AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463090 MtrunA17_Chr3g0113211 99.310 290 2 0 1 290 1 290 0.0 587
Msa0463090 MtrunA17_Chr5g0436701 93.080 289 20 0 1 289 1 289 0.0 550
Msa0463090 MtrunA17_Chr8g0386961 88.070 285 32 1 4 288 3 285 0.0 510
Msa0463090 MtrunA17_Chr5g0397391 84.321 287 43 1 4 290 3 287 3.75e-179 495
Msa0463090 MtrunA17_Chr4g0006001 80.690 290 54 2 1 289 1 289 1.08e-172 479
Msa0463090 MtrunA17_Chr7g0264111 72.481 258 64 2 32 283 16 272 1.14e-135 385
Msa0463090 MtrunA17_Chr3g0145671 71.264 261 74 1 28 288 10 269 5.03e-134 380
Msa0463090 MtrunA17_Chr1g0199731 69.004 271 77 2 19 283 3 272 1.86e-133 379
Msa0463090 MtrunA17_Chr2g0326621 68.182 264 76 2 32 288 17 279 2.78e-132 376
Msa0463090 MtrunA17_Chr4g0029071 65.217 276 89 2 19 288 3 277 2.66e-131 374
Msa0463090 MtrunA17_Chr1g0188771 35.270 241 137 6 55 290 21 247 2.06e-31 117
Msa0463090 MtrunA17_Chr2g0331261 34.615 234 138 5 50 280 15 236 4.00e-31 116
Msa0463090 MtrunA17_Chr6g0478191 37.872 235 130 6 55 285 21 243 4.09e-31 116
Msa0463090 MtrunA17_Chr8g0340161 35.622 233 133 7 50 277 12 232 1.84e-29 112
Msa0463090 MtrunA17_Chr5g0399341 35.841 226 129 5 55 277 19 231 2.85e-29 111
Msa0463090 MtrunA17_Chr4g0030861 34.025 241 136 6 44 277 10 234 3.08e-28 108
Msa0463090 MtrunA17_Chr7g0264961 33.891 239 142 6 45 280 11 236 5.51e-28 108
Msa0463090 MtrunA17_Chr1g0212671 33.871 248 136 8 44 281 10 239 1.11e-27 107
Msa0463090 MtrunA17_Chr1g0146161 32.895 228 138 6 47 273 11 224 5.46e-25 100
Msa0463090 MtrunA17_Chr7g0222791 31.950 241 141 6 44 277 10 234 6.35e-24 97.4
Msa0463090 MtrunA17_Chr1g0146171 31.897 232 127 9 55 277 19 228 3.28e-23 95.5
Msa0463090 MtrunA17_Chr5g0435051 25.969 258 166 6 26 278 9 246 8.44e-19 84.0
Msa0463090 MtrunA17_Chr8g0379901 26.236 263 177 6 26 287 10 256 2.22e-18 82.8
Msa0463090 MtrunA17_Chr2g0284631 29.167 216 131 6 58 270 94 290 1.02e-17 82.0
Msa0463090 MtrunA17_Chr4g0020781 34.021 194 100 7 103 290 29 200 1.10e-17 79.7
Msa0463090 MtrunA17_Chr2g0284591 32.710 214 126 7 58 270 39 235 1.13e-17 80.9
Msa0463090 MtrunA17_Chr4g0001221 28.279 244 147 8 37 280 68 283 1.24e-17 81.3
Msa0463090 MtrunA17_Chr4g0044201 27.434 226 131 6 58 280 38 233 1.34e-17 80.5
Msa0463090 MtrunA17_Chr5g0426131 30.043 233 140 7 50 278 32 245 1.63e-17 80.5
Msa0463090 MtrunA17_Chr4g0038591 30.224 268 151 13 38 282 27 281 1.96e-17 81.3
Msa0463090 MtrunA17_Chr8g0379911 27.074 229 151 5 52 280 35 247 2.60e-17 79.7
Msa0463090 MtrunA17_Chr2g0284611 31.963 219 131 7 53 270 36 237 8.18e-17 78.6
Msa0463090 MtrunA17_Chr7g0217331 27.948 229 146 6 53 280 35 245 1.71e-16 77.8
Msa0463090 MtrunA17_Chr2g0333771 29.279 222 140 6 59 280 84 288 2.36e-16 77.8
Msa0463090 MtrunA17_Chr3g0079421 28.042 189 117 4 92 277 59 231 2.39e-15 74.3
Msa0463090 MtrunA17_Chr4g0038611 29.167 192 120 6 102 282 32 218 7.22e-15 72.8
Msa0463090 MtrunA17_Chr2g0284581 30.093 216 129 6 58 270 41 237 7.46e-15 73.2
Msa0463090 MtrunA17_Chr2g0284601 31.351 185 114 3 86 270 18 189 6.22e-14 69.7
Msa0463090 MtrunA17_Chr1g0184541 26.754 228 142 6 52 275 59 265 9.38e-14 70.1
Msa0463090 MtrunA17_Chr1g0201331 26.126 222 147 6 59 280 78 282 3.40e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463090 AT4G00430.1 84.828 290 41 2 1 290 1 287 2.13e-180 498
Msa0463090 AT2G45960.1 83.448 290 44 2 1 290 1 286 3.63e-177 490
Msa0463090 AT4G23400.1 84.483 290 42 2 1 290 1 287 1.63e-169 471
Msa0463090 AT3G61430.2 83.793 290 43 2 1 290 1 286 2.76e-167 465
Msa0463090 AT3G61430.1 83.793 290 43 2 1 290 1 286 2.76e-167 465
Msa0463090 AT1G01620.1 83.448 290 44 2 1 290 1 286 1.61e-166 463
Msa0463090 AT2G45960.2 83.398 259 39 2 1 259 1 255 4.62e-156 436
Msa0463090 AT2G45960.3 83.398 259 39 2 1 259 1 255 6.57e-155 434
Msa0463090 AT2G37180.1 71.863 263 67 3 32 288 14 275 4.67e-133 379
Msa0463090 AT4G35100.1 71.318 258 73 1 31 288 14 270 2.87e-132 376
Msa0463090 AT4G35100.2 71.318 258 73 1 31 288 14 270 2.87e-132 376
Msa0463090 AT2G37170.2 71.483 263 68 3 32 288 57 318 4.88e-132 377
Msa0463090 AT2G37170.1 71.483 263 68 3 32 288 14 275 5.54e-132 376
Msa0463090 AT3G53420.1 71.483 263 68 3 32 288 16 277 7.63e-132 375
Msa0463090 AT3G53420.2 71.483 263 68 3 32 288 16 277 7.63e-132 375
Msa0463090 AT2G16850.1 69.318 264 80 1 25 288 6 268 1.09e-130 372
Msa0463090 AT3G54820.1 68.679 265 76 2 30 288 13 276 1.53e-130 372
Msa0463090 AT1G01620.2 85.116 215 31 1 76 290 1 214 6.33e-129 365
Msa0463090 AT5G60660.1 68.441 263 76 2 32 288 16 277 4.08e-128 366
Msa0463090 AT2G39010.1 66.792 265 81 2 30 288 13 276 1.56e-127 365
Msa0463090 AT4G00430.2 82.028 217 36 2 1 217 1 214 1.53e-126 359
Msa0463090 AT2G39010.2 62.437 197 67 2 23 213 6 201 6.24e-83 249
Msa0463090 AT3G16240.1 35.498 231 134 5 50 277 14 232 4.30e-31 117
Msa0463090 AT1G73190.1 35.918 245 126 9 55 285 24 251 8.41e-31 116
Msa0463090 AT1G17810.1 35.593 236 130 7 55 281 24 246 1.00e-30 116
Msa0463090 AT5G47450.1 36.638 232 130 7 50 277 14 232 7.09e-30 113
Msa0463090 AT4G01470.1 34.694 245 136 7 45 281 11 239 3.15e-29 112
Msa0463090 AT2G36830.1 35.102 245 132 10 44 279 10 236 1.42e-27 107
Msa0463090 AT3G26520.1 34.335 233 130 7 55 280 22 238 1.96e-26 104
Msa0463090 AT4G17340.1 34.802 227 131 6 55 277 19 232 1.98e-26 104
Msa0463090 AT2G25810.1 33.913 230 134 8 55 281 19 233 3.10e-24 98.6
Msa0463090 AT3G47440.1 32.377 244 122 11 55 281 23 240 4.87e-22 92.8
Msa0463090 AT1G31885.1 29.084 251 149 8 26 270 22 249 9.13e-19 85.1
Msa0463090 AT4G19030.1 27.397 292 185 9 2 288 11 280 1.93e-18 84.0
Msa0463090 AT5G37820.1 29.730 185 113 5 87 269 72 241 3.40e-16 77.4
Msa0463090 AT5G37820.2 29.730 185 113 5 87 269 108 277 3.76e-16 77.8
Msa0463090 AT4G18910.1 28.279 244 160 6 41 280 36 268 2.92e-15 74.7
Msa0463090 AT1G31885.2 28.571 196 122 5 81 270 12 195 9.08e-15 73.2
Msa0463090 AT1G80760.1 26.908 249 162 7 32 280 60 288 9.17e-15 73.6
Msa0463090 AT4G10380.1 25.670 261 162 7 33 278 41 284 1.38e-14 73.2
Msa0463090 AT2G34390.1 25.887 282 182 9 6 280 2 263 3.77e-14 71.6
Msa0463090 AT3G06100.1 27.660 235 147 8 55 285 46 261 8.64e-13 67.4
Msa0463090 AT2G34390.2 27.111 225 150 7 58 280 9 221 1.86e-12 66.2
Msa0463090 AT5G37810.1 26.203 187 117 5 87 269 72 241 3.73e-12 65.9
Msa0463090 AT3G06100.2 27.778 234 143 8 58 288 1 211 3.79e-12 65.1

Find 102 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAATTGCTTGGTCTTT+TGG 0.175483 3_3:-62352133 Msa0463090:CDS
CATCACTATCTTGACTGTTA+TGG 0.255460 3_3:-62352197 Msa0463090:CDS
CTGTGGTGCTGGTGTGGTTA+AGG 0.288319 3_3:-62351345 Msa0463090:CDS
ATCACTATCTTGACTGTTAT+GGG 0.306182 3_3:-62352196 Msa0463090:CDS
AGTGACATTCGGTTTGTTCT+TGG 0.325309 3_3:-62351429 Msa0463090:CDS
ATACCAATTGGTTGTCTCTC+TGG 0.333635 3_3:+62352358 None:intergenic
TGTGGTGCTGGTGTGGTTAA+GGG 0.341527 3_3:-62351344 Msa0463090:CDS
TTCTGGGTTGGACCATTCAT+TGG 0.343204 3_3:-62350718 Msa0463090:CDS
ATTATCTTCAACAAAGATCT+TGG 0.350263 3_3:-62350866 Msa0463090:CDS
AGCCTTCTGAGCTTACTTCA+TGG 0.361381 3_3:-62352273 Msa0463090:CDS
TGTAAAACTGTTGGTATTCA+AGG 0.380854 3_3:-62352151 Msa0463090:CDS
TTGATACCAGTTCCAGTGAT+TGG 0.381840 3_3:+62350914 None:intergenic
GTGGTGAGTGCGTTGGGTGA+TGG 0.383773 3_3:-62350483 Msa0463090:three_prime_UTR
TAAAGAACAAGATGTTTCAT+TGG 0.400740 3_3:-62352395 Msa0463090:CDS
TACTGTACCGCTGGTATCTC+TGG 0.404434 3_3:-62352088 Msa0463090:intron
CTTGGTGCTATCTGTGGTGC+TGG 0.411516 3_3:-62351356 Msa0463090:CDS
GGTGCTAACTTTGTTGCCCC+TGG 0.413480 3_3:-62351284 Msa0463090:CDS
TACAGGAACGTGGGAGTCTC+TGG 0.414634 3_3:+62351169 None:intergenic
TGATACCAGTTCCAGTGATT+GGG 0.425209 3_3:+62350915 None:intergenic
TCATGGTCTTTCTACAGAGC+TGG 0.438821 3_3:-62352256 Msa0463090:CDS
ATCAACCCTGCTAGGAGTCT+TGG 0.440510 3_3:-62350896 Msa0463090:CDS
GTTGCCCCTGGTTACACTAA+AGG 0.441082 3_3:-62351272 Msa0463090:CDS
GGAGTCTCTGGCGCTACGCT+TGG 0.442884 3_3:+62351181 None:intergenic
CAAAACTAAGCCAACTTTGT+GGG 0.446687 3_3:-62350599 Msa0463090:three_prime_UTR
AACGTGTTATGATTATTATT+AGG 0.450107 3_3:-62350505 Msa0463090:three_prime_UTR
TCTTCAACAAAGATCTTGGT+TGG 0.452168 3_3:-62350862 Msa0463090:CDS
AGTTCCAGTGATTGGGATAG+TGG 0.463096 3_3:+62350922 None:intergenic
ACTATCCCAATCACTGGAAC+TGG 0.463239 3_3:-62350920 Msa0463090:CDS
TATTAGGTGGTGAGTGCGTT+GGG 0.463704 3_3:-62350489 Msa0463090:three_prime_UTR
GCCCTTGTTTACTGTACCGC+TGG 0.465210 3_3:-62352097 Msa0463090:CDS
AAAGAACAAGATGTTTCATT+GGG 0.468564 3_3:-62352394 Msa0463090:CDS
TACCAATTGGTTGTCTCTCT+GGG 0.469628 3_3:+62352359 None:intergenic
TGGTGAGTGCGTTGGGTGAT+GGG 0.469893 3_3:-62350482 Msa0463090:three_prime_UTR
CTCTGAGCTGCAATACCAAT+TGG 0.474372 3_3:+62352346 None:intergenic
AACAAACCGAATGTCACTGC+TGG 0.475621 3_3:+62351434 None:intergenic
TAAAATAAAACCCACAAAGT+TGG 0.480980 3_3:+62350589 None:intergenic
GAAATAATTAAAACCAGATA+AGG 0.484007 3_3:+62350560 None:intergenic
AATTAATTACTTGACTTGAA+AGG 0.484353 3_3:+62350649 None:intergenic
AGCTCAGAAGGCTCAAACAA+TGG 0.493521 3_3:+62352283 None:intergenic
ATTACTTGACTTGAAAGGAA+TGG 0.503755 3_3:+62350654 None:intergenic
GACCAGAGCTTTGTTCTACA+TGG 0.503977 3_3:-62351390 Msa0463090:CDS
CATCAAAGATCATAAACCGT+TGG 0.504031 3_3:+62350622 None:intergenic
TGCTATCTGTGGTGCTGGTG+TGG 0.507082 3_3:-62351351 Msa0463090:CDS
GGCGCTACGCTTGGCATCAG+TGG 0.507135 3_3:+62351190 None:intergenic
TGTAGTCCTTGCCATCATCA+TGG 0.507922 3_3:+62352323 None:intergenic
CCATCACCTTTAGTGTAACC+AGG 0.509306 3_3:+62351266 None:intergenic
TTGGTATTCAAGGAATTGCT+TGG 0.510082 3_3:-62352141 Msa0463090:CDS
GGACTTGGTGCTGAGATTGT+TGG 0.510762 3_3:-62351245 Msa0463090:CDS
CATTCGGTTTGTTCTTGGCA+AGG 0.513044 3_3:-62351424 Msa0463090:CDS
ATAAACCCAGCAGTGACATT+CGG 0.513323 3_3:-62351440 Msa0463090:CDS
GAAGGCTCAAACAATGGTGC+TGG 0.515315 3_3:+62352289 None:intergenic
GGCATCAGTGGCGGAGAAGA+CGG 0.517403 3_3:+62351202 None:intergenic
GCAAAACTAAGCCAACTTTG+TGG 0.530146 3_3:-62350600 Msa0463090:three_prime_UTR
TCAAACAATGGTGCTGGTGG+TGG 0.535198 3_3:+62352295 None:intergenic
ATATTCCAACTTAAAAGTAA+TGG 0.536522 3_3:+62350451 None:intergenic
CATGGTCTTTCTACAGAGCT+GGG 0.538255 3_3:-62352255 Msa0463090:CDS
GACCATGAAGTAAGCTCAGA+AGG 0.542140 3_3:+62352271 None:intergenic
TTCCCAGAGAGACAACCAAT+TGG 0.543575 3_3:-62352361 Msa0463090:CDS
TTGGCCACTATCCCAATCAC+TGG 0.548120 3_3:-62350926 Msa0463090:CDS
GCAGCACCAAGACTCCTAGC+AGG 0.553150 3_3:+62350890 None:intergenic
GTGTTATGATTATTATTAGG+TGG 0.557918 3_3:-62350502 Msa0463090:three_prime_UTR
GATGTAAAGAAACAGAAAAG+TGG 0.558568 3_3:+62352216 None:intergenic
TGATGATGGCAAGGACTACA+AGG 0.561975 3_3:-62352320 Msa0463090:CDS
AAGTAATTAATTTAATCCAA+CGG 0.563313 3_3:-62350638 Msa0463090:exon
ATATGAATATTGAGTGGTTG+AGG 0.563353 3_3:+62352468 None:intergenic
TTATTAGGTGGTGAGTGCGT+TGG 0.563840 3_3:-62350490 Msa0463090:three_prime_UTR
CACCATGTAGAACAAAGCTC+TGG 0.569283 3_3:+62351388 None:intergenic
ATTACCCCACACACATGGGT+AGG 0.570095 3_3:+62350417 None:intergenic
CAAACCCTTGGTGCTATCTG+TGG 0.570105 3_3:-62351362 Msa0463090:CDS
TAACAATTACCCCACACACA+TGG 0.571707 3_3:+62350412 None:intergenic
CCTGGTTACACTAAAGGTGA+TGG 0.579850 3_3:-62351266 Msa0463090:CDS
ACAGCGAACCCAATTGGCAG+TGG 0.580895 3_3:+62350962 None:intergenic
ACAAAGAGAGTGAGCTATGG+AGG 0.581560 3_3:-62352419 Msa0463090:exon
ACAAACCCTACCCATGTGTG+TGG 0.586065 3_3:-62350423 Msa0463090:three_prime_UTR
GAGTCTAAGTGTAAAACTGT+TGG 0.586868 3_3:-62352160 Msa0463090:CDS
TTACCCCACACACATGGGTA+GGG 0.588343 3_3:+62350418 None:intergenic
CAAACCCTACCCATGTGTGT+GGG 0.588848 3_3:-62350422 Msa0463090:three_prime_UTR
GCAGCTCAGAGCCATGATGA+TGG 0.589625 3_3:-62352334 Msa0463090:CDS
GAACTGGTATCAACCCTGCT+AGG 0.594160 3_3:-62350904 Msa0463090:CDS
TACCAGCGGTACAGTAAACA+AGG 0.595691 3_3:+62352095 None:intergenic
GCAAGTGCTGCACCAATGAA+TGG 0.597918 3_3:+62350706 None:intergenic
TCAGAGCCATGATGATGGCA+AGG 0.598201 3_3:-62352329 Msa0463090:CDS
AACAATTACCCCACACACAT+GGG 0.599778 3_3:+62350413 None:intergenic
TCAACAAAGAGAGTGAGCTA+TGG 0.609619 3_3:-62352422 Msa0463090:exon
GGCTCAAACAATGGTGCTGG+TGG 0.611815 3_3:+62352292 None:intergenic
GCTACGCTTGGCATCAGTGG+CGG 0.612401 3_3:+62351193 None:intergenic
TACATGGTGATGCAAACCCT+TGG 0.617795 3_3:-62351374 Msa0463090:CDS
ACAAACCGAATGTCACTGCT+GGG 0.620561 3_3:+62351435 None:intergenic
AAACCCTACCCATGTGTGTG+GGG 0.627051 3_3:-62350421 Msa0463090:three_prime_UTR
CATCACCTTTAGTGTAACCA+GGG 0.631898 3_3:+62351267 None:intergenic
AGCACCACAGATAGCACCAA+GGG 0.640603 3_3:+62351358 None:intergenic
TACACTAAAGGTGATGGACT+TGG 0.640675 3_3:-62351260 Msa0463090:CDS
CAGCACCAAGACTCCTAGCA+GGG 0.643712 3_3:+62350891 None:intergenic
GACGGTGTAGACAAGAACAA+AGG 0.671387 3_3:+62351220 None:intergenic
ATTAGGGACATACAGGAACG+TGG 0.684093 3_3:+62351159 None:intergenic
TTAGGGACATACAGGAACGT+GGG 0.687950 3_3:+62351160 None:intergenic
TGCTGAATATGAATATTGAG+TGG 0.704859 3_3:+62352462 None:intergenic
ATCACCTTTAGTGTAACCAG+GGG 0.709414 3_3:+62351268 None:intergenic
ACCAGCGGTACAGTAAACAA+GGG 0.726307 3_3:+62352096 None:intergenic
CAGCACCACAGATAGCACCA+AGG 0.733918 3_3:+62351357 None:intergenic
TGGCTCTGATCACAACTGTG+TGG 0.744394 3_3:+62350674 None:intergenic
ATACATACCAGAGATACCAG+CGG 0.782739 3_3:+62352081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATTTGATTAAAAAAAAAT+AGG - chr3_3:62350955-62350974 Msa0463090:CDS 10.0%
!! TGATTTGATTAAAAAAAAAT+AGG - chr3_3:62350955-62350974 Msa0463090:CDS 10.0%
!!! AATTTTGTTACTAAATTTCA+TGG + chr3_3:62350822-62350841 None:intergenic 15.0%
!! TGTTATAGTACTAATTATTT+AGG - chr3_3:62350863-62350882 Msa0463090:CDS 15.0%
!! AAGTAATTAATTTAATCCAA+CGG - chr3_3:62352211-62352230 Msa0463090:CDS 15.0%
!!! AATTTTGTTACTAAATTTCA+TGG + chr3_3:62350822-62350841 None:intergenic 15.0%
!! TGTTATAGTACTAATTATTT+AGG - chr3_3:62350863-62350882 Msa0463090:CDS 15.0%
!! AAGTAATTAATTTAATCCAA+CGG - chr3_3:62352211-62352230 Msa0463090:CDS 15.0%
!!! GTAACTTTGTTTTTTTTCTT+TGG - chr3_3:62350885-62350904 Msa0463090:CDS 20.0%
!!! AACAAAACAATTCTTAGTTT+TGG + chr3_3:62351068-62351087 None:intergenic 20.0%
!!! TGATTAACAGCTTTTTTTAA+TGG - chr3_3:62351088-62351107 Msa0463090:intron 20.0%
!! GTAACAGTAATGATTTATTA+TGG - chr3_3:62351351-62351370 Msa0463090:CDS 20.0%
!!! TTTTCTGCATTATTAGATTT+TGG - chr3_3:62351862-62351881 Msa0463090:intron 20.0%
!!! AATTAATTACTTGACTTGAA+AGG + chr3_3:62352203-62352222 None:intergenic 20.0%
!!! TATTTTATTTGATCCTTATC+TGG - chr3_3:62352276-62352295 Msa0463090:CDS 20.0%
!! GAAATAATTAAAACCAGATA+AGG + chr3_3:62352292-62352311 None:intergenic 20.0%
!! AACGTGTTATGATTATTATT+AGG - chr3_3:62352344-62352363 Msa0463090:CDS 20.0%
!! ATATTCCAACTTAAAAGTAA+TGG + chr3_3:62352401-62352420 None:intergenic 20.0%
!!! ATTACTTTTAAGTTGGAATA+TGG - chr3_3:62352400-62352419 Msa0463090:CDS 20.0%
!!! GTAACTTTGTTTTTTTTCTT+TGG - chr3_3:62350885-62350904 Msa0463090:CDS 20.0%
!!! AACAAAACAATTCTTAGTTT+TGG + chr3_3:62351068-62351087 None:intergenic 20.0%
!!! TGATTAACAGCTTTTTTTAA+TGG - chr3_3:62351088-62351107 Msa0463090:intron 20.0%
!! GTAACAGTAATGATTTATTA+TGG - chr3_3:62351351-62351370 Msa0463090:CDS 20.0%
!!! TTTTCTGCATTATTAGATTT+TGG - chr3_3:62351862-62351881 Msa0463090:intron 20.0%
!!! AATTAATTACTTGACTTGAA+AGG + chr3_3:62352203-62352222 None:intergenic 20.0%
!!! TATTTTATTTGATCCTTATC+TGG - chr3_3:62352276-62352295 Msa0463090:CDS 20.0%
!! GAAATAATTAAAACCAGATA+AGG + chr3_3:62352292-62352311 None:intergenic 20.0%
!! AACGTGTTATGATTATTATT+AGG - chr3_3:62352344-62352363 Msa0463090:CDS 20.0%
!! ATATTCCAACTTAAAAGTAA+TGG + chr3_3:62352401-62352420 None:intergenic 20.0%
!!! ATTACTTTTAAGTTGGAATA+TGG - chr3_3:62352400-62352419 Msa0463090:CDS 20.0%
! TAAAGAACAAGATGTTTCAT+TGG - chr3_3:62350454-62350473 Msa0463090:three_prime_UTR 25.0%
! AAAGAACAAGATGTTTCATT+GGG - chr3_3:62350455-62350474 Msa0463090:three_prime_UTR 25.0%
! ACTAAATTTCATGGTTACTA+GGG + chr3_3:62350813-62350832 None:intergenic 25.0%
! TACTAAATTTCATGGTTACT+AGG + chr3_3:62350814-62350833 None:intergenic 25.0%
!!! CTTTAGAACAAATTAGTACT+AGG + chr3_3:62350918-62350937 None:intergenic 25.0%
! ATTACCATAATACATGATGA+AGG - chr3_3:62351151-62351170 Msa0463090:intron 25.0%
! AATTCCTTCATCATGTATTA+TGG + chr3_3:62351158-62351177 None:intergenic 25.0%
!!! TTCATGTATTTTTTATGAGG+TGG + chr3_3:62351299-62351318 None:intergenic 25.0%
! ACCTCATAAAAAATACATGA+AGG - chr3_3:62351298-62351317 Msa0463090:CDS 25.0%
!!! TCCTTCATGTATTTTTTATG+AGG + chr3_3:62351302-62351321 None:intergenic 25.0%
! GGTACTAATATGTAATGTTA+TGG - chr3_3:62351372-62351391 Msa0463090:CDS 25.0%
! AAACATGAACTCAACAATTA+GGG + chr3_3:62351709-62351728 None:intergenic 25.0%
! TAAACATGAACTCAACAATT+AGG + chr3_3:62351710-62351729 None:intergenic 25.0%
! ATGGTAGTTTATCAAAATCA+CGG + chr3_3:62351766-62351785 None:intergenic 25.0%
! ATTATCTTCAACAAAGATCT+TGG - chr3_3:62351983-62352002 Msa0463090:intron 25.0%
! ACTGCACATAAAAAATGATA+AGG + chr3_3:62352106-62352125 None:intergenic 25.0%
!!! TTATCATTTTTTATGTGCAG+TGG - chr3_3:62352105-62352124 Msa0463090:CDS 25.0%
! TAAAATAAAACCCACAAAGT+TGG + chr3_3:62352263-62352282 None:intergenic 25.0%
!!! TTTCCCTTTTTTGTATGTAA+AGG - chr3_3:62352308-62352327 Msa0463090:CDS 25.0%
! CATCCTTTACATACAAAAAA+GGG + chr3_3:62352314-62352333 None:intergenic 25.0%
! ACATCCTTTACATACAAAAA+AGG + chr3_3:62352315-62352334 None:intergenic 25.0%
! GTGTTATGATTATTATTAGG+TGG - chr3_3:62352347-62352366 Msa0463090:CDS 25.0%
!!! GTTTTCCATTACTTTTAAGT+TGG - chr3_3:62352393-62352412 Msa0463090:CDS 25.0%
! TAAAGAACAAGATGTTTCAT+TGG - chr3_3:62350454-62350473 Msa0463090:three_prime_UTR 25.0%
! AAAGAACAAGATGTTTCATT+GGG - chr3_3:62350455-62350474 Msa0463090:three_prime_UTR 25.0%
! ACTAAATTTCATGGTTACTA+GGG + chr3_3:62350813-62350832 None:intergenic 25.0%
! TACTAAATTTCATGGTTACT+AGG + chr3_3:62350814-62350833 None:intergenic 25.0%
!!! CTTTAGAACAAATTAGTACT+AGG + chr3_3:62350918-62350937 None:intergenic 25.0%
! ATTACCATAATACATGATGA+AGG - chr3_3:62351151-62351170 Msa0463090:intron 25.0%
! AATTCCTTCATCATGTATTA+TGG + chr3_3:62351158-62351177 None:intergenic 25.0%
!!! TTCATGTATTTTTTATGAGG+TGG + chr3_3:62351299-62351318 None:intergenic 25.0%
! ACCTCATAAAAAATACATGA+AGG - chr3_3:62351298-62351317 Msa0463090:CDS 25.0%
!!! TCCTTCATGTATTTTTTATG+AGG + chr3_3:62351302-62351321 None:intergenic 25.0%
! GGTACTAATATGTAATGTTA+TGG - chr3_3:62351372-62351391 Msa0463090:CDS 25.0%
! AAACATGAACTCAACAATTA+GGG + chr3_3:62351709-62351728 None:intergenic 25.0%
! TAAACATGAACTCAACAATT+AGG + chr3_3:62351710-62351729 None:intergenic 25.0%
! ATGGTAGTTTATCAAAATCA+CGG + chr3_3:62351766-62351785 None:intergenic 25.0%
! ATTATCTTCAACAAAGATCT+TGG - chr3_3:62351983-62352002 Msa0463090:intron 25.0%
! ACTGCACATAAAAAATGATA+AGG + chr3_3:62352106-62352125 None:intergenic 25.0%
!!! TTATCATTTTTTATGTGCAG+TGG - chr3_3:62352105-62352124 Msa0463090:CDS 25.0%
! TAAAATAAAACCCACAAAGT+TGG + chr3_3:62352263-62352282 None:intergenic 25.0%
!!! TTTCCCTTTTTTGTATGTAA+AGG - chr3_3:62352308-62352327 Msa0463090:CDS 25.0%
! CATCCTTTACATACAAAAAA+GGG + chr3_3:62352314-62352333 None:intergenic 25.0%
! ACATCCTTTACATACAAAAA+AGG + chr3_3:62352315-62352334 None:intergenic 25.0%
! GTGTTATGATTATTATTAGG+TGG - chr3_3:62352347-62352366 Msa0463090:CDS 25.0%
!!! GTTTTCCATTACTTTTAAGT+TGG - chr3_3:62352393-62352412 Msa0463090:CDS 25.0%
ATATGAATATTGAGTGGTTG+AGG + chr3_3:62350384-62350403 None:intergenic 30.0%
TGCTGAATATGAATATTGAG+TGG + chr3_3:62350390-62350409 None:intergenic 30.0%
GATGTAAAGAAACAGAAAAG+TGG + chr3_3:62350636-62350655 None:intergenic 30.0%
ATCACTATCTTGACTGTTAT+GGG - chr3_3:62350653-62350672 Msa0463090:CDS 30.0%
TGTAAAACTGTTGGTATTCA+AGG - chr3_3:62350698-62350717 Msa0463090:CDS 30.0%
! TTTTATGAGGTGGCTAATTA+CGG + chr3_3:62351289-62351308 None:intergenic 30.0%
ATATGTAATGTTATGGATGC+AGG - chr3_3:62351379-62351398 Msa0463090:CDS 30.0%
TATGTAATGTTATGGATGCA+GGG - chr3_3:62351380-62351399 Msa0463090:CDS 30.0%
ACTTTCTACACCAACAAAAA+TGG - chr3_3:62351541-62351560 Msa0463090:intron 30.0%
! ATTACTTGACTTGAAAGGAA+TGG + chr3_3:62352198-62352217 None:intergenic 30.0%
ATATGAATATTGAGTGGTTG+AGG + chr3_3:62350384-62350403 None:intergenic 30.0%
TGCTGAATATGAATATTGAG+TGG + chr3_3:62350390-62350409 None:intergenic 30.0%
GATGTAAAGAAACAGAAAAG+TGG + chr3_3:62350636-62350655 None:intergenic 30.0%
ATCACTATCTTGACTGTTAT+GGG - chr3_3:62350653-62350672 Msa0463090:CDS 30.0%
TGTAAAACTGTTGGTATTCA+AGG - chr3_3:62350698-62350717 Msa0463090:CDS 30.0%
! TTTTATGAGGTGGCTAATTA+CGG + chr3_3:62351289-62351308 None:intergenic 30.0%
ATATGTAATGTTATGGATGC+AGG - chr3_3:62351379-62351398 Msa0463090:CDS 30.0%
TATGTAATGTTATGGATGCA+GGG - chr3_3:62351380-62351399 Msa0463090:CDS 30.0%
ACTTTCTACACCAACAAAAA+TGG - chr3_3:62351541-62351560 Msa0463090:intron 30.0%
! ATTACTTGACTTGAAAGGAA+TGG + chr3_3:62352198-62352217 None:intergenic 30.0%
CATCACTATCTTGACTGTTA+TGG - chr3_3:62350652-62350671 Msa0463090:CDS 35.0%
GAGTCTAAGTGTAAAACTGT+TGG - chr3_3:62350689-62350708 Msa0463090:CDS 35.0%
TTGGTATTCAAGGAATTGCT+TGG - chr3_3:62350708-62350727 Msa0463090:CDS 35.0%
ATTCCACTAAGAATCCAACT+CGG - chr3_3:62351037-62351056 Msa0463090:intron 35.0%
! GATGAAGGAATTGATAACCT+AGG - chr3_3:62351166-62351185 Msa0463090:intron 35.0%
TTTAGCAACTAGACAAACCT+AGG + chr3_3:62351186-62351205 None:intergenic 35.0%
TTTGTCTAGTTGCTAAAACC+CGG - chr3_3:62351189-62351208 Msa0463090:CDS 35.0%
ATGTAATGTTATGGATGCAG+GGG - chr3_3:62351381-62351400 Msa0463090:CDS 35.0%
TTCTACACCAACAAAAATGG+TGG - chr3_3:62351544-62351563 Msa0463090:intron 35.0%
!! TTAGGGCATGTTTGTTATCA+TGG + chr3_3:62351785-62351804 None:intergenic 35.0%
AAAAATACAGCGAACCCAAT+TGG + chr3_3:62351896-62351915 None:intergenic 35.0%
! AATTGGGTTCGCTGTATTTT+TGG - chr3_3:62351895-62351914 Msa0463090:intron 35.0%
TCTTCAACAAAGATCTTGGT+TGG - chr3_3:62351987-62352006 Msa0463090:intron 35.0%
!! TTTATGTGCAGTGGATTTTC+TGG - chr3_3:62352114-62352133 Msa0463090:CDS 35.0%
!! TTATGTGCAGTGGATTTTCT+GGG - chr3_3:62352115-62352134 Msa0463090:CDS 35.0%
CATCAAAGATCATAAACCGT+TGG + chr3_3:62352230-62352249 None:intergenic 35.0%
CAAAACTAAGCCAACTTTGT+GGG - chr3_3:62352250-62352269 Msa0463090:CDS 35.0%
CATCACTATCTTGACTGTTA+TGG - chr3_3:62350652-62350671 Msa0463090:CDS 35.0%
GAGTCTAAGTGTAAAACTGT+TGG - chr3_3:62350689-62350708 Msa0463090:CDS 35.0%
TTGGTATTCAAGGAATTGCT+TGG - chr3_3:62350708-62350727 Msa0463090:CDS 35.0%
ATTCCACTAAGAATCCAACT+CGG - chr3_3:62351037-62351056 Msa0463090:intron 35.0%
! GATGAAGGAATTGATAACCT+AGG - chr3_3:62351166-62351185 Msa0463090:intron 35.0%
TTTAGCAACTAGACAAACCT+AGG + chr3_3:62351186-62351205 None:intergenic 35.0%
TTTGTCTAGTTGCTAAAACC+CGG - chr3_3:62351189-62351208 Msa0463090:CDS 35.0%
ATGTAATGTTATGGATGCAG+GGG - chr3_3:62351381-62351400 Msa0463090:CDS 35.0%
TTCTACACCAACAAAAATGG+TGG - chr3_3:62351544-62351563 Msa0463090:intron 35.0%
!! TTAGGGCATGTTTGTTATCA+TGG + chr3_3:62351785-62351804 None:intergenic 35.0%
AAAAATACAGCGAACCCAAT+TGG + chr3_3:62351896-62351915 None:intergenic 35.0%
! AATTGGGTTCGCTGTATTTT+TGG - chr3_3:62351895-62351914 Msa0463090:intron 35.0%
TCTTCAACAAAGATCTTGGT+TGG - chr3_3:62351987-62352006 Msa0463090:intron 35.0%
!! TTTATGTGCAGTGGATTTTC+TGG - chr3_3:62352114-62352133 Msa0463090:CDS 35.0%
!! TTATGTGCAGTGGATTTTCT+GGG - chr3_3:62352115-62352134 Msa0463090:CDS 35.0%
CATCAAAGATCATAAACCGT+TGG + chr3_3:62352230-62352249 None:intergenic 35.0%
CAAAACTAAGCCAACTTTGT+GGG - chr3_3:62352250-62352269 Msa0463090:CDS 35.0%
TCAACAAAGAGAGTGAGCTA+TGG - chr3_3:62350427-62350446 Msa0463090:three_prime_UTR 40.0%
TACCAATTGGTTGTCTCTCT+GGG + chr3_3:62350493-62350512 None:intergenic 40.0%
ATACCAATTGGTTGTCTCTC+TGG + chr3_3:62350494-62350513 None:intergenic 40.0%
!! CAAGGAATTGCTTGGTCTTT+TGG - chr3_3:62350716-62350735 Msa0463090:CDS 40.0%
ATACATACCAGAGATACCAG+CGG + chr3_3:62350771-62350790 None:intergenic 40.0%
! AATCCGAGTTGGATTCTTAG+TGG + chr3_3:62351043-62351062 None:intergenic 40.0%
!!! TAGTTTTGGAGAATCCGAGT+TGG + chr3_3:62351054-62351073 None:intergenic 40.0%
GAGTTGAACTCAAACCCTTA+CGG + chr3_3:62351223-62351242 None:intergenic 40.0%
GTAACTTTCTCTGAGTCTTG+AGG - chr3_3:62351254-62351273 Msa0463090:CDS 40.0%
TGTAATGTTATGGATGCAGG+GGG - chr3_3:62351382-62351401 Msa0463090:CDS 40.0%
ATAAACCCAGCAGTGACATT+CGG - chr3_3:62351409-62351428 Msa0463090:CDS 40.0%
! AGTGACATTCGGTTTGTTCT+TGG - chr3_3:62351420-62351439 Msa0463090:CDS 40.0%
!! GTTAGCACCACCATTTTTGT+TGG + chr3_3:62351554-62351573 None:intergenic 40.0%
ATCACCTTTAGTGTAACCAG+GGG + chr3_3:62351584-62351603 None:intergenic 40.0%
CATCACCTTTAGTGTAACCA+GGG + chr3_3:62351585-62351604 None:intergenic 40.0%
!! TACACTAAAGGTGATGGACT+TGG - chr3_3:62351589-62351608 Msa0463090:intron 40.0%
CTCAACAATTAGGGACATAC+AGG + chr3_3:62351700-62351719 None:intergenic 40.0%
!!! CGCTGTATTTTTGGTGCATT+TGG - chr3_3:62351904-62351923 Msa0463090:intron 40.0%
TGATACCAGTTCCAGTGATT+GGG + chr3_3:62351937-62351956 None:intergenic 40.0%
TTGATACCAGTTCCAGTGAT+TGG + chr3_3:62351938-62351957 None:intergenic 40.0%
GCAAAACTAAGCCAACTTTG+TGG - chr3_3:62352249-62352268 Msa0463090:CDS 40.0%
AACAATTACCCCACACACAT+GGG + chr3_3:62352439-62352458 None:intergenic 40.0%
TAACAATTACCCCACACACA+TGG + chr3_3:62352440-62352459 None:intergenic 40.0%
TCAACAAAGAGAGTGAGCTA+TGG - chr3_3:62350427-62350446 Msa0463090:three_prime_UTR 40.0%
TACCAATTGGTTGTCTCTCT+GGG + chr3_3:62350493-62350512 None:intergenic 40.0%
ATACCAATTGGTTGTCTCTC+TGG + chr3_3:62350494-62350513 None:intergenic 40.0%
!! CAAGGAATTGCTTGGTCTTT+TGG - chr3_3:62350716-62350735 Msa0463090:CDS 40.0%
ATACATACCAGAGATACCAG+CGG + chr3_3:62350771-62350790 None:intergenic 40.0%
! AATCCGAGTTGGATTCTTAG+TGG + chr3_3:62351043-62351062 None:intergenic 40.0%
!!! TAGTTTTGGAGAATCCGAGT+TGG + chr3_3:62351054-62351073 None:intergenic 40.0%
GAGTTGAACTCAAACCCTTA+CGG + chr3_3:62351223-62351242 None:intergenic 40.0%
GTAACTTTCTCTGAGTCTTG+AGG - chr3_3:62351254-62351273 Msa0463090:CDS 40.0%
TGTAATGTTATGGATGCAGG+GGG - chr3_3:62351382-62351401 Msa0463090:CDS 40.0%
ATAAACCCAGCAGTGACATT+CGG - chr3_3:62351409-62351428 Msa0463090:CDS 40.0%
! AGTGACATTCGGTTTGTTCT+TGG - chr3_3:62351420-62351439 Msa0463090:CDS 40.0%
!! GTTAGCACCACCATTTTTGT+TGG + chr3_3:62351554-62351573 None:intergenic 40.0%
ATCACCTTTAGTGTAACCAG+GGG + chr3_3:62351584-62351603 None:intergenic 40.0%
CATCACCTTTAGTGTAACCA+GGG + chr3_3:62351585-62351604 None:intergenic 40.0%
!! TACACTAAAGGTGATGGACT+TGG - chr3_3:62351589-62351608 Msa0463090:intron 40.0%
CTCAACAATTAGGGACATAC+AGG + chr3_3:62351700-62351719 None:intergenic 40.0%
!!! CGCTGTATTTTTGGTGCATT+TGG - chr3_3:62351904-62351923 Msa0463090:intron 40.0%
TGATACCAGTTCCAGTGATT+GGG + chr3_3:62351937-62351956 None:intergenic 40.0%
TTGATACCAGTTCCAGTGAT+TGG + chr3_3:62351938-62351957 None:intergenic 40.0%
GCAAAACTAAGCCAACTTTG+TGG - chr3_3:62352249-62352268 Msa0463090:CDS 40.0%
AACAATTACCCCACACACAT+GGG + chr3_3:62352439-62352458 None:intergenic 40.0%
TAACAATTACCCCACACACA+TGG + chr3_3:62352440-62352459 None:intergenic 40.0%
ACAAAGAGAGTGAGCTATGG+AGG - chr3_3:62350430-62350449 Msa0463090:three_prime_UTR 45.0%
TTCCCAGAGAGACAACCAAT+TGG - chr3_3:62350488-62350507 Msa0463090:three_prime_UTR 45.0%
CTCTGAGCTGCAATACCAAT+TGG + chr3_3:62350506-62350525 None:intergenic 45.0%
TGTAGTCCTTGCCATCATCA+TGG + chr3_3:62350529-62350548 None:intergenic 45.0%
!! TGATGATGGCAAGGACTACA+AGG - chr3_3:62350529-62350548 Msa0463090:three_prime_UTR 45.0%
AGCTCAGAAGGCTCAAACAA+TGG + chr3_3:62350569-62350588 None:intergenic 45.0%
AGCCTTCTGAGCTTACTTCA+TGG - chr3_3:62350576-62350595 Msa0463090:three_prime_UTR 45.0%
GACCATGAAGTAAGCTCAGA+AGG + chr3_3:62350581-62350600 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG - chr3_3:62350593-62350612 Msa0463090:three_prime_UTR 45.0%
CATGGTCTTTCTACAGAGCT+GGG - chr3_3:62350594-62350613 Msa0463090:three_prime_UTR 45.0%
!! GGAATTGCTTGGTCTTTTGG+TGG - chr3_3:62350719-62350738 Msa0463090:CDS 45.0%
ACCAGCGGTACAGTAAACAA+GGG + chr3_3:62350756-62350775 None:intergenic 45.0%
TACCAGCGGTACAGTAAACA+AGG + chr3_3:62350757-62350776 None:intergenic 45.0%
ACAAACCGAATGTCACTGCT+GGG + chr3_3:62351417-62351436 None:intergenic 45.0%
AACAAACCGAATGTCACTGC+TGG + chr3_3:62351418-62351437 None:intergenic 45.0%
! CATTCGGTTTGTTCTTGGCA+AGG - chr3_3:62351425-62351444 Msa0463090:CDS 45.0%
!! GACCAGAGCTTTGTTCTACA+TGG - chr3_3:62351459-62351478 Msa0463090:intron 45.0%
CACCATGTAGAACAAAGCTC+TGG + chr3_3:62351464-62351483 None:intergenic 45.0%
! TACATGGTGATGCAAACCCT+TGG - chr3_3:62351475-62351494 Msa0463090:intron 45.0%
! TGGTGTGGTTAAGGGTTTTG+AGG - chr3_3:62351513-62351532 Msa0463090:intron 45.0%
!! GGTGTGGTTAAGGGTTTTGA+GGG - chr3_3:62351514-62351533 Msa0463090:intron 45.0%
CCATCACCTTTAGTGTAACC+AGG + chr3_3:62351586-62351605 None:intergenic 45.0%
CCTGGTTACACTAAAGGTGA+TGG - chr3_3:62351583-62351602 Msa0463090:intron 45.0%
GACGGTGTAGACAAGAACAA+AGG + chr3_3:62351632-62351651 None:intergenic 45.0%
TTAGGGACATACAGGAACGT+GGG + chr3_3:62351692-62351711 None:intergenic 45.0%
ATTAGGGACATACAGGAACG+TGG + chr3_3:62351693-62351712 None:intergenic 45.0%
!!! ATTTTGGCTCCACTGCCAAT+TGG - chr3_3:62351878-62351897 Msa0463090:intron 45.0%
!!! TTTTGGCTCCACTGCCAATT+GGG - chr3_3:62351879-62351898 Msa0463090:intron 45.0%
AGTTCCAGTGATTGGGATAG+TGG + chr3_3:62351930-62351949 None:intergenic 45.0%
ACTATCCCAATCACTGGAAC+TGG - chr3_3:62351929-62351948 Msa0463090:intron 45.0%
! TTCTGGGTTGGACCATTCAT+TGG - chr3_3:62352131-62352150 Msa0463090:CDS 45.0%
TTATTAGGTGGTGAGTGCGT+TGG - chr3_3:62352359-62352378 Msa0463090:CDS 45.0%
TATTAGGTGGTGAGTGCGTT+GGG - chr3_3:62352360-62352379 Msa0463090:CDS 45.0%
GAGTGGTTGAGGTTTGTGAT+TGG + chr3_3:62350373-62350392 None:intergenic 45.0%
ACAAAGAGAGTGAGCTATGG+AGG - chr3_3:62350430-62350449 Msa0463090:three_prime_UTR 45.0%
TTCCCAGAGAGACAACCAAT+TGG - chr3_3:62350488-62350507 Msa0463090:three_prime_UTR 45.0%
CTCTGAGCTGCAATACCAAT+TGG + chr3_3:62350506-62350525 None:intergenic 45.0%
TGTAGTCCTTGCCATCATCA+TGG + chr3_3:62350529-62350548 None:intergenic 45.0%
!! TGATGATGGCAAGGACTACA+AGG - chr3_3:62350529-62350548 Msa0463090:three_prime_UTR 45.0%
AGCTCAGAAGGCTCAAACAA+TGG + chr3_3:62350569-62350588 None:intergenic 45.0%
AGCCTTCTGAGCTTACTTCA+TGG - chr3_3:62350576-62350595 Msa0463090:three_prime_UTR 45.0%
GACCATGAAGTAAGCTCAGA+AGG + chr3_3:62350581-62350600 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG - chr3_3:62350593-62350612 Msa0463090:three_prime_UTR 45.0%
CATGGTCTTTCTACAGAGCT+GGG - chr3_3:62350594-62350613 Msa0463090:three_prime_UTR 45.0%
!! GGAATTGCTTGGTCTTTTGG+TGG - chr3_3:62350719-62350738 Msa0463090:CDS 45.0%
ACCAGCGGTACAGTAAACAA+GGG + chr3_3:62350756-62350775 None:intergenic 45.0%
TACCAGCGGTACAGTAAACA+AGG + chr3_3:62350757-62350776 None:intergenic 45.0%
ACAAACCGAATGTCACTGCT+GGG + chr3_3:62351417-62351436 None:intergenic 45.0%
AACAAACCGAATGTCACTGC+TGG + chr3_3:62351418-62351437 None:intergenic 45.0%
! CATTCGGTTTGTTCTTGGCA+AGG - chr3_3:62351425-62351444 Msa0463090:CDS 45.0%
!! GACCAGAGCTTTGTTCTACA+TGG - chr3_3:62351459-62351478 Msa0463090:intron 45.0%
CACCATGTAGAACAAAGCTC+TGG + chr3_3:62351464-62351483 None:intergenic 45.0%
! TACATGGTGATGCAAACCCT+TGG - chr3_3:62351475-62351494 Msa0463090:intron 45.0%
! TGGTGTGGTTAAGGGTTTTG+AGG - chr3_3:62351513-62351532 Msa0463090:intron 45.0%
!! GGTGTGGTTAAGGGTTTTGA+GGG - chr3_3:62351514-62351533 Msa0463090:intron 45.0%
CCATCACCTTTAGTGTAACC+AGG + chr3_3:62351586-62351605 None:intergenic 45.0%
CCTGGTTACACTAAAGGTGA+TGG - chr3_3:62351583-62351602 Msa0463090:intron 45.0%
GACGGTGTAGACAAGAACAA+AGG + chr3_3:62351632-62351651 None:intergenic 45.0%
TTAGGGACATACAGGAACGT+GGG + chr3_3:62351692-62351711 None:intergenic 45.0%
ATTAGGGACATACAGGAACG+TGG + chr3_3:62351693-62351712 None:intergenic 45.0%
!!! ATTTTGGCTCCACTGCCAAT+TGG - chr3_3:62351878-62351897 Msa0463090:intron 45.0%
!!! TTTTGGCTCCACTGCCAATT+GGG - chr3_3:62351879-62351898 Msa0463090:intron 45.0%
AGTTCCAGTGATTGGGATAG+TGG + chr3_3:62351930-62351949 None:intergenic 45.0%
ACTATCCCAATCACTGGAAC+TGG - chr3_3:62351929-62351948 Msa0463090:intron 45.0%
! TTCTGGGTTGGACCATTCAT+TGG - chr3_3:62352131-62352150 Msa0463090:CDS 45.0%
TTATTAGGTGGTGAGTGCGT+TGG - chr3_3:62352359-62352378 Msa0463090:CDS 45.0%
TATTAGGTGGTGAGTGCGTT+GGG - chr3_3:62352360-62352379 Msa0463090:CDS 45.0%
!!! TTAATTATAATACTTTTATT+TGG - chr3_3:62351329-62351348 Msa0463090:CDS 5.0%
!!! ATATATTTTAATTTCAATTA+GGG + chr3_3:62351802-62351821 None:intergenic 5.0%
!!! AATATATTTTAATTTCAATT+AGG + chr3_3:62351803-62351822 None:intergenic 5.0%
!!! TTAATTATAATACTTTTATT+TGG - chr3_3:62351329-62351348 Msa0463090:CDS 5.0%
!!! ATATATTTTAATTTCAATTA+GGG + chr3_3:62351802-62351821 None:intergenic 5.0%
!!! AATATATTTTAATTTCAATT+AGG + chr3_3:62351803-62351822 None:intergenic 5.0%
!! TCAGAGCCATGATGATGGCA+AGG - chr3_3:62350520-62350539 Msa0463090:three_prime_UTR 50.0%
!! TCAAACAATGGTGCTGGTGG+TGG + chr3_3:62350557-62350576 None:intergenic 50.0%
GAAGGCTCAAACAATGGTGC+TGG + chr3_3:62350563-62350582 None:intergenic 50.0%
TACTGTACCGCTGGTATCTC+TGG - chr3_3:62350761-62350780 Msa0463090:intron 50.0%
AACCCTTACGGAGTATGAGC+CGG + chr3_3:62351211-62351230 None:intergenic 50.0%
!! CAAACCCTTGGTGCTATCTG+TGG - chr3_3:62351487-62351506 Msa0463090:intron 50.0%
AGCACCACAGATAGCACCAA+GGG + chr3_3:62351494-62351513 None:intergenic 50.0%
!! TGTGGTGCTGGTGTGGTTAA+GGG - chr3_3:62351505-62351524 Msa0463090:intron 50.0%
GTTGCCCCTGGTTACACTAA+AGG - chr3_3:62351577-62351596 Msa0463090:intron 50.0%
!! GGACTTGGTGCTGAGATTGT+TGG - chr3_3:62351604-62351623 Msa0463090:intron 50.0%
TTGGCCACTATCCCAATCAC+TGG - chr3_3:62351923-62351942 Msa0463090:intron 50.0%
GAACTGGTATCAACCCTGCT+AGG - chr3_3:62351945-62351964 Msa0463090:intron 50.0%
ATCAACCCTGCTAGGAGTCT+TGG - chr3_3:62351953-62351972 Msa0463090:intron 50.0%
!! GTGCAGTGGATTTTCTGGGT+TGG - chr3_3:62352119-62352138 Msa0463090:CDS 50.0%
! GCAAGTGCTGCACCAATGAA+TGG + chr3_3:62352146-62352165 None:intergenic 50.0%
!! TGGCTCTGATCACAACTGTG+TGG + chr3_3:62352178-62352197 None:intergenic 50.0%
ACAAACCCTACCCATGTGTG+TGG - chr3_3:62352426-62352445 Msa0463090:five_prime_UTR 50.0%
CAAACCCTACCCATGTGTGT+GGG - chr3_3:62352427-62352446 Msa0463090:five_prime_UTR 50.0%
AAACCCTACCCATGTGTGTG+GGG - chr3_3:62352428-62352447 Msa0463090:five_prime_UTR 50.0%
TTACCCCACACACATGGGTA+GGG + chr3_3:62352434-62352453 None:intergenic 50.0%
ATTACCCCACACACATGGGT+AGG + chr3_3:62352435-62352454 None:intergenic 50.0%
!! TCAGAGCCATGATGATGGCA+AGG - chr3_3:62350520-62350539 Msa0463090:three_prime_UTR 50.0%
!! TCAAACAATGGTGCTGGTGG+TGG + chr3_3:62350557-62350576 None:intergenic 50.0%
GAAGGCTCAAACAATGGTGC+TGG + chr3_3:62350563-62350582 None:intergenic 50.0%
TACTGTACCGCTGGTATCTC+TGG - chr3_3:62350761-62350780 Msa0463090:intron 50.0%
AACCCTTACGGAGTATGAGC+CGG + chr3_3:62351211-62351230 None:intergenic 50.0%
!! CAAACCCTTGGTGCTATCTG+TGG - chr3_3:62351487-62351506 Msa0463090:intron 50.0%
AGCACCACAGATAGCACCAA+GGG + chr3_3:62351494-62351513 None:intergenic 50.0%
!! TGTGGTGCTGGTGTGGTTAA+GGG - chr3_3:62351505-62351524 Msa0463090:intron 50.0%
GTTGCCCCTGGTTACACTAA+AGG - chr3_3:62351577-62351596 Msa0463090:intron 50.0%
!! GGACTTGGTGCTGAGATTGT+TGG - chr3_3:62351604-62351623 Msa0463090:intron 50.0%
TTGGCCACTATCCCAATCAC+TGG - chr3_3:62351923-62351942 Msa0463090:intron 50.0%
GAACTGGTATCAACCCTGCT+AGG - chr3_3:62351945-62351964 Msa0463090:intron 50.0%
ATCAACCCTGCTAGGAGTCT+TGG - chr3_3:62351953-62351972 Msa0463090:intron 50.0%
!! GTGCAGTGGATTTTCTGGGT+TGG - chr3_3:62352119-62352138 Msa0463090:CDS 50.0%
! GCAAGTGCTGCACCAATGAA+TGG + chr3_3:62352146-62352165 None:intergenic 50.0%
!! TGGCTCTGATCACAACTGTG+TGG + chr3_3:62352178-62352197 None:intergenic 50.0%
ACAAACCCTACCCATGTGTG+TGG - chr3_3:62352426-62352445 Msa0463090:five_prime_UTR 50.0%
CAAACCCTACCCATGTGTGT+GGG - chr3_3:62352427-62352446 Msa0463090:five_prime_UTR 50.0%
AAACCCTACCCATGTGTGTG+GGG - chr3_3:62352428-62352447 Msa0463090:five_prime_UTR 50.0%
TTACCCCACACACATGGGTA+GGG + chr3_3:62352434-62352453 None:intergenic 50.0%
ATTACCCCACACACATGGGT+AGG + chr3_3:62352435-62352454 None:intergenic 50.0%
GCAGCTCAGAGCCATGATGA+TGG - chr3_3:62350515-62350534 Msa0463090:three_prime_UTR 55.0%
! GGCTCAAACAATGGTGCTGG+TGG + chr3_3:62350560-62350579 None:intergenic 55.0%
! GCCCTTGTTTACTGTACCGC+TGG - chr3_3:62350752-62350771 Msa0463090:intron 55.0%
AACCCGGCTCATACTCCGTA+AGG - chr3_3:62351205-62351224 Msa0463090:CDS 55.0%
ACCCGGCTCATACTCCGTAA+GGG - chr3_3:62351206-62351225 Msa0463090:CDS 55.0%
ACCCTTACGGAGTATGAGCC+GGG + chr3_3:62351210-62351229 None:intergenic 55.0%
CAGCACCACAGATAGCACCA+AGG + chr3_3:62351495-62351514 None:intergenic 55.0%
!! CTTGGTGCTATCTGTGGTGC+TGG - chr3_3:62351493-62351512 Msa0463090:intron 55.0%
!! TGCTATCTGTGGTGCTGGTG+TGG - chr3_3:62351498-62351517 Msa0463090:intron 55.0%
!! CTGTGGTGCTGGTGTGGTTA+AGG - chr3_3:62351504-62351523 Msa0463090:intron 55.0%
GGTGCTAACTTTGTTGCCCC+TGG - chr3_3:62351565-62351584 Msa0463090:intron 55.0%
TACAGGAACGTGGGAGTCTC+TGG + chr3_3:62351683-62351702 None:intergenic 55.0%
ACAGCGAACCCAATTGGCAG+TGG + chr3_3:62351890-62351909 None:intergenic 55.0%
CAGCACCAAGACTCCTAGCA+GGG + chr3_3:62351961-62351980 None:intergenic 55.0%
TGGTGAGTGCGTTGGGTGAT+GGG - chr3_3:62352367-62352386 Msa0463090:CDS 55.0%
GCAGCTCAGAGCCATGATGA+TGG - chr3_3:62350515-62350534 Msa0463090:three_prime_UTR 55.0%
! GGCTCAAACAATGGTGCTGG+TGG + chr3_3:62350560-62350579 None:intergenic 55.0%
! GCCCTTGTTTACTGTACCGC+TGG - chr3_3:62350752-62350771 Msa0463090:intron 55.0%
AACCCGGCTCATACTCCGTA+AGG - chr3_3:62351205-62351224 Msa0463090:CDS 55.0%
ACCCGGCTCATACTCCGTAA+GGG - chr3_3:62351206-62351225 Msa0463090:CDS 55.0%
ACCCTTACGGAGTATGAGCC+GGG + chr3_3:62351210-62351229 None:intergenic 55.0%
CAGCACCACAGATAGCACCA+AGG + chr3_3:62351495-62351514 None:intergenic 55.0%
!! CTTGGTGCTATCTGTGGTGC+TGG - chr3_3:62351493-62351512 Msa0463090:intron 55.0%
!! TGCTATCTGTGGTGCTGGTG+TGG - chr3_3:62351498-62351517 Msa0463090:intron 55.0%
!! CTGTGGTGCTGGTGTGGTTA+AGG - chr3_3:62351504-62351523 Msa0463090:intron 55.0%
GGTGCTAACTTTGTTGCCCC+TGG - chr3_3:62351565-62351584 Msa0463090:intron 55.0%
TACAGGAACGTGGGAGTCTC+TGG + chr3_3:62351683-62351702 None:intergenic 55.0%
ACAGCGAACCCAATTGGCAG+TGG + chr3_3:62351890-62351909 None:intergenic 55.0%
CAGCACCAAGACTCCTAGCA+GGG + chr3_3:62351961-62351980 None:intergenic 55.0%
TGGTGAGTGCGTTGGGTGAT+GGG - chr3_3:62352367-62352386 Msa0463090:CDS 55.0%
! GGCATCAGTGGCGGAGAAGA+CGG + chr3_3:62351650-62351669 None:intergenic 60.0%
GCTACGCTTGGCATCAGTGG+CGG + chr3_3:62351659-62351678 None:intergenic 60.0%
GCAGCACCAAGACTCCTAGC+AGG + chr3_3:62351962-62351981 None:intergenic 60.0%
GTGGTGAGTGCGTTGGGTGA+TGG - chr3_3:62352366-62352385 Msa0463090:CDS 60.0%
! GGCATCAGTGGCGGAGAAGA+CGG + chr3_3:62351650-62351669 None:intergenic 60.0%
GCTACGCTTGGCATCAGTGG+CGG + chr3_3:62351659-62351678 None:intergenic 60.0%
GCAGCACCAAGACTCCTAGC+AGG + chr3_3:62351962-62351981 None:intergenic 60.0%
GTGGTGAGTGCGTTGGGTGA+TGG - chr3_3:62352366-62352385 Msa0463090:CDS 60.0%
GGCGCTACGCTTGGCATCAG+TGG + chr3_3:62351662-62351681 None:intergenic 65.0%
GGAGTCTCTGGCGCTACGCT+TGG + chr3_3:62351671-62351690 None:intergenic 65.0%
GGCGCTACGCTTGGCATCAG+TGG + chr3_3:62351662-62351681 None:intergenic 65.0%
GGAGTCTCTGGCGCTACGCT+TGG + chr3_3:62351671-62351690 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 62350373 62352498 62350373 ID=Msa0463090;Name=Msa0463090
chr3_3 mRNA 62350373 62352498 62350373 ID=Msa0463090-mRNA-1;Parent=Msa0463090;Name=Msa0463090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=73|1|1|1|1|1|4|278|290
chr3_3 exon 62350373 62350746 62350373 ID=Msa0463090-mRNA-1:exon:13321;Parent=Msa0463090-mRNA-1
chr3_3 exon 62350853 62350993 62350853 ID=Msa0463090-mRNA-1:exon:13320;Parent=Msa0463090-mRNA-1
chr3_3 exon 62351172 62351470 62351172 ID=Msa0463090-mRNA-1:exon:13319;Parent=Msa0463090-mRNA-1
chr3_3 exon 62352089 62352498 62352089 ID=Msa0463090-mRNA-1:exon:13318;Parent=Msa0463090-mRNA-1
chr3_3 five_prime_UTR 62352426 62352498 62352426 ID=Msa0463090-mRNA-1:five_prime_utr;Parent=Msa0463090-mRNA-1
chr3_3 CDS 62352089 62352425 62352089 ID=Msa0463090-mRNA-1:cds;Parent=Msa0463090-mRNA-1
chr3_3 CDS 62351172 62351470 62351172 ID=Msa0463090-mRNA-1:cds;Parent=Msa0463090-mRNA-1
chr3_3 CDS 62350853 62350993 62350853 ID=Msa0463090-mRNA-1:cds;Parent=Msa0463090-mRNA-1
chr3_3 CDS 62350651 62350746 62350651 ID=Msa0463090-mRNA-1:cds;Parent=Msa0463090-mRNA-1
chr3_3 three_prime_UTR 62350373 62350650 62350373 ID=Msa0463090-mRNA-1:three_prime_utr;Parent=Msa0463090-mRNA-1
Gene Sequence

>Msa0463090

ATGGAGGCTAAAGAACAAGATGTTTCATTGGGAGCTAACAAATTCCCAGAGAGACAACCAATTGGTATTGCAGCTCAGAGCCATGATGATGGCAAGGACTACAAGGAACCACCACCAGCACCATTGTTTGAGCCTTCTGAGCTTACTTCATGGTCTTTCTACAGAGCTGGGATAGCTGAGTTTGTAGCCACTTTTCTGTTTCTTTACATCACTATCTTGACTGTTATGGGTGTTAACAGATCTGAGTCTAAGTGTAAAACTGTTGGTATTCAAGGAATTGCTTGGTCTTTTGGTGGCATGATCTTTGCCCTTGTTTACTGTACCGCTGGTATCTCTGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTCTTGGCAAGGAAATTGTCATTGACCAGAGCTTTGTTCTACATGGTGATGCAAACCCTTGGTGCTATCTGTGGTGCTGGTGTGGTTAAGGGTTTTGAGGGAAAGACTTTCTACACCAACAAAAATGGTGGTGCTAACTTTGTTGCCCCTGGTTACACTAAAGGTGATGGACTTGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACTGATGCCAAGCGTAGCGCCAGAGACTCCCACGTTCCTATTTTGGCTCCACTGCCAATTGGGTTCGCTGTATTTTTGGTGCATTTGGCCACTATCCCAATCACTGGAACTGGTATCAACCCTGCTAGGAGTCTTGGTGCTGCAATTATCTTCAACAAAGATCTTGGTTGGAATGATCACTGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTTGCAGCTCTTTACCACACAGTTGTGATCAGAGCCATTCCTTTCAAGTCAAGTAATTAA
Protein sequence

>Msa0463090

MEAKEQDVSLGANKFPERQPIGIAAQSHDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSESKCKTVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQTLGAICGAGVVKGFEGKTFYTNKNGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWNDHWIFWVGPFIGAALAALYHTVVIRAIPFKSSN*