AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0335890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335890 MtrunA17_Chr2g0321241 99.542 437 2 0 1 437 1 437 0.0 900
Msa0335890 MtrunA17_Chr4g0026631 91.304 437 33 1 1 437 1 432 0.0 813
Msa0335890 MtrunA17_Chr4g0052271 48.052 308 137 5 71 356 37 343 4.99e-88 277
Msa0335890 MtrunA17_Chr4g0004121 41.509 371 168 7 76 435 195 527 3.21e-87 279
Msa0335890 MtrunA17_Chr7g0246111 42.598 331 174 5 106 435 189 504 2.86e-77 252
Msa0335890 MtrunA17_Chr6g0459561 40.294 340 169 4 106 439 351 662 3.14e-73 245
Msa0335890 MtrunA17_Chr6g0459541 38.567 363 160 8 106 435 11 343 6.66e-70 228
Msa0335890 MtrunA17_Chr2g0297851 71.812 149 32 2 1 149 1 139 2.70e-64 211
Msa0335890 MtrunA17_Chr2g0297851 77.165 127 24 1 5 131 125 246 2.66e-55 187
Msa0335890 MtrunA17_Chr6g0459551 34.447 389 181 10 106 454 71 425 4.91e-58 199
Msa0335890 MtrunA17_Chr4g0038101 46.288 229 117 5 132 356 721 947 1.81e-57 207
Msa0335890 MtrunA17_Chr1g0202381 36.364 330 184 7 42 356 375 693 3.72e-57 204
Msa0335890 MtrunA17_Chr6g0462581 46.725 229 114 5 132 356 500 724 2.44e-56 202
Msa0335890 MtrunA17_Chr8g0387641 43.860 228 125 3 131 356 520 746 1.06e-55 201
Msa0335890 MtrunA17_Chr5g0397121 39.057 297 170 6 66 356 447 738 9.61e-55 197
Msa0335890 MtrunA17_Chr1g0195731 45.662 219 114 4 132 346 934 1151 5.28e-53 194
Msa0335890 MtrunA17_Chr1g0204031 43.119 218 118 4 132 345 557 772 2.17e-52 191
Msa0335890 MtrunA17_Chr1g0202371 41.667 228 127 4 132 356 397 621 8.18e-52 188
Msa0335890 MtrunA17_Chr1g0195741 44.545 220 115 5 132 346 938 1155 6.34e-51 188
Msa0335890 MtrunA17_Chr3g0116131 44.292 219 117 4 132 346 902 1119 6.52e-51 188
Msa0335890 MtrunA17_Chr6g0459531 32.911 316 156 6 121 435 56 316 1.50e-48 171
Msa0335890 MtrunA17_Chr3g0127401 40.870 230 129 5 131 356 80 306 3.87e-48 171
Msa0335890 MtrunA17_Chr3g0127431 40.343 233 132 5 131 359 83 312 4.96e-48 172
Msa0335890 MtrunA17_Chr1g0180791 42.920 226 121 6 126 345 472 695 7.33e-48 178
Msa0335890 MtrunA17_Chr1g0180791 37.607 234 138 6 132 361 205 434 6.75e-41 157
Msa0335890 MtrunA17_Chr2g0327121 42.982 228 118 7 126 345 474 697 7.97e-48 177
Msa0335890 MtrunA17_Chr2g0327121 36.325 234 141 6 132 361 207 436 1.42e-39 154
Msa0335890 MtrunA17_Chr7g0264521 42.478 226 122 6 126 345 473 696 1.14e-47 177
Msa0335890 MtrunA17_Chr7g0264521 37.143 245 142 7 125 361 195 435 1.56e-40 156
Msa0335890 MtrunA17_Chr7g0255641 39.300 257 148 6 110 360 634 888 1.11e-45 172
Msa0335890 MtrunA17_Chr7g0255641 39.683 189 101 6 156 342 425 602 5.85e-29 122
Msa0335890 MtrunA17_Chr7g0255721 38.911 257 149 6 110 360 661 915 1.66e-44 169
Msa0335890 MtrunA17_Chr7g0255721 38.119 202 113 4 169 360 422 621 1.69e-32 132
Msa0335890 MtrunA17_Chr3g0145011 38.115 244 137 9 125 359 131 369 6.41e-43 157
Msa0335890 MtrunA17_Chr4g0050561 39.167 240 133 8 121 351 145 380 1.61e-42 157
Msa0335890 MtrunA17_Chr3g0141901 37.705 244 138 9 125 359 128 366 1.64e-42 156
Msa0335890 MtrunA17_Chr7g0255651 37.344 241 144 5 121 356 271 509 5.70e-42 159
Msa0335890 MtrunA17_Chr7g0255651 28.571 224 145 7 145 360 30 246 4.27e-19 90.9
Msa0335890 MtrunA17_Chr7g0217421 40.773 233 122 9 121 343 26 252 6.75e-42 155
Msa0335890 MtrunA17_Chr7g0255691 38.783 263 150 7 110 364 262 521 6.72e-41 155
Msa0335890 MtrunA17_Chr7g0255691 31.897 232 133 8 137 355 22 241 1.40e-24 107
Msa0335890 MtrunA17_Chr8g0345461 37.903 248 134 9 112 347 145 384 1.17e-40 152
Msa0335890 MtrunA17_Chr8g0362771 38.034 234 134 7 131 360 236 462 1.65e-40 156
Msa0335890 MtrunA17_Chr4g0052411 37.895 285 161 9 120 396 215 491 2.60e-40 155
Msa0335890 MtrunA17_Chr4g0014731 37.555 229 133 7 126 347 162 387 6.55e-40 150
Msa0335890 MtrunA17_Chr1g0192151 37.555 229 133 7 126 347 161 386 6.70e-40 150
Msa0335890 MtrunA17_Chr2g0297281 43.049 223 115 8 129 343 281 499 1.46e-39 153
Msa0335890 MtrunA17_Chr1g0200081 37.652 247 135 9 112 347 155 393 3.83e-39 148
Msa0335890 MtrunA17_Chr7g0255901 36.481 233 130 4 130 351 637 862 1.38e-38 151
Msa0335890 MtrunA17_Chr7g0262801 34.328 268 152 9 126 372 181 445 4.03e-38 145
Msa0335890 MtrunA17_Chr1g0182711 33.955 268 153 9 126 372 182 446 7.43e-38 144
Msa0335890 MtrunA17_Chr3g0108321 39.896 193 110 4 128 315 155 346 1.66e-37 142
Msa0335890 MtrunA17_Chr7g0260601 41.202 233 123 8 129 351 237 465 2.10e-37 147
Msa0335890 MtrunA17_Chr7g0248361 42.478 226 112 9 132 345 192 411 2.30e-37 146
Msa0335890 MtrunA17_Chr4g0031821 41.631 233 122 8 129 351 317 545 4.51e-37 146
Msa0335890 MtrunA17_Chr6g0476861 41.964 224 116 8 132 345 197 416 7.57e-37 145
Msa0335890 MtrunA17_Chr2g0327231 42.442 172 94 4 122 289 335 505 7.44e-36 140
Msa0335890 MtrunA17_Chr3g0143721 38.961 231 131 7 132 356 249 475 8.38e-36 142
Msa0335890 MtrunA17_Chr2g0277831 36.842 228 134 7 130 351 531 754 1.68e-35 141
Msa0335890 MtrunA17_Chr2g0277831 38.251 183 106 4 166 343 277 457 3.99e-29 122
Msa0335890 MtrunA17_Chr6g0456351 36.800 250 142 8 122 361 304 547 3.77e-35 139
Msa0335890 MtrunA17_Chr3g0094871 41.071 224 119 8 131 345 10 229 8.57e-35 136
Msa0335890 MtrunA17_Chr1g0158881 39.914 233 124 10 121 346 318 541 9.07e-35 139
Msa0335890 MtrunA17_Chr3g0135761 36.818 220 130 7 131 346 221 435 2.97e-34 137
Msa0335890 MtrunA17_Chr5g0429571 38.136 236 135 5 131 358 312 544 5.18e-34 137
Msa0335890 MtrunA17_Chr5g0432631 36.818 220 130 7 131 346 228 442 1.25e-33 136
Msa0335890 MtrunA17_Chr3g0086411 39.153 189 104 5 130 312 213 396 2.18e-33 133
Msa0335890 MtrunA17_Chr3g0086411 36.496 137 77 4 219 346 7 142 1.27e-15 79.7
Msa0335890 MtrunA17_Chr2g0331161 39.474 228 118 7 131 347 414 632 3.96e-33 134
Msa0335890 MtrunA17_Chr3g0135721 36.036 222 129 8 131 346 223 437 4.14e-33 134
Msa0335890 MtrunA17_Chr4g0033451 35.470 234 141 5 131 356 379 610 5.67e-33 134
Msa0335890 MtrunA17_Chr3g0104211 38.912 239 135 8 131 361 303 538 1.32e-32 132
Msa0335890 MtrunA17_Chr2g0316851 34.978 223 134 7 134 347 596 816 2.84e-32 132
Msa0335890 MtrunA17_Chr3g0086401 32.414 290 168 10 166 439 128 405 7.85e-32 130
Msa0335890 MtrunA17_Chr3g0086401 37.968 187 111 4 130 313 383 567 1.83e-30 126
Msa0335890 MtrunA17_Chr4g0043381 33.624 229 146 5 134 359 839 1064 1.79e-31 129
Msa0335890 MtrunA17_Chr2g0289231 34.855 241 136 9 120 347 285 517 7.18e-30 123
Msa0335890 MtrunA17_Chr3g0129971 34.629 283 170 6 116 390 282 557 4.38e-28 119
Msa0335890 MtrunA17_Chr3g0135781 39.877 163 92 5 131 291 54 212 7.48e-28 111
Msa0335890 MtrunA17_Chr8g0388371 31.321 265 163 8 132 381 404 664 4.31e-27 116
Msa0335890 MtrunA17_Chr5g0432641 32.273 220 140 7 131 346 190 404 3.99e-25 109
Msa0335890 MtrunA17_Chr8g0357301 31.944 216 129 7 159 362 497 706 6.69e-20 94.0
Msa0335890 MtrunA17_Chr4g0047411 30.769 208 126 7 157 347 200 406 1.13e-19 92.8
Msa0335890 MtrunA17_Chr1g0168321 38.776 147 78 6 208 345 203 346 6.11e-19 90.1
Msa0335890 MtrunA17_Chr1g0190401 30.806 211 132 8 108 311 657 860 5.54e-18 88.2
Msa0335890 MtrunA17_Chr3g0116941 34.161 161 88 4 169 312 197 356 5.93e-17 83.6
Msa0335890 MtrunA17_Chr5g0404291 26.641 259 163 5 114 349 334 588 1.04e-16 83.6
Msa0335890 MtrunA17_Chr4g0039781 27.404 208 122 5 167 349 368 571 2.37e-14 75.9
Msa0335890 MtrunA17_Chr6g0450161 27.053 207 123 5 167 349 362 564 3.17e-14 75.5
Msa0335890 MtrunA17_Chr4g0062081 40.506 79 45 2 135 211 10 88 6.91e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335890 AT2G27600.1 90.389 437 39 1 1 437 1 434 0.0 806
Msa0335890 AT1G80350.1 41.504 359 175 6 86 435 189 521 7.26e-88 281
Msa0335890 AT2G34560.2 42.042 333 165 6 110 440 87 393 2.00e-83 265
Msa0335890 AT2G45500.4 41.737 357 171 5 80 435 32 352 2.06e-83 263
Msa0335890 AT2G45500.3 41.737 357 171 5 80 435 32 352 2.06e-83 263
Msa0335890 AT2G34560.1 42.042 333 165 6 110 440 78 384 2.17e-83 265
Msa0335890 AT2G45500.2 41.737 357 171 5 80 435 165 485 1.07e-81 263
Msa0335890 AT2G45500.5 41.737 357 171 5 80 435 175 495 1.07e-81 264
Msa0335890 AT2G45500.1 41.737 357 171 5 80 435 169 489 1.24e-81 263
Msa0335890 AT3G27120.1 39.583 336 169 4 106 435 369 676 5.85e-71 240
Msa0335890 AT1G08270.1 75.758 132 22 1 33 164 1 122 1.35e-59 193
Msa0335890 AT1G08270.2 74.242 132 24 1 33 164 1 122 3.48e-58 190
Msa0335890 AT1G50140.3 47.826 230 112 5 132 356 711 937 5.78e-58 209
Msa0335890 AT1G50140.1 47.826 230 112 5 132 356 711 937 5.78e-58 209
Msa0335890 AT1G50140.4 47.826 230 112 5 132 356 711 937 5.78e-58 209
Msa0335890 AT1G50140.2 47.826 230 112 5 132 356 689 915 6.57e-58 208
Msa0335890 AT1G50140.5 47.826 230 112 5 132 356 689 915 6.57e-58 208
Msa0335890 AT3G19740.1 47.162 229 115 4 132 356 701 927 3.32e-57 206
Msa0335890 AT1G64110.2 44.635 233 122 4 128 356 514 743 1.01e-55 201
Msa0335890 AT1G64110.4 44.635 233 122 4 128 356 514 743 1.01e-55 201
Msa0335890 AT1G64110.1 44.635 233 122 4 128 356 509 738 1.04e-55 201
Msa0335890 AT1G64110.5 44.635 233 122 4 128 356 512 741 1.09e-55 201
Msa0335890 AT1G64110.3 44.635 233 122 4 128 356 512 741 1.09e-55 201
Msa0335890 AT4G28000.3 43.860 228 122 4 132 356 517 741 8.79e-55 198
Msa0335890 AT4G28000.1 43.860 228 122 4 132 356 515 739 1.25e-54 197
Msa0335890 AT4G28000.2 43.860 228 122 4 132 356 517 741 1.45e-54 197
Msa0335890 AT5G52882.1 43.860 228 122 4 132 356 514 738 2.49e-53 194
Msa0335890 AT5G53540.1 38.356 292 143 8 131 418 83 341 2.13e-52 184
Msa0335890 AT4G02480.1 44.105 229 122 5 132 356 960 1186 5.14e-52 192
Msa0335890 AT4G24860.4 43.966 232 121 5 121 346 779 1007 2.04e-51 190
Msa0335890 AT4G24860.2 43.966 232 121 5 121 346 802 1030 2.28e-51 190
Msa0335890 AT4G24860.3 43.966 232 121 5 121 346 804 1032 2.28e-51 190
Msa0335890 AT4G24860.1 43.966 232 121 5 121 346 806 1034 2.47e-51 189
Msa0335890 AT1G02890.1 44.156 231 119 7 132 356 941 1167 5.92e-51 189
Msa0335890 AT4G27680.1 38.014 292 144 8 131 418 80 338 1.28e-50 179
Msa0335890 AT3G53230.1 43.363 226 120 6 126 345 472 695 1.23e-48 181
Msa0335890 AT3G53230.1 37.179 234 139 6 132 361 205 434 4.28e-40 155
Msa0335890 AT5G03340.1 42.920 226 121 6 126 345 471 694 1.39e-48 180
Msa0335890 AT5G03340.1 37.179 234 139 6 132 361 204 433 3.70e-40 155
Msa0335890 AT3G09840.1 42.731 227 121 6 126 345 471 695 2.70e-46 174
Msa0335890 AT3G09840.1 37.021 235 140 6 131 361 203 433 2.02e-40 156
Msa0335890 AT3G56690.1 41.700 247 132 7 110 348 697 939 3.68e-44 168
Msa0335890 AT3G56690.1 36.224 196 121 3 166 359 416 609 2.39e-33 135
Msa0335890 AT5G43010.1 38.683 243 137 10 125 359 128 366 6.80e-44 160
Msa0335890 AT1G45000.1 38.776 245 134 11 125 359 128 366 4.35e-43 158
Msa0335890 AT5G19990.2 39.167 240 133 8 121 351 89 324 2.89e-42 155
Msa0335890 AT2G03670.1 42.060 233 117 6 121 342 272 497 4.21e-42 159
Msa0335890 AT2G03670.1 31.707 246 151 8 131 363 15 256 7.90e-28 118
Msa0335890 AT5G20000.1 39.167 240 133 8 121 351 147 382 9.19e-42 155
Msa0335890 AT5G19990.1 39.167 240 133 8 121 351 147 382 1.08e-41 155
Msa0335890 AT5G19990.3 39.167 240 133 8 121 351 147 382 1.08e-41 155
Msa0335890 AT1G06430.1 40.711 253 138 8 117 361 200 448 1.75e-41 159
Msa0335890 AT1G06430.3 40.711 253 138 8 117 361 200 448 1.75e-41 159
Msa0335890 AT1G06430.2 40.711 253 138 8 117 361 200 448 1.75e-41 159
Msa0335890 AT2G30950.1 39.921 253 140 8 117 361 207 455 3.98e-41 158
Msa0335890 AT2G30950.2 39.921 253 140 8 117 361 207 455 3.98e-41 158
Msa0335890 AT2G30950.3 39.921 253 140 8 117 361 207 455 3.98e-41 158
Msa0335890 AT2G30950.4 39.921 253 140 8 117 361 211 459 4.21e-41 158
Msa0335890 AT5G58290.1 37.553 237 139 6 128 358 148 381 1.51e-40 152
Msa0335890 AT1G53750.1 37.903 248 134 9 112 347 145 384 1.78e-40 152
Msa0335890 AT3G05530.1 37.991 229 132 7 126 347 162 387 2.83e-40 151
Msa0335890 AT3G02450.1 38.430 242 134 8 128 361 327 561 1.08e-39 153
Msa0335890 AT1G09100.1 37.719 228 134 6 126 347 161 386 1.21e-39 149
Msa0335890 AT4G29040.1 34.328 268 152 9 126 372 179 443 1.58e-38 147
Msa0335890 AT2G20140.1 34.328 268 152 9 126 372 179 443 2.27e-38 146
Msa0335890 AT1G03000.1 35.622 233 142 5 130 356 653 883 3.84e-38 150
Msa0335890 AT1G62130.2 38.182 220 117 7 132 346 743 948 5.35e-38 150
Msa0335890 AT1G62130.1 38.182 220 117 7 132 346 750 955 6.76e-38 149
Msa0335890 AT1G07510.1 40.984 244 130 8 118 351 310 549 1.73e-37 148
Msa0335890 AT5G42270.1 40.260 231 128 7 132 356 247 473 3.90e-37 146
Msa0335890 AT1G53780.1 36.290 248 138 9 112 347 317 556 6.16e-37 145
Msa0335890 AT1G53780.4 36.290 248 138 9 112 347 317 556 6.16e-37 145
Msa0335890 AT1G53780.3 35.918 245 143 8 112 347 316 555 6.28e-37 145
Msa0335890 AT1G53780.2 36.290 248 138 9 112 347 338 577 7.16e-37 145
Msa0335890 AT5G15250.1 36.508 252 144 9 120 361 207 452 7.45e-37 145
Msa0335890 AT1G50250.1 38.983 236 124 8 132 356 259 485 1.14e-35 142
Msa0335890 AT2G29080.1 41.949 236 126 8 118 345 305 537 1.46e-35 142
Msa0335890 AT1G02890.2 37.229 231 107 8 132 356 941 1139 1.07e-34 140
Msa0335890 AT5G53170.1 38.793 232 128 8 121 346 348 571 4.81e-34 137
Msa0335890 AT3G15120.2 34.802 227 137 6 134 351 728 952 5.13e-34 138
Msa0335890 AT3G15120.1 34.802 227 137 6 134 351 718 942 5.36e-34 138
Msa0335890 AT2G26140.1 36.364 220 131 7 131 346 223 437 1.34e-33 136
Msa0335890 AT3G47060.1 34.296 277 147 6 91 358 303 553 2.46e-33 135
Msa0335890 AT5G15250.2 33.818 275 143 10 120 361 207 475 2.82e-33 133
Msa0335890 AT3G16290.1 39.474 228 118 7 131 347 406 624 5.14e-33 134
Msa0335890 AT5G58870.1 37.179 234 140 5 131 358 325 557 1.38e-32 133
Msa0335890 AT1G05910.1 35.841 226 134 6 131 347 377 600 3.78e-32 132
Msa0335890 AT3G01610.1 36.957 230 135 7 130 354 523 747 2.00e-31 129
Msa0335890 AT3G01610.1 36.607 224 122 6 134 342 232 450 1.60e-30 127
Msa0335890 AT3G01610.2 36.957 230 135 7 130 354 523 747 2.89e-31 129
Msa0335890 AT3G01610.2 36.607 224 122 6 134 342 232 450 1.83e-30 127
Msa0335890 AT5G08470.1 31.449 283 169 8 134 411 843 1105 2.29e-30 127
Msa0335890 AT5G08470.3 31.449 283 169 8 134 411 834 1096 2.39e-30 127
Msa0335890 AT4G04180.2 34.956 226 128 8 132 345 311 529 5.25e-29 121
Msa0335890 AT4G04180.1 34.956 226 128 8 132 345 316 534 5.29e-29 121
Msa0335890 AT2G03670.2 31.707 246 151 8 131 363 15 256 2.06e-28 118
Msa0335890 AT2G03670.2 43.333 150 81 2 121 266 272 421 4.82e-26 111
Msa0335890 AT5G64580.1 34.783 253 155 4 115 359 298 548 7.04e-28 119
Msa0335890 AT1G45000.2 40.000 145 83 4 125 265 128 272 6.83e-27 112
Msa0335890 AT4G23940.1 33.061 245 146 7 132 362 427 667 9.45e-27 115
Msa0335890 AT1G79560.3 35.437 206 115 7 169 362 527 726 1.34e-23 105
Msa0335890 AT1G79560.2 35.437 206 115 7 169 362 527 726 1.34e-23 105
Msa0335890 AT1G79560.1 35.437 206 115 7 169 362 527 726 1.52e-23 105
Msa0335890 AT5G08470.2 37.584 149 86 4 134 279 843 987 4.73e-22 101
Msa0335890 AT4G04910.1 30.952 210 123 8 157 347 237 443 1.07e-18 90.5
Msa0335890 AT3G04340.1 31.746 189 119 7 130 311 779 964 6.97e-17 85.1
Msa0335890 AT4G24710.3 32.298 161 91 4 169 312 215 374 1.25e-15 80.1
Msa0335890 AT4G24710.1 32.298 161 91 4 169 312 203 362 1.27e-15 79.7
Msa0335890 AT4G36580.1 27.488 211 121 5 167 349 381 587 4.00e-14 75.9
Msa0335890 AT2G18330.1 27.103 214 121 5 167 349 384 593 7.22e-14 74.7
Msa0335890 AT3G03060.1 27.404 208 122 5 167 349 385 588 8.89e-14 74.7
Msa0335890 AT5G16930.1 26.923 208 123 5 167 349 397 600 1.57e-13 73.9

Find 146 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGAATTCTGCGATTATT+AGG 0.186943 2_4:-55112953 Msa0335890:CDS
CTGCAAGAACAAGAACTTTC+TGG 0.202134 2_4:+55109519 None:intergenic
AAAAGGGAAACCCTAGAAAT+TGG 0.216790 2_4:+55113404 None:intergenic
CACCATCTTCCCCAATTTCT+AGG 0.226084 2_4:-55113415 Msa0335890:five_prime_UTR
GATTCAAATATACACAATTT+AGG 0.234814 2_4:+55108410 None:intergenic
AAGGATGGTGGTGGGGAGGG+TGG 0.244754 2_4:-55113023 Msa0335890:CDS
GGTGGGGAGGGTGGTGGAGG+TGG 0.245687 2_4:-55113014 Msa0335890:CDS
GATGGTGGTGGGGAGGGTGG+TGG 0.246166 2_4:-55113020 Msa0335890:CDS
GTGCTTGATGATGGTGGGCC+AGG 0.248818 2_4:-55113098 Msa0335890:CDS
TCAAAATCTGTTCTTGTAAT+GGG 0.258427 2_4:+55108704 None:intergenic
TCCCCGAAAATAACATAAAA+AGG 0.262830 2_4:+55108494 None:intergenic
GGTGGTGGGGAGGGTGGTGG+AGG 0.266118 2_4:-55113017 Msa0335890:CDS
TTTCTCGAGCCATTTGAAAA+AGG 0.305402 2_4:+55110690 None:intergenic
TTCAAAATCTGTTCTTGTAA+TGG 0.305475 2_4:+55108703 None:intergenic
TGGTGATCTGATCGGGAATA+AGG 0.308359 2_4:+55113439 None:intergenic
GAGAGATTCACAAAGGAGTT+TGG 0.323238 2_4:-55108626 Msa0335890:CDS
GGCCCGCCAACACATGTTTA+AGG 0.326809 2_4:-55109334 Msa0335890:intron
GTTGAATTCTGCGATTATTA+GGG 0.328089 2_4:-55112952 Msa0335890:CDS
TCTAAAGCGTTCATGTATAA+AGG 0.341061 2_4:+55113224 None:intergenic
GAGTGCTAAACAGGCTTTGC+AGG 0.354509 2_4:-55112889 Msa0335890:CDS
GGGGAAGGATGGTGGTGGGG+AGG 0.359432 2_4:-55113027 Msa0335890:CDS
ATTTGTATTTGCAGGCAATA+AGG 0.365094 2_4:-55109401 Msa0335890:intron
AAAGGGAAACCCTAGAAATT+GGG 0.373360 2_4:+55113405 None:intergenic
GGGAATAAGGGAGGAAGAAA+AGG 0.375046 2_4:+55113452 None:intergenic
AAAGAAGAACATAGCATCTT+GGG 0.376196 2_4:+55108984 None:intergenic
TACGTCGTGCTGAGGAGATC+AGG 0.383073 2_4:-55113124 Msa0335890:CDS
TAAAGAAGAACATAGCATCT+TGG 0.387294 2_4:+55108983 None:intergenic
TATTCCACTACCAGATTTGA+AGG 0.389227 2_4:-55109355 Msa0335890:CDS
TAAGGGGAAGGATGGTGGTG+GGG 0.390562 2_4:-55113030 Msa0335890:CDS
TCCTCATAATTTAACTGAAA+AGG 0.391490 2_4:-55109186 Msa0335890:CDS
TAAATCAACCTCCGCACAAT+CGG 0.391564 2_4:+55108461 None:intergenic
GGGAAGGATGGTGGTGGGGA+GGG 0.396231 2_4:-55113026 Msa0335890:CDS
TTGTATGGACCTCCTGGAAC+TGG 0.396491 2_4:-55111545 Msa0335890:CDS
CCCTGTTGCTTTGGTCCACA+TGG 0.396687 2_4:+55108937 None:intergenic
CCCATGTGGACCAAAGCAAC+AGG 0.401299 2_4:-55108938 Msa0335890:CDS
TGAATCTCTCATGAACTTCA+AGG 0.403290 2_4:+55108639 None:intergenic
TGGGTTGGAGAGTGCTAAAC+AGG 0.403615 2_4:-55112898 Msa0335890:CDS
TGAACTGCGCCCTGTTGCTT+TGG 0.404749 2_4:+55108928 None:intergenic
TCCGGCATTGTCTTCGTGTA+CGG 0.414643 2_4:+55113265 None:intergenic
ATTCATTAAAGATGCTGGTT+AGG 0.417064 2_4:-55108222 None:intergenic
GAGGGTGGTGGAGGTGGTGA+AGG 0.417655 2_4:-55113008 Msa0335890:CDS
TGTTGGCGGGCCTTCAAATC+TGG 0.417810 2_4:+55109345 None:intergenic
CTTCTCCACGCTGGCCACAT+AGG 0.417992 2_4:+55110630 None:intergenic
AGTAAGGGGAAGGATGGTGG+TGG 0.426631 2_4:-55113032 Msa0335890:CDS
ACGAATCAAAACAGAACTTC+TGG 0.429142 2_4:-55110585 Msa0335890:CDS
ACAAAGGAGTTTGGAGAAGA+AGG 0.429561 2_4:-55108617 Msa0335890:intron
ACATCATTCCACTTCACATT+CGG 0.436215 2_4:+55112924 None:intergenic
AACGATGTATAGCAATTTCA+AGG 0.438031 2_4:-55113315 Msa0335890:exon
GGGCCAGGGCCAGCTTCTAA+TGG 0.441227 2_4:-55113083 Msa0335890:CDS
GAGGAAGAAAAGGGGAAAGA+TGG 0.445165 2_4:+55113462 None:intergenic
GCTCTAAGCTTCGCCTGCTC+CGG 0.446126 2_4:+55112978 None:intergenic
GGTGATCTGATCGGGAATAA+GGG 0.448114 2_4:+55113440 None:intergenic
TTCATCAACAAATATGATAG+AGG 0.451811 2_4:+55110661 None:intergenic
GGAATAAGGGAGGAAGAAAA+GGG 0.456910 2_4:+55113453 None:intergenic
CCATCCTTCCCCTTACTCTT+CGG 0.459708 2_4:+55113038 None:intergenic
TGCTACGAGGCCGAAGAGTA+AGG 0.461247 2_4:-55113048 Msa0335890:CDS
ACTGAATTCATTAAAGATGC+TGG 0.463463 2_4:-55108227 Msa0335890:CDS
TCGCCATTAGAAGCTGGCCC+TGG 0.467828 2_4:+55113080 None:intergenic
TAAATTGAGCAGGTGCATCT+TGG 0.468085 2_4:-55109215 Msa0335890:intron
AGATCTTGTTTCAAAGTGGA+TGG 0.468719 2_4:-55110738 Msa0335890:CDS
TTAAGAGTCCTGAGGGTATG+TGG 0.469882 2_4:-55108963 Msa0335890:CDS
GTGGAATGATGTTGCTGGGT+TGG 0.472353 2_4:-55112913 Msa0335890:CDS
CTTACCTGGTCTAAAGCATA+AGG 0.474963 2_4:+55109485 None:intergenic
GTGAAGTGGAATGATGTTGC+TGG 0.477745 2_4:-55112918 Msa0335890:CDS
TGAAAAGGATTATGAATACT+TGG 0.477851 2_4:-55109171 Msa0335890:CDS
GTAAGGGGAAGGATGGTGGT+GGG 0.478141 2_4:-55113031 Msa0335890:CDS
TGCCTTAAACATGTGTTGGC+GGG 0.478809 2_4:+55109332 None:intergenic
GTCATGGTGGTTGCTTATGT+TGG 0.479616 2_4:-55108362 Msa0335890:CDS
ATTATGAATACTTGGCTAGC+AGG 0.480856 2_4:-55109163 Msa0335890:CDS
TGCTTGATGATGGTGGGCCA+GGG 0.483435 2_4:-55113097 Msa0335890:CDS
TTGCCTTAAACATGTGTTGG+CGG 0.483730 2_4:+55109331 None:intergenic
TTCTTCTTTAAGAGTCCTGA+GGG 0.484201 2_4:-55108970 Msa0335890:CDS
AGAACTTCTGGTGCAGATGC+AGG 0.485421 2_4:-55110573 Msa0335890:intron
ATGACGGATCTTGCTACAAA+AGG 0.487123 2_4:-55108898 Msa0335890:CDS
TGGTGGAGGTGGTGAAGGAG+AGG 0.488082 2_4:-55113003 Msa0335890:CDS
CCCTTGCCTTAAACATGTGT+TGG 0.488382 2_4:+55109328 None:intergenic
ACCATCTTCCCCAATTTCTA+GGG 0.488630 2_4:-55113414 Msa0335890:five_prime_UTR
AGGTGGTGAAGGAGAGGATC+CGG 0.491616 2_4:-55112997 Msa0335890:CDS
ACCCTAGAAATTGGGGAAGA+TGG 0.492721 2_4:+55113413 None:intergenic
TTCTCCACGCTGGCCACATA+GGG 0.495975 2_4:+55110631 None:intergenic
CATCAGATCTTGTTTCAAAG+TGG 0.499401 2_4:-55110742 Msa0335890:CDS
AGAAAAGGGGAAAGATGGAT+TGG 0.499472 2_4:+55113467 None:intergenic
CAAAATCTGTTCTTGTAATG+GGG 0.501472 2_4:+55108705 None:intergenic
CTATGTGGCCAGCGTGGAGA+AGG 0.514378 2_4:-55110629 Msa0335890:CDS
AAAAGGTTCTTGCTAGGCAA+AGG 0.518856 2_4:-55108682 Msa0335890:CDS
TACAAAAGGACTTGCTTCAA+AGG 0.521759 2_4:-55108884 Msa0335890:intron
AGGGCTGTGCTTGATGATGG+TGG 0.521999 2_4:-55113104 Msa0335890:CDS
GAGCAGGCGAAGCTTAGAGC+GGG 0.525277 2_4:-55112975 Msa0335890:CDS
ATCAGGGCTGTGCTTGATGA+TGG 0.526796 2_4:-55113107 Msa0335890:CDS
TCATCAACAAATATGATAGA+GGG 0.526931 2_4:+55110662 None:intergenic
AAATCAACCTCCGCACAATC+GGG 0.529888 2_4:+55108462 None:intergenic
GCGGCATCGCCATTAGAAGC+TGG 0.534830 2_4:+55113074 None:intergenic
TGGAAAATCATATTTAGCTA+AGG 0.535949 2_4:-55111525 Msa0335890:CDS
ATGGTGGTGGTGATCTGATC+GGG 0.537326 2_4:+55113432 None:intergenic
CGGGCCTTCAAATCTGGTAG+TGG 0.539272 2_4:+55109351 None:intergenic
AAAATCTGTTCTTGTAATGG+GGG 0.541123 2_4:+55108706 None:intergenic
TGAAGGAGAGGATCCGGAGC+AGG 0.541483 2_4:-55112991 Msa0335890:CDS
AGCTTCTAATGGCGATGCCG+CGG 0.546566 2_4:-55113072 Msa0335890:CDS
CCGAAGAGTAAGGGGAAGGA+TGG 0.547863 2_4:-55113038 Msa0335890:CDS
GCTACGAGGCCGAAGAGTAA+GGG 0.547998 2_4:-55113047 Msa0335890:CDS
CGGAGGTTGATTTATTACGA+TGG 0.548713 2_4:-55108452 Msa0335890:CDS
TACTTGGCTAGCAGGACAGA+GGG 0.548985 2_4:-55109155 Msa0335890:CDS
CCTGTTGCTTTGGTCCACAT+GGG 0.563250 2_4:+55108938 None:intergenic
GGGCTGTGCTTGATGATGGT+GGG 0.571206 2_4:-55113103 Msa0335890:CDS
CGCAGTTCAAACTACAATGA+CGG 0.571283 2_4:-55108914 Msa0335890:CDS
GTTCTTCTTTAAGAGTCCTG+AGG 0.572301 2_4:-55108971 Msa0335890:CDS
AGCTAAGGCAGTTGCAACTG+AGG 0.574398 2_4:-55111510 Msa0335890:CDS
GATCTTGTTTCAAAGTGGAT+GGG 0.577099 2_4:-55110737 Msa0335890:CDS
GATGGTGGTGGTGATCTGAT+CGG 0.578672 2_4:+55113431 None:intergenic
AAGGGAAACCCTAGAAATTG+GGG 0.579108 2_4:+55113406 None:intergenic
CACACCTTATGCTTTAGACC+AGG 0.580873 2_4:-55109489 Msa0335890:intron
ACGTCGTGCTGAGGAGATCA+GGG 0.588419 2_4:-55113123 Msa0335890:CDS
CTCAGCACGACGTAAATACT+CGG 0.590884 2_4:+55113133 None:intergenic
AAGAGTAAGGGGAAGGATGG+TGG 0.591605 2_4:-55113035 Msa0335890:CDS
GGGAAAAGCCGAATGTGAAG+TGG 0.593964 2_4:-55112932 Msa0335890:CDS
TCTCATTGCCTTCTCCACGC+TGG 0.597326 2_4:+55110621 None:intergenic
GCCGTACACGAAGACAATGC+CGG 0.598847 2_4:-55113266 Msa0335890:CDS
TGAAGTGGAATGATGTTGCT+GGG 0.601617 2_4:-55112917 Msa0335890:CDS
CGAGTATTTACGTCGTGCTG+AGG 0.603573 2_4:-55113132 Msa0335890:CDS
CATGGGATCCACATACCCTC+AGG 0.604619 2_4:+55108955 None:intergenic
CTACGAGGCCGAAGAGTAAG+GGG 0.613832 2_4:-55113046 Msa0335890:CDS
ATGTGAAGTTCCCGATTGTG+CGG 0.613924 2_4:-55108472 Msa0335890:CDS
CCACTCATATTGTAGGGTGT+AGG 0.618221 2_4:-55109551 Msa0335890:intron
GCGATGCCGCGGTTGCTACG+AGG 0.619805 2_4:-55113061 Msa0335890:CDS
AAATCTGTTCTTGTAATGGG+GGG 0.629544 2_4:+55108707 None:intergenic
GAAATTGGGGAAGATGGTGG+TGG 0.634910 2_4:+55113419 None:intergenic
TAGAAAACTAACTTGTGTCA+TGG 0.636740 2_4:-55108378 Msa0335890:CDS
CATCAACAAATATGATAGAG+GGG 0.637776 2_4:+55110663 None:intergenic
TGAAGTTCCCGATTGTGCGG+AGG 0.638548 2_4:-55108469 Msa0335890:CDS
GATGAAATAGATTCCCTATG+TGG 0.643720 2_4:-55110644 Msa0335890:CDS
CTAGAAATTGGGGAAGATGG+TGG 0.644288 2_4:+55113416 None:intergenic
GAATAAGGGAGGAAGAAAAG+GGG 0.646338 2_4:+55113454 None:intergenic
GAGGCCGAAGAGTAAGGGGA+AGG 0.649712 2_4:-55113042 Msa0335890:CDS
ATCAACAAATATGATAGAGG+GGG 0.666172 2_4:+55110664 None:intergenic
GAGGGTATGTGGATCCCATG+TGG 0.666781 2_4:-55108952 Msa0335890:CDS
GGAGCAGGCGAAGCTTAGAG+CGG 0.673581 2_4:-55112976 Msa0335890:CDS
CCATGTGGACCAAAGCAACA+GGG 0.676849 2_4:-55108937 Msa0335890:CDS
AGCAGGCGAAGCTTAGAGCG+GGG 0.677406 2_4:-55112974 Msa0335890:CDS
ATACTTGGCTAGCAGGACAG+AGG 0.680894 2_4:-55109156 Msa0335890:CDS
GATTCCCTATGTGGCCAGCG+TGG 0.682011 2_4:-55110635 Msa0335890:CDS
CTTCGGCCTCGTAGCAACCG+CGG 0.685179 2_4:+55113055 None:intergenic
GATCTGATCGGGAATAAGGG+AGG 0.699636 2_4:+55113443 None:intergenic
AGTTCATGAGAGATTCACAA+AGG 0.699715 2_4:-55108633 Msa0335890:CDS
TTTCAGGTAAAAGACGACCA+TGG 0.700290 2_4:-55111580 Msa0335890:intron
ACTTGGCTAGCAGGACAGAG+GGG 0.708147 2_4:-55109154 Msa0335890:CDS
AAAACTAACTTGTGTCATGG+TGG 0.713532 2_4:-55108375 Msa0335890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAACAATAAAATTC+AGG + chr2_4:55112472-55112491 None:intergenic 10.0%
!! TATGAAAAATTGAAAATTGA+GGG + chr2_4:55108394-55108413 None:intergenic 15.0%
!!! TCATTTTCTTAAATTATTAC+TGG + chr2_4:55109298-55109317 None:intergenic 15.0%
!! AATTTAAGAAAATGATTTAC+CGG - chr2_4:55109303-55109322 Msa0335890:intron 15.0%
!!! TTGTATTTTATTTAGGTTTT+TGG + chr2_4:55110552-55110571 None:intergenic 15.0%
!! AATAATATAGTAATTTCCAT+AGG + chr2_4:55110591-55110610 None:intergenic 15.0%
!! ATAGGTAAAAAAATGATATA+GGG + chr2_4:55110653-55110672 None:intergenic 15.0%
!! TATAGGTAAAAAAATGATAT+AGG + chr2_4:55110654-55110673 None:intergenic 15.0%
!! TCTTTATCTTATCAATATAT+AGG + chr2_4:55110671-55110690 None:intergenic 15.0%
!! TGGAAATATTCAATAAATAA+AGG + chr2_4:55111318-55111337 None:intergenic 15.0%
!!! TTTTTTTTACAGAAATGATT+TGG + chr2_4:55111338-55111357 None:intergenic 15.0%
!! AAATAAAGAGAAATACAAAA+AGG + chr2_4:55112170-55112189 None:intergenic 15.0%
!! GTATGAAAAATTGAAAATTG+AGG + chr2_4:55108395-55108414 None:intergenic 20.0%
!!! GTTTTTTTCGTACTTTAAAT+GGG + chr2_4:55108566-55108585 None:intergenic 20.0%
!!! GTTGTTTTTATATGATATCA+TGG - chr2_4:55109041-55109060 Msa0335890:intron 20.0%
!! AATAAGCTGAAAACAATTTA+TGG - chr2_4:55109096-55109115 Msa0335890:intron 20.0%
!! ATAAGCTGAAAACAATTTAT+GGG - chr2_4:55109097-55109116 Msa0335890:intron 20.0%
!! ATACAAAATTGCAAATCTTA+AGG - chr2_4:55109830-55109849 Msa0335890:intron 20.0%
!! TACAAAATTGCAAATCTTAA+GGG - chr2_4:55109831-55109850 Msa0335890:intron 20.0%
!! AACTTTAATGATATATTGAC+AGG - chr2_4:55110075-55110094 Msa0335890:intron 20.0%
!! AAATTGTTCTATTGTTTACA+TGG - chr2_4:55110288-55110307 Msa0335890:intron 20.0%
!! GTTAAAGAAATTTCTACATT+AGG - chr2_4:55110330-55110349 Msa0335890:intron 20.0%
!! AATTCTACTTAAATACCAAA+TGG + chr2_4:55110502-55110521 None:intergenic 20.0%
!!! TAGGACTTTGTATTTTATTT+AGG + chr2_4:55110559-55110578 None:intergenic 20.0%
!! AAAAAAATGATATAGGGTAA+AGG + chr2_4:55110647-55110666 None:intergenic 20.0%
!! TGATAAGATAAAGATGAAAA+AGG - chr2_4:55110677-55110696 Msa0335890:CDS 20.0%
!! TTTCTGTATTGTTATGAATT+AGG - chr2_4:55110926-55110945 Msa0335890:intron 20.0%
!!! CAAAAGTTAAAAATGCTTTT+AGG + chr2_4:55110970-55110989 None:intergenic 20.0%
!!! TTGTTTTTTTTTGTGTGATT+TGG + chr2_4:55111365-55111384 None:intergenic 20.0%
!!! TTTTTAAATGTAGTTTTCCT+TGG - chr2_4:55111455-55111474 Msa0335890:intron 20.0%
!!! AATGCTTCAATTTTTTATGT+TGG - chr2_4:55111567-55111586 Msa0335890:CDS 20.0%
!!! TTTTTGTAGGCATTTTTTTA+GGG + chr2_4:55111759-55111778 None:intergenic 20.0%
!!! AAAAATATCGTTTAAAACGA+AGG + chr2_4:55111791-55111810 None:intergenic 20.0%
!! TTGCTTCTTATTAGTATATT+GGG - chr2_4:55111895-55111914 Msa0335890:intron 20.0%
!! AGAACATAAACAAAAAATGT+TGG + chr2_4:55112147-55112166 None:intergenic 20.0%
!! TTATATATAAACCTAGCAAA+TGG - chr2_4:55112483-55112502 Msa0335890:intron 20.0%
!!! AACGTGTCATTTTATTTTTT+TGG - chr2_4:55112510-55112529 Msa0335890:intron 20.0%
!!! AAAAACTTTTTAATCTCTTC+AGG - chr2_4:55112713-55112732 Msa0335890:intron 20.0%
!!! TGGTTGTATTTTTTTGAAAT+TGG - chr2_4:55112923-55112942 Msa0335890:CDS 20.0%
!!! TTTTTTGAAATTGGAGAAAT+AGG - chr2_4:55112932-55112951 Msa0335890:CDS 20.0%
!!! TTTTTGAAATTGGAGAAATA+GGG - chr2_4:55112933-55112952 Msa0335890:CDS 20.0%
!!! AATTATAACACATCTAAAAC+TGG + chr2_4:55113202-55113221 None:intergenic 20.0%
!!! CATCCTTTTTATGTTATTTT+CGG - chr2_4:55113256-55113275 Msa0335890:CDS 20.0%
!!! ATCCTTTTTATGTTATTTTC+GGG - chr2_4:55113257-55113276 Msa0335890:CDS 20.0%
!! GATTCAAATATACACAATTT+AGG + chr2_4:55113346-55113365 None:intergenic 20.0%
!! TTTCATCTTGTAAAAAAAGA+TGG - chr2_4:55113449-55113468 Msa0335890:five_prime_UTR 20.0%
! ATTTGTGTGTGAAGAAAAAA+GGG + chr2_4:55108368-55108387 None:intergenic 25.0%
!!! GGTTTTTTTCGTACTTTAAA+TGG + chr2_4:55108567-55108586 None:intergenic 25.0%
!! TAATTGCTTCTCTGATTTTA+GGG + chr2_4:55108588-55108607 None:intergenic 25.0%
!!! AAGTTTCCTCAATTTTTTAC+TGG - chr2_4:55108907-55108926 Msa0335890:CDS 25.0%
!! TTTGTTGTCTTCTCAATATT+AGG - chr2_4:55109590-55109609 Msa0335890:intron 25.0%
! ATTATGCATAAAGAACTAGA+AGG - chr2_4:55109658-55109677 Msa0335890:intron 25.0%
! AAATCAATATGATCAATCCT+TGG + chr2_4:55109733-55109752 None:intergenic 25.0%
!!! AGGATTGATCATATTGATTT+TGG - chr2_4:55109733-55109752 Msa0335890:intron 25.0%
! TGGAAAATCATATTTAGCTA+AGG - chr2_4:55110228-55110247 Msa0335890:intron 25.0%
!! ACAATTTTACCTGAAAAATG+TGG + chr2_4:55110275-55110294 None:intergenic 25.0%
! AATGAAATCATATTCTCAAG+TGG - chr2_4:55110383-55110402 Msa0335890:intron 25.0%
!!! TTATTTAGGTTTTTGGCATT+TGG + chr2_4:55110545-55110564 None:intergenic 25.0%
! AAAATGAACATGATGTATCT+TGG - chr2_4:55110702-55110721 Msa0335890:CDS 25.0%
!!! TTTTTTTGACGAATAAAGCA+TGG + chr2_4:55110861-55110880 None:intergenic 25.0%
! TCATCAACAAATATGATAGA+GGG + chr2_4:55111094-55111113 None:intergenic 25.0%
! TTCATCAACAAATATGATAG+AGG + chr2_4:55111095-55111114 None:intergenic 25.0%
! AACATTGTAATCAGTTTAGT+TGG - chr2_4:55111233-55111252 Msa0335890:intron 25.0%
! CAGTTATATAGTGTAATATG+TGG - chr2_4:55111290-55111309 Msa0335890:intron 25.0%
! AGCATTAATTACGAATTAAC+AGG + chr2_4:55111553-55111572 None:intergenic 25.0%
!!! GTTTTTGTAGGCATTTTTTT+AGG + chr2_4:55111760-55111779 None:intergenic 25.0%
! CAATATACTAATAAGAAGCA+AGG + chr2_4:55111896-55111915 None:intergenic 25.0%
! CTTGCTTCTTATTAGTATAT+TGG - chr2_4:55111894-55111913 Msa0335890:intron 25.0%
! AATGATGTAAATATTAGCGA+TGG + chr2_4:55112035-55112054 None:intergenic 25.0%
! ATCGCTAATATTTACATCAT+TGG - chr2_4:55112034-55112053 Msa0335890:intron 25.0%
!!! AGAATTATTTTTGTCTTACC+TGG + chr2_4:55112285-55112304 None:intergenic 25.0%
! TCTAATCAATTTGTATTTGC+AGG - chr2_4:55112344-55112363 Msa0335890:intron 25.0%
! TCCTCATAATTTAACTGAAA+AGG - chr2_4:55112567-55112586 Msa0335890:intron 25.0%
!! TCCTTTTCAGTTAAATTATG+AGG + chr2_4:55112571-55112590 None:intergenic 25.0%
! TGAAAAGGATTATGAATACT+TGG - chr2_4:55112582-55112601 Msa0335890:intron 25.0%
! AAGAAATTCATCCAAGTAAA+AGG + chr2_4:55112691-55112710 None:intergenic 25.0%
! ACATATCTTTAATTGACATG+AGG - chr2_4:55112984-55113003 Msa0335890:CDS 25.0%
! TCAAAATCTGTTCTTGTAAT+GGG + chr2_4:55113052-55113071 None:intergenic 25.0%
! TTCAAAATCTGTTCTTGTAA+TGG + chr2_4:55113053-55113072 None:intergenic 25.0%
!!! TACAAGAACAGATTTTGAAA+AGG - chr2_4:55113054-55113073 Msa0335890:CDS 25.0%
!!! TCCTTTTTATGTTATTTTCG+GGG - chr2_4:55113258-55113277 Msa0335890:CDS 25.0%
GATTTGTGTGTGAAGAAAAA+AGG + chr2_4:55108369-55108388 None:intergenic 30.0%
GAAAAATTGAAAATTGAGGG+AGG + chr2_4:55108391-55108410 None:intergenic 30.0%
AACGATGTATAGCAATTTCA+AGG - chr2_4:55108438-55108457 Msa0335890:CDS 30.0%
! AAACGCTTTTGAATAGTTTC+CGG + chr2_4:55108509-55108528 None:intergenic 30.0%
! TCTAAAGCGTTCATGTATAA+AGG + chr2_4:55108532-55108551 None:intergenic 30.0%
! GTAATTGCTTCTCTGATTTT+AGG + chr2_4:55108589-55108608 None:intergenic 30.0%
GTTGAATTCTGCGATTATTA+GGG - chr2_4:55108801-55108820 Msa0335890:intron 30.0%
AAAAATTGAGGAAACTTGAC+AGG + chr2_4:55108904-55108923 None:intergenic 30.0%
!!! TTTCCTCAATTTTTTACTGG+TGG - chr2_4:55108910-55108929 Msa0335890:CDS 30.0%
!!! TTCCTCAATTTTTTACTGGT+GGG - chr2_4:55108911-55108930 Msa0335890:CDS 30.0%
ATTATTGTCTTTGTCGTGTT+TGG - chr2_4:55108943-55108962 Msa0335890:CDS 30.0%
TAGTTCAATCCATATCGAAA+TGG - chr2_4:55109466-55109485 Msa0335890:intron 30.0%
TGTCTATATTGTGATTGTGT+TGG - chr2_4:55109512-55109531 Msa0335890:CDS 30.0%
! CAATTAATTGAAGGTGTGTT+TGG + chr2_4:55109549-55109568 None:intergenic 30.0%
CTGACACTTCAATTAATTGA+AGG + chr2_4:55109558-55109577 None:intergenic 30.0%
!!! GATTGTGTTTGTGTCTTTTT+TGG - chr2_4:55109680-55109699 Msa0335890:intron 30.0%
AAGATTGGATATCAATACCA+AGG - chr2_4:55109713-55109732 Msa0335890:intron 30.0%
!!! CATATTGATTTTGGTATGCA+AGG - chr2_4:55109742-55109761 Msa0335890:intron 30.0%
!! AGTTGGCAAGTTTGTTAATT+TGG - chr2_4:55109785-55109804 Msa0335890:intron 30.0%
! CATGTTTTCAATGTTTTGTG+CGG - chr2_4:55109938-55109957 Msa0335890:intron 30.0%
!! AAAACTTTGAAACCATGAAG+TGG - chr2_4:55109981-55110000 Msa0335890:intron 30.0%
AGCGAAAGCAAGATTATATT+GGG - chr2_4:55110045-55110064 Msa0335890:intron 30.0%
ATCGAATGTGTATAGTTATG+TGG - chr2_4:55110113-55110132 Msa0335890:intron 30.0%
! AAATATGATTTTCCAGTTCC+AGG + chr2_4:55110223-55110242 None:intergenic 30.0%
GAGAATATGATTTCATTCCA+AGG + chr2_4:55110380-55110399 None:intergenic 30.0%
TACTTAAATACCAAATGGCT+AGG + chr2_4:55110497-55110516 None:intergenic 30.0%
AATTATGATGTATGTTGCTC+TGG - chr2_4:55110750-55110769 Msa0335890:CDS 30.0%
ATTATGATGTATGTTGCTCT+GGG - chr2_4:55110751-55110770 Msa0335890:CDS 30.0%
GAATAAAGCATGGAAAATTG+AGG + chr2_4:55110851-55110870 None:intergenic 30.0%
TTATGAATTAGGCACATAAG+TGG - chr2_4:55110937-55110956 Msa0335890:intron 30.0%
AAGATCTGATGAAGAAATAC+TGG + chr2_4:55111002-55111021 None:intergenic 30.0%
!!! GGTTTCAAACCTTTTTCAAA+TGG - chr2_4:55111054-55111073 Msa0335890:intron 30.0%
ATCAACAAATATGATAGAGG+GGG + chr2_4:55111092-55111111 None:intergenic 30.0%
CATCAACAAATATGATAGAG+GGG + chr2_4:55111093-55111112 None:intergenic 30.0%
!!! CAGGTAATAGCTTTATGTTT+TGG - chr2_4:55111199-55111218 Msa0335890:intron 30.0%
ATACAAGCATGCACTTAAAT+GGG + chr2_4:55111417-55111436 None:intergenic 30.0%
AATACAAGCATGCACTTAAA+TGG + chr2_4:55111418-55111437 None:intergenic 30.0%
AGACTGACAAATAAAAACCA+AGG + chr2_4:55111475-55111494 None:intergenic 30.0%
! GCTTTTCAATTTCAAGAACT+TGG - chr2_4:55111504-55111523 Msa0335890:CDS 30.0%
TTTCAATTTCAAGAACTTGG+AGG - chr2_4:55111507-55111526 Msa0335890:CDS 30.0%
TATGTTGGAGTAGAAAATGT+TGG - chr2_4:55111582-55111601 Msa0335890:intron 30.0%
ATGTTGGAGTAGAAAATGTT+GGG - chr2_4:55111583-55111602 Msa0335890:intron 30.0%
!!! AAGGCTTAGTTTGTTTTTGT+AGG + chr2_4:55111772-55111791 None:intergenic 30.0%
! TGAATTTTTCTTGTCTTAGC+AGG - chr2_4:55111814-55111833 Msa0335890:intron 30.0%
TTCCTTTGTTCAGCATATTA+TGG - chr2_4:55111971-55111990 Msa0335890:intron 30.0%
! TCCTCTCTTACAATGTATTT+TGG - chr2_4:55112068-55112087 Msa0335890:intron 30.0%
! CCTCTCTTACAATGTATTTT+GGG - chr2_4:55112069-55112088 Msa0335890:intron 30.0%
AGTTTATCCACTCATATTGT+AGG - chr2_4:55112195-55112214 Msa0335890:intron 30.0%
GTTTATCCACTCATATTGTA+GGG - chr2_4:55112196-55112215 Msa0335890:intron 30.0%
ATTTGTATTTGCAGGCAATA+AGG - chr2_4:55112352-55112371 Msa0335890:intron 30.0%
! TTTTTAATCTCTTCAGGTGA+AGG - chr2_4:55112719-55112738 Msa0335890:intron 30.0%
AAAGAAGAACATAGCATCTT+GGG + chr2_4:55112772-55112791 None:intergenic 30.0%
TAAAGAAGAACATAGCATCT+TGG + chr2_4:55112773-55112792 None:intergenic 30.0%
! CGAGATACTATAGATTTTGA+TGG - chr2_4:55112896-55112915 Msa0335890:CDS 30.0%
!!! ATCTGCATAAGTTTTAAGGT+AGG + chr2_4:55113019-55113038 None:intergenic 30.0%
! AAGGATCTGCATAAGTTTTA+AGG + chr2_4:55113023-55113042 None:intergenic 30.0%
AAAATCTGTTCTTGTAATGG+GGG + chr2_4:55113050-55113069 None:intergenic 30.0%
CAAAATCTGTTCTTGTAATG+GGG + chr2_4:55113051-55113070 None:intergenic 30.0%
!! ATTTTGAAAAGGTTCTTGCT+AGG - chr2_4:55113065-55113084 Msa0335890:CDS 30.0%
TCCCCGAAAATAACATAAAA+AGG + chr2_4:55113262-55113281 None:intergenic 30.0%
! TAGAAAACTAACTTGTGTCA+TGG - chr2_4:55113375-55113394 Msa0335890:five_prime_UTR 30.0%
ACTGAATTCATTAAAGATGC+TGG - chr2_4:55113526-55113545 Msa0335890:five_prime_UTR 30.0%
AAAGGGAAACCCTAGAAATT+GGG + chr2_4:55108351-55108370 None:intergenic 35.0%
AAAAGGGAAACCCTAGAAAT+TGG + chr2_4:55108352-55108371 None:intergenic 35.0%
GGTTGAATTCTGCGATTATT+AGG - chr2_4:55108800-55108819 Msa0335890:intron 35.0%
ACATCATTCCACTTCACATT+CGG + chr2_4:55108832-55108851 None:intergenic 35.0%
AACCCACCAGTAAAAAATTG+AGG + chr2_4:55108916-55108935 None:intergenic 35.0%
!!! TCAATTTTTTACTGGTGGGT+TGG - chr2_4:55108915-55108934 Msa0335890:CDS 35.0%
CTTTGTCGTGTTTGGATAAA+CGG - chr2_4:55108951-55108970 Msa0335890:CDS 35.0%
TAAGCAGTTATCGTGCATAT+AGG + chr2_4:55108989-55109008 None:intergenic 35.0%
AGGTTCGTTATTCCTTAAGT+GGG + chr2_4:55109370-55109389 None:intergenic 35.0%
TAGGTTCGTTATTCCTTAAG+TGG + chr2_4:55109371-55109390 None:intergenic 35.0%
TGTGAGGGTTTATATAGGAT+TGG - chr2_4:55109404-55109423 Msa0335890:intron 35.0%
GTGAGGGTTTATATAGGATT+GGG - chr2_4:55109405-55109424 Msa0335890:intron 35.0%
!!! TGTGTTTGTGTCTTTTTTGG+AGG - chr2_4:55109683-55109702 Msa0335890:intron 35.0%
!!! TTTGTGTCTTTTTTGGAGGA+GGG - chr2_4:55109687-55109706 Msa0335890:intron 35.0%
! AGCTTTTCACAGTTGAAAGT+TGG - chr2_4:55109768-55109787 Msa0335890:intron 35.0%
GAGCGAAAGCAAGATTATAT+TGG - chr2_4:55110044-55110063 Msa0335890:intron 35.0%
AATGTTTACTATGCTTCCTG+CGG - chr2_4:55110146-55110165 Msa0335890:intron 35.0%
TACAACAAAAATGCTCTCCA+TGG + chr2_4:55110193-55110212 None:intergenic 35.0%
!!! TGGAGAGCATTTTTGTTGTA+TGG - chr2_4:55110193-55110212 Msa0335890:intron 35.0%
CAAGGATAATCCTTGTAATC+AGG + chr2_4:55110362-55110381 None:intergenic 35.0%
CTGATTACAAGGATTATCCT+TGG - chr2_4:55110360-55110379 Msa0335890:intron 35.0%
GGCATTAAAATTTGAACTGC+AGG - chr2_4:55110449-55110468 Msa0335890:intron 35.0%
AAGCATGGAAAATTGAGGTA+TGG + chr2_4:55110846-55110865 None:intergenic 35.0%
! CATCAGATCTTGTTTCAAAG+TGG - chr2_4:55111011-55111030 Msa0335890:intron 35.0%
! AGATCTTGTTTCAAAGTGGA+TGG - chr2_4:55111015-55111034 Msa0335890:intron 35.0%
! GATCTTGTTTCAAAGTGGAT+GGG - chr2_4:55111016-55111035 Msa0335890:intron 35.0%
TTTCTCGAGCCATTTGAAAA+AGG + chr2_4:55111066-55111085 None:intergenic 35.0%
GATGAAATAGATTCCCTATG+TGG - chr2_4:55111109-55111128 Msa0335890:intron 35.0%
ACGAATCAAAACAGAACTTC+TGG - chr2_4:55111168-55111187 Msa0335890:intron 35.0%
TAAGTGCATGCTTGTATTTG+TGG - chr2_4:55111420-55111439 Msa0335890:intron 35.0%
TTTGTTTCATATCTCGCACT+TGG + chr2_4:55111612-55111631 None:intergenic 35.0%
GAAACAAAGAAGTTCCACAT+CGG - chr2_4:55111624-55111643 Msa0335890:intron 35.0%
!! TAGTTTGTTATTAGCCGATG+TGG + chr2_4:55111641-55111660 None:intergenic 35.0%
TGAAGAATACACAATGCAAG+TGG - chr2_4:55111663-55111682 Msa0335890:intron 35.0%
CCTTAAGAAGTTGGGTTAAT+GGG + chr2_4:55111699-55111718 None:intergenic 35.0%
ACCTTAAGAAGTTGGGTTAA+TGG + chr2_4:55111700-55111719 None:intergenic 35.0%
GACCATAATATGCTGAACAA+AGG + chr2_4:55111976-55111995 None:intergenic 35.0%
AGCATATTATGGTCTGTTGT+TGG - chr2_4:55111982-55112001 Msa0335890:intron 35.0%
CCCAAAATACATTGTAAGAG+AGG + chr2_4:55112072-55112091 None:intergenic 35.0%
TATTCCACTACCAGATTTGA+AGG - chr2_4:55112398-55112417 Msa0335890:intron 35.0%
ACACGTTAAAACCATTTGCT+AGG + chr2_4:55112497-55112516 None:intergenic 35.0%
!! TTTGGCTTGATAAATTGAGC+AGG - chr2_4:55112528-55112547 Msa0335890:intron 35.0%
ATTATGAATACTTGGCTAGC+AGG - chr2_4:55112590-55112609 Msa0335890:intron 35.0%
AAGTAAAAGGCGATTGAAAC+AGG + chr2_4:55112678-55112697 None:intergenic 35.0%
! TGTTTCAATCGCCTTTTACT+TGG - chr2_4:55112677-55112696 Msa0335890:intron 35.0%
! TTCTTCTTTAAGAGTCCTGA+GGG - chr2_4:55112783-55112802 Msa0335890:intron 35.0%
! TACAAAAGGACTTGCTTCAA+AGG - chr2_4:55112869-55112888 Msa0335890:CDS 35.0%
!! CTATAGATTTTGATGGCTGT+TGG - chr2_4:55112903-55112922 Msa0335890:CDS 35.0%
! AAATCTGTTCTTGTAATGGG+GGG + chr2_4:55113049-55113068 None:intergenic 35.0%
TGAATCTCTCATGAACTTCA+AGG + chr2_4:55113117-55113136 None:intergenic 35.0%
AGTTCATGAGAGATTCACAA+AGG - chr2_4:55113120-55113139 Msa0335890:CDS 35.0%
! AAAACTAACTTGTGTCATGG+TGG - chr2_4:55113378-55113397 Msa0335890:five_prime_UTR 35.0%
AGAAAAGGGGAAAGATGGAT+TGG + chr2_4:55108289-55108308 None:intergenic 40.0%
GAATAAGGGAGGAAGAAAAG+GGG + chr2_4:55108302-55108321 None:intergenic 40.0%
GGAATAAGGGAGGAAGAAAA+GGG + chr2_4:55108303-55108322 None:intergenic 40.0%
ACCATCTTCCCCAATTTCTA+GGG - chr2_4:55108339-55108358 Msa0335890:CDS 40.0%
AAGGGAAACCCTAGAAATTG+GGG + chr2_4:55108350-55108369 None:intergenic 40.0%
TGAAGTGGAATGATGTTGCT+GGG - chr2_4:55108836-55108855 Msa0335890:intron 40.0%
GCTCTTACAAATAGTCTCGT+AGG - chr2_4:55109142-55109161 Msa0335890:CDS 40.0%
CTATATCGACCCTTGTTCTA+TGG - chr2_4:55109200-55109219 Msa0335890:CDS 40.0%
GTTTGTGCTCCATAGAACAA+GGG + chr2_4:55109212-55109231 None:intergenic 40.0%
TGTTTGTGCTCCATAGAACA+AGG + chr2_4:55109213-55109232 None:intergenic 40.0%
! TTTACCGGTGTTAATGTGCA+AGG - chr2_4:55109318-55109337 Msa0335890:intron 40.0%
CTTAAGTGGGACTCTAAGTT+GGG + chr2_4:55109357-55109376 None:intergenic 40.0%
TAATCATGAACCTCGTGTGA+GGG - chr2_4:55109389-55109408 Msa0335890:CDS 40.0%
TCAAAAACCATGGCTGAAAG+GGG + chr2_4:55109438-55109457 None:intergenic 40.0%
CTCAAAAACCATGGCTGAAA+GGG + chr2_4:55109439-55109458 None:intergenic 40.0%
! CTTTCAGCCATGGTTTTTGA+GGG - chr2_4:55109438-55109457 Msa0335890:intron 40.0%
!! TTTCAGCCATGGTTTTTGAG+GGG - chr2_4:55109439-55109458 Msa0335890:intron 40.0%
CAGTCACTTCCATTTCGATA+TGG + chr2_4:55109478-55109497 None:intergenic 40.0%
!!! GTTTGTGTCTTTTTTGGAGG+AGG - chr2_4:55109686-55109705 Msa0335890:intron 40.0%
!!! TTGTGTCTTTTTTGGAGGAG+GGG - chr2_4:55109688-55109707 Msa0335890:intron 40.0%
! TTTCAGGTAAAAGACGACCA+TGG - chr2_4:55110173-55110192 Msa0335890:intron 40.0%
!! TTTTTGTTGTATGGACCTCC+TGG - chr2_4:55110202-55110221 Msa0335890:intron 40.0%
! TATGATTTTCCAGTTCCAGG+AGG + chr2_4:55110220-55110239 None:intergenic 40.0%
!! AGGCTGATTCCACATTTTTC+AGG - chr2_4:55110263-55110282 Msa0335890:intron 40.0%
TAGGAACTTGCCTGATTACA+AGG - chr2_4:55110349-55110368 Msa0335890:intron 40.0%
TGCATTGCTTGCTCTCTTAA+AGG - chr2_4:55110428-55110447 Msa0335890:intron 40.0%
CTGCAGGTAAGCAATTTCTT+AGG - chr2_4:55110465-55110484 Msa0335890:intron 40.0%
!! TTTCCATAGGACTTGCTGTT+AGG + chr2_4:55110578-55110597 None:intergenic 40.0%
GATGGGTGAAAGTGAAAAAC+TGG - chr2_4:55111033-55111052 Msa0335890:intron 40.0%
! TTTCAAGAACTTGGAGGTGT+CGG - chr2_4:55111513-55111532 Msa0335890:CDS 40.0%
AGAAGTTGGGTTAATGGGAT+GGG + chr2_4:55111694-55111713 None:intergenic 40.0%
AAGAAGTTGGGTTAATGGGA+TGG + chr2_4:55111695-55111714 None:intergenic 40.0%
CCCATTAACCCAACTTCTTA+AGG - chr2_4:55111696-55111715 Msa0335890:intron 40.0%
! TTTTCTTGTCTTAGCAGGAG+AGG - chr2_4:55111819-55111838 Msa0335890:intron 40.0%
ATTGCCCAATTCCACTACTA+TGG + chr2_4:55111850-55111869 None:intergenic 40.0%
! AGGAAAGCATGGAACTATGA+TGG + chr2_4:55111956-55111975 None:intergenic 40.0%
ATGCTGAACAAAGGAAAGCA+TGG + chr2_4:55111967-55111986 None:intergenic 40.0%
AATATTAGCGATGGCGACTA+CGG + chr2_4:55112026-55112045 None:intergenic 40.0%
TTTGTTCCTAGCATTGCTGT+AGG - chr2_4:55112119-55112138 Msa0335890:intron 40.0%
CTGCAAGAACAAGAACTTTC+TGG + chr2_4:55112237-55112256 None:intergenic 40.0%
! CTTACCTGGTCTAAAGCATA+AGG + chr2_4:55112271-55112290 None:intergenic 40.0%
TTGCCTTAAACATGTGTTGG+CGG + chr2_4:55112425-55112444 None:intergenic 40.0%
! CCAACACATGTTTAAGGCAA+GGG - chr2_4:55112425-55112444 Msa0335890:intron 40.0%
TAAATTGAGCAGGTGCATCT+TGG - chr2_4:55112538-55112557 Msa0335890:intron 40.0%
! ACATAGCATCTTGGGTTTTG+CGG + chr2_4:55112764-55112783 None:intergenic 40.0%
! GTTCTTCTTTAAGAGTCCTG+AGG - chr2_4:55112782-55112801 Msa0335890:intron 40.0%
CGCAGTTCAAACTACAATGA+CGG - chr2_4:55112839-55112858 Msa0335890:intron 40.0%
!! ATGACGGATCTTGCTACAAA+AGG - chr2_4:55112855-55112874 Msa0335890:CDS 40.0%
!! GGTTGTGATATTTTTCGACG+AGG - chr2_4:55112954-55112973 Msa0335890:CDS 40.0%
AAAAGGTTCTTGCTAGGCAA+AGG - chr2_4:55113071-55113090 Msa0335890:CDS 40.0%
!!! AGGTCACTTTTGCTTACTGT+AGG + chr2_4:55113097-55113116 None:intergenic 40.0%
GAGAGATTCACAAAGGAGTT+TGG - chr2_4:55113127-55113146 Msa0335890:CDS 40.0%
ACAAAGGAGTTTGGAGAAGA+AGG - chr2_4:55113136-55113155 Msa0335890:CDS 40.0%
TAAATCAACCTCCGCACAAT+CGG + chr2_4:55113295-55113314 None:intergenic 40.0%
! CGGAGGTTGATTTATTACGA+TGG - chr2_4:55113301-55113320 Msa0335890:CDS 40.0%
GAGGAAGAAAAGGGGAAAGA+TGG + chr2_4:55108294-55108313 None:intergenic 45.0%
GGGAATAAGGGAGGAAGAAA+AGG + chr2_4:55108304-55108323 None:intergenic 45.0%
GGTGATCTGATCGGGAATAA+GGG + chr2_4:55108316-55108335 None:intergenic 45.0%
TGGTGATCTGATCGGGAATA+AGG + chr2_4:55108317-55108336 None:intergenic 45.0%
CTAGAAATTGGGGAAGATGG+TGG + chr2_4:55108340-55108359 None:intergenic 45.0%
CACCATCTTCCCCAATTTCT+AGG - chr2_4:55108338-55108357 Msa0335890:CDS 45.0%
ACCCTAGAAATTGGGGAAGA+TGG + chr2_4:55108343-55108362 None:intergenic 45.0%
CTCAGCACGACGTAAATACT+CGG + chr2_4:55108623-55108642 None:intergenic 45.0%
GTGAAGTGGAATGATGTTGC+TGG - chr2_4:55108835-55108854 Msa0335890:intron 45.0%
CCTTAAGTGGGACTCTAAGT+TGG + chr2_4:55109358-55109377 None:intergenic 45.0%
CCAACTTAGAGTCCCACTTA+AGG - chr2_4:55109355-55109374 Msa0335890:CDS 45.0%
CTCACACGAGGTTCATGATT+AGG + chr2_4:55109390-55109409 None:intergenic 45.0%
CTAATCATGAACCTCGTGTG+AGG - chr2_4:55109388-55109407 Msa0335890:CDS 45.0%
CCTATATAAACCCTCACACG+AGG + chr2_4:55109402-55109421 None:intergenic 45.0%
CCTCGTGTGAGGGTTTATAT+AGG - chr2_4:55109399-55109418 Msa0335890:intron 45.0%
CCTCAAAAACCATGGCTGAA+AGG + chr2_4:55109440-55109459 None:intergenic 45.0%
! CCTTTCAGCCATGGTTTTTG+AGG - chr2_4:55109437-55109456 Msa0335890:intron 45.0%
!! TTCAGCCATGGTTTTTGAGG+GGG - chr2_4:55109440-55109459 Msa0335890:intron 45.0%
TAACTCCCCCTCAAAAACCA+TGG + chr2_4:55109448-55109467 None:intergenic 45.0%
TTTGGAGGAGGGGATAAGAT+TGG - chr2_4:55109698-55109717 Msa0335890:intron 45.0%
TTTGTGCGGAGAACTCTACA+AGG - chr2_4:55109952-55109971 Msa0335890:intron 45.0%
! GGTCGTCTTTTACCTGAAAG+AGG + chr2_4:55110172-55110191 None:intergenic 45.0%
TAGGACTTTGCCTAGCCATT+TGG - chr2_4:55110484-55110503 Msa0335890:intron 45.0%
!! TTTGGCATTTGGTGCAGTTG+CGG + chr2_4:55110534-55110553 None:intergenic 45.0%
AGTCCTAACAGCAAGTCCTA+TGG - chr2_4:55110572-55110591 Msa0335890:intron 45.0%
! GAGATTGAGCTGTTTCATGC+TGG - chr2_4:55111870-55111889 Msa0335890:intron 45.0%
TTGGAACCTACAGCAATGCT+AGG + chr2_4:55112128-55112147 None:intergenic 45.0%
CCTACACCCTACAATATGAG+TGG + chr2_4:55112205-55112224 None:intergenic 45.0%
CCACTCATATTGTAGGGTGT+AGG - chr2_4:55112202-55112221 Msa0335890:intron 45.0%
! CACACCTTATGCTTTAGACC+AGG - chr2_4:55112264-55112283 Msa0335890:intron 45.0%
!! TAGCTTCCTGCTGACTCTAT+GGG + chr2_4:55112319-55112338 None:intergenic 45.0%
!! ATAGCTTCCTGCTGACTCTA+TGG + chr2_4:55112320-55112339 None:intergenic 45.0%
! TGCCTTAAACATGTGTTGGC+GGG + chr2_4:55112424-55112443 None:intergenic 45.0%
! GCCAACACATGTTTAAGGCA+AGG - chr2_4:55112424-55112443 Msa0335890:intron 45.0%
CCCTTGCCTTAAACATGTGT+TGG + chr2_4:55112428-55112447 None:intergenic 45.0%
! TTAAGAGTCCTGAGGGTATG+TGG - chr2_4:55112790-55112809 Msa0335890:intron 45.0%
ATGTGAAGTTCCCGATTGTG+CGG - chr2_4:55113281-55113300 Msa0335890:CDS 45.0%
AAATCAACCTCCGCACAATC+GGG + chr2_4:55113294-55113313 None:intergenic 45.0%
GTCATGGTGGTTGCTTATGT+TGG - chr2_4:55113391-55113410 Msa0335890:five_prime_UTR 45.0%
GATCTGATCGGGAATAAGGG+AGG + chr2_4:55108313-55108332 None:intergenic 50.0%
!! ATGGTGGTGGTGATCTGATC+GGG + chr2_4:55108324-55108343 None:intergenic 50.0%
!! GATGGTGGTGGTGATCTGAT+CGG + chr2_4:55108325-55108344 None:intergenic 50.0%
! GAAATTGGGGAAGATGGTGG+TGG + chr2_4:55108337-55108356 None:intergenic 50.0%
TCCGGCATTGTCTTCGTGTA+CGG + chr2_4:55108491-55108510 None:intergenic 50.0%
CGAGTATTTACGTCGTGCTG+AGG - chr2_4:55108621-55108640 Msa0335890:CDS 50.0%
ATCAGGGCTGTGCTTGATGA+TGG - chr2_4:55108646-55108665 Msa0335890:CDS 50.0%
CCATCCTTCCCCTTACTCTT+CGG + chr2_4:55108718-55108737 None:intergenic 50.0%
AAGAGTAAGGGGAAGGATGG+TGG - chr2_4:55108718-55108737 Msa0335890:CDS 50.0%
GGGAAAAGCCGAATGTGAAG+TGG - chr2_4:55108821-55108840 Msa0335890:intron 50.0%
GTGGAATGATGTTGCTGGGT+TGG - chr2_4:55108840-55108859 Msa0335890:intron 50.0%
!! TGGGTTGGAGAGTGCTAAAC+AGG - chr2_4:55108855-55108874 Msa0335890:intron 50.0%
GAGTGCTAAACAGGCTTTGC+AGG - chr2_4:55108864-55108883 Msa0335890:intron 50.0%
! ACCGGTGTTAATGTGCAAGG+AGG - chr2_4:55109321-55109340 Msa0335890:intron 50.0%
CCCTCCTTGCACATTAACAC+CGG + chr2_4:55109325-55109344 None:intergenic 50.0%
! CCGGTGTTAATGTGCAAGGA+GGG - chr2_4:55109322-55109341 Msa0335890:intron 50.0%
AAAACCATGGCTGAAAGGGG+AGG + chr2_4:55109435-55109454 None:intergenic 50.0%
ACCATGAAGTGGCTGTTCTC+TGG - chr2_4:55109992-55110011 Msa0335890:intron 50.0%
TCCAGAGAACAGCCACTTCA+TGG + chr2_4:55109996-55110015 None:intergenic 50.0%
! TTTTACCTGAAAGAGGCCGC+AGG + chr2_4:55110165-55110184 None:intergenic 50.0%
TTGTATGGACCTCCTGGAAC+TGG - chr2_4:55110208-55110227 Msa0335890:intron 50.0%
AGCTAAGGCAGTTGCAACTG+AGG - chr2_4:55110243-55110262 Msa0335890:intron 50.0%
AGAACTTCTGGTGCAGATGC+AGG - chr2_4:55111180-55111199 Msa0335890:intron 50.0%
CCAATTCCACTACTATGGCC+CGG + chr2_4:55111845-55111864 None:intergenic 50.0%
! CGGGCCATAGTAGTGGAATT+GGG - chr2_4:55111843-55111862 Msa0335890:intron 50.0%
TATCACCCCATAGAGTCAGC+AGG - chr2_4:55112310-55112329 Msa0335890:intron 50.0%
!! AGCTTCCTGCTGACTCTATG+GGG + chr2_4:55112318-55112337 None:intergenic 50.0%
ATACTTGGCTAGCAGGACAG+AGG - chr2_4:55112597-55112616 Msa0335890:intron 50.0%
TACTTGGCTAGCAGGACAGA+GGG - chr2_4:55112598-55112617 Msa0335890:intron 50.0%
!! CCTGTTGCTTTGGTCCACAT+GGG + chr2_4:55112818-55112837 None:intergenic 50.0%
CCATGTGGACCAAAGCAACA+GGG - chr2_4:55112816-55112835 Msa0335890:intron 50.0%
! TTCTTGTAATGGGGGGTGGA+AGG + chr2_4:55113042-55113061 None:intergenic 50.0%
! TCTGTTCTTGTAATGGGGGG+TGG + chr2_4:55113046-55113065 None:intergenic 50.0%
GCCGTACACGAAGACAATGC+CGG - chr2_4:55108487-55108506 Msa0335890:CDS 55.0%
TACGTCGTGCTGAGGAGATC+AGG - chr2_4:55108629-55108648 Msa0335890:CDS 55.0%
ACGTCGTGCTGAGGAGATCA+GGG - chr2_4:55108630-55108649 Msa0335890:CDS 55.0%
!! AGGGCTGTGCTTGATGATGG+TGG - chr2_4:55108649-55108668 Msa0335890:CDS 55.0%
!! GGGCTGTGCTTGATGATGGT+GGG - chr2_4:55108650-55108669 Msa0335890:CDS 55.0%
!! TGCTTGATGATGGTGGGCCA+GGG - chr2_4:55108656-55108675 Msa0335890:CDS 55.0%
AGCTTCTAATGGCGATGCCG+CGG - chr2_4:55108681-55108700 Msa0335890:CDS 55.0%
TGCTACGAGGCCGAAGAGTA+AGG - chr2_4:55108705-55108724 Msa0335890:CDS 55.0%
GCTACGAGGCCGAAGAGTAA+GGG - chr2_4:55108706-55108725 Msa0335890:CDS 55.0%
CTACGAGGCCGAAGAGTAAG+GGG - chr2_4:55108707-55108726 Msa0335890:CDS 55.0%
CCGAAGAGTAAGGGGAAGGA+TGG - chr2_4:55108715-55108734 Msa0335890:CDS 55.0%
! AGTAAGGGGAAGGATGGTGG+TGG - chr2_4:55108721-55108740 Msa0335890:intron 55.0%
! GTAAGGGGAAGGATGGTGGT+GGG - chr2_4:55108722-55108741 Msa0335890:intron 55.0%
! TAAGGGGAAGGATGGTGGTG+GGG - chr2_4:55108723-55108742 Msa0335890:intron 55.0%
AGGTGGTGAAGGAGAGGATC+CGG - chr2_4:55108756-55108775 Msa0335890:intron 55.0%
CAATCCTCCCCTTTCAGCCA+TGG - chr2_4:55109428-55109447 Msa0335890:intron 55.0%
TTCTCCACGCTGGCCACATA+GGG + chr2_4:55111125-55111144 None:intergenic 55.0%
TCTCATTGCCTTCTCCACGC+TGG + chr2_4:55111135-55111154 None:intergenic 55.0%
CTTGTCTTAGCAGGAGAGGC+CGG - chr2_4:55111823-55111842 Msa0335890:intron 55.0%
TTGTCTTAGCAGGAGAGGCC+GGG - chr2_4:55111824-55111843 Msa0335890:intron 55.0%
! CCGGGCCATAGTAGTGGAAT+TGG - chr2_4:55111842-55111861 Msa0335890:intron 55.0%
CGGGCCTTCAAATCTGGTAG+TGG + chr2_4:55112405-55112424 None:intergenic 55.0%
! TGTTGGCGGGCCTTCAAATC+TGG + chr2_4:55112411-55112430 None:intergenic 55.0%
GGCCCGCCAACACATGTTTA+AGG - chr2_4:55112419-55112438 Msa0335890:intron 55.0%
ACTTGGCTAGCAGGACAGAG+GGG - chr2_4:55112599-55112618 Msa0335890:intron 55.0%
! AGCAGGACAGAGGGGTTTTC+TGG - chr2_4:55112607-55112626 Msa0335890:intron 55.0%
! GCATCTTGGGTTTTGCGGAC+AGG + chr2_4:55112759-55112778 None:intergenic 55.0%
CATGGGATCCACATACCCTC+AGG + chr2_4:55112801-55112820 None:intergenic 55.0%
! GAGGGTATGTGGATCCCATG+TGG - chr2_4:55112801-55112820 Msa0335890:intron 55.0%
CCCATGTGGACCAAAGCAAC+AGG - chr2_4:55112815-55112834 Msa0335890:intron 55.0%
!! CCCTGTTGCTTTGGTCCACA+TGG + chr2_4:55112819-55112838 None:intergenic 55.0%
! TGAACTGCGCCCTGTTGCTT+TGG + chr2_4:55112828-55112847 None:intergenic 55.0%
TGAAGTTCCCGATTGTGCGG+AGG - chr2_4:55113284-55113303 Msa0335890:CDS 55.0%
!! GTGCTTGATGATGGTGGGCC+AGG - chr2_4:55108655-55108674 Msa0335890:CDS 60.0%
TCGCCATTAGAAGCTGGCCC+TGG + chr2_4:55108676-55108695 None:intergenic 60.0%
GCGGCATCGCCATTAGAAGC+TGG + chr2_4:55108682-55108701 None:intergenic 60.0%
GAGGCCGAAGAGTAAGGGGA+AGG - chr2_4:55108711-55108730 Msa0335890:CDS 60.0%
TGGTGGAGGTGGTGAAGGAG+AGG - chr2_4:55108750-55108769 Msa0335890:intron 60.0%
TGAAGGAGAGGATCCGGAGC+AGG - chr2_4:55108762-55108781 Msa0335890:intron 60.0%
! GCTCTAAGCTTCGCCTGCTC+CGG + chr2_4:55108778-55108797 None:intergenic 60.0%
GGAGCAGGCGAAGCTTAGAG+CGG - chr2_4:55108777-55108796 Msa0335890:intron 60.0%
GAGCAGGCGAAGCTTAGAGC+GGG - chr2_4:55108778-55108797 Msa0335890:intron 60.0%
AGCAGGCGAAGCTTAGAGCG+GGG - chr2_4:55108779-55108798 Msa0335890:intron 60.0%
TGCTTCCTGCGGCCTCTTTC+AGG - chr2_4:55110157-55110176 Msa0335890:intron 60.0%
GATTCCCTATGTGGCCAGCG+TGG - chr2_4:55111118-55111137 Msa0335890:intron 60.0%
CTTCTCCACGCTGGCCACAT+AGG + chr2_4:55111126-55111145 None:intergenic 60.0%
CTATGTGGCCAGCGTGGAGA+AGG - chr2_4:55111124-55111143 Msa0335890:intron 60.0%
GGGCCAGGGCCAGCTTCTAA+TGG - chr2_4:55108670-55108689 Msa0335890:CDS 65.0%
CTTCGGCCTCGTAGCAACCG+CGG + chr2_4:55108701-55108720 None:intergenic 65.0%
!! GGGAAGGATGGTGGTGGGGA+GGG - chr2_4:55108727-55108746 Msa0335890:intron 65.0%
!! AAGGATGGTGGTGGGGAGGG+TGG - chr2_4:55108730-55108749 Msa0335890:intron 65.0%
!! GAGGGTGGTGGAGGTGGTGA+AGG - chr2_4:55108745-55108764 Msa0335890:intron 65.0%
GAGAGGCCGGGCCATAGTAG+TGG - chr2_4:55111836-55111855 Msa0335890:intron 65.0%
GCGATGCCGCGGTTGCTACG+AGG - chr2_4:55108692-55108711 Msa0335890:CDS 70.0%
!! GGGGAAGGATGGTGGTGGGG+AGG - chr2_4:55108726-55108745 Msa0335890:intron 70.0%
!! GATGGTGGTGGGGAGGGTGG+TGG - chr2_4:55108733-55108752 Msa0335890:intron 70.0%
!! GGTGGTGGGGAGGGTGGTGG+AGG - chr2_4:55108736-55108755 Msa0335890:intron 75.0%
!! GGTGGGGAGGGTGGTGGAGG+TGG - chr2_4:55108739-55108758 Msa0335890:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55108223 55113552 55108223 ID=Msa0335890;Name=Msa0335890
chr2_4 mRNA 55108223 55113552 55108223 ID=Msa0335890-mRNA-1;Parent=Msa0335890;Name=Msa0335890-mRNA-1;_AED=0.16;_eAED=0.16;_QI=219|0.87|0.77|1|1|1|9|0|542
chr2_4 exon 55108223 55108539 55108223 ID=Msa0335890-mRNA-1:exon:16722;Parent=Msa0335890-mRNA-1
chr2_4 exon 55108618 55108738 55108618 ID=Msa0335890-mRNA-1:exon:16721;Parent=Msa0335890-mRNA-1
chr2_4 exon 55108885 55109040 55108885 ID=Msa0335890-mRNA-1:exon:16720;Parent=Msa0335890-mRNA-1
chr2_4 exon 55109127 55109225 55109127 ID=Msa0335890-mRNA-1:exon:16719;Parent=Msa0335890-mRNA-1
chr2_4 exon 55109335 55109409 55109335 ID=Msa0335890-mRNA-1:exon:16718;Parent=Msa0335890-mRNA-1
chr2_4 exon 55109490 55109558 55109490 ID=Msa0335890-mRNA-1:exon:16717;Parent=Msa0335890-mRNA-1
chr2_4 exon 55110574 55110772 55110574 ID=Msa0335890-mRNA-1:exon:16716;Parent=Msa0335890-mRNA-1
chr2_4 exon 55111491 55111596 55111491 ID=Msa0335890-mRNA-1:exon:16715;Parent=Msa0335890-mRNA-1
chr2_4 exon 55112847 55113552 55112847 ID=Msa0335890-mRNA-1:exon:16714;Parent=Msa0335890-mRNA-1
chr2_4 five_prime_UTR 55113334 55113552 55113334 ID=Msa0335890-mRNA-1:five_prime_utr;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55112847 55113333 55112847 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55111491 55111596 55111491 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55110574 55110772 55110574 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55109490 55109558 55109490 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55109335 55109409 55109335 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55109127 55109225 55109127 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55108885 55109040 55108885 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55108618 55108738 55108618 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
chr2_4 CDS 55108223 55108539 55108223 ID=Msa0335890-mRNA-1:cds;Parent=Msa0335890-mRNA-1
Gene Sequence

>Msa0335890

ATGTATAGCAATTTCAAGGAACAAGCAATAGAGTACGTGAAACAAGCCGTACACGAAGACAATGCCGGAAACTATTCAAAAGCGTTTCCTTTATACATGAACGCTTTAGAGTATTTCAAAACCCATTTAAAGTACGAAAAAAACCCTAAAATCAGAGAAGCAATTACGCAGAAATTCACCGAGTATTTACGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGATGGTGGGCCAGGGCCAGCTTCTAATGGCGATGCCGCGGTTGCTACGAGGCCGAAGAGTAAGGGGAAGGATGGTGGTGGGGAGGGTGGTGGAGGTGGTGAAGGAGAGGATCCGGAGCAGGCGAAGCTTAGAGCGGGGTTGAATTCTGCGATTATTAGGGAAAAGCCGAATGTGAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGGCTTTGCAGGAAGCTGTTATTTTACCTGTCAAGTTTCCTCAATTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGAAAATCATATTTAGCTAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAACCTTTTTCAAATGGCTCGAGAAAGTGCCCCCTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAACACACCTTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATTTATATTCCACTACCAGATTTGAAGGCCCGCCAACACATGTTTAAGGTGCATCTTGGAGATACTCCTCATAATTTAACTGAAAAGGATTATGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGATATATCTGTTTGCGTGAAGGATGTTCTATTTGAACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAGTCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGCGCAGTTCAAACTACAATGACGGATCTTGCTACAAAAGGACTTGCTTCAAAGATCCTTCCACCCCCCATTACAAGAACAGATTTTGAAAAGGTTCTTGCTAGGCAAAGGCCTACAGTAAGCAAAAGTGACCTTGAAGTTCATGAGAGATTCACAAAGGAGTTTGGAGAAGAAGTTATTGAATCAAGTGAAATGCATCCTTTTTATGTTATTTTCGGGGATGTGAAGTTCCCGATTGTGCGGAGGTTGATTTATTACGATGGATACTCTCATTTTGTTTCTCCTAAATTGTGTATATTTGAATCTGAAATGATTAGAAAACTAACTTGTGTCATGGTGGTTGCTTATGTTGGTATAGTGCTTGTGTTTTTCAGTTTTCAAAACGATGTTTCATCTTGTAAAAAAAGATGGATGATTCACGATATATTCAGTAGCTATGCTGCACTGAACTATGATATAAGACAAACTGAATTCATTAAAGATGCTGGTTAG
Protein sequence

>Msa0335890

MYSNFKEQAIEYVKQAVHEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKGKDGGGEGGGGGEGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTEKDYEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMTDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLEVHERFTKEFGEEVIESSEMHPFYVIFGDVKFPIVRRLIYYDGYSHFVSPKLCIFESEMIRKLTCVMVVAYVGIVLVFFSFQNDVSSCKKRWMIHDIFSSYAALNYDIRQTEFIKDAG*