
| GTTCCCATATTTACCATATT+TGG | - | chr3_4:77662788-77662807 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCTCCCTGTTTCTA+AGG | - | chr3_4:77662827-77662846 | None:intergenic | 30.0% |
| AACAGGGAGAAAAAAAATAG+AGG | + | chr3_4:77662831-77662850 | Msa0524160:intron | 30.0% | |
| TTCATGATGACAGTAAACTT+AGG | - | chr3_4:77662904-77662923 | None:intergenic | 30.0% | |
| TACAGATTGTATGATTGCAT+AGG | - | chr3_4:77662927-77662946 | None:intergenic | 30.0% | |
| !! | GGAGAGCTCATATTTTTATT+CGG | - | chr3_4:77663016-77663035 | None:intergenic | 30.0% |
| !! | ATTTGATGGACTTGTTGTAT+AGG | + | chr3_4:77663217-77663236 | Msa0524160:intron | 30.0% |
| !! | GATCTTCTTGAGTTTGTTAA+CGG | + | chr3_4:77663377-77663396 | Msa0524160:CDS | 30.0% |
| !! | GTTTTGAATCTGAGAGAATA+TGG | - | chr3_4:77663429-77663448 | None:intergenic | 30.0% |
| !!! | GAACTTGTTATTGAAGCTTT+TGG | + | chr3_4:77663467-77663486 | Msa0524160:CDS | 30.0% |
| ! | TTTTAACAACATTGTGGATC+CGG | + | chr3_4:77663738-77663757 | Msa0524160:CDS | 30.0% |
| ! | TAGAGATCAAGAGACATTTT+TGG | + | chr3_4:77663792-77663811 | Msa0524160:CDS | 30.0% |
| TTTGGAAGAATTCAAGAAAG+TGG | + | chr3_4:77663810-77663829 | Msa0524160:CDS | 30.0% | |
| ! | ATTTTTCCGTTTCGATCTTT+TGG | - | chr3_4:77664068-77664087 | None:intergenic | 30.0% |
| TCGAAACGGAAAAATATCAA+AGG | + | chr3_4:77664073-77664092 | Msa0524160:CDS | 30.0% | |
| AATATCAAAGGATTACTTGC+AGG | + | chr3_4:77664085-77664104 | Msa0524160:CDS | 30.0% | |
| ! | ATATCAATCTGTCTCCATTT+TGG | + | chr3_4:77664236-77664255 | Msa0524160:intron | 30.0% |
| TTTCAGTCGCAATATTTGTT+GGG | - | chr3_4:77664348-77664367 | None:intergenic | 30.0% | |
| ATTTCAGTCGCAATATTTGT+TGG | - | chr3_4:77664349-77664368 | None:intergenic | 30.0% | |
| !! | GATGTGTTTGATTTTACAGA+TGG | + | chr3_4:77664533-77664552 | Msa0524160:intron | 30.0% |
| ! | TATTAGTGAAGCCTTTAAGA+CGG | + | chr3_4:77664563-77664582 | Msa0524160:CDS | 30.0% |
| TTCATTATTCACCGTCTTAA+AGG | - | chr3_4:77664577-77664596 | None:intergenic | 30.0% | |
| GAATTTGAAGAAACAGCAAT+GGG | - | chr3_4:77664690-77664709 | None:intergenic | 30.0% | |
| TGAATTTGAAGAAACAGCAA+TGG | - | chr3_4:77664691-77664710 | None:intergenic | 30.0% | |
| CGAGAAATTAAATATGATCC+AGG | - | chr3_4:77664869-77664888 | None:intergenic | 30.0% | |
| ! | ATAGGAGTATGACTTTCTTC+TGG | + | chr3_4:77660263-77660282 | Msa0524160:five_prime_UTR | 35.0% |
| ! | TAGGAGTATGACTTTCTTCT+GGG | + | chr3_4:77660264-77660283 | Msa0524160:five_prime_UTR | 35.0% |
| CTTGTGGTTTATTTGACTGA+GGG | - | chr3_4:77660341-77660360 | None:intergenic | 35.0% | |
| TCTTGTGGTTTATTTGACTG+AGG | - | chr3_4:77660342-77660361 | None:intergenic | 35.0% | |
| CTGATTCTTGTTCTTTCTTG+TGG | - | chr3_4:77660357-77660376 | None:intergenic | 35.0% | |
| TCCAACATTATGGAATTGGT+TGG | + | chr3_4:77660431-77660450 | Msa0524160:CDS | 35.0% | |
| TCCAACCAATTCCATAATGT+TGG | - | chr3_4:77660435-77660454 | None:intergenic | 35.0% | |
| TATCCAGCTCATGAAATTTG+TGG | - | chr3_4:77660487-77660506 | None:intergenic | 35.0% | |
| CAAATTTCATGAGCTGGATA+AGG | + | chr3_4:77660487-77660506 | Msa0524160:CDS | 35.0% | |
| !! | GTTGCTCTTCACTTTTGTTT+TGG | + | chr3_4:77660705-77660724 | Msa0524160:intron | 35.0% |
| CCACATACACAAAAAGAAAG+GGG | - | chr3_4:77660903-77660922 | None:intergenic | 35.0% | |
| TTGAAGACGAATTCTGAACT+TGG | + | chr3_4:77660966-77660985 | Msa0524160:intron | 35.0% | |
| AATTAGGATAGGACACTTCT+GGG | - | chr3_4:77661060-77661079 | None:intergenic | 35.0% | |
| TAATTAGGATAGGACACTTC+TGG | - | chr3_4:77661061-77661080 | None:intergenic | 35.0% | |
| AAAGGAGATTGGCAGAAAAA+TGG | - | chr3_4:77661168-77661187 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTTCTTCT+AGG | + | chr3_4:77661221-77661240 | Msa0524160:intron | 35.0% | |
| TAATGATGAACTCAAGGGAA+GGG | + | chr3_4:77661571-77661590 | Msa0524160:intron | 35.0% | |
| TTATGCGTCTTTACCATGTT+TGG | - | chr3_4:77661693-77661712 | None:intergenic | 35.0% | |
| ACATGGTAAAGACGCATAAA+AGG | + | chr3_4:77661694-77661713 | Msa0524160:intron | 35.0% | |
| ! | TTTTTGTCTTTCTGTGGCTA+AGG | - | chr3_4:77661722-77661741 | None:intergenic | 35.0% |
| !!! | CCTCTATTTTTGTCTTTCTG+TGG | - | chr3_4:77661728-77661747 | None:intergenic | 35.0% |
| CCACAGAAAGACAAAAATAG+AGG | + | chr3_4:77661725-77661744 | Msa0524160:intron | 35.0% | |
| TGCAGATTGTATGATTCCAT+AGG | - | chr3_4:77661822-77661841 | None:intergenic | 35.0% | |
| TCCATGAGATATCTATCTAG+GGG | + | chr3_4:77662117-77662136 | Msa0524160:intron | 35.0% | |
| TAGACAAGTGTCTGTTATGA+AGG | + | chr3_4:77662211-77662230 | Msa0524160:intron | 35.0% | |
| AGTCTCATAGAGGATTCAAA+TGG | - | chr3_4:77662471-77662490 | None:intergenic | 35.0% | |
| TATGAGACTAATCCTCAAGT+CGG | + | chr3_4:77662482-77662501 | Msa0524160:intron | 35.0% | |
| TAAGTGGTATGAGTCATCAA+TGG | - | chr3_4:77662577-77662596 | None:intergenic | 35.0% | |
| ! | TACCACTTAGTCTTTGAACT+TGG | + | chr3_4:77662588-77662607 | Msa0524160:intron | 35.0% |
| ACACATTTGCTTTATCCCAA+AGG | - | chr3_4:77662756-77662775 | None:intergenic | 35.0% | |
| GTGTCTTACCTAACCAAATA+TGG | + | chr3_4:77662772-77662791 | Msa0524160:intron | 35.0% | |
| GTGGTCAGATATTTGATGAA+TGG | + | chr3_4:77662877-77662896 | Msa0524160:intron | 35.0% | |
| !!! | GTTGTCTAGTTTTGATCGAA+TGG | - | chr3_4:77662958-77662977 | None:intergenic | 35.0% |
| GGACACGCATAAATTATTGA+AGG | - | chr3_4:77663132-77663151 | None:intergenic | 35.0% | |
| TTCCAGTTCCATCAATTATC+AGG | - | chr3_4:77663186-77663205 | None:intergenic | 35.0% | |
| GTGTTGAATGAATTCACTCA+TGG | + | chr3_4:77663239-77663258 | Msa0524160:CDS | 35.0% | |
| GTTCTCTCAGACATTCTATT+AGG | + | chr3_4:77663299-77663318 | Msa0524160:CDS | 35.0% | |
| CCATGCAGAGTATAACAATT+GGG | - | chr3_4:77663349-77663368 | None:intergenic | 35.0% | |
| TCCATGCAGAGTATAACAAT+TGG | - | chr3_4:77663350-77663369 | None:intergenic | 35.0% | |
| ATTGTTATACTCTGCATGGA+TGG | + | chr3_4:77663350-77663369 | Msa0524160:CDS | 35.0% | |
| TTGTTATACTCTGCATGGAT+GGG | + | chr3_4:77663351-77663370 | Msa0524160:CDS | 35.0% | |
| AAGCTTCAATAACAAGTTCG+CGG | - | chr3_4:77663466-77663485 | None:intergenic | 35.0% | |
| ATTACCCAAGAATCTGATGT+AGG | - | chr3_4:77663521-77663540 | None:intergenic | 35.0% | |
| ACACAACATGTTTCAATGCA+AGG | - | chr3_4:77663572-77663591 | None:intergenic | 35.0% | |
| AATGTCTCTTGATCTCTAAC+AGG | - | chr3_4:77663790-77663809 | None:intergenic | 35.0% | |
| ! | CACAGTGAAAACACTTTTGA+TGG | + | chr3_4:77663880-77663899 | Msa0524160:CDS | 35.0% |
| ! | GAAAACACTTTTGATGGAAG+TGG | + | chr3_4:77663886-77663905 | Msa0524160:CDS | 35.0% |
| AAAGTGAATTAACAGCTCAG+TGG | - | chr3_4:77663976-77663995 | None:intergenic | 35.0% | |
| AATCTGCCAAAAGATCGAAA+CGG | + | chr3_4:77664059-77664078 | Msa0524160:CDS | 35.0% | |
| TCCATATATGATGTTTGCGA+CGG | + | chr3_4:77664207-77664226 | Msa0524160:intron | 35.0% | |
| CCTTTGAATCTGTTCCAAAA+TGG | - | chr3_4:77664253-77664272 | None:intergenic | 35.0% | |
| !!! | CCATTTTGGAACAGATTCAA+AGG | + | chr3_4:77664250-77664269 | Msa0524160:intron | 35.0% |
| !! | TCTCGTCACAACTCATTTTT+GGG | - | chr3_4:77664391-77664410 | None:intergenic | 35.0% |
| ! | ATCTCGTCACAACTCATTTT+TGG | - | chr3_4:77664392-77664411 | None:intergenic | 35.0% |
| TACAAGACAAAAGGGACTTT+GGG | - | chr3_4:77664445-77664464 | None:intergenic | 35.0% | |
| AGTATCATGTTGCAGTTAGA+AGG | + | chr3_4:77664660-77664679 | Msa0524160:CDS | 35.0% | |
| AGTGTAGAAGATGAGCTTAA+AGG | - | chr3_4:77664726-77664745 | None:intergenic | 35.0% | |
| TACCTATGCAAATTGTTACC+TGG | + | chr3_4:77664848-77664867 | Msa0524160:three_prime_UTR | 35.0% | |
| ATCCAGGTAACAATTTGCAT+AGG | - | chr3_4:77664853-77664872 | None:intergenic | 35.0% | |
| GAACAAGAATCAGCAGTAGA+TGG | + | chr3_4:77660364-77660383 | Msa0524160:exon | 40.0% | |
| AGTAGATGGAAAACCAGAAG+AGG | + | chr3_4:77660378-77660397 | Msa0524160:exon | 40.0% | |
| ATGGAAAACCAGAAGAGGAA+CGG | + | chr3_4:77660383-77660402 | Msa0524160:CDS | 40.0% | |
| ! | TCTTGATGGCTCCAACATTA+TGG | + | chr3_4:77660421-77660440 | Msa0524160:CDS | 40.0% |
| TGGCTCCAACATTATGGAAT+TGG | + | chr3_4:77660427-77660446 | Msa0524160:CDS | 40.0% | |
| GCAAGGATTCAACAAGTTTG+TGG | + | chr3_4:77660460-77660479 | Msa0524160:CDS | 40.0% | |
| AGATGGTAAACTCTCCTTGA+AGG | + | chr3_4:77660514-77660533 | Msa0524160:CDS | 40.0% | |
| TAGTAGATGTGATCAGAGTC+AGG | - | chr3_4:77660602-77660621 | None:intergenic | 40.0% | |
| CTCTGATCACATCTACTATC+AGG | + | chr3_4:77660604-77660623 | Msa0524160:CDS | 40.0% | |
| CAAAAAGAAAGGGGCTAACT+TGG | - | chr3_4:77660894-77660913 | None:intergenic | 40.0% | |
| ! | CCCCTTTCTTTTTGTGTATG+TGG | + | chr3_4:77660900-77660919 | Msa0524160:intron | 40.0% |
| ATTAGGATAGGACACTTCTG+GGG | - | chr3_4:77661059-77661078 | None:intergenic | 40.0% | |
| ! | ACCAAAAAGCATATTCCCAC+CGG | - | chr3_4:77661108-77661127 | None:intergenic | 40.0% |
| ! | TTTTCTGCCAATCTCCTTTC+AGG | + | chr3_4:77661169-77661188 | Msa0524160:intron | 40.0% |
| ! | TACCTTGGAGTGTTTAGTTG+AGG | - | chr3_4:77661275-77661294 | None:intergenic | 40.0% |
| !! | CTCAAGGATTAGTCTCATAG+CGG | - | chr3_4:77661330-77661349 | None:intergenic | 40.0% |
| CATTAGTGTGTCTCCCATAT+TGG | + | chr3_4:77661375-77661394 | Msa0524160:intron | 40.0% | |
| GTAATGATGAACTCAAGGGA+AGG | + | chr3_4:77661570-77661589 | Msa0524160:intron | 40.0% | |
| TAGTACTTGTGGGTGTGAAA+AGG | + | chr3_4:77661628-77661647 | Msa0524160:intron | 40.0% | |
| AGGCAAAGGTGGTCTTTAAA+TGG | + | chr3_4:77661648-77661667 | Msa0524160:intron | 40.0% | |
| TTACCATGTTTGGTAAGGCA+AGG | - | chr3_4:77661683-77661702 | None:intergenic | 40.0% | |
| CGTCTTTACCATGTTTGGTA+AGG | - | chr3_4:77661688-77661707 | None:intergenic | 40.0% | |
| TTCATGATGACAGGAAACTG+GGG | - | chr3_4:77661799-77661818 | None:intergenic | 40.0% | |
| GTTCATGATGACAGGAAACT+GGG | - | chr3_4:77661800-77661819 | None:intergenic | 40.0% | |
| TTCCTGTCATCATGAACCTA+TGG | + | chr3_4:77661803-77661822 | Msa0524160:intron | 40.0% | |
| TTCCATAGGTTCATGATGAC+AGG | - | chr3_4:77661808-77661827 | None:intergenic | 40.0% | |
| ATTAAGACTGGGAAGACGTT+TGG | + | chr3_4:77661992-77662011 | Msa0524160:intron | 40.0% | |
| TCCCCTAGATAGATATCTCA+TGG | - | chr3_4:77662121-77662140 | None:intergenic | 40.0% | |
| ! | GGGCATTTGAATGAGCTTTT+TGG | - | chr3_4:77662246-77662265 | None:intergenic | 40.0% |
| !!! | ATGGGGAAACTTATTTTGCC+TGG | - | chr3_4:77662330-77662349 | None:intergenic | 40.0% |
| TTATACCTTGGAGTGCGTAA+TGG | - | chr3_4:77662436-77662455 | None:intergenic | 40.0% | |
| CGCACTCCAAGGTATAATTA+CGG | + | chr3_4:77662439-77662458 | Msa0524160:intron | 40.0% | |
| !! | CTTGAGGATTAGTCTCATAG+AGG | - | chr3_4:77662481-77662500 | None:intergenic | 40.0% |
| CTCCAAGTTCAAAGACTAAG+TGG | - | chr3_4:77662593-77662612 | None:intergenic | 40.0% | |
| GCAGTTAGCACTAGCAATTA+GGG | - | chr3_4:77662681-77662700 | None:intergenic | 40.0% | |
| AGCAGTTAGCACTAGCAATT+AGG | - | chr3_4:77662682-77662701 | None:intergenic | 40.0% | |
| ! | ATCTGAAGTTAGTGCTTGTG+TGG | + | chr3_4:77662702-77662721 | Msa0524160:intron | 40.0% |
| AAGTTAGTGCTTGTGTGGAA+AGG | + | chr3_4:77662707-77662726 | Msa0524160:intron | 40.0% | |
| TTTCTGCACATGAATATGCC+CGG | + | chr3_4:77663160-77663179 | Msa0524160:intron | 40.0% | |
| AGTTCCATCAATTATCAGGC+CGG | - | chr3_4:77663182-77663201 | None:intergenic | 40.0% | |
| CTCAGACATTCTATTAGGCA+TGG | + | chr3_4:77663304-77663323 | Msa0524160:CDS | 40.0% | |
| CCCAATTGTTATACTCTGCA+TGG | + | chr3_4:77663346-77663365 | Msa0524160:CDS | 40.0% | |
| TGTTATACTCTGCATGGATG+GGG | + | chr3_4:77663352-77663371 | Msa0524160:CDS | 40.0% | |
| TTCCTCCTACATCAGATTCT+TGG | + | chr3_4:77663513-77663532 | Msa0524160:CDS | 40.0% | |
| TCCTCCTACATCAGATTCTT+GGG | + | chr3_4:77663514-77663533 | Msa0524160:CDS | 40.0% | |
| TAAGTAGAGATAGCGACAAG+AGG | - | chr3_4:77663715-77663734 | None:intergenic | 40.0% | |
| TCTTGTCGCTATCTCTACTT+AGG | + | chr3_4:77663714-77663733 | Msa0524160:intron | 40.0% | |
| !! | TGTTGTCTCAAGCTTTGGAT+AGG | + | chr3_4:77663764-77663783 | Msa0524160:CDS | 40.0% |
| CAATGACAGGCTTCTCTTTA+AGG | - | chr3_4:77663855-77663874 | None:intergenic | 40.0% | |
| AATTAACAGCTCAGTGGCAA+TGG | - | chr3_4:77663970-77663989 | None:intergenic | 40.0% | |
| AGACGTTGAACACGACTTTA+GGG | + | chr3_4:77664036-77664055 | Msa0524160:intron | 40.0% | |
| TCCGTCGCAAACATCATATA+TGG | - | chr3_4:77664211-77664230 | None:intergenic | 40.0% | |
| CACTAGAAGACACAGAGTTT+GGG | - | chr3_4:77664306-77664325 | None:intergenic | 40.0% | |
| ! | AGTCGCAATATTTGTTGGGA+CGG | - | chr3_4:77664344-77664363 | None:intergenic | 40.0% |
| CTACAAGACAAAAGGGACTT+TGG | - | chr3_4:77664446-77664465 | None:intergenic | 40.0% | |
| ! | TCCCTTTTGTCTTGTAGTGA+CGG | + | chr3_4:77664449-77664468 | Msa0524160:intron | 40.0% |
| TGCATAACCGATTAACGACA+TGG | + | chr3_4:77664790-77664809 | Msa0524160:three_prime_UTR | 40.0% | |
| ! | TTTCTTCTGGGAACCACATG+TGG | + | chr3_4:77660276-77660295 | Msa0524160:five_prime_UTR | 45.0% |
| ! | TTCTTCTGGGAACCACATGT+GGG | + | chr3_4:77660277-77660296 | Msa0524160:five_prime_UTR | 45.0% |
| GAATTGGTTGGAAACGAGCA+AGG | + | chr3_4:77660443-77660462 | Msa0524160:CDS | 45.0% | |
| GGACCACAAATTTCATGAGC+TGG | + | chr3_4:77660481-77660500 | Msa0524160:CDS | 45.0% | |
| ! | TCCGGTGGGAATATGCTTTT+TGG | + | chr3_4:77661104-77661123 | Msa0524160:intron | 45.0% |
| GATTCTGCCTGAAAGGAGAT+TGG | - | chr3_4:77661179-77661198 | None:intergenic | 45.0% | |
| ATCTCCTTTCAGGCAGAATC+TGG | + | chr3_4:77661179-77661198 | Msa0524160:intron | 45.0% | |
| GACCTCAACTAAACACTCCA+AGG | + | chr3_4:77661270-77661289 | Msa0524160:intron | 45.0% | |
| ! | AAGGTATTCCCAGTTTCCCA+CGG | + | chr3_4:77661289-77661308 | Msa0524160:intron | 45.0% |
| ACTAATCCTTGAGTCTGCAG+CGG | + | chr3_4:77661337-77661356 | Msa0524160:intron | 45.0% | |
| TAAACGGCATGAACCGTCAA+TGG | - | chr3_4:77661441-77661460 | None:intergenic | 45.0% | |
| TTGTGGGTGTGAAAAGGCAA+AGG | + | chr3_4:77661634-77661653 | Msa0524160:intron | 45.0% | |
| TGTTTGGTAAGGCAAGGCAA+AGG | - | chr3_4:77661677-77661696 | None:intergenic | 45.0% | |
| TTGCCTTGCCTTACCAAACA+TGG | + | chr3_4:77661677-77661696 | Msa0524160:intron | 45.0% | |
| TCATGATGACAGGAAACTGG+GGG | - | chr3_4:77661798-77661817 | None:intergenic | 45.0% | |
| GGTTCATGATGACAGGAAAC+TGG | - | chr3_4:77661801-77661820 | None:intergenic | 45.0% | |
| GTTCCATCAATTATCAGGCC+GGG | - | chr3_4:77663181-77663200 | None:intergenic | 45.0% | |
| GGCCTGATAATTGATGGAAC+TGG | + | chr3_4:77663181-77663200 | Msa0524160:intron | 45.0% | |
| GAGCAAGAGTGAGTTCAAAG+AGG | + | chr3_4:77663277-77663296 | Msa0524160:CDS | 45.0% | |
| ATTCTATTAGGCATGGCTGC+TGG | + | chr3_4:77663311-77663330 | Msa0524160:CDS | 45.0% | |
| ACCCAAGAATCTGATGTAGG+AGG | - | chr3_4:77663518-77663537 | None:intergenic | 45.0% | |
| AAAGCTTGAGACAACAGTGC+CGG | - | chr3_4:77663760-77663779 | None:intergenic | 45.0% | |
| ! | CAAGAAAGTGGCATTGAGTG+TGG | + | chr3_4:77663822-77663841 | Msa0524160:CDS | 45.0% |
| TCACTGTGAGCTACAATGAC+AGG | - | chr3_4:77663868-77663887 | None:intergenic | 45.0% | |
| ACGTCTGCATACAAGAGAGT+AGG | - | chr3_4:77664022-77664041 | None:intergenic | 45.0% | |
| CAGACGTTGAACACGACTTT+AGG | + | chr3_4:77664035-77664054 | Msa0524160:intron | 45.0% | |
| TCTTCAATTGCACCAACTGG+AGG | - | chr3_4:77664146-77664165 | None:intergenic | 45.0% | |
| ! | TCCAGTTGGTGCAATTGAAG+AGG | + | chr3_4:77664145-77664164 | Msa0524160:CDS | 45.0% |
| ACCTCTTCAATTGCACCAAC+TGG | - | chr3_4:77664149-77664168 | None:intergenic | 45.0% | |
| CCACTAGAAGACACAGAGTT+TGG | - | chr3_4:77664307-77664326 | None:intergenic | 45.0% | |
| CCAAACTCTGTGTCTTCTAG+TGG | + | chr3_4:77664304-77664323 | Msa0524160:intron | 45.0% | |
| ! | AGACAAAAGGGACTTTGGGA+CGG | - | chr3_4:77664441-77664460 | None:intergenic | 45.0% |
| CCCGTCACTACAAGACAAAA+GGG | - | chr3_4:77664453-77664472 | None:intergenic | 45.0% | |
| ! | CCCTTTTGTCTTGTAGTGAC+GGG | + | chr3_4:77664450-77664469 | Msa0524160:intron | 45.0% |
| ACCCGTCACTACAAGACAAA+AGG | - | chr3_4:77664454-77664473 | None:intergenic | 45.0% | |
| TAACCGATTAACGACATGGC+TGG | + | chr3_4:77664794-77664813 | Msa0524160:three_prime_UTR | 45.0% | |
| TGACCAGCCATGTCGTTAAT+CGG | - | chr3_4:77664800-77664819 | None:intergenic | 45.0% | |
| ! | TCTTCTGGGAACCACATGTG+GGG | + | chr3_4:77660278-77660297 | Msa0524160:five_prime_UTR | 50.0% |
| GTTAAGTGTGTCCCCACATG+TGG | - | chr3_4:77660292-77660311 | None:intergenic | 50.0% | |
| GAAAACCAGAAGAGGAACGG+AGG | + | chr3_4:77660386-77660405 | Msa0524160:CDS | 50.0% | |
| GAGCTGGATAAGGACAGAGA+TGG | + | chr3_4:77660497-77660516 | Msa0524160:CDS | 50.0% | |
| AGAAAGGGGCTAACTTGGTC+AGG | - | chr3_4:77660889-77660908 | None:intergenic | 50.0% | |
| CCATGATAACATGGTCGGTC+CGG | + | chr3_4:77661086-77661105 | Msa0524160:intron | 50.0% | |
| GTCACCAGATTCTGCCTGAA+AGG | - | chr3_4:77661186-77661205 | None:intergenic | 50.0% | |
| GTGGGAAACTGGGAATACCT+TGG | - | chr3_4:77661290-77661309 | None:intergenic | 50.0% | |
| TAGTCTCATAGCGGCCCAAA+GGG | - | chr3_4:77661321-77661340 | None:intergenic | 50.0% | |
| TTAGTCTCATAGCGGCCCAA+AGG | - | chr3_4:77661322-77661341 | None:intergenic | 50.0% | |
| TGGGTGTGAAAAGGCAAAGG+TGG | + | chr3_4:77661637-77661656 | Msa0524160:intron | 50.0% | |
| AAGAACGCAGCAAGTGTACC+AGG | + | chr3_4:77662309-77662328 | Msa0524160:intron | 50.0% | |
| GACATCCATTACGCACTCCA+AGG | + | chr3_4:77662428-77662447 | Msa0524160:intron | 50.0% | |
| ACTAATCCTCAAGTCGGCAG+CGG | + | chr3_4:77662488-77662507 | Msa0524160:intron | 50.0% | |
| ATGCCCGGCCTGATAATTGA+TGG | + | chr3_4:77663175-77663194 | Msa0524160:intron | 50.0% | |
| GGAAGACTCGATGTTGATCG+AGG | + | chr3_4:77663488-77663507 | Msa0524160:CDS | 50.0% | |
| GGCACTGTTGTCTCAAGCTT+TGG | + | chr3_4:77663759-77663778 | Msa0524160:CDS | 50.0% | |
| CTTGCAGGTGACACTAGATG+TGG | + | chr3_4:77664100-77664119 | Msa0524160:CDS | 50.0% | |
| ACTGGAGGTAAACCAGCAGA+TGG | - | chr3_4:77664131-77664150 | None:intergenic | 50.0% | |
| !! | TCTGCTGGTTTACCTCCAGT+TGG | + | chr3_4:77664131-77664150 | Msa0524160:CDS | 50.0% |
| AACCAGAAGAGGAACGGAGG+AGG | + | chr3_4:77660389-77660408 | Msa0524160:CDS | 55.0% | |
| GGAGGAGGAGAGGTTCTTGA+TGG | + | chr3_4:77660407-77660426 | Msa0524160:CDS | 55.0% | |
| !! | AGCACCGATGTCAGCAACAG+CGG | - | chr3_4:77660549-77660568 | None:intergenic | 55.0% |
| !! | TGCTCTTGGTTTGCCTGCTC+AGG | + | chr3_4:77660568-77660587 | Msa0524160:CDS | 55.0% |
| !! | GCTCTTGGTTTGCCTGCTCA+GGG | + | chr3_4:77660569-77660588 | Msa0524160:CDS | 55.0% |
| CCGGACCGACCATGTTATCA+TGG | - | chr3_4:77661089-77661108 | None:intergenic | 55.0% | |
| TGATAACATGGTCGGTCCGG+TGG | + | chr3_4:77661089-77661108 | Msa0524160:intron | 55.0% | |
| GATAACATGGTCGGTCCGGT+GGG | + | chr3_4:77661090-77661109 | Msa0524160:intron | 55.0% | |
| GGTCTAAGCCGTGGGAAACT+GGG | - | chr3_4:77661300-77661319 | None:intergenic | 55.0% | |
| TTCCCACGGCTTAGACCCTT+TGG | + | chr3_4:77661303-77661322 | Msa0524160:intron | 55.0% | |
| TCCCACGGCTTAGACCCTTT+GGG | + | chr3_4:77661304-77661323 | Msa0524160:intron | 55.0% | |
| GATGTTCCGCTGCAGACTCA+AGG | - | chr3_4:77661346-77661365 | None:intergenic | 55.0% | |
| TGAGTCTGCAGCGGAACATC+CGG | + | chr3_4:77661346-77661365 | Msa0524160:intron | 55.0% | |
| CTAATCCTCAAGTCGGCAGC+GGG | + | chr3_4:77662489-77662508 | Msa0524160:intron | 55.0% | |
| AACAGCTCAGTGGCAATGGC+AGG | - | chr3_4:77663966-77663985 | None:intergenic | 55.0% | |
| GATGTGGTGTCTCCATCTGC+TGG | + | chr3_4:77664116-77664135 | Msa0524160:CDS | 55.0% | |
| CTCCTCCTCCGTTCCTCTTC+TGG | - | chr3_4:77660394-77660413 | None:intergenic | 60.0% | |
| CAGAAGAGGAACGGAGGAGG+AGG | + | chr3_4:77660392-77660411 | Msa0524160:CDS | 60.0% | |
| ! | AGCGGGCTCAAGCTCCTTCA+AGG | - | chr3_4:77660531-77660550 | None:intergenic | 60.0% |
| GAGCCCGCTGTTGCTGACAT+CGG | + | chr3_4:77660542-77660561 | Msa0524160:CDS | 60.0% | |
| ! | GCACCGATGTCAGCAACAGC+GGG | - | chr3_4:77660548-77660567 | None:intergenic | 60.0% |
| !! | GCTGACATCGGTGCTGCTCT+TGG | + | chr3_4:77660554-77660573 | Msa0524160:CDS | 60.0% |
| TCAGGAGTAGTGCCCTGAGC+AGG | - | chr3_4:77660584-77660603 | None:intergenic | 60.0% | |
| GGGTCTAAGCCGTGGGAAAC+TGG | - | chr3_4:77661301-77661320 | None:intergenic | 60.0% | |
| GCCCAAAGGGTCTAAGCCGT+GGG | - | chr3_4:77661308-77661327 | None:intergenic | 60.0% | |
| GAGGAACGGAGGAGGAGGAG+AGG | + | chr3_4:77660397-77660416 | Msa0524160:CDS | 65.0% | |
| GGCCCAAAGGGTCTAAGCCG+TGG | - | chr3_4:77661309-77661328 | None:intergenic | 65.0% | |
| !! | GATGTCCCGCTGCCGACTTG+AGG | - | chr3_4:77662497-77662516 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77660239 | 77664949 | 77660239 | ID=Msa0524160;Name=Msa0524160 |
| chr3_4 | mRNA | 77660239 | 77664949 | 77660239 | ID=Msa0524160-mRNA-1;Parent=Msa0524160;Name=Msa0524160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=144|1|1|1|1|1|5|188|363 |
| chr3_4 | exon | 77660239 | 77660625 | 77660239 | ID=Msa0524160-mRNA-1:exon:22774;Parent=Msa0524160-mRNA-1 |
| chr3_4 | exon | 77663239 | 77663535 | 77663239 | ID=Msa0524160-mRNA-1:exon:22775;Parent=Msa0524160-mRNA-1 |
| chr3_4 | exon | 77663736 | 77663948 | 77663736 | ID=Msa0524160-mRNA-1:exon:22776;Parent=Msa0524160-mRNA-1 |
| chr3_4 | exon | 77664038 | 77664166 | 77664038 | ID=Msa0524160-mRNA-1:exon:22777;Parent=Msa0524160-mRNA-1 |
| chr3_4 | exon | 77664552 | 77664949 | 77664552 | ID=Msa0524160-mRNA-1:exon:22778;Parent=Msa0524160-mRNA-1 |
| chr3_4 | five_prime_UTR | 77660239 | 77660382 | 77660239 | ID=Msa0524160-mRNA-1:five_prime_utr;Parent=Msa0524160-mRNA-1 |
| chr3_4 | CDS | 77660383 | 77660625 | 77660383 | ID=Msa0524160-mRNA-1:cds;Parent=Msa0524160-mRNA-1 |
| chr3_4 | CDS | 77663239 | 77663535 | 77663239 | ID=Msa0524160-mRNA-1:cds;Parent=Msa0524160-mRNA-1 |
| chr3_4 | CDS | 77663736 | 77663948 | 77663736 | ID=Msa0524160-mRNA-1:cds;Parent=Msa0524160-mRNA-1 |
| chr3_4 | CDS | 77664038 | 77664166 | 77664038 | ID=Msa0524160-mRNA-1:cds;Parent=Msa0524160-mRNA-1 |
| chr3_4 | CDS | 77664552 | 77664761 | 77664552 | ID=Msa0524160-mRNA-1:cds;Parent=Msa0524160-mRNA-1 |
| chr3_4 | three_prime_UTR | 77664762 | 77664949 | 77664762 | ID=Msa0524160-mRNA-1:three_prime_utr;Parent=Msa0524160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
