Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126550 | XP_013450277.1 | 98.485 | 330 | 3 | 1 | 1 | 330 | 1 | 328 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126550 | sp|Q8GW10|BAH1L_ARATH | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.28e-140 | 402 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126550 | A0A072UEU1 | 98.485 | 330 | 3 | 1 | 1 | 330 | 1 | 328 | 0.0 | 671 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0173390 | Msa1126550 | 0.804537 | 2.059881e-49 | -8.615850e-47 |
| Msa0178510 | Msa1126550 | 0.802778 | 4.774064e-49 | -8.615850e-47 |
| Msa0388670 | Msa1126550 | 0.920557 | 1.100901e-87 | -8.615850e-47 |
| Msa0397820 | Msa1126550 | 0.805045 | 1.613627e-49 | -8.615850e-47 |
| Msa0473330 | Msa1126550 | 0.806543 | 7.818114e-50 | -8.615850e-47 |
| Msa1081190 | Msa1126550 | 0.978273 | 1.759319e-145 | -8.615850e-47 |
| Msa1081200 | Msa1126550 | 0.951441 | 2.029200e-109 | -8.615850e-47 |
| Msa1126550 | Msa1357080 | 0.804750 | 1.859650e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126550 | MtrunA17_Chr7g0268131 | 98.485 | 330 | 3 | 1 | 1 | 330 | 1 | 328 | 0.0 | 671 |
| Msa1126550 | MtrunA17_Chr7g0269281 | 42.598 | 331 | 173 | 3 | 1 | 329 | 1 | 316 | 1.05e-83 | 255 |
| Msa1126550 | MtrunA17_Chr1g0195671 | 41.088 | 331 | 178 | 3 | 1 | 329 | 1 | 316 | 1.07e-83 | 255 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126550 | AT2G38920.5 | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.35e-141 | 402 |
| Msa1126550 | AT2G38920.1 | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.35e-141 | 402 |
| Msa1126550 | AT2G38920.6 | 60.000 | 335 | 126 | 4 | 1 | 328 | 1 | 334 | 4.35e-141 | 402 |
| Msa1126550 | AT2G38920.2 | 60.000 | 335 | 125 | 5 | 1 | 328 | 1 | 333 | 1.73e-139 | 398 |
| Msa1126550 | AT1G02860.1 | 42.105 | 342 | 178 | 8 | 1 | 329 | 1 | 335 | 1.60e-88 | 269 |
| Msa1126550 | AT2G38920.4 | 58.475 | 236 | 90 | 4 | 1 | 229 | 1 | 235 | 3.38e-87 | 262 |
| Msa1126550 | AT1G02860.2 | 42.105 | 342 | 176 | 9 | 1 | 329 | 1 | 333 | 2.93e-86 | 263 |
| Msa1126550 | AT2G38920.3 | 57.269 | 227 | 89 | 4 | 1 | 220 | 1 | 226 | 9.15e-81 | 245 |
| Msa1126550 | AT1G02860.3 | 38.430 | 242 | 129 | 8 | 1 | 229 | 1 | 235 | 4.27e-45 | 154 |
Find 92 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGATGTTATTTAGTAAAT+TGG | 0.125214 | 7_3:+78115144 | None:intergenic |
| TGAAGCAGTCAAGGGAATTT+TGG | 0.164505 | 7_3:-78115505 | Msa1126550:CDS |
| AATCCTATTAAGAGATATTA+TGG | 0.169364 | 7_3:-78115120 | Msa1126550:three_prime_UTR |
| ACTCTGGACTTGCAGCTTTA+AGG | 0.187562 | 7_3:+78116770 | None:intergenic |
| TTCTCAGGTGCAAAGATTAT+TGG | 0.189972 | 7_3:-78115562 | Msa1126550:intron |
| AGAATTGTTCAAATAAAATT+TGG | 0.193267 | 7_3:+78115207 | None:intergenic |
| CAATTAGAATTCTCCCTTCT+TGG | 0.214086 | 7_3:+78117560 | None:intergenic |
| CCTCATCGCAATTGCATTCA+TGG | 0.220874 | 7_3:+78117528 | None:intergenic |
| CTCACCTTGGCTGGTTGAAT+TGG | 0.242710 | 7_3:-78117135 | Msa1126550:CDS |
| CATCTTGTCCACTTGAATTC+AGG | 0.267892 | 7_3:+78117102 | None:intergenic |
| ATCAAACTCTACCTCAAATA+TGG | 0.279903 | 7_3:+78115308 | None:intergenic |
| TGCATCTGTGATGACTTTCC+AGG | 0.286509 | 7_3:-78116794 | Msa1126550:CDS |
| GTGCACATATTGAATATAAC+AGG | 0.342132 | 7_3:-78119400 | Msa1126550:CDS |
| AAGATGTTATTTAGTAAATT+GGG | 0.353840 | 7_3:+78115145 | None:intergenic |
| AATTAGAATTCTCCCTTCTT+GGG | 0.369748 | 7_3:+78117561 | None:intergenic |
| AGCAAATGCCAAATAGAAAA+TGG | 0.371078 | 7_3:-78115400 | Msa1126550:three_prime_UTR |
| TCACCTTGGCTGGTTGAATT+GGG | 0.383747 | 7_3:-78117134 | Msa1126550:CDS |
| GGAAATAGCGAAATGAAATT+CGG | 0.391506 | 7_3:-78119479 | Msa1126550:exon |
| TATTCAAGCTTAATAGAATC+TGG | 0.400747 | 7_3:+78117002 | None:intergenic |
| CATATAGGACACTTTGACTC+TGG | 0.405982 | 7_3:+78116754 | None:intergenic |
| GGTGGAGCGGGAGTGGCTAT+TGG | 0.406523 | 7_3:-78119432 | Msa1126550:CDS |
| GCGTTCATTTCATTCTTCTC+AGG | 0.408650 | 7_3:-78119719 | Msa1126550:intron |
| TTCATGTGATTTAAATGTAA+TGG | 0.410668 | 7_3:-78117048 | Msa1126550:CDS |
| TCAACTCGGAGAAGAACTTC+TGG | 0.410793 | 7_3:+78117719 | None:intergenic |
| AGAAAAGAAAATTACTGTAT+AGG | 0.411928 | 7_3:+78115282 | None:intergenic |
| AAGATTGACATTGACATAAC+TGG | 0.415523 | 7_3:+78119303 | None:intergenic |
| ACCTGCAGGTGGAGCGGGAG+TGG | 0.434211 | 7_3:-78119439 | Msa1126550:CDS |
| GTACGAAGTACAGTTTCGTT+AGG | 0.435687 | 7_3:+78119752 | None:intergenic |
| ATCCTATTAAGAGATATTAT+GGG | 0.437447 | 7_3:-78115119 | Msa1126550:three_prime_UTR |
| ATGAAATGAACGCAAAGTAC+AGG | 0.439123 | 7_3:+78119729 | None:intergenic |
| ATTCATACCTCTCTGCATAT+AGG | 0.445967 | 7_3:+78116739 | None:intergenic |
| AGGTACACAGTTCTGTGAAT+GGG | 0.450562 | 7_3:-78117205 | Msa1126550:CDS |
| AAAGAGACTAGCAATTTGCT+TGG | 0.452650 | 7_3:-78115177 | Msa1126550:three_prime_UTR |
| CTTCATCTTCACATTGCAAA+AGG | 0.453905 | 7_3:-78117643 | Msa1126550:CDS |
| TTCTAACATTCGGACTGCCT+TGG | 0.455919 | 7_3:+78115729 | None:intergenic |
| GACTTGCAGCTTTAAGGCCC+TGG | 0.457593 | 7_3:+78116776 | None:intergenic |
| AGAGTACCTGCAGGTGGAGC+GGG | 0.460266 | 7_3:-78119444 | Msa1126550:CDS |
| ATTGGAAAGAAAGGCTAGCT+AGG | 0.460901 | 7_3:-78115544 | Msa1126550:CDS |
| TGGCCACAACTCAATGCATA+TGG | 0.463628 | 7_3:+78116847 | None:intergenic |
| CAAGATGGTTGCGAGCTTGA+TGG | 0.464213 | 7_3:-78117086 | Msa1126550:CDS |
| AATGGTATATATATAAAGTA+AGG | 0.472673 | 7_3:+78119814 | None:intergenic |
| GCAAAGATTATTGGAAAGAA+AGG | 0.473719 | 7_3:-78115553 | Msa1126550:CDS |
| CAGCAATCCCACTGTATATG+TGG | 0.474837 | 7_3:+78115472 | None:intergenic |
| AATTCTCCCTTCTTGGGCAA+GGG | 0.477772 | 7_3:+78117567 | None:intergenic |
| GAATTCTCCCTTCTTGGGCA+AGG | 0.478477 | 7_3:+78117566 | None:intergenic |
| TTTGGAAGTTTAAATATGAA+AGG | 0.481803 | 7_3:+78115225 | None:intergenic |
| GAAAGGCTAGCTAGGGAAAG+AGG | 0.495583 | 7_3:-78115536 | Msa1126550:CDS |
| TCGATCTGCTTATGAAAAGA+AGG | 0.497598 | 7_3:-78115705 | Msa1126550:intron |
| CAGGTACACAGTTCTGTGAA+TGG | 0.499905 | 7_3:-78117206 | Msa1126550:CDS |
| GCAGATCGAGTTCTAACATT+CGG | 0.500588 | 7_3:+78115719 | None:intergenic |
| AAAGAAGCATCAGATATTGC+AGG | 0.508685 | 7_3:-78117694 | Msa1126550:CDS |
| CCTCAAATATGGATCGTTGA+GGG | 0.510627 | 7_3:+78115319 | None:intergenic |
| GCCACTCCCGCTCCACCTGC+AGG | 0.511617 | 7_3:+78119438 | None:intergenic |
| GTACAGTTTCGTTAGGGTCA+AGG | 0.514689 | 7_3:+78119759 | None:intergenic |
| CGAGAACTTAGGGAAGTTAG+TGG | 0.517609 | 7_3:-78115344 | Msa1126550:three_prime_UTR |
| GCATCTGTGATGACTTTCCA+GGG | 0.518610 | 7_3:-78116793 | Msa1126550:CDS |
| TACGAAGTACAGTTTCGTTA+GGG | 0.522874 | 7_3:+78119753 | None:intergenic |
| ATGGATATATTATAAATCAA+TGG | 0.524616 | 7_3:+78119796 | None:intergenic |
| CTGAATTCAAGTGGACAAGA+TGG | 0.526532 | 7_3:-78117101 | Msa1126550:CDS |
| TTAATCAATAATAACATCCA+AGG | 0.528629 | 7_3:+78115256 | None:intergenic |
| CAAGGTTGTCGAGAAGTGAA+TGG | 0.533729 | 7_3:+78119777 | None:intergenic |
| AGGGAAGCCCTTGCCCAAGA+AGG | 0.536511 | 7_3:-78117574 | Msa1126550:CDS |
| CCCTCAACGATCCATATTTG+AGG | 0.541541 | 7_3:-78115319 | Msa1126550:three_prime_UTR |
| GTGATCAATTGAAGCAGTCA+AGG | 0.541830 | 7_3:-78115514 | Msa1126550:CDS |
| AATCCATATGCATTGAGTTG+TGG | 0.545870 | 7_3:-78116850 | Msa1126550:CDS |
| TCTAAATTGTGCAATTTGCC+TGG | 0.547347 | 7_3:-78116976 | Msa1126550:intron |
| CACATGATTTGCAGAAGAAG+TGG | 0.551647 | 7_3:+78116827 | None:intergenic |
| GGGAAGCCCTTGCCCAAGAA+GGG | 0.569563 | 7_3:-78117573 | Msa1126550:CDS |
| TCCTATTAAGAGATATTATG+GGG | 0.572665 | 7_3:-78115118 | Msa1126550:three_prime_UTR |
| TTGGAAAGAAAGGCTAGCTA+GGG | 0.575920 | 7_3:-78115543 | Msa1126550:CDS |
| ATATACAGTGGGATTGCTGT+AGG | 0.578458 | 7_3:-78115468 | Msa1126550:exon |
| TGTCAATGTCAATCTTGCCC+AGG | 0.582570 | 7_3:-78119296 | Msa1126550:intron |
| TGATGCTTCTTTCATCAACT+CGG | 0.582662 | 7_3:+78117705 | None:intergenic |
| CATAACTGGTCTTTATCATG+AGG | 0.595621 | 7_3:+78119317 | None:intergenic |
| CACATTCAAAGAGTACCTGC+AGG | 0.598684 | 7_3:-78119453 | Msa1126550:CDS |
| GCACCCAATTCAACCAGCCA+AGG | 0.608792 | 7_3:+78117131 | None:intergenic |
| AACTGGTCTTTATCATGAGG+AGG | 0.610379 | 7_3:+78119320 | None:intergenic |
| AAGAGTACCTGCAGGTGGAG+CGG | 0.611509 | 7_3:-78119445 | Msa1126550:CDS |
| ACCTCAAATATGGATCGTTG+AGG | 0.613399 | 7_3:+78115318 | None:intergenic |
| TGAAATGAACGCAAAGTACA+GGG | 0.623520 | 7_3:+78119730 | None:intergenic |
| TGATCAATTGAAGCAGTCAA+GGG | 0.624831 | 7_3:-78115513 | Msa1126550:CDS |
| GGTACACAGTTCTGTGAATG+GGG | 0.627407 | 7_3:-78117204 | Msa1126550:CDS |
| TAATCAATAATAACATCCAA+GGG | 0.627731 | 7_3:+78115257 | None:intergenic |
| ATGCAATCCACATATACAGT+GGG | 0.629986 | 7_3:-78115479 | Msa1126550:CDS |
| GCAGAGTGGAGTTTATTCCA+AGG | 0.631763 | 7_3:-78115746 | Msa1126550:intron |
| CCATGAATGCAATTGCGATG+AGG | 0.653723 | 7_3:-78117528 | Msa1126550:CDS |
| ATTCAAAGAGTACCTGCAGG+TGG | 0.677747 | 7_3:-78119450 | Msa1126550:CDS |
| TGCGAGCTTGATGGAGTCCG+TGG | 0.679546 | 7_3:-78117077 | Msa1126550:CDS |
| AATCACATGAAAAGTGACCA+CGG | 0.698927 | 7_3:+78117060 | None:intergenic |
| CCTATTAAGAGATATTATGG+GGG | 0.704335 | 7_3:-78115117 | Msa1126550:three_prime_UTR |
| TATGCAATCCACATATACAG+TGG | 0.705145 | 7_3:-78115480 | Msa1126550:CDS |
| AAAGTGTCCTATATGCAGAG+AGG | 0.740633 | 7_3:-78116746 | Msa1126550:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTATGTTTAAAATCAA+CGG | - | chr7_3:78115685-78115704 | Msa1126550:intron | 10.0% |
| !!! | TAAACATAGTTTAAAATTAA+TGG | + | chr7_3:78117062-78117081 | None:intergenic | 10.0% |
| !! | TAAATAAGTATAAATGAAAA+TGG | + | chr7_3:78117466-78117485 | None:intergenic | 10.0% |
| !! | AATGGTATATATATAAAGTA+AGG | + | chr7_3:78115091-78115110 | None:intergenic | 15.0% |
| !! | ATGGATATATTATAAATCAA+TGG | + | chr7_3:78115109-78115128 | None:intergenic | 15.0% |
| !! | TGGTTAATTAATGTTTAATT+AGG | - | chr7_3:78115396-78115415 | Msa1126550:three_prime_UTR | 15.0% |
| !! | ATTAATGTTTAATTAGGATT+TGG | - | chr7_3:78115402-78115421 | Msa1126550:three_prime_UTR | 15.0% |
| !!! | ATTTTGCTTATAATTAGTAA+CGG | + | chr7_3:78115866-78115885 | None:intergenic | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | + | chr7_3:78115964-78115983 | None:intergenic | 15.0% |
| !! | ATATAAATTTGTGGTTAATA+AGG | - | chr7_3:78116109-78116128 | Msa1126550:intron | 15.0% |
| !! | AATTAATTATTCCATAACAA+AGG | + | chr7_3:78116351-78116370 | None:intergenic | 15.0% |
| !! | AATTAATTAATTGCTAGTAT+CGG | - | chr7_3:78116363-78116382 | Msa1126550:intron | 15.0% |
| !! | AATACAAAAGAACTTAAAAA+AGG | - | chr7_3:78116660-78116679 | Msa1126550:intron | 15.0% |
| !!! | AACATTTTAAAAAAGAATCA+TGG | + | chr7_3:78116775-78116794 | None:intergenic | 15.0% |
| !! | ACACATAATAATTTACTTAA+TGG | - | chr7_3:78116986-78117005 | Msa1126550:CDS | 15.0% |
| !!! | AATTTTTTTTTTTCATAGCA+TGG | + | chr7_3:78117970-78117989 | None:intergenic | 15.0% |
| !!! | AAATTTTGTGTCATTATAAA+TGG | + | chr7_3:78118206-78118225 | None:intergenic | 15.0% |
| !! | ATCATATAATGATATACTTA+TGG | + | chr7_3:78118956-78118975 | None:intergenic | 15.0% |
| !! | AGAATTGTTCAAATAAAATT+TGG | + | chr7_3:78119698-78119717 | None:intergenic | 15.0% |
| !!! | AATTTTATTTGAACAATTCT+CGG | - | chr7_3:78119698-78119717 | Msa1126550:intron | 15.0% |
| !!! | AAGATGTTATTTAGTAAATT+GGG | + | chr7_3:78119760-78119779 | None:intergenic | 15.0% |
| !!! | TAAGATGTTATTTAGTAAAT+TGG | + | chr7_3:78119761-78119780 | None:intergenic | 15.0% |
| !!! | AAAAGGTAAATATTCTGAAA+GGG | + | chr7_3:78115220-78115239 | None:intergenic | 20.0% |
| !! | AAAAAGGTAAATATTCTGAA+AGG | + | chr7_3:78115221-78115240 | None:intergenic | 20.0% |
| !! | TATTCAATTAATGATGTATG+TGG | + | chr7_3:78115939-78115958 | None:intergenic | 20.0% |
| !! | ACATAATTAACAACAATTTC+AGG | - | chr7_3:78116060-78116079 | Msa1126550:intron | 20.0% |
| !! | TATATTAGTGCAATAAGTAA+TGG | - | chr7_3:78116418-78116437 | Msa1126550:intron | 20.0% |
| !! | ATCTATTGTTTAATAACTCT+TGG | - | chr7_3:78116719-78116738 | Msa1126550:intron | 20.0% |
| !!! | AGTTTTTATTCATTAACATG+CGG | - | chr7_3:78116838-78116857 | Msa1126550:CDS | 20.0% |
| !! | TATGTTTAATCAAAATACTC+AGG | - | chr7_3:78117074-78117093 | Msa1126550:CDS | 20.0% |
| !! | TAAGTATAAATGAAAATGGA+GGG | + | chr7_3:78117462-78117481 | None:intergenic | 20.0% |
| !! | ATAAGTATAAATGAAAATGG+AGG | + | chr7_3:78117463-78117482 | None:intergenic | 20.0% |
| !!! | TATCTCATTCATTTTCATAT+GGG | + | chr7_3:78117595-78117614 | None:intergenic | 20.0% |
| !!! | TTATCTCATTCATTTTCATA+TGG | + | chr7_3:78117596-78117615 | None:intergenic | 20.0% |
| !! | TTCATGTGATTTAAATGTAA+TGG | - | chr7_3:78117854-78117873 | Msa1126550:intron | 20.0% |
| !!! | TAGTATTTTTGATAAATGCT+TGG | - | chr7_3:78118002-78118021 | Msa1126550:intron | 20.0% |
| !! | AAGGATATCTATTTACATTA+AGG | - | chr7_3:78118706-78118725 | Msa1126550:intron | 20.0% |
| !! | AAAAATAGATGTATTACAGA+AGG | + | chr7_3:78118849-78118868 | None:intergenic | 20.0% |
| !! | ATTTCGATCTCTATTAAATT+TGG | - | chr7_3:78118883-78118902 | Msa1126550:intron | 20.0% |
| !! | TTTCGATCTCTATTAAATTT+GGG | - | chr7_3:78118884-78118903 | Msa1126550:intron | 20.0% |
| !! | TATCATTATATGATTATCAC+AGG | - | chr7_3:78118962-78118981 | Msa1126550:intron | 20.0% |
| !! | ATTATGCTATAAATATCCAA+AGG | + | chr7_3:78119086-78119105 | None:intergenic | 20.0% |
| !! | GTCTTGATTATTAAAAACAA+AGG | + | chr7_3:78119118-78119137 | None:intergenic | 20.0% |
| !!! | ATGAAATGTTATTTTTGTAC+TGG | + | chr7_3:78119229-78119248 | None:intergenic | 20.0% |
| !!! | ATCAAAAACCATTTTCTATT+TGG | + | chr7_3:78119513-78119532 | None:intergenic | 20.0% |
| !! | AAAATAAAAACGAGAACTTA+GGG | - | chr7_3:78119548-78119567 | Msa1126550:intron | 20.0% |
| !! | AGAAAAGAAAATTACTGTAT+AGG | + | chr7_3:78119623-78119642 | None:intergenic | 20.0% |
| !! | TAATCAATAATAACATCCAA+GGG | + | chr7_3:78119648-78119667 | None:intergenic | 20.0% |
| !! | TTAATCAATAATAACATCCA+AGG | + | chr7_3:78119649-78119668 | None:intergenic | 20.0% |
| !! | TTTGGAAGTTTAAATATGAA+AGG | + | chr7_3:78119680-78119699 | None:intergenic | 20.0% |
| !! | AATCCTATTAAGAGATATTA+TGG | - | chr7_3:78119782-78119801 | Msa1126550:five_prime_UTR | 20.0% |
| !! | ATCCTATTAAGAGATATTAT+GGG | - | chr7_3:78119783-78119802 | Msa1126550:five_prime_UTR | 20.0% |
| !!! | ATTTTCGAACACTGATTTAT+TGG | - | chr7_3:78115376-78115395 | Msa1126550:three_prime_UTR | 25.0% |
| ! | TCAATATTGATATATTCCCT+GGG | + | chr7_3:78115996-78116015 | None:intergenic | 25.0% |
| ! | TTCAATATTGATATATTCCC+TGG | + | chr7_3:78115997-78116016 | None:intergenic | 25.0% |
| ! | GTTAAGCAGATATAAATTTG+TGG | - | chr7_3:78116100-78116119 | Msa1126550:intron | 25.0% |
| ! | AGTATAATGAGAATAAGACT+TGG | - | chr7_3:78116461-78116480 | Msa1126550:intron | 25.0% |
| ! | GTATAATGAGAATAAGACTT+GGG | - | chr7_3:78116462-78116481 | Msa1126550:intron | 25.0% |
| ! | TGCTTAAAATAAGCCTAAAA+TGG | - | chr7_3:78116493-78116512 | Msa1126550:intron | 25.0% |
| ! | TAAAATAAGCCTAAAATGGT+TGG | - | chr7_3:78116497-78116516 | Msa1126550:intron | 25.0% |
| !! | GTGTATGGAAAAAATCTTTT+TGG | - | chr7_3:78116944-78116963 | Msa1126550:intron | 25.0% |
| ! | AAATTAATGGCAATTCACAA+AGG | + | chr7_3:78117049-78117068 | None:intergenic | 25.0% |
| !!! | AGTCTTTTTAATTAACCAGA+AGG | - | chr7_3:78117107-78117126 | Msa1126550:CDS | 25.0% |
| ! | AAGTATAAATGAAAATGGAG+GGG | + | chr7_3:78117461-78117480 | None:intergenic | 25.0% |
| ! | ACGATCTATAATGAATACAA+GGG | - | chr7_3:78117549-78117568 | Msa1126550:CDS | 25.0% |
| ! | TGAAAATGAATGAGATAACA+AGG | - | chr7_3:78117598-78117617 | Msa1126550:CDS | 25.0% |
| !!! | ATCCTTTGTTATTTTACTAC+AGG | - | chr7_3:78117677-78117696 | Msa1126550:CDS | 25.0% |
| ! | TACCTGTAGTAAAATAACAA+AGG | + | chr7_3:78117682-78117701 | None:intergenic | 25.0% |
| ! | TATTCAAGCTTAATAGAATC+TGG | + | chr7_3:78117903-78117922 | None:intergenic | 25.0% |
| ! | AATTGACCCCATTTAAAAAT+CGG | + | chr7_3:78118380-78118399 | None:intergenic | 25.0% |
| ! | CTTCAATTGTGAAATCAAAT+AGG | - | chr7_3:78118545-78118564 | Msa1126550:intron | 25.0% |
| ! | TATGTAGATAATCTCTTAGA+AGG | - | chr7_3:78118687-78118706 | Msa1126550:intron | 25.0% |
| ! | TATCTATTTACATTAAGGAG+AGG | - | chr7_3:78118711-78118730 | Msa1126550:intron | 25.0% |
| ! | ATCTATTTACATTAAGGAGA+GGG | - | chr7_3:78118712-78118731 | Msa1126550:intron | 25.0% |
| ! | ACATCAATGAAATTCAAGAT+AGG | + | chr7_3:78118996-78119015 | None:intergenic | 25.0% |
| ! | TATCTTGAATTTCATTGATG+TGG | - | chr7_3:78118995-78119014 | Msa1126550:intron | 25.0% |
| ! | TAAATATCCAAAGGTTAACT+AGG | + | chr7_3:78119077-78119096 | None:intergenic | 25.0% |
| !!! | TAGGTTTTGTTGTTATGATT+TGG | - | chr7_3:78119453-78119472 | Msa1126550:CDS | 25.0% |
| !! | TTTTTGATCAAAGAGAGAAA+CGG | - | chr7_3:78119525-78119544 | Msa1126550:intron | 25.0% |
| ! | GAAAATAAAAACGAGAACTT+AGG | - | chr7_3:78119547-78119566 | Msa1126550:intron | 25.0% |
| ! | TCCTATTAAGAGATATTATG+GGG | - | chr7_3:78119784-78119803 | Msa1126550:five_prime_UTR | 25.0% |
| !!! | TATTTTAGTGACAAGATATG+TGG | - | chr7_3:78119816-78119835 | Msa1126550:five_prime_UTR | 25.0% |
| GGATGAAATGAATAGGAAAA+AGG | + | chr7_3:78115237-78115256 | None:intergenic | 30.0% | |
| GTAAAAATGAAAAAACGACG+AGG | + | chr7_3:78115261-78115280 | None:intergenic | 30.0% | |
| GGAAATAGCGAAATGAAATT+CGG | - | chr7_3:78115423-78115442 | Msa1126550:three_prime_UTR | 30.0% | |
| GTGCACATATTGAATATAAC+AGG | - | chr7_3:78115502-78115521 | Msa1126550:CDS | 30.0% | |
| AAGATTGACATTGACATAAC+TGG | + | chr7_3:78115602-78115621 | None:intergenic | 30.0% | |
| AATGTAAGCTTTCATTTGAG+TGG | - | chr7_3:78115729-78115748 | Msa1126550:CDS | 30.0% | |
| ! | TGCTTATAATTAGTAACGGA+GGG | + | chr7_3:78115862-78115881 | None:intergenic | 30.0% |
| TTGCTTATAATTAGTAACGG+AGG | + | chr7_3:78115863-78115882 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATAATA+TGG | + | chr7_3:78115927-78115946 | None:intergenic | 30.0% | |
| TTGCTTATAATTAGAAACCC+AGG | - | chr7_3:78115976-78115995 | Msa1126550:intron | 30.0% | |
| TGCTTATAATTAGAAACCCA+GGG | - | chr7_3:78115977-78115996 | Msa1126550:intron | 30.0% | |
| ! | AAATCTGTGTTGATCAAGTT+CGG | + | chr7_3:78116038-78116057 | None:intergenic | 30.0% |
| GGTTAATAAGGTTTCATAGA+TGG | - | chr7_3:78116121-78116140 | Msa1126550:intron | 30.0% | |
| ! | AGCTAATGAAGTGTTAGATT+TGG | + | chr7_3:78116166-78116185 | None:intergenic | 30.0% |
| ! | ATTATTATGTGCCCTTTTTC+CGG | - | chr7_3:78116271-78116290 | Msa1126550:intron | 30.0% |
| AGGTTCCTATTTAATGTTCA+TGG | - | chr7_3:78116306-78116325 | Msa1126550:intron | 30.0% | |
| GGTTCCTATTTAATGTTCAT+GGG | - | chr7_3:78116307-78116326 | Msa1126550:intron | 30.0% | |
| TGATGAAAATTCTACAACGA+CGG | + | chr7_3:78116542-78116561 | None:intergenic | 30.0% | |
| ATGAAAGTTTCCTATGTAGA+TGG | - | chr7_3:78116562-78116581 | Msa1126550:intron | 30.0% | |
| ! | CAAAACTCCTTTTAAACTTG+TGG | - | chr7_3:78116624-78116643 | Msa1126550:intron | 30.0% |
| TGAACATCCACAAGTTTAAA+AGG | + | chr7_3:78116634-78116653 | None:intergenic | 30.0% | |
| TTTAAACTTGTGGATGTTCA+TGG | - | chr7_3:78116634-78116653 | Msa1126550:intron | 30.0% | |
| CTTAAAAAAGGATTGAGATG+CGG | - | chr7_3:78116672-78116691 | Msa1126550:intron | 30.0% | |
| !! | TACTCTCAGCTTTAAGTAAT+AGG | + | chr7_3:78116819-78116838 | None:intergenic | 30.0% |
| TTATTCATTAACATGCGGTT+AGG | - | chr7_3:78116843-78116862 | Msa1126550:CDS | 30.0% | |
| !!! | CCAGTGTTTTAAAAATGACA+GGG | - | chr7_3:78117309-78117328 | Msa1126550:intron | 30.0% |
| AATTAGAATTCTCCCTTCTT+GGG | + | chr7_3:78117344-78117363 | None:intergenic | 30.0% | |
| AGTATAAATGAAAATGGAGG+GGG | + | chr7_3:78117460-78117479 | None:intergenic | 30.0% | |
| CACGATCTATAATGAATACA+AGG | - | chr7_3:78117548-78117567 | Msa1126550:CDS | 30.0% | |
| !!! | TTTTTTTTCATAGCATGGCA+TGG | + | chr7_3:78117965-78117984 | None:intergenic | 30.0% |
| ATACCATCCTTAAAACAGAA+AGG | + | chr7_3:78118285-78118304 | None:intergenic | 30.0% | |
| !!! | TACCTCACCGATTTTTAAAT+GGG | - | chr7_3:78118370-78118389 | Msa1126550:intron | 30.0% |
| TTGCTTAAAATTAGAGTAGC+AGG | + | chr7_3:78118474-78118493 | None:intergenic | 30.0% | |
| !! | AACAAAGAGTATCTCTAATG+AGG | + | chr7_3:78118604-78118623 | None:intergenic | 30.0% |
| CATTAGAGATACTCTTTGTT+AGG | - | chr7_3:78118604-78118623 | Msa1126550:intron | 30.0% | |
| TCTATTTACATTAAGGAGAG+GGG | - | chr7_3:78118713-78118732 | Msa1126550:intron | 30.0% | |
| AGGGAAATATCTATTCTCTA+AGG | - | chr7_3:78118793-78118812 | Msa1126550:intron | 30.0% | |
| TAATGTTGTGTCCATGATAA+AGG | + | chr7_3:78119044-78119063 | None:intergenic | 30.0% | |
| CATTTATCCTAGTTAACCTT+TGG | - | chr7_3:78119067-78119086 | Msa1126550:intron | 30.0% | |
| CACTCTGCATAAAAAAATGA+TGG | + | chr7_3:78119144-78119163 | None:intergenic | 30.0% | |
| !!! | CATCATTTTTTTATGCAGAG+TGG | - | chr7_3:78119142-78119161 | Msa1126550:intron | 30.0% |
| ! | AGCTACTTTCAATATTTCTC+AGG | - | chr7_3:78119325-78119344 | Msa1126550:CDS | 30.0% |
| GCAAAGATTATTGGAAAGAA+AGG | - | chr7_3:78119349-78119368 | Msa1126550:CDS | 30.0% | |
| CTCCTACAAAAATGTTTCAA+CGG | + | chr7_3:78119479-78119498 | None:intergenic | 30.0% | |
| AGCAAATGCCAAATAGAAAA+TGG | - | chr7_3:78119502-78119521 | Msa1126550:intron | 30.0% | |
| ATCAAACTCTACCTCAAATA+TGG | + | chr7_3:78119597-78119616 | None:intergenic | 30.0% | |
| ! | TAATTTTCTTTTCTCTCCCT+TGG | - | chr7_3:78119629-78119648 | Msa1126550:intron | 30.0% |
| CCTATTAAGAGATATTATGG+GGG | - | chr7_3:78119785-78119804 | Msa1126550:five_prime_UTR | 30.0% | |
| TACGAAGTACAGTTTCGTTA+GGG | + | chr7_3:78115152-78115171 | None:intergenic | 35.0% | |
| TGAAATGAACGCAAAGTACA+GGG | + | chr7_3:78115175-78115194 | None:intergenic | 35.0% | |
| ATGAAATGAACGCAAAGTAC+AGG | + | chr7_3:78115176-78115195 | None:intergenic | 35.0% | |
| AAAATGAAAAAACGACGAGG+AGG | + | chr7_3:78115258-78115277 | None:intergenic | 35.0% | |
| !! | CATAACTGGTCTTTATCATG+AGG | + | chr7_3:78115588-78115607 | None:intergenic | 35.0% |
| ACATAAAGCGTAAAACAGAC+AGG | + | chr7_3:78115637-78115656 | None:intergenic | 35.0% | |
| GGTTCTTACAGAAATGTCAT+TGG | - | chr7_3:78115764-78115783 | Msa1126550:intron | 35.0% | |
| TTCACACACGAGTAGTTTAA+TGG | - | chr7_3:78115831-78115850 | Msa1126550:intron | 35.0% | |
| ! | CTTATAATTAGTAACGGAGG+GGG | + | chr7_3:78115860-78115879 | None:intergenic | 35.0% |
| ! | GCTTATAATTAGTAACGGAG+GGG | + | chr7_3:78115861-78115880 | None:intergenic | 35.0% |
| !! | AAGTTCGGTTGATGGTTAAT+GGG | + | chr7_3:78116023-78116042 | None:intergenic | 35.0% |
| TCAGGTGTTTCAACTACATA+AGG | - | chr7_3:78116078-78116097 | Msa1126550:intron | 35.0% | |
| ATTAGCTAATCCCACTTAGT+GGG | - | chr7_3:78116179-78116198 | Msa1126550:intron | 35.0% | |
| GAGAATAAGACTTGGGAATT+AGG | - | chr7_3:78116469-78116488 | Msa1126550:intron | 35.0% | |
| AATAAGCCTAAAATGGTTGG+TGG | - | chr7_3:78116500-78116519 | Msa1126550:intron | 35.0% | |
| ATAAGCCTAAAATGGTTGGT+GGG | - | chr7_3:78116501-78116520 | Msa1126550:intron | 35.0% | |
| AAGAAGAGAACCATCTACAT+AGG | + | chr7_3:78116575-78116594 | None:intergenic | 35.0% | |
| TGATGCTTCTTTCATCAACT+CGG | + | chr7_3:78117200-78117219 | None:intergenic | 35.0% | |
| !! | AAAGAAGCATCAGATATTGC+AGG | - | chr7_3:78117208-78117227 | Msa1126550:intron | 35.0% |
| ! | CTTTTGCAATGTGAAGATGA+AGG | + | chr7_3:78117261-78117280 | None:intergenic | 35.0% |
| CTTCATCTTCACATTGCAAA+AGG | - | chr7_3:78117259-78117278 | Msa1126550:intron | 35.0% | |
| !!! | GCCAGTGTTTTAAAAATGAC+AGG | - | chr7_3:78117308-78117327 | Msa1126550:intron | 35.0% |
| !!! | CCCTGTCATTTTTAAAACAC+TGG | + | chr7_3:78117312-78117331 | None:intergenic | 35.0% |
| CAATTAGAATTCTCCCTTCT+TGG | + | chr7_3:78117345-78117364 | None:intergenic | 35.0% | |
| ! | TTGAACTTTTACACTCACCT+TGG | - | chr7_3:78117754-78117773 | Msa1126550:intron | 35.0% |
| ! | GCTTTTTACCTGAATTCAAG+TGG | - | chr7_3:78117792-78117811 | Msa1126550:intron | 35.0% |
| AATCACATGAAAAGTGACCA+CGG | + | chr7_3:78117845-78117864 | None:intergenic | 35.0% | |
| TCTAAATTGTGCAATTTGCC+TGG | - | chr7_3:78117926-78117945 | Msa1126550:intron | 35.0% | |
| ACAAAATCCTACCATATCAC+AGG | + | chr7_3:78118028-78118047 | None:intergenic | 35.0% | |
| ! | AATCCATATGCATTGAGTTG+TGG | - | chr7_3:78118052-78118071 | Msa1126550:intron | 35.0% |
| ATTCATACCTCTCTGCATAT+AGG | + | chr7_3:78118166-78118185 | None:intergenic | 35.0% | |
| TCACTCTAGATATCAATCAC+CGG | - | chr7_3:78118319-78118338 | Msa1126550:intron | 35.0% | |
| !!! | GTACCTCACCGATTTTTAAA+TGG | - | chr7_3:78118369-78118388 | Msa1126550:intron | 35.0% |
| !!! | ACCTCACCGATTTTTAAATG+GGG | - | chr7_3:78118371-78118390 | Msa1126550:intron | 35.0% |
| TTAAACTTCTTCAAACCGAC+TGG | + | chr7_3:78118407-78118426 | None:intergenic | 35.0% | |
| AAGCAACTCTTGCTTGTATA+AGG | - | chr7_3:78118488-78118507 | Msa1126550:intron | 35.0% | |
| ACAATTGAAGTTTGTGCATG+AGG | + | chr7_3:78118535-78118554 | None:intergenic | 35.0% | |
| GCATTCAATAACAGTTTGAC+TGG | - | chr7_3:78118749-78118768 | Msa1126550:intron | 35.0% | |
| AACAGTTTGACTGGAATCTT+CGG | - | chr7_3:78118758-78118777 | Msa1126550:intron | 35.0% | |
| TTTCATTGATGTGGCTGTTA+TGG | - | chr7_3:78119004-78119023 | Msa1126550:intron | 35.0% | |
| TCGATCTGCTTATGAAAAGA+AGG | - | chr7_3:78119197-78119216 | Msa1126550:intron | 35.0% | |
| ATGTGCATACATGAATGCTA+TGG | + | chr7_3:78119293-78119312 | None:intergenic | 35.0% | |
| TTCTCAGGTGCAAAGATTAT+TGG | - | chr7_3:78119340-78119359 | Msa1126550:CDS | 35.0% | |
| TGATCAATTGAAGCAGTCAA+GGG | - | chr7_3:78119389-78119408 | Msa1126550:CDS | 35.0% | |
| TATGCAATCCACATATACAG+TGG | - | chr7_3:78119422-78119441 | Msa1126550:CDS | 35.0% | |
| ATGCAATCCACATATACAGT+GGG | - | chr7_3:78119423-78119442 | Msa1126550:CDS | 35.0% | |
| ! | AAAGAGACTAGCAATTTGCT+TGG | - | chr7_3:78119725-78119744 | Msa1126550:five_prime_UTR | 35.0% |
| CCCCCATAATATCTCTTAAT+AGG | + | chr7_3:78119788-78119807 | None:intergenic | 35.0% | |
| GTACGAAGTACAGTTTCGTT+AGG | + | chr7_3:78115153-78115172 | None:intergenic | 40.0% | |
| GCGTTCATTTCATTCTTCTC+AGG | - | chr7_3:78115183-78115202 | Msa1126550:three_prime_UTR | 40.0% | |
| ACGAGGAGGATGAAATGAAT+AGG | + | chr7_3:78115244-78115263 | None:intergenic | 40.0% | |
| GATCTCATACATGTGATGTG+AGG | - | chr7_3:78115321-78115340 | Msa1126550:three_prime_UTR | 40.0% | |
| !! | AACTGGTCTTTATCATGAGG+AGG | + | chr7_3:78115585-78115604 | None:intergenic | 40.0% |
| AAAACAGACAGGACATACCT+GGG | + | chr7_3:78115626-78115645 | None:intergenic | 40.0% | |
| TAAAACAGACAGGACATACC+TGG | + | chr7_3:78115627-78115646 | None:intergenic | 40.0% | |
| !! | CAAGTTCGGTTGATGGTTAA+TGG | + | chr7_3:78116024-78116043 | None:intergenic | 40.0% |
| TGTTGATCAAGTTCGGTTGA+TGG | + | chr7_3:78116031-78116050 | None:intergenic | 40.0% | |
| CATTAGCTAATCCCACTTAG+TGG | - | chr7_3:78116178-78116197 | Msa1126550:intron | 40.0% | |
| TAATCCCACTTAGTGGGATA+AGG | - | chr7_3:78116185-78116204 | Msa1126550:intron | 40.0% | |
| CGGTCCCATGAACATTAAAT+AGG | + | chr7_3:78116314-78116333 | None:intergenic | 40.0% | |
| ! | TAAGCCTAAAATGGTTGGTG+GGG | - | chr7_3:78116502-78116521 | Msa1126550:intron | 40.0% |
| ATAGGCACTATGTGTCAGTT+TGG | + | chr7_3:78116801-78116820 | None:intergenic | 40.0% | |
| ! | GCTTAAGGTAGTCTTGCTTA+AGG | + | chr7_3:78116892-78116911 | None:intergenic | 40.0% |
| AAGACTACCTTAAGCAAGAC+TGG | - | chr7_3:78116897-78116916 | Msa1126550:intron | 40.0% | |
| CGATCTTTGACTCTTGTGTA+TGG | - | chr7_3:78116929-78116948 | Msa1126550:intron | 40.0% | |
| ! | ACTTAATGGTTTGCCGTCTT+CGG | - | chr7_3:78117000-78117019 | Msa1126550:CDS | 40.0% |
| TTGCAAAGAATGTCCGAAGA+CGG | + | chr7_3:78117016-78117035 | None:intergenic | 40.0% | |
| ACTGCATAAAGTGAACCTTC+TGG | + | chr7_3:78117125-78117144 | None:intergenic | 40.0% | |
| AGGTACACAGTTCTGTGAAT+GGG | - | chr7_3:78117697-78117716 | Msa1126550:CDS | 40.0% | |
| CATCTTGTCCACTTGAATTC+AGG | + | chr7_3:78117803-78117822 | None:intergenic | 40.0% | |
| CTGAATTCAAGTGGACAAGA+TGG | - | chr7_3:78117801-78117820 | Msa1126550:intron | 40.0% | |
| CATGGAAATAGGATCTTACC+AGG | + | chr7_3:78117947-78117966 | None:intergenic | 40.0% | |
| TCATAGCATGGCATGGAAAT+AGG | + | chr7_3:78117958-78117977 | None:intergenic | 40.0% | |
| TAAATGCTTGGCCTGTGATA+TGG | - | chr7_3:78118014-78118033 | Msa1126550:intron | 40.0% | |
| ! | CACATGATTTGCAGAAGAAG+TGG | + | chr7_3:78118078-78118097 | None:intergenic | 40.0% |
| CATATAGGACACTTTGACTC+TGG | + | chr7_3:78118151-78118170 | None:intergenic | 40.0% | |
| ! | AAAGTGTCCTATATGCAGAG+AGG | - | chr7_3:78118156-78118175 | Msa1126550:intron | 40.0% |
| TACTAGTTCAGTTGTGCATC+TGG | - | chr7_3:78118225-78118244 | Msa1126550:intron | 40.0% | |
| CATCTGGACAGAAATGTGTT+TGG | - | chr7_3:78118241-78118260 | Msa1126550:intron | 40.0% | |
| !! | GACAGAAATGTGTTTGGTGT+AGG | - | chr7_3:78118247-78118266 | Msa1126550:intron | 40.0% |
| ! | TGGTCAGCCTTTCTGTTTTA+AGG | - | chr7_3:78118275-78118294 | Msa1126550:intron | 40.0% |
| !!! | CAGCCTTTCTGTTTTAAGGA+TGG | - | chr7_3:78118279-78118298 | Msa1126550:intron | 40.0% |
| ! | GGTGATTGATATCTAGAGTG+AGG | + | chr7_3:78118320-78118339 | None:intergenic | 40.0% |
| ACCCCATTTAAAAATCGGTG+AGG | + | chr7_3:78118375-78118394 | None:intergenic | 40.0% | |
| !! | AGAAGGAGAGAGTTGATAGT+TGG | + | chr7_3:78118439-78118458 | None:intergenic | 40.0% |
| !! | CTCTAATGAGGTGTCGTATT+GGG | + | chr7_3:78118592-78118611 | None:intergenic | 40.0% |
| !! | TCTCTAATGAGGTGTCGTAT+TGG | + | chr7_3:78118593-78118612 | None:intergenic | 40.0% |
| GATACTCTTTGTTAGGCATC+AGG | - | chr7_3:78118611-78118630 | Msa1126550:intron | 40.0% | |
| CTTTGTTAGGCATCAGGTTT+AGG | - | chr7_3:78118617-78118636 | Msa1126550:intron | 40.0% | |
| TTAGGCCTTAGACCAACAAA+TGG | - | chr7_3:78118635-78118654 | Msa1126550:intron | 40.0% | |
| TAGGCCTTAGACCAACAAAT+GGG | - | chr7_3:78118636-78118655 | Msa1126550:intron | 40.0% | |
| ! | TATGATTATCACAGGCGTTG+TGG | - | chr7_3:78118970-78118989 | Msa1126550:intron | 40.0% |
| GATGTGGCTGTTATGGAATT+CGG | - | chr7_3:78119011-78119030 | Msa1126550:intron | 40.0% | |
| ATGTGGCTGTTATGGAATTC+GGG | - | chr7_3:78119012-78119031 | Msa1126550:intron | 40.0% | |
| TCGGGTAATGTCCTTTATCA+TGG | - | chr7_3:78119030-78119049 | Msa1126550:intron | 40.0% | |
| ! | GCAGATCGAGTTCTAACATT+CGG | + | chr7_3:78119186-78119205 | None:intergenic | 40.0% |
| ! | ATTGGAAAGAAAGGCTAGCT+AGG | - | chr7_3:78119358-78119377 | Msa1126550:CDS | 40.0% |
| ! | TTGGAAAGAAAGGCTAGCTA+GGG | - | chr7_3:78119359-78119378 | Msa1126550:CDS | 40.0% |
| GTGATCAATTGAAGCAGTCA+AGG | - | chr7_3:78119388-78119407 | Msa1126550:CDS | 40.0% | |
| ! | TGAAGCAGTCAAGGGAATTT+TGG | - | chr7_3:78119397-78119416 | Msa1126550:CDS | 40.0% |
| ATATACAGTGGGATTGCTGT+AGG | - | chr7_3:78119434-78119453 | Msa1126550:CDS | 40.0% | |
| ! | GGCCGTTGAAACATTTTTGT+AGG | - | chr7_3:78119474-78119493 | Msa1126550:exon | 40.0% |
| CCTCAAATATGGATCGTTGA+GGG | + | chr7_3:78119586-78119605 | None:intergenic | 40.0% | |
| ACCTCAAATATGGATCGTTG+AGG | + | chr7_3:78119587-78119606 | None:intergenic | 40.0% | |
| CAAGGTTGTCGAGAAGTGAA+TGG | + | chr7_3:78115128-78115147 | None:intergenic | 45.0% | |
| GTACAGTTTCGTTAGGGTCA+AGG | + | chr7_3:78115146-78115165 | None:intergenic | 45.0% | |
| !! | CACATTCAAAGAGTACCTGC+AGG | - | chr7_3:78115449-78115468 | Msa1126550:three_prime_UTR | 45.0% |
| !! | ATTCAAAGAGTACCTGCAGG+TGG | - | chr7_3:78115452-78115471 | Msa1126550:exon | 45.0% |
| TGTCAATGTCAATCTTGCCC+AGG | - | chr7_3:78115606-78115625 | Msa1126550:intron | 45.0% | |
| TTTGAGTGGACGATTCAACG+TGG | - | chr7_3:78115743-78115762 | Msa1126550:CDS | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr7_3:78116192-78116211 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr7_3:78116193-78116212 | None:intergenic | 45.0% |
| ! | TTATGTGCCCTTTTTCCGGA+TGG | - | chr7_3:78116275-78116294 | Msa1126550:intron | 45.0% |
| CACCTTACCATCCGGAAAAA+GGG | + | chr7_3:78116285-78116304 | None:intergenic | 45.0% | |
| TAATGTTCATGGGACCGAAC+CGG | - | chr7_3:78116317-78116336 | Msa1126550:intron | 45.0% | |
| CATAACAAAGGAACCAGTCC+CGG | + | chr7_3:78116339-78116358 | None:intergenic | 45.0% | |
| CCTCTAACCAGTCTTGCTTA+AGG | + | chr7_3:78116907-78116926 | None:intergenic | 45.0% | |
| ! | CCTTAAGCAAGACTGGTTAG+AGG | - | chr7_3:78116904-78116923 | Msa1126550:intron | 45.0% |
| ATGGCAATTCACAAAGGCTC+TGG | + | chr7_3:78117043-78117062 | None:intergenic | 45.0% | |
| TCAACTCGGAGAAGAACTTC+TGG | + | chr7_3:78117186-78117205 | None:intergenic | 45.0% | |
| AATTCTCCCTTCTTGGGCAA+GGG | + | chr7_3:78117338-78117357 | None:intergenic | 45.0% | |
| CCTCATCGCAATTGCATTCA+TGG | + | chr7_3:78117377-78117396 | None:intergenic | 45.0% | |
| CCATGAATGCAATTGCGATG+AGG | - | chr7_3:78117374-78117393 | Msa1126550:intron | 45.0% | |
| CAGGTACACAGTTCTGTGAA+TGG | - | chr7_3:78117696-78117715 | Msa1126550:CDS | 45.0% | |
| GGTACACAGTTCTGTGAATG+GGG | - | chr7_3:78117698-78117717 | Msa1126550:CDS | 45.0% | |
| ! | ACTTTTACACTCACCTTGGC+TGG | - | chr7_3:78117758-78117777 | Msa1126550:intron | 45.0% |
| ! | TCACCTTGGCTGGTTGAATT+GGG | - | chr7_3:78117768-78117787 | Msa1126550:intron | 45.0% |
| TGGCCACAACTCAATGCATA+TGG | + | chr7_3:78118058-78118077 | None:intergenic | 45.0% | |
| TGCATCTGTGATGACTTTCC+AGG | - | chr7_3:78118108-78118127 | Msa1126550:intron | 45.0% | |
| GCATCTGTGATGACTTTCCA+GGG | - | chr7_3:78118109-78118128 | Msa1126550:intron | 45.0% | |
| ACTCTGGACTTGCAGCTTTA+AGG | + | chr7_3:78118135-78118154 | None:intergenic | 45.0% | |
| !! | GAAATGTGTTTGGTGTAGGC+TGG | - | chr7_3:78118251-78118270 | Msa1126550:intron | 45.0% |
| ! | ATATCTAGAGTGAGGCAGAC+GGG | + | chr7_3:78118312-78118331 | None:intergenic | 45.0% |
| ! | GATATCTAGAGTGAGGCAGA+CGG | + | chr7_3:78118313-78118332 | None:intergenic | 45.0% |
| AGAGTAGCAGGCTTAAGAGA+GGG | + | chr7_3:78118462-78118481 | None:intergenic | 45.0% | |
| TAGAGTAGCAGGCTTAAGAG+AGG | + | chr7_3:78118463-78118482 | None:intergenic | 45.0% | |
| ! | TTGGCCCATTTGTTGGTCTA+AGG | + | chr7_3:78118643-78118662 | None:intergenic | 45.0% |
| AGACCAACAAATGGGCCAAA+TGG | - | chr7_3:78118644-78118663 | Msa1126550:intron | 45.0% | |
| TCTCCATTTGGCCCATTTGT+TGG | + | chr7_3:78118650-78118669 | None:intergenic | 45.0% | |
| AAATGGGCCAAATGGAGAGT+TGG | - | chr7_3:78118652-78118671 | Msa1126550:intron | 45.0% | |
| TCTGTAGCCAACTCTCCATT+TGG | + | chr7_3:78118662-78118681 | None:intergenic | 45.0% | |
| ! | CTTTTGCTCTGCTGATACAG+TGG | - | chr7_3:78118818-78118837 | Msa1126550:intron | 45.0% |
| GCACATTAACTACGAGCGAT+AGG | + | chr7_3:78118912-78118931 | None:intergenic | 45.0% | |
| GCAGAGTGGAGTTTATTCCA+AGG | - | chr7_3:78119156-78119175 | Msa1126550:intron | 45.0% | |
| TTCTAACATTCGGACTGCCT+TGG | + | chr7_3:78119176-78119195 | None:intergenic | 45.0% | |
| CAGCAATCCCACTGTATATG+TGG | + | chr7_3:78119433-78119452 | None:intergenic | 45.0% | |
| CGAGAACTTAGGGAAGTTAG+TGG | - | chr7_3:78119558-78119577 | Msa1126550:intron | 45.0% | |
| CCCTCAACGATCCATATTTG+AGG | - | chr7_3:78119583-78119602 | Msa1126550:intron | 45.0% | |
| ! | CGTGTGTGAACTGTGTTGAC+AGG | + | chr7_3:78115821-78115840 | None:intergenic | 50.0% |
| ! | TGCCCTTTTTCCGGATGGTA+AGG | - | chr7_3:78116280-78116299 | Msa1126550:intron | 50.0% |
| GCACCTTACCATCCGGAAAA+AGG | + | chr7_3:78116286-78116305 | None:intergenic | 50.0% | |
| ! | TTTTCCGGATGGTAAGGTGC+AGG | - | chr7_3:78116286-78116305 | Msa1126550:intron | 50.0% |
| AATGTTCATGGGACCGAACC+GGG | - | chr7_3:78116318-78116337 | Msa1126550:intron | 50.0% | |
| !! | CGGGACTGGTTCCTTTGTTA+TGG | - | chr7_3:78116337-78116356 | Msa1126550:intron | 50.0% |
| ! | CTCACCCCACCAACCATTTT+AGG | + | chr7_3:78116509-78116528 | None:intergenic | 50.0% |
| TTCTGGTCGCATACTGCAAG+TGG | + | chr7_3:78117169-78117188 | None:intergenic | 50.0% | |
| GAATTCTCCCTTCTTGGGCA+AGG | + | chr7_3:78117339-78117358 | None:intergenic | 50.0% | |
| ! | CTCACCTTGGCTGGTTGAAT+TGG | - | chr7_3:78117767-78117786 | Msa1126550:intron | 50.0% |
| CAAGATGGTTGCGAGCTTGA+TGG | - | chr7_3:78117816-78117835 | Msa1126550:intron | 50.0% | |
| TGCTTGGCCTGTGATATGGT+AGG | - | chr7_3:78118018-78118037 | Msa1126550:intron | 50.0% | |
| !! | TGTGTTTGGTGTAGGCTGGT+TGG | - | chr7_3:78118255-78118274 | Msa1126550:intron | 50.0% |
| ! | TATCTAGAGTGAGGCAGACG+GGG | + | chr7_3:78118311-78118330 | None:intergenic | 50.0% |
| TCCCCAACCACGACTACAAT+CGG | - | chr7_3:78118345-78118364 | Msa1126550:intron | 50.0% | |
| TCCGATTGTAGTCGTGGTTG+GGG | + | chr7_3:78118349-78118368 | None:intergenic | 50.0% | |
| CTCCGATTGTAGTCGTGGTT+GGG | + | chr7_3:78118350-78118369 | None:intergenic | 50.0% | |
| ACTCCGATTGTAGTCGTGGT+TGG | + | chr7_3:78118351-78118370 | None:intergenic | 50.0% | |
| AGGTACTCCGATTGTAGTCG+TGG | + | chr7_3:78118355-78118374 | None:intergenic | 50.0% | |
| TGGGGTCAATTCTTGCCAGT+CGG | - | chr7_3:78118389-78118408 | Msa1126550:intron | 50.0% | |
| GCATGAGGCTGACACTTGTA+AGG | + | chr7_3:78118520-78118539 | None:intergenic | 50.0% | |
| !! | ATCTTCGGTGTTGAGCAGTG+AGG | - | chr7_3:78118773-78118792 | Msa1126550:intron | 50.0% |
| !! | TCTTCGGTGTTGAGCAGTGA+GGG | - | chr7_3:78118774-78118793 | Msa1126550:intron | 50.0% |
| ! | GAAAGGCTAGCTAGGGAAAG+AGG | - | chr7_3:78119366-78119385 | Msa1126550:CDS | 50.0% |
| !! | AAGAGTACCTGCAGGTGGAG+CGG | - | chr7_3:78115457-78115476 | Msa1126550:exon | 55.0% |
| GGAACCTGCACCTTACCATC+CGG | + | chr7_3:78116293-78116312 | None:intergenic | 55.0% | |
| CAAAGGAACCAGTCCCGGTT+CGG | + | chr7_3:78116334-78116353 | None:intergenic | 55.0% | |
| TAACATGCGGTTAGGCCGAG+TGG | - | chr7_3:78116851-78116870 | Msa1126550:CDS | 55.0% | |
| !! | AGGCCGAGTGGTAATGGACT+CGG | - | chr7_3:78116863-78116882 | Msa1126550:CDS | 55.0% |
| TGCCCGAGTCCATTACCACT+CGG | + | chr7_3:78116869-78116888 | None:intergenic | 55.0% | |
| GCACCCAATTCAACCAGCCA+AGG | + | chr7_3:78117774-78117793 | None:intergenic | 55.0% | |
| !! | GACTTGCAGCTTTAAGGCCC+TGG | + | chr7_3:78118129-78118148 | None:intergenic | 55.0% |
| TAGTCGTGGTTGGGGATCTC+CGG | + | chr7_3:78118341-78118360 | None:intergenic | 55.0% | |
| GCAGGCTTAAGAGAGGGAGA+AGG | + | chr7_3:78118456-78118475 | None:intergenic | 55.0% | |
| AGGAGAGGGGTAGCAAGTTG+AGG | - | chr7_3:78118726-78118745 | Msa1126550:intron | 55.0% | |
| ! | GGAGAGGGGTAGCAAGTTGA+GGG | - | chr7_3:78118727-78118746 | Msa1126550:intron | 55.0% |
| ! | AGAGTACCTGCAGGTGGAGC+GGG | - | chr7_3:78115458-78115477 | Msa1126550:exon | 60.0% |
| GCGGTTAGGCCGAGTGGTAA+TGG | - | chr7_3:78116857-78116876 | Msa1126550:CDS | 60.0% | |
| !! | GGCCGAGTGGTAATGGACTC+GGG | - | chr7_3:78116864-78116883 | Msa1126550:CDS | 60.0% |
| AGGGAAGCCCTTGCCCAAGA+AGG | - | chr7_3:78117328-78117347 | Msa1126550:intron | 60.0% | |
| GGGAAGCCCTTGCCCAAGAA+GGG | - | chr7_3:78117329-78117348 | Msa1126550:intron | 60.0% | |
| TGCGAGCTTGATGGAGTCCG+TGG | - | chr7_3:78117825-78117844 | Msa1126550:intron | 60.0% | |
| GGTGGAGCGGGAGTGGCTAT+TGG | - | chr7_3:78115470-78115489 | Msa1126550:CDS | 65.0% | |
| TCATGGGACCGAACCGGGAC+TGG | - | chr7_3:78116323-78116342 | Msa1126550:intron | 65.0% | |
| ACCTGCAGGTGGAGCGGGAG+TGG | - | chr7_3:78115463-78115482 | Msa1126550:exon | 70.0% | |
| GCCACTCCCGCTCCACCTGC+AGG | + | chr7_3:78115467-78115486 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 78115084 | 78119840 | 78115084 | ID=Msa1126550;Name=Msa1126550 |
| chr7_3 | mRNA | 78115084 | 78119840 | 78115084 | ID=Msa1126550-mRNA-1;Parent=Msa1126550;Name=Msa1126550-mRNA-1;_AED=0.14;_eAED=0.14;_QI=138|1|1|1|0.83|0.71|7|385|330 |
| chr7_3 | exon | 78115084 | 78115577 | 78115084 | ID=Msa1126550-mRNA-1:exon:21737;Parent=Msa1126550-mRNA-1 |
| chr7_3 | exon | 78115706 | 78115764 | 78115706 | ID=Msa1126550-mRNA-1:exon:21736;Parent=Msa1126550-mRNA-1 |
| chr7_3 | exon | 78116747 | 78116884 | 78116747 | ID=Msa1126550-mRNA-1:exon:21735;Parent=Msa1126550-mRNA-1 |
| chr7_3 | exon | 78116977 | 78117225 | 78116977 | ID=Msa1126550-mRNA-1:exon:21734;Parent=Msa1126550-mRNA-1 |
| chr7_3 | exon | 78117504 | 78117748 | 78117504 | ID=Msa1126550-mRNA-1:exon:21733;Parent=Msa1126550-mRNA-1 |
| chr7_3 | exon | 78119297 | 78119506 | 78119297 | ID=Msa1126550-mRNA-1:exon:21732;Parent=Msa1126550-mRNA-1 |
| chr7_3 | exon | 78119720 | 78119840 | 78119720 | ID=Msa1126550-mRNA-1:exon:21731;Parent=Msa1126550-mRNA-1 |
| chr7_3 | five_prime_UTR | 78119720 | 78119840 | 78119720 | ID=Msa1126550-mRNA-1:five_prime_utr;Parent=Msa1126550-mRNA-1 |
| chr7_3 | five_prime_UTR | 78119490 | 78119506 | 78119490 | ID=Msa1126550-mRNA-1:five_prime_utr;Parent=Msa1126550-mRNA-1 |
| chr7_3 | CDS | 78119297 | 78119489 | 78119297 | ID=Msa1126550-mRNA-1:cds;Parent=Msa1126550-mRNA-1 |
| chr7_3 | CDS | 78117504 | 78117748 | 78117504 | ID=Msa1126550-mRNA-1:cds;Parent=Msa1126550-mRNA-1 |
| chr7_3 | CDS | 78116977 | 78117225 | 78116977 | ID=Msa1126550-mRNA-1:cds;Parent=Msa1126550-mRNA-1 |
| chr7_3 | CDS | 78116747 | 78116884 | 78116747 | ID=Msa1126550-mRNA-1:cds;Parent=Msa1126550-mRNA-1 |
| chr7_3 | CDS | 78115706 | 78115764 | 78115706 | ID=Msa1126550-mRNA-1:cds;Parent=Msa1126550-mRNA-1 |
| chr7_3 | CDS | 78115469 | 78115577 | 78115469 | ID=Msa1126550-mRNA-1:cds;Parent=Msa1126550-mRNA-1 |
| chr7_3 | three_prime_UTR | 78115084 | 78115468 | 78115084 | ID=Msa1126550-mRNA-1:three_prime_utr;Parent=Msa1126550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
