Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388670 | XP_013450277.1 | 98.182 | 330 | 4 | 1 | 1 | 330 | 1 | 328 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388670 | sp|Q8GW10|BAH1L_ARATH | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.37e-140 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388670 | A0A072UEU1 | 98.182 | 330 | 4 | 1 | 1 | 330 | 1 | 328 | 0.0 | 671 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0388670 | Msa1081190 | 0.933587 | 1.494281e-95 | -8.615850e-47 |
| Msa0388670 | Msa1081200 | 0.965719 | 5.703071e-125 | -8.615850e-47 |
| Msa0388670 | Msa1126550 | 0.920557 | 1.100901e-87 | -8.615850e-47 |
| Msa0388670 | Msa1234910 | 0.804872 | 1.753551e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388670 | MtrunA17_Chr7g0268131 | 98.182 | 330 | 4 | 1 | 1 | 330 | 1 | 328 | 0.0 | 671 |
| Msa0388670 | MtrunA17_Chr1g0195671 | 41.088 | 331 | 178 | 3 | 1 | 329 | 1 | 316 | 8.73e-84 | 256 |
| Msa0388670 | MtrunA17_Chr7g0269281 | 42.598 | 331 | 173 | 3 | 1 | 329 | 1 | 316 | 1.10e-83 | 255 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0388670 | AT2G38920.5 | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.44e-141 | 402 |
| Msa0388670 | AT2G38920.1 | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.44e-141 | 402 |
| Msa0388670 | AT2G38920.6 | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.44e-141 | 402 |
| Msa0388670 | AT2G38920.2 | 60.000 | 335 | 125 | 5 | 1 | 328 | 1 | 333 | 1.73e-139 | 398 |
| Msa0388670 | AT1G02860.1 | 41.813 | 342 | 179 | 8 | 1 | 329 | 1 | 335 | 3.13e-88 | 268 |
| Msa0388670 | AT2G38920.4 | 58.475 | 236 | 90 | 4 | 1 | 229 | 1 | 235 | 2.81e-87 | 263 |
| Msa0388670 | AT1G02860.2 | 41.813 | 342 | 177 | 9 | 1 | 329 | 1 | 333 | 5.73e-86 | 262 |
| Msa0388670 | AT2G38920.3 | 57.269 | 227 | 89 | 4 | 1 | 220 | 1 | 226 | 8.30e-81 | 246 |
| Msa0388670 | AT1G02860.3 | 38.430 | 242 | 129 | 8 | 1 | 229 | 1 | 235 | 4.46e-45 | 154 |
Find 88 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCTATTAAGAGATATTA+TGG | 0.169364 | 3_1:+93128544 | Msa0388670:three_prime_UTR |
| ACTCTGGACTTGCAGCTTTA+AGG | 0.187562 | 3_1:-93127196 | None:intergenic |
| TTCTCAGGTGCAAAGATTAT+TGG | 0.189972 | 3_1:+93128102 | Msa0388670:intron |
| AGAATTGTTCAAATAAAATT+TGG | 0.193267 | 3_1:-93128457 | None:intergenic |
| TGAAGCAGTCAAGGGAATTT+TGG | 0.193522 | 3_1:+93128159 | Msa0388670:CDS |
| CAATTAGAATTCTCCCTTCT+TGG | 0.214086 | 3_1:-93126407 | None:intergenic |
| CCTCATCGCAATTGCATTCA+TGG | 0.220874 | 3_1:-93126439 | None:intergenic |
| TAAGATGTTATTCAGTAAAC+TGG | 0.242417 | 3_1:-93128520 | None:intergenic |
| CTCACCTTGGCTGGTTGAAT+TGG | 0.242710 | 3_1:+93126831 | Msa0388670:CDS |
| CATCTTGTCCACTTGAATTC+AGG | 0.267892 | 3_1:-93126864 | None:intergenic |
| ATCAAACTCTACCTCAAATA+TGG | 0.279903 | 3_1:-93128356 | None:intergenic |
| TGCATCTGTGATGACTTTCC+AGG | 0.286509 | 3_1:+93127172 | Msa0388670:CDS |
| GTGCACATATTGAATATAAC+AGG | 0.342132 | 3_1:+93124569 | Msa0388670:CDS |
| AATTAGAATTCTCCCTTCTT+GGG | 0.369748 | 3_1:-93126406 | None:intergenic |
| AGCAAATGCCAAATAGAAAA+TGG | 0.371078 | 3_1:+93128264 | Msa0388670:three_prime_UTR |
| TCACCTTGGCTGGTTGAATT+GGG | 0.383747 | 3_1:+93126832 | Msa0388670:CDS |
| GGAAATAGCGAAATGAAATT+CGG | 0.391506 | 3_1:+93124490 | Msa0388670:exon |
| AGAAAAGAAAATTACTGTAT+AGG | 0.399557 | 3_1:-93128382 | None:intergenic |
| TATTCAAGCTTAATAGAATC+TGG | 0.400747 | 3_1:-93126964 | None:intergenic |
| CATATAGGACACTTTGACTC+TGG | 0.405982 | 3_1:-93127212 | None:intergenic |
| GGTGGAGCGGGAGTGGCTAT+TGG | 0.406523 | 3_1:+93124537 | Msa0388670:CDS |
| GCGTTCATTTCATTCTTCTC+AGG | 0.408650 | 3_1:+93124249 | Msa0388670:five_prime_UTR |
| TTCATGTGATTTAAATGTAA+TGG | 0.410668 | 3_1:+93126918 | Msa0388670:CDS |
| TCAACTCGGAGAAGAACTTC+TGG | 0.410793 | 3_1:-93126248 | None:intergenic |
| AAGATTGACATTGACATAAC+TGG | 0.415523 | 3_1:-93124666 | None:intergenic |
| ACCTGCAGGTGGAGCGGGAG+TGG | 0.434211 | 3_1:+93124530 | Msa0388670:CDS |
| GTACGAAGTACAGTTTCGTT+AGG | 0.435687 | 3_1:-93124216 | None:intergenic |
| ATCCTATTAAGAGATATTAT+GGG | 0.437447 | 3_1:+93128545 | Msa0388670:three_prime_UTR |
| ATGAAATGAACGCAAAGTAC+AGG | 0.439123 | 3_1:-93124239 | None:intergenic |
| ATTCATACCTCTCTGCATAT+AGG | 0.445967 | 3_1:-93127227 | None:intergenic |
| AGGTACACAGTTCTGTGAAT+GGG | 0.450562 | 3_1:+93126761 | Msa0388670:intron |
| AAAGAGACTAGCAATTTGCT+TGG | 0.452650 | 3_1:+93128487 | Msa0388670:three_prime_UTR |
| CTTCATCTTCACATTGCAAA+AGG | 0.453905 | 3_1:+93126324 | Msa0388670:CDS |
| TTCTAACATTCGGACTGCCT+TGG | 0.455919 | 3_1:-93127935 | None:intergenic |
| GACTTGCAGCTTTAAGGCCC+TGG | 0.457593 | 3_1:-93127190 | None:intergenic |
| AGAGTACCTGCAGGTGGAGC+GGG | 0.460266 | 3_1:+93124525 | Msa0388670:CDS |
| ATTGGAAAGAAAGGCTAGCT+AGG | 0.460901 | 3_1:+93128120 | Msa0388670:CDS |
| TGGCCACAACTCAATGCATA+TGG | 0.463628 | 3_1:-93127119 | None:intergenic |
| CAAGATGGTTGCGAGCTTGA+TGG | 0.464213 | 3_1:+93126880 | Msa0388670:CDS |
| GCAAAGATTATTGGAAAGAA+AGG | 0.473719 | 3_1:+93128111 | Msa0388670:CDS |
| CAGCAATCCCACTGTATATG+TGG | 0.474837 | 3_1:-93128192 | None:intergenic |
| AATTCTCCCTTCTTGGGCAA+GGG | 0.477772 | 3_1:-93126400 | None:intergenic |
| GAATTCTCCCTTCTTGGGCA+AGG | 0.478477 | 3_1:-93126401 | None:intergenic |
| TTTGGAAGTTTAAATATGAA+AGG | 0.481803 | 3_1:-93128439 | None:intergenic |
| GAAAGGCTAGCTAGGGAAAG+AGG | 0.495583 | 3_1:+93128128 | Msa0388670:CDS |
| TCGATCTGCTTATGAAAAGA+AGG | 0.497598 | 3_1:+93127959 | Msa0388670:CDS |
| CAGGTACACAGTTCTGTGAA+TGG | 0.499905 | 3_1:+93126760 | Msa0388670:intron |
| GCAGATCGAGTTCTAACATT+CGG | 0.500588 | 3_1:-93127945 | None:intergenic |
| AAAGAAGCATCAGATATTGC+AGG | 0.508685 | 3_1:+93126273 | Msa0388670:CDS |
| CCTCAAATATGGATCGTTGA+GGG | 0.510627 | 3_1:-93128345 | None:intergenic |
| GCCACTCCCGCTCCACCTGC+AGG | 0.511617 | 3_1:-93124531 | None:intergenic |
| GTACAGTTTCGTTAGGGTCA+AGG | 0.514689 | 3_1:-93124209 | None:intergenic |
| CGAGAACTTAGGGAAGTTAG+TGG | 0.517609 | 3_1:+93128320 | Msa0388670:three_prime_UTR |
| GCATCTGTGATGACTTTCCA+GGG | 0.518610 | 3_1:+93127173 | Msa0388670:CDS |
| TACGAAGTACAGTTTCGTTA+GGG | 0.522874 | 3_1:-93124215 | None:intergenic |
| CTGAATTCAAGTGGACAAGA+TGG | 0.526532 | 3_1:+93126865 | Msa0388670:CDS |
| CAAGGTTGTCGAGAAGTGAA+TGG | 0.533729 | 3_1:-93124191 | None:intergenic |
| AGGGAAGCCCTTGCCCAAGA+AGG | 0.536511 | 3_1:+93126393 | Msa0388670:CDS |
| CCCTCAACGATCCATATTTG+AGG | 0.541541 | 3_1:+93128345 | Msa0388670:three_prime_UTR |
| AATCCATATGCATTGAGTTG+TGG | 0.545870 | 3_1:+93127116 | Msa0388670:CDS |
| GTGATCAAATGAAGCAGTCA+AGG | 0.545880 | 3_1:+93128150 | Msa0388670:CDS |
| TCTAAATTGTGCAATTTGCC+TGG | 0.547347 | 3_1:+93126990 | Msa0388670:CDS |
| CACATGATTTGCAGAAGAAG+TGG | 0.551647 | 3_1:-93127139 | None:intergenic |
| GGGAAGCCCTTGCCCAAGAA+GGG | 0.569563 | 3_1:+93126394 | Msa0388670:CDS |
| TCCTATTAAGAGATATTATG+GGG | 0.572665 | 3_1:+93128546 | Msa0388670:three_prime_UTR |
| TTGGAAAGAAAGGCTAGCTA+GGG | 0.575920 | 3_1:+93128121 | Msa0388670:CDS |
| ATATACAGTGGGATTGCTGT+AGG | 0.578458 | 3_1:+93128196 | Msa0388670:CDS |
| TGTCAATGTCAATCTTGCCC+AGG | 0.582570 | 3_1:+93124673 | Msa0388670:CDS |
| TGATGCTTCTTTCATCAACT+CGG | 0.582662 | 3_1:-93126262 | None:intergenic |
| CATAACTGGTCTTTATCATG+AGG | 0.595621 | 3_1:-93124652 | None:intergenic |
| CACATTCAAAGAGTACCTGC+AGG | 0.598684 | 3_1:+93124516 | Msa0388670:CDS |
| AAGATGTTATTCAGTAAACT+GGG | 0.600665 | 3_1:-93128519 | None:intergenic |
| GCACCCAATTCAACCAGCCA+AGG | 0.608792 | 3_1:-93126835 | None:intergenic |
| AACTGGTCTTTATCATGAGG+AGG | 0.610379 | 3_1:-93124649 | None:intergenic |
| AAGAGTACCTGCAGGTGGAG+CGG | 0.611509 | 3_1:+93124524 | Msa0388670:CDS |
| ACCTCAAATATGGATCGTTG+AGG | 0.613399 | 3_1:-93128346 | None:intergenic |
| TGAAATGAACGCAAAGTACA+GGG | 0.623520 | 3_1:-93124238 | None:intergenic |
| GGTACACAGTTCTGTGAATG+GGG | 0.627407 | 3_1:+93126762 | Msa0388670:intron |
| ATGCAATCCACATATACAGT+GGG | 0.629986 | 3_1:+93128185 | Msa0388670:CDS |
| GCAGAGTGGAGTTTATTCCA+AGG | 0.631763 | 3_1:+93127918 | Msa0388670:intron |
| TGATCAAATGAAGCAGTCAA+GGG | 0.638343 | 3_1:+93128151 | Msa0388670:CDS |
| CCATGAATGCAATTGCGATG+AGG | 0.653723 | 3_1:+93126439 | Msa0388670:CDS |
| ATTCAAAGAGTACCTGCAGG+TGG | 0.677747 | 3_1:+93124519 | Msa0388670:CDS |
| TGCGAGCTTGATGGAGTCCG+TGG | 0.679546 | 3_1:+93126889 | Msa0388670:CDS |
| AATCACATGAAAAGTGACCA+CGG | 0.698927 | 3_1:-93126906 | None:intergenic |
| CCTATTAAGAGATATTATGG+GGG | 0.704335 | 3_1:+93128547 | Msa0388670:three_prime_UTR |
| TATGCAATCCACATATACAG+TGG | 0.705145 | 3_1:+93128184 | Msa0388670:CDS |
| AAAGTGTCCTATATGCAGAG+AGG | 0.740633 | 3_1:+93127220 | Msa0388670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATGTTTAAAATCAA+CGG | + | chr3_1:93124752-93124771 | Msa0388670:intron | 10.0% |
| !!! | TAAACATAGTTTAAAATTAA+TGG | - | chr3_1:93126127-93126146 | None:intergenic | 10.0% |
| !! | TAAATAAGTATAAATGAAAA+TGG | - | chr3_1:93126531-93126550 | None:intergenic | 10.0% |
| !! | TGGTTAATTAATGTTTAATT+AGG | + | chr3_1:93124463-93124482 | Msa0388670:intron | 15.0% |
| !! | ATTAATGTTTAATTAGGATT+TGG | + | chr3_1:93124469-93124488 | Msa0388670:intron | 15.0% |
| !!! | ATTTTGCTTATAATTAGTAA+CGG | - | chr3_1:93124918-93124937 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | - | chr3_1:93125020-93125039 | None:intergenic | 15.0% |
| !! | AATTAATTAATTGCTAGTAT+CGG | + | chr3_1:93125428-93125447 | Msa0388670:intron | 15.0% |
| !! | AATACAAAAGAACTTAAAAA+AGG | + | chr3_1:93125725-93125744 | Msa0388670:intron | 15.0% |
| !!! | AACATTTTAAAAAAGAATCA+TGG | - | chr3_1:93125840-93125859 | None:intergenic | 15.0% |
| !! | ACACATAATAATTTACTTAA+TGG | + | chr3_1:93126051-93126070 | Msa0388670:intron | 15.0% |
| !!! | AATTTTTTTTTTTCATAGCA+TGG | - | chr3_1:93127034-93127053 | None:intergenic | 15.0% |
| !!! | AAATTTTGTGTCATTATAAA+TGG | - | chr3_1:93127270-93127289 | None:intergenic | 15.0% |
| !! | ATCATATAATGATATACTTA+TGG | - | chr3_1:93127718-93127737 | None:intergenic | 15.0% |
| !! | AGAATTGTTCAAATAAAATT+TGG | - | chr3_1:93128460-93128479 | None:intergenic | 15.0% |
| !!! | AATTTTATTTGAACAATTCT+CGG | + | chr3_1:93128460-93128479 | Msa0388670:three_prime_UTR | 15.0% |
| !!! | AAAAGGTAAATATTCTGAAA+GGG | - | chr3_1:93124287-93124306 | None:intergenic | 20.0% |
| !! | AAAAAGGTAAATATTCTGAA+AGG | - | chr3_1:93124288-93124307 | None:intergenic | 20.0% |
| !! | TATTCAATTAATGATGTATG+TGG | - | chr3_1:93124995-93125014 | None:intergenic | 20.0% |
| !! | TATTAACCACAAATTTATGT+CGG | - | chr3_1:93125165-93125184 | None:intergenic | 20.0% |
| !! | ACATAAATTTGTGGTTAATA+AGG | + | chr3_1:93125165-93125184 | Msa0388670:intron | 20.0% |
| !! | TATATTAGTGCAATAAGTAA+TGG | + | chr3_1:93125483-93125502 | Msa0388670:intron | 20.0% |
| !! | ATCTATTGTTTAATAACTCT+TGG | + | chr3_1:93125784-93125803 | Msa0388670:intron | 20.0% |
| !!! | AGTTTTTATTCATTAACATG+CGG | + | chr3_1:93125903-93125922 | Msa0388670:intron | 20.0% |
| !! | TATGTTTAATCAAAATACTC+AGG | + | chr3_1:93126139-93126158 | Msa0388670:intron | 20.0% |
| !! | TAAGTATAAATGAAAATGGA+GGG | - | chr3_1:93126527-93126546 | None:intergenic | 20.0% |
| !! | ATAAGTATAAATGAAAATGG+AGG | - | chr3_1:93126528-93126547 | None:intergenic | 20.0% |
| !!! | TATCTCATTCATTTTCATAT+GGG | - | chr3_1:93126659-93126678 | None:intergenic | 20.0% |
| !!! | TTATCTCATTCATTTTCATA+TGG | - | chr3_1:93126660-93126679 | None:intergenic | 20.0% |
| !! | TTCATGTGATTTAAATGTAA+TGG | + | chr3_1:93126918-93126937 | Msa0388670:CDS | 20.0% |
| !!! | TAGTATTTTTGATAAATGCT+TGG | + | chr3_1:93127066-93127085 | Msa0388670:intron | 20.0% |
| !! | ATTTCGATCTCTATTAAATT+TGG | + | chr3_1:93127645-93127664 | Msa0388670:intron | 20.0% |
| !! | TTTCGATCTCTATTAAATTT+GGG | + | chr3_1:93127646-93127665 | Msa0388670:intron | 20.0% |
| !! | TATCATTATATGATTATCAC+AGG | + | chr3_1:93127724-93127743 | Msa0388670:intron | 20.0% |
| !! | ATTATGCTATAAATATCCAA+AGG | - | chr3_1:93127848-93127867 | None:intergenic | 20.0% |
| !! | GTCTTGATTATTAAAAACAA+AGG | - | chr3_1:93127880-93127899 | None:intergenic | 20.0% |
| !!! | ATGAAATGTTATTTTTGTAC+TGG | - | chr3_1:93127991-93128010 | None:intergenic | 20.0% |
| !!! | ATCAAAAACCATTTTCTATT+TGG | - | chr3_1:93128275-93128294 | None:intergenic | 20.0% |
| !! | AAAATAAAAACGAGAACTTA+GGG | + | chr3_1:93128310-93128329 | Msa0388670:three_prime_UTR | 20.0% |
| !! | AGAAAAGAAAATTACTGTAT+AGG | - | chr3_1:93128385-93128404 | None:intergenic | 20.0% |
| !! | TTTGGAAGTTTAAATATGAA+AGG | - | chr3_1:93128442-93128461 | None:intergenic | 20.0% |
| !! | AATCCTATTAAGAGATATTA+TGG | + | chr3_1:93128544-93128563 | Msa0388670:three_prime_UTR | 20.0% |
| !! | ATCCTATTAAGAGATATTAT+GGG | + | chr3_1:93128545-93128564 | Msa0388670:three_prime_UTR | 20.0% |
| !!! | TATTTTAGTGACAAAATATG+TGG | + | chr3_1:93128578-93128597 | Msa0388670:three_prime_UTR | 20.0% |
| !!! | ATTTTCGAACACTGATTTAT+TGG | + | chr3_1:93124443-93124462 | Msa0388670:intron | 25.0% |
| ! | TCAATATTGATATATTCCCT+GGG | - | chr3_1:93125052-93125071 | None:intergenic | 25.0% |
| ! | TTCAATATTGATATATTCCC+TGG | - | chr3_1:93125053-93125072 | None:intergenic | 25.0% |
| ! | AATTAATTATTCCATAACCC+TGG | - | chr3_1:93125416-93125435 | None:intergenic | 25.0% |
| ! | AGTATAATGAGAATAAGACT+TGG | + | chr3_1:93125526-93125545 | Msa0388670:intron | 25.0% |
| ! | GTATAATGAGAATAAGACTT+GGG | + | chr3_1:93125527-93125546 | Msa0388670:intron | 25.0% |
| ! | TGCTTAAAATAAGCCTAAAA+TGG | + | chr3_1:93125558-93125577 | Msa0388670:intron | 25.0% |
| ! | TAAAATAAGCCTAAAATGGT+TGG | + | chr3_1:93125562-93125581 | Msa0388670:intron | 25.0% |
| !! | GTGTATGGAAAAAATCTTTT+TGG | + | chr3_1:93126009-93126028 | Msa0388670:intron | 25.0% |
| ! | AAATTAATGGCAATTCACAA+AGG | - | chr3_1:93126114-93126133 | None:intergenic | 25.0% |
| !!! | AGTCTTTTTAATTAACCAGA+AGG | + | chr3_1:93126172-93126191 | Msa0388670:intron | 25.0% |
| ! | AAGTATAAATGAAAATGGAG+GGG | - | chr3_1:93126526-93126545 | None:intergenic | 25.0% |
| ! | ACGATCTATAATGAATACAA+GGG | + | chr3_1:93126613-93126632 | Msa0388670:intron | 25.0% |
| ! | TGAAAATGAATGAGATAACA+AGG | + | chr3_1:93126662-93126681 | Msa0388670:intron | 25.0% |
| !!! | ATCCTTTGTTATTTTACTAC+AGG | + | chr3_1:93126741-93126760 | Msa0388670:intron | 25.0% |
| ! | TACCTGTAGTAAAATAACAA+AGG | - | chr3_1:93126746-93126765 | None:intergenic | 25.0% |
| ! | TATTCAAGCTTAATAGAATC+TGG | - | chr3_1:93126967-93126986 | None:intergenic | 25.0% |
| ! | AATTGACCCCATTTAAAAAT+CGG | - | chr3_1:93127444-93127463 | None:intergenic | 25.0% |
| ! | ACATCAATGAAATTCAAGAT+AGG | - | chr3_1:93127758-93127777 | None:intergenic | 25.0% |
| ! | TATCTTGAATTTCATTGATG+TGG | + | chr3_1:93127757-93127776 | Msa0388670:intron | 25.0% |
| ! | TAAATATCCAAAGGTTAACT+AGG | - | chr3_1:93127839-93127858 | None:intergenic | 25.0% |
| !!! | TAGGTTTTGTTGTTATGATT+TGG | + | chr3_1:93128215-93128234 | Msa0388670:exon | 25.0% |
| !! | TTTTTGATCAAAGAGAGAAA+CGG | + | chr3_1:93128287-93128306 | Msa0388670:three_prime_UTR | 25.0% |
| ! | GAAAATAAAAACGAGAACTT+AGG | + | chr3_1:93128309-93128328 | Msa0388670:three_prime_UTR | 25.0% |
| !! | TAATTTTCTTTTCTCTCTCT+TGG | + | chr3_1:93128391-93128410 | Msa0388670:three_prime_UTR | 25.0% |
| ! | AAGATGTTATTCAGTAAACT+GGG | - | chr3_1:93128522-93128541 | None:intergenic | 25.0% |
| ! | TAAGATGTTATTCAGTAAAC+TGG | - | chr3_1:93128523-93128542 | None:intergenic | 25.0% |
| ! | TCCTATTAAGAGATATTATG+GGG | + | chr3_1:93128546-93128565 | Msa0388670:three_prime_UTR | 25.0% |
| GGATGAAATGAATAGGAAAA+AGG | - | chr3_1:93124304-93124323 | None:intergenic | 30.0% | |
| GTAAAAATGAAAAAACGACG+AGG | - | chr3_1:93124328-93124347 | None:intergenic | 30.0% | |
| GGAAATAGCGAAATGAAATT+CGG | + | chr3_1:93124490-93124509 | Msa0388670:exon | 30.0% | |
| GTGCACATATTGAATATAAC+AGG | + | chr3_1:93124569-93124588 | Msa0388670:CDS | 30.0% | |
| AAGATTGACATTGACATAAC+TGG | - | chr3_1:93124669-93124688 | None:intergenic | 30.0% | |
| AATGTAAGCTTTCATTTGAG+TGG | + | chr3_1:93124796-93124815 | Msa0388670:intron | 30.0% | |
| ! | TGCTTATAATTAGTAACGGA+GGG | - | chr3_1:93124914-93124933 | None:intergenic | 30.0% |
| TTGCTTATAATTAGTAACGG+AGG | - | chr3_1:93124915-93124934 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATAATA+TGG | - | chr3_1:93124983-93125002 | None:intergenic | 30.0% | |
| TTGCTTATAATTAGAAACCC+AGG | + | chr3_1:93125032-93125051 | Msa0388670:intron | 30.0% | |
| TGCTTATAATTAGAAACCCA+GGG | + | chr3_1:93125033-93125052 | Msa0388670:intron | 30.0% | |
| ! | AAATCTGTGTTGATCAAGTT+CGG | - | chr3_1:93125094-93125113 | None:intergenic | 30.0% |
| ACATCATTAACAACGATTTC+AGG | + | chr3_1:93125116-93125135 | Msa0388670:intron | 30.0% | |
| GGTTAATAAGGTTTCATAGA+TGG | + | chr3_1:93125177-93125196 | Msa0388670:intron | 30.0% | |
| ! | AGCTAATGAAGTGTTAGATT+TGG | - | chr3_1:93125222-93125241 | None:intergenic | 30.0% |
| AGGTTCCTATTTAATGTTCA+TGG | + | chr3_1:93125362-93125381 | Msa0388670:intron | 30.0% | |
| GGTTCCTATTTAATGTTCAT+GGG | + | chr3_1:93125363-93125382 | Msa0388670:intron | 30.0% | |
| TGATGAAAATTCTACAACGA+CGG | - | chr3_1:93125607-93125626 | None:intergenic | 30.0% | |
| ATGAAAGTTTCCTATGTAGA+TGG | + | chr3_1:93125627-93125646 | Msa0388670:intron | 30.0% | |
| ! | CAAAACTCCTTTTAAACTTG+TGG | + | chr3_1:93125689-93125708 | Msa0388670:intron | 30.0% |
| TGAACATCCACAAGTTTAAA+AGG | - | chr3_1:93125699-93125718 | None:intergenic | 30.0% | |
| TTTAAACTTGTGGATGTTCA+TGG | + | chr3_1:93125699-93125718 | Msa0388670:intron | 30.0% | |
| CTTAAAAAAGGATTGAGATG+CGG | + | chr3_1:93125737-93125756 | Msa0388670:intron | 30.0% | |
| !! | TACTCTCAGCTTTAAGTAAT+AGG | - | chr3_1:93125884-93125903 | None:intergenic | 30.0% |
| TTATTCATTAACATGCGGTT+AGG | + | chr3_1:93125908-93125927 | Msa0388670:intron | 30.0% | |
| !!! | CCAGTGTTTTAAAAATGACA+GGG | + | chr3_1:93126374-93126393 | Msa0388670:CDS | 30.0% |
| AATTAGAATTCTCCCTTCTT+GGG | - | chr3_1:93126409-93126428 | None:intergenic | 30.0% | |
| AGTATAAATGAAAATGGAGG+GGG | - | chr3_1:93126525-93126544 | None:intergenic | 30.0% | |
| CACGATCTATAATGAATACA+AGG | + | chr3_1:93126612-93126631 | Msa0388670:intron | 30.0% | |
| !!! | TTTTTTTTCATAGCATGGCA+TGG | - | chr3_1:93127029-93127048 | None:intergenic | 30.0% |
| ATACCATCCTTAAAACAGAA+AGG | - | chr3_1:93127349-93127368 | None:intergenic | 30.0% | |
| !!! | TACCTCACCGATTTTTAAAT+GGG | + | chr3_1:93127434-93127453 | Msa0388670:intron | 30.0% |
| TTGCTTAAAATTAGAGTAGC+AGG | - | chr3_1:93127538-93127557 | None:intergenic | 30.0% | |
| TAATGTTGTGTCCATGATAA+AGG | - | chr3_1:93127806-93127825 | None:intergenic | 30.0% | |
| CATTTATCCTAGTTAACCTT+TGG | + | chr3_1:93127829-93127848 | Msa0388670:intron | 30.0% | |
| CACTCTGCATAAAAAAATGA+TGG | - | chr3_1:93127906-93127925 | None:intergenic | 30.0% | |
| !!! | CATCATTTTTTTATGCAGAG+TGG | + | chr3_1:93127904-93127923 | Msa0388670:intron | 30.0% |
| ! | AGCTACTTTCAATATTTCTC+AGG | + | chr3_1:93128087-93128106 | Msa0388670:intron | 30.0% |
| GCAAAGATTATTGGAAAGAA+AGG | + | chr3_1:93128111-93128130 | Msa0388670:CDS | 30.0% | |
| CTCCTACAAAAATGTTTCAA+CGG | - | chr3_1:93128241-93128260 | None:intergenic | 30.0% | |
| AGCAAATGCCAAATAGAAAA+TGG | + | chr3_1:93128264-93128283 | Msa0388670:three_prime_UTR | 30.0% | |
| ATCAAACTCTACCTCAAATA+TGG | - | chr3_1:93128359-93128378 | None:intergenic | 30.0% | |
| CCTATTAAGAGATATTATGG+GGG | + | chr3_1:93128547-93128566 | Msa0388670:three_prime_UTR | 30.0% | |
| TACGAAGTACAGTTTCGTTA+GGG | - | chr3_1:93124218-93124237 | None:intergenic | 35.0% | |
| TGAAATGAACGCAAAGTACA+GGG | - | chr3_1:93124241-93124260 | None:intergenic | 35.0% | |
| ATGAAATGAACGCAAAGTAC+AGG | - | chr3_1:93124242-93124261 | None:intergenic | 35.0% | |
| AAAATGAAAAAACGACGAGG+AGG | - | chr3_1:93124325-93124344 | None:intergenic | 35.0% | |
| !! | CATAACTGGTCTTTATCATG+AGG | - | chr3_1:93124655-93124674 | None:intergenic | 35.0% |
| ACATAAAGCGTAAAACAGAC+AGG | - | chr3_1:93124704-93124723 | None:intergenic | 35.0% | |
| GGTTCTTACAGAAATGTCAT+TGG | + | chr3_1:93124831-93124850 | Msa0388670:intron | 35.0% | |
| TTCACACACGAGTAGTTTAA+TGG | + | chr3_1:93124883-93124902 | Msa0388670:intron | 35.0% | |
| ! | CTTATAATTAGTAACGGAGG+GGG | - | chr3_1:93124912-93124931 | None:intergenic | 35.0% |
| ! | GCTTATAATTAGTAACGGAG+GGG | - | chr3_1:93124913-93124932 | None:intergenic | 35.0% |
| !! | AAGTTCGGTTGATGGTTAAT+GGG | - | chr3_1:93125079-93125098 | None:intergenic | 35.0% |
| GTTAAGCCGACATAAATTTG+TGG | + | chr3_1:93125156-93125175 | Msa0388670:intron | 35.0% | |
| ATTAGCTAATCCCACTTAGT+GGG | + | chr3_1:93125235-93125254 | Msa0388670:intron | 35.0% | |
| GAGAATAAGACTTGGGAATT+AGG | + | chr3_1:93125534-93125553 | Msa0388670:intron | 35.0% | |
| AATAAGCCTAAAATGGTTGG+TGG | + | chr3_1:93125565-93125584 | Msa0388670:intron | 35.0% | |
| ATAAGCCTAAAATGGTTGGT+GGG | + | chr3_1:93125566-93125585 | Msa0388670:intron | 35.0% | |
| AAGAAGAGAACCATCTACAT+AGG | - | chr3_1:93125640-93125659 | None:intergenic | 35.0% | |
| TGATGCTTCTTTCATCAACT+CGG | - | chr3_1:93126265-93126284 | None:intergenic | 35.0% | |
| !! | AAAGAAGCATCAGATATTGC+AGG | + | chr3_1:93126273-93126292 | Msa0388670:CDS | 35.0% |
| ! | CTTTTGCAATGTGAAGATGA+AGG | - | chr3_1:93126326-93126345 | None:intergenic | 35.0% |
| CTTCATCTTCACATTGCAAA+AGG | + | chr3_1:93126324-93126343 | Msa0388670:CDS | 35.0% | |
| !!! | GCCAGTGTTTTAAAAATGAC+AGG | + | chr3_1:93126373-93126392 | Msa0388670:CDS | 35.0% |
| !!! | CCCTGTCATTTTTAAAACAC+TGG | - | chr3_1:93126377-93126396 | None:intergenic | 35.0% |
| CAATTAGAATTCTCCCTTCT+TGG | - | chr3_1:93126410-93126429 | None:intergenic | 35.0% | |
| ! | TTGAACTTTTACACTCACCT+TGG | + | chr3_1:93126818-93126837 | Msa0388670:CDS | 35.0% |
| ! | GCTTTTTACCTGAATTCAAG+TGG | + | chr3_1:93126856-93126875 | Msa0388670:CDS | 35.0% |
| AATCACATGAAAAGTGACCA+CGG | - | chr3_1:93126909-93126928 | None:intergenic | 35.0% | |
| TCTAAATTGTGCAATTTGCC+TGG | + | chr3_1:93126990-93127009 | Msa0388670:CDS | 35.0% | |
| ACAAAATCCTACCATATCAC+AGG | - | chr3_1:93127092-93127111 | None:intergenic | 35.0% | |
| ! | AATCCATATGCATTGAGTTG+TGG | + | chr3_1:93127116-93127135 | Msa0388670:CDS | 35.0% |
| ATTCATACCTCTCTGCATAT+AGG | - | chr3_1:93127230-93127249 | None:intergenic | 35.0% | |
| TCACTCTAGATATCAATCAC+CGG | + | chr3_1:93127383-93127402 | Msa0388670:intron | 35.0% | |
| !!! | GTACCTCACCGATTTTTAAA+TGG | + | chr3_1:93127433-93127452 | Msa0388670:intron | 35.0% |
| !!! | ACCTCACCGATTTTTAAATG+GGG | + | chr3_1:93127435-93127454 | Msa0388670:intron | 35.0% |
| TTAAACTTCTTCAAACCGAC+TGG | - | chr3_1:93127471-93127490 | None:intergenic | 35.0% | |
| AAGCAACTCTTGCTTGTATA+AGG | + | chr3_1:93127552-93127571 | Msa0388670:intron | 35.0% | |
| ATTACAGAAGTTTGTGCATG+AGG | - | chr3_1:93127599-93127618 | None:intergenic | 35.0% | |
| TTTCATTGATGTGGCTGTTA+TGG | + | chr3_1:93127766-93127785 | Msa0388670:intron | 35.0% | |
| TCGATCTGCTTATGAAAAGA+AGG | + | chr3_1:93127959-93127978 | Msa0388670:CDS | 35.0% | |
| ATGTGCATACATGAATGCTA+TGG | - | chr3_1:93128055-93128074 | None:intergenic | 35.0% | |
| TTCTCAGGTGCAAAGATTAT+TGG | + | chr3_1:93128102-93128121 | Msa0388670:intron | 35.0% | |
| TGATCAAATGAAGCAGTCAA+GGG | + | chr3_1:93128151-93128170 | Msa0388670:CDS | 35.0% | |
| TATGCAATCCACATATACAG+TGG | + | chr3_1:93128184-93128203 | Msa0388670:CDS | 35.0% | |
| ATGCAATCCACATATACAGT+GGG | + | chr3_1:93128185-93128204 | Msa0388670:CDS | 35.0% | |
| ! | AAAGAGACTAGCAATTTGCT+TGG | + | chr3_1:93128487-93128506 | Msa0388670:three_prime_UTR | 35.0% |
| CCCCCATAATATCTCTTAAT+AGG | - | chr3_1:93128550-93128569 | None:intergenic | 35.0% | |
| GTACGAAGTACAGTTTCGTT+AGG | - | chr3_1:93124219-93124238 | None:intergenic | 40.0% | |
| GCGTTCATTTCATTCTTCTC+AGG | + | chr3_1:93124249-93124268 | Msa0388670:five_prime_UTR | 40.0% | |
| ACGAGGAGGATGAAATGAAT+AGG | - | chr3_1:93124311-93124330 | None:intergenic | 40.0% | |
| GATCTCATACATGTGATGTG+AGG | + | chr3_1:93124388-93124407 | Msa0388670:intron | 40.0% | |
| !! | AACTGGTCTTTATCATGAGG+AGG | - | chr3_1:93124652-93124671 | None:intergenic | 40.0% |
| AAAACAGACAGGACATACCT+GGG | - | chr3_1:93124693-93124712 | None:intergenic | 40.0% | |
| TAAAACAGACAGGACATACC+TGG | - | chr3_1:93124694-93124713 | None:intergenic | 40.0% | |
| !! | CAAGTTCGGTTGATGGTTAA+TGG | - | chr3_1:93125080-93125099 | None:intergenic | 40.0% |
| TGTTGATCAAGTTCGGTTGA+TGG | - | chr3_1:93125087-93125106 | None:intergenic | 40.0% | |
| CATTAGCTAATCCCACTTAG+TGG | + | chr3_1:93125234-93125253 | Msa0388670:intron | 40.0% | |
| TAATCCCACTTAGTGGGATA+AGG | + | chr3_1:93125241-93125260 | Msa0388670:intron | 40.0% | |
| ! | TTATGTGCCCTTTTTCCAGA+TGG | + | chr3_1:93125331-93125350 | Msa0388670:intron | 40.0% |
| CACCTTACCATCTGGAAAAA+GGG | - | chr3_1:93125341-93125360 | None:intergenic | 40.0% | |
| CGGTCCCATGAACATTAAAT+AGG | - | chr3_1:93125370-93125389 | None:intergenic | 40.0% | |
| ! | TAAGCCTAAAATGGTTGGTG+GGG | + | chr3_1:93125567-93125586 | Msa0388670:intron | 40.0% |
| ATAGGCACTATGTGTCAGTT+TGG | - | chr3_1:93125866-93125885 | None:intergenic | 40.0% | |
| ! | GCTTAAGGTAGTCTTGCTTA+AGG | - | chr3_1:93125957-93125976 | None:intergenic | 40.0% |
| AAGACTACCTTAAGCAAGAC+TGG | + | chr3_1:93125962-93125981 | Msa0388670:intron | 40.0% | |
| CGATCTTTGACTCTTGTGTA+TGG | + | chr3_1:93125994-93126013 | Msa0388670:intron | 40.0% | |
| ! | ACTTAATGGTTTGCCGTCTT+CGG | + | chr3_1:93126065-93126084 | Msa0388670:intron | 40.0% |
| TTGCAAAGAATGTCCGAAGA+CGG | - | chr3_1:93126081-93126100 | None:intergenic | 40.0% | |
| ACTGCATAAAGTGAACCTTC+TGG | - | chr3_1:93126190-93126209 | None:intergenic | 40.0% | |
| AGGTACACAGTTCTGTGAAT+GGG | + | chr3_1:93126761-93126780 | Msa0388670:intron | 40.0% | |
| CATCTTGTCCACTTGAATTC+AGG | - | chr3_1:93126867-93126886 | None:intergenic | 40.0% | |
| CTGAATTCAAGTGGACAAGA+TGG | + | chr3_1:93126865-93126884 | Msa0388670:CDS | 40.0% | |
| CATGGAAATAGGATCTTACC+AGG | - | chr3_1:93127011-93127030 | None:intergenic | 40.0% | |
| TCATAGCATGGCATGGAAAT+AGG | - | chr3_1:93127022-93127041 | None:intergenic | 40.0% | |
| TAAATGCTTGGCCTGTGATA+TGG | + | chr3_1:93127078-93127097 | Msa0388670:intron | 40.0% | |
| ! | CACATGATTTGCAGAAGAAG+TGG | - | chr3_1:93127142-93127161 | None:intergenic | 40.0% |
| CATATAGGACACTTTGACTC+TGG | - | chr3_1:93127215-93127234 | None:intergenic | 40.0% | |
| ! | AAAGTGTCCTATATGCAGAG+AGG | + | chr3_1:93127220-93127239 | Msa0388670:CDS | 40.0% |
| TACTAGTTCAGTTGTGCATC+TGG | + | chr3_1:93127289-93127308 | Msa0388670:intron | 40.0% | |
| CATCTGGACAGAAATGTGTT+TGG | + | chr3_1:93127305-93127324 | Msa0388670:intron | 40.0% | |
| !! | GACAGAAATGTGTTTGGTGT+AGG | + | chr3_1:93127311-93127330 | Msa0388670:intron | 40.0% |
| ! | TGGTCAGCCTTTCTGTTTTA+AGG | + | chr3_1:93127339-93127358 | Msa0388670:intron | 40.0% |
| !!! | CAGCCTTTCTGTTTTAAGGA+TGG | + | chr3_1:93127343-93127362 | Msa0388670:intron | 40.0% |
| ! | GGTGATTGATATCTAGAGTG+AGG | - | chr3_1:93127384-93127403 | None:intergenic | 40.0% |
| ACCCCATTTAAAAATCGGTG+AGG | - | chr3_1:93127439-93127458 | None:intergenic | 40.0% | |
| !! | AGAAGGAGAGAGTTGATAGT+TGG | - | chr3_1:93127503-93127522 | None:intergenic | 40.0% |
| ! | TATGATTATCACAGGCGTTG+TGG | + | chr3_1:93127732-93127751 | Msa0388670:intron | 40.0% |
| GATGTGGCTGTTATGGAATT+CGG | + | chr3_1:93127773-93127792 | Msa0388670:intron | 40.0% | |
| ATGTGGCTGTTATGGAATTC+GGG | + | chr3_1:93127774-93127793 | Msa0388670:intron | 40.0% | |
| TCGGGTAATGTCCTTTATCA+TGG | + | chr3_1:93127792-93127811 | Msa0388670:intron | 40.0% | |
| ! | GCAGATCGAGTTCTAACATT+CGG | - | chr3_1:93127948-93127967 | None:intergenic | 40.0% |
| ! | ATTGGAAAGAAAGGCTAGCT+AGG | + | chr3_1:93128120-93128139 | Msa0388670:CDS | 40.0% |
| ! | TTGGAAAGAAAGGCTAGCTA+GGG | + | chr3_1:93128121-93128140 | Msa0388670:CDS | 40.0% |
| GTGATCAAATGAAGCAGTCA+AGG | + | chr3_1:93128150-93128169 | Msa0388670:CDS | 40.0% | |
| ! | TGAAGCAGTCAAGGGAATTT+TGG | + | chr3_1:93128159-93128178 | Msa0388670:CDS | 40.0% |
| ATATACAGTGGGATTGCTGT+AGG | + | chr3_1:93128196-93128215 | Msa0388670:CDS | 40.0% | |
| ! | GGCCGTTGAAACATTTTTGT+AGG | + | chr3_1:93128236-93128255 | Msa0388670:three_prime_UTR | 40.0% |
| CCTCAAATATGGATCGTTGA+GGG | - | chr3_1:93128348-93128367 | None:intergenic | 40.0% | |
| ACCTCAAATATGGATCGTTG+AGG | - | chr3_1:93128349-93128368 | None:intergenic | 40.0% | |
| CAAGGTTGTCGAGAAGTGAA+TGG | - | chr3_1:93124194-93124213 | None:intergenic | 45.0% | |
| GTACAGTTTCGTTAGGGTCA+AGG | - | chr3_1:93124212-93124231 | None:intergenic | 45.0% | |
| !! | CACATTCAAAGAGTACCTGC+AGG | + | chr3_1:93124516-93124535 | Msa0388670:CDS | 45.0% |
| !! | ATTCAAAGAGTACCTGCAGG+TGG | + | chr3_1:93124519-93124538 | Msa0388670:CDS | 45.0% |
| TGTCAATGTCAATCTTGCCC+AGG | + | chr3_1:93124673-93124692 | Msa0388670:CDS | 45.0% | |
| TTTGAGTGGACGATTCAACG+TGG | + | chr3_1:93124810-93124829 | Msa0388670:intron | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr3_1:93125248-93125267 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | - | chr3_1:93125249-93125268 | None:intergenic | 45.0% |
| ! | TGCCCTTTTTCCAGATGGTA+AGG | + | chr3_1:93125336-93125355 | Msa0388670:intron | 45.0% |
| GCACCTTACCATCTGGAAAA+AGG | - | chr3_1:93125342-93125361 | None:intergenic | 45.0% | |
| ! | TTTTCCAGATGGTAAGGTGC+AGG | + | chr3_1:93125342-93125361 | Msa0388670:intron | 45.0% |
| TAATGTTCATGGGACCGAAC+CGG | + | chr3_1:93125373-93125392 | Msa0388670:intron | 45.0% | |
| ATTATTCCATAACCCTGGCC+AGG | - | chr3_1:93125411-93125430 | None:intergenic | 45.0% | |
| CCTCTAACCAGTCTTGCTTA+AGG | - | chr3_1:93125972-93125991 | None:intergenic | 45.0% | |
| ! | CCTTAAGCAAGACTGGTTAG+AGG | + | chr3_1:93125969-93125988 | Msa0388670:intron | 45.0% |
| ATGGCAATTCACAAAGGCTC+TGG | - | chr3_1:93126108-93126127 | None:intergenic | 45.0% | |
| TCAACTCGGAGAAGAACTTC+TGG | - | chr3_1:93126251-93126270 | None:intergenic | 45.0% | |
| AATTCTCCCTTCTTGGGCAA+GGG | - | chr3_1:93126403-93126422 | None:intergenic | 45.0% | |
| CCTCATCGCAATTGCATTCA+TGG | - | chr3_1:93126442-93126461 | None:intergenic | 45.0% | |
| CCATGAATGCAATTGCGATG+AGG | + | chr3_1:93126439-93126458 | Msa0388670:CDS | 45.0% | |
| CAGGTACACAGTTCTGTGAA+TGG | + | chr3_1:93126760-93126779 | Msa0388670:intron | 45.0% | |
| GGTACACAGTTCTGTGAATG+GGG | + | chr3_1:93126762-93126781 | Msa0388670:intron | 45.0% | |
| ! | ACTTTTACACTCACCTTGGC+TGG | + | chr3_1:93126822-93126841 | Msa0388670:CDS | 45.0% |
| ! | TCACCTTGGCTGGTTGAATT+GGG | + | chr3_1:93126832-93126851 | Msa0388670:CDS | 45.0% |
| TGGCCACAACTCAATGCATA+TGG | - | chr3_1:93127122-93127141 | None:intergenic | 45.0% | |
| TGCATCTGTGATGACTTTCC+AGG | + | chr3_1:93127172-93127191 | Msa0388670:CDS | 45.0% | |
| GCATCTGTGATGACTTTCCA+GGG | + | chr3_1:93127173-93127192 | Msa0388670:CDS | 45.0% | |
| ACTCTGGACTTGCAGCTTTA+AGG | - | chr3_1:93127199-93127218 | None:intergenic | 45.0% | |
| !! | GAAATGTGTTTGGTGTAGGC+TGG | + | chr3_1:93127315-93127334 | Msa0388670:intron | 45.0% |
| ! | ATATCTAGAGTGAGGCAGAC+GGG | - | chr3_1:93127376-93127395 | None:intergenic | 45.0% |
| ! | GATATCTAGAGTGAGGCAGA+CGG | - | chr3_1:93127377-93127396 | None:intergenic | 45.0% |
| AGAGTAGCAGGCTTAAGAGA+GGG | - | chr3_1:93127526-93127545 | None:intergenic | 45.0% | |
| TAGAGTAGCAGGCTTAAGAG+AGG | - | chr3_1:93127527-93127546 | None:intergenic | 45.0% | |
| GCACATTAACTACGAGCGAT+AGG | - | chr3_1:93127674-93127693 | None:intergenic | 45.0% | |
| GCAGAGTGGAGTTTATTCCA+AGG | + | chr3_1:93127918-93127937 | Msa0388670:intron | 45.0% | |
| TTCTAACATTCGGACTGCCT+TGG | - | chr3_1:93127938-93127957 | None:intergenic | 45.0% | |
| CAGCAATCCCACTGTATATG+TGG | - | chr3_1:93128195-93128214 | None:intergenic | 45.0% | |
| CGAGAACTTAGGGAAGTTAG+TGG | + | chr3_1:93128320-93128339 | Msa0388670:three_prime_UTR | 45.0% | |
| CCCTCAACGATCCATATTTG+AGG | + | chr3_1:93128345-93128364 | Msa0388670:three_prime_UTR | 45.0% | |
| ! | CGTGTGTGAACTGTGTTGAC+AGG | - | chr3_1:93124873-93124892 | None:intergenic | 50.0% |
| AATGTTCATGGGACCGAACC+GGG | + | chr3_1:93125374-93125393 | Msa0388670:intron | 50.0% | |
| ! | CTCACCCCACCAACCATTTT+AGG | - | chr3_1:93125574-93125593 | None:intergenic | 50.0% |
| TTCTGGTCGCATACTGCAAG+TGG | - | chr3_1:93126234-93126253 | None:intergenic | 50.0% | |
| GAATTCTCCCTTCTTGGGCA+AGG | - | chr3_1:93126404-93126423 | None:intergenic | 50.0% | |
| ! | CTCACCTTGGCTGGTTGAAT+TGG | + | chr3_1:93126831-93126850 | Msa0388670:CDS | 50.0% |
| CAAGATGGTTGCGAGCTTGA+TGG | + | chr3_1:93126880-93126899 | Msa0388670:CDS | 50.0% | |
| TGCTTGGCCTGTGATATGGT+AGG | + | chr3_1:93127082-93127101 | Msa0388670:intron | 50.0% | |
| !! | TGTGTTTGGTGTAGGCTGGT+TGG | + | chr3_1:93127319-93127338 | Msa0388670:intron | 50.0% |
| ! | TATCTAGAGTGAGGCAGACG+GGG | - | chr3_1:93127375-93127394 | None:intergenic | 50.0% |
| TCCCCAACCACGACTACAAT+CGG | + | chr3_1:93127409-93127428 | Msa0388670:intron | 50.0% | |
| TCCGATTGTAGTCGTGGTTG+GGG | - | chr3_1:93127413-93127432 | None:intergenic | 50.0% | |
| CTCCGATTGTAGTCGTGGTT+GGG | - | chr3_1:93127414-93127433 | None:intergenic | 50.0% | |
| ACTCCGATTGTAGTCGTGGT+TGG | - | chr3_1:93127415-93127434 | None:intergenic | 50.0% | |
| AGGTACTCCGATTGTAGTCG+TGG | - | chr3_1:93127419-93127438 | None:intergenic | 50.0% | |
| TGGGGTCAATTCTTGCCAGT+CGG | + | chr3_1:93127453-93127472 | Msa0388670:intron | 50.0% | |
| GCATGAGGCTGACACTTGTA+AGG | - | chr3_1:93127584-93127603 | None:intergenic | 50.0% | |
| ! | GAAAGGCTAGCTAGGGAAAG+AGG | + | chr3_1:93128128-93128147 | Msa0388670:CDS | 50.0% |
| !! | AAGAGTACCTGCAGGTGGAG+CGG | + | chr3_1:93124524-93124543 | Msa0388670:CDS | 55.0% |
| GGAACCTGCACCTTACCATC+TGG | - | chr3_1:93125349-93125368 | None:intergenic | 55.0% | |
| TTCCTTCCTGGCCAGGGTTA+TGG | + | chr3_1:93125402-93125421 | Msa0388670:intron | 55.0% | |
| TTCCATAACCCTGGCCAGGA+AGG | - | chr3_1:93125407-93125426 | None:intergenic | 55.0% | |
| TAACATGCGGTTAGGCCGAG+TGG | + | chr3_1:93125916-93125935 | Msa0388670:intron | 55.0% | |
| !! | AGGCCGAGTGGTAATGGACT+CGG | + | chr3_1:93125928-93125947 | Msa0388670:intron | 55.0% |
| TGCCCGAGTCCATTACCACT+CGG | - | chr3_1:93125934-93125953 | None:intergenic | 55.0% | |
| GCACCCAATTCAACCAGCCA+AGG | - | chr3_1:93126838-93126857 | None:intergenic | 55.0% | |
| !! | GACTTGCAGCTTTAAGGCCC+TGG | - | chr3_1:93127193-93127212 | None:intergenic | 55.0% |
| TAGTCGTGGTTGGGGATCTC+CGG | - | chr3_1:93127405-93127424 | None:intergenic | 55.0% | |
| GCAGGCTTAAGAGAGGGAGA+AGG | - | chr3_1:93127520-93127539 | None:intergenic | 55.0% | |
| ! | AGAGTACCTGCAGGTGGAGC+GGG | + | chr3_1:93124525-93124544 | Msa0388670:CDS | 60.0% |
| GGAAGGAACCAGTCCCGGTT+CGG | - | chr3_1:93125390-93125409 | None:intergenic | 60.0% | |
| !! | AACCGGGACTGGTTCCTTCC+TGG | + | chr3_1:93125390-93125409 | Msa0388670:intron | 60.0% |
| ! | GACTGGTTCCTTCCTGGCCA+GGG | + | chr3_1:93125396-93125415 | Msa0388670:intron | 60.0% |
| GCGGTTAGGCCGAGTGGTAA+TGG | + | chr3_1:93125922-93125941 | Msa0388670:intron | 60.0% | |
| !! | GGCCGAGTGGTAATGGACTC+GGG | + | chr3_1:93125929-93125948 | Msa0388670:intron | 60.0% |
| AGGGAAGCCCTTGCCCAAGA+AGG | + | chr3_1:93126393-93126412 | Msa0388670:CDS | 60.0% | |
| GGGAAGCCCTTGCCCAAGAA+GGG | + | chr3_1:93126394-93126413 | Msa0388670:CDS | 60.0% | |
| TGCGAGCTTGATGGAGTCCG+TGG | + | chr3_1:93126889-93126908 | Msa0388670:CDS | 60.0% | |
| GGTGGAGCGGGAGTGGCTAT+TGG | + | chr3_1:93124537-93124556 | Msa0388670:CDS | 65.0% | |
| TCATGGGACCGAACCGGGAC+TGG | + | chr3_1:93125379-93125398 | Msa0388670:intron | 65.0% | |
| GGCCAGGAAGGAACCAGTCC+CGG | - | chr3_1:93125395-93125414 | None:intergenic | 65.0% | |
| !! | GGACTGGTTCCTTCCTGGCC+AGG | + | chr3_1:93125395-93125414 | Msa0388670:intron | 65.0% |
| ACCTGCAGGTGGAGCGGGAG+TGG | + | chr3_1:93124530-93124549 | Msa0388670:CDS | 70.0% | |
| GCCACTCCCGCTCCACCTGC+AGG | - | chr3_1:93124534-93124553 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 93124106 | 93128602 | 93124106 | ID=Msa0388670;Name=Msa0388670 |
| chr3_1 | mRNA | 93124106 | 93128602 | 93124106 | ID=Msa0388670-mRNA-1;Parent=Msa0388670;Name=Msa0388670-mRNA-1;_AED=0.14;_eAED=0.14;_QI=182|1|1|1|0.83|0.71|7|385|330 |
| chr3_1 | exon | 93124106 | 93124270 | 93124106 | ID=Msa0388670-mRNA-1:exon:26273;Parent=Msa0388670-mRNA-1 |
| chr3_1 | exon | 93124485 | 93124694 | 93124485 | ID=Msa0388670-mRNA-1:exon:26274;Parent=Msa0388670-mRNA-1 |
| chr3_1 | exon | 93126241 | 93126485 | 93126241 | ID=Msa0388670-mRNA-1:exon:26275;Parent=Msa0388670-mRNA-1 |
| chr3_1 | exon | 93126763 | 93127011 | 93126763 | ID=Msa0388670-mRNA-1:exon:26276;Parent=Msa0388670-mRNA-1 |
| chr3_1 | exon | 93127104 | 93127241 | 93127104 | ID=Msa0388670-mRNA-1:exon:26277;Parent=Msa0388670-mRNA-1 |
| chr3_1 | exon | 93127922 | 93127980 | 93127922 | ID=Msa0388670-mRNA-1:exon:26278;Parent=Msa0388670-mRNA-1 |
| chr3_1 | exon | 93128109 | 93128602 | 93128109 | ID=Msa0388670-mRNA-1:exon:26279;Parent=Msa0388670-mRNA-1 |
| chr3_1 | five_prime_UTR | 93124106 | 93124270 | 93124106 | ID=Msa0388670-mRNA-1:five_prime_utr;Parent=Msa0388670-mRNA-1 |
| chr3_1 | five_prime_UTR | 93124485 | 93124501 | 93124485 | ID=Msa0388670-mRNA-1:five_prime_utr;Parent=Msa0388670-mRNA-1 |
| chr3_1 | CDS | 93124502 | 93124694 | 93124502 | ID=Msa0388670-mRNA-1:cds;Parent=Msa0388670-mRNA-1 |
| chr3_1 | CDS | 93126241 | 93126485 | 93126241 | ID=Msa0388670-mRNA-1:cds;Parent=Msa0388670-mRNA-1 |
| chr3_1 | CDS | 93126763 | 93127011 | 93126763 | ID=Msa0388670-mRNA-1:cds;Parent=Msa0388670-mRNA-1 |
| chr3_1 | CDS | 93127104 | 93127241 | 93127104 | ID=Msa0388670-mRNA-1:cds;Parent=Msa0388670-mRNA-1 |
| chr3_1 | CDS | 93127922 | 93127980 | 93127922 | ID=Msa0388670-mRNA-1:cds;Parent=Msa0388670-mRNA-1 |
| chr3_1 | CDS | 93128109 | 93128217 | 93128109 | ID=Msa0388670-mRNA-1:cds;Parent=Msa0388670-mRNA-1 |
| chr3_1 | three_prime_UTR | 93128218 | 93128602 | 93128218 | ID=Msa0388670-mRNA-1:three_prime_utr;Parent=Msa0388670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
