Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389840 | KEH18552.1 | 99.528 | 212 | 1 | 0 | 1 | 212 | 46 | 257 | 2.46e-156 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389840 | sp|Q93V56|IPYR1_ARATH | 88.679 | 212 | 24 | 0 | 1 | 212 | 1 | 212 | 1.42e-140 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389840 | A0A072TMB0 | 99.528 | 212 | 1 | 0 | 1 | 212 | 46 | 257 | 1.17e-156 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0389840 | Msa1175600 | 0.863288 | 2.769562e-64 | -8.615850e-47 |
| Msa0389840 | Msa1235780 | 0.827372 | 1.622354e-54 | -8.615850e-47 |
| Msa0389840 | Msa1236030 | 0.905440 | 4.284102e-80 | -8.615850e-47 |
| Msa0389840 | Msa1262320 | 0.811811 | 5.807336e-51 | -8.615850e-47 |
| Msa0389840 | Msa1418190 | 0.805491 | 1.301303e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389840 | MtrunA17_Chr8g0345781 | 99.528 | 212 | 1 | 0 | 1 | 212 | 6 | 217 | 7.08e-160 | 440 |
| Msa0389840 | MtrunA17_Chr1g0182331 | 85.279 | 197 | 29 | 0 | 16 | 212 | 20 | 216 | 4.20e-128 | 360 |
| Msa0389840 | MtrunA17_Chr5g0404551 | 77.725 | 211 | 47 | 0 | 2 | 212 | 3 | 213 | 3.07e-127 | 357 |
| Msa0389840 | MtrunA17_Chr8g0372981 | 80.788 | 203 | 38 | 1 | 11 | 212 | 24 | 226 | 5.16e-123 | 347 |
| Msa0389840 | MtrunA17_Chr7g0276441 | 93.939 | 165 | 10 | 0 | 48 | 212 | 29 | 193 | 3.92e-115 | 326 |
| Msa0389840 | MtrunA17_Chr1g0200691 | 66.949 | 236 | 38 | 2 | 4 | 199 | 50 | 285 | 4.22e-110 | 317 |
| Msa0389840 | MtrunA17_Chr2g0280151 | 29.412 | 204 | 113 | 7 | 35 | 210 | 82 | 282 | 1.28e-16 | 76.6 |
| Msa0389840 | MtrunA17_Chr1g0210921 | 45.882 | 85 | 41 | 4 | 131 | 210 | 12 | 96 | 3.65e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389840 | AT1G01050.1 | 88.679 | 212 | 24 | 0 | 1 | 212 | 1 | 212 | 1.45e-141 | 394 |
| Msa0389840 | AT1G01050.2 | 88.679 | 212 | 24 | 0 | 1 | 212 | 1 | 212 | 1.45e-141 | 394 |
| Msa0389840 | AT2G46860.1 | 87.037 | 216 | 24 | 1 | 1 | 212 | 1 | 216 | 2.06e-139 | 389 |
| Msa0389840 | AT4G01480.1 | 88.945 | 199 | 22 | 0 | 14 | 212 | 18 | 216 | 3.24e-134 | 375 |
| Msa0389840 | AT4G01480.2 | 88.945 | 199 | 22 | 0 | 14 | 212 | 18 | 216 | 3.24e-134 | 375 |
| Msa0389840 | AT3G53620.1 | 83.756 | 197 | 32 | 0 | 16 | 212 | 20 | 216 | 1.49e-126 | 356 |
| Msa0389840 | AT2G18230.1 | 75.879 | 199 | 48 | 0 | 14 | 212 | 20 | 218 | 1.09e-114 | 326 |
| Msa0389840 | AT5G09650.1 | 32.124 | 193 | 107 | 6 | 8 | 178 | 66 | 256 | 3.53e-18 | 81.3 |
Find 55 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACACAATTGAAAATATT+TGG | 0.130753 | 3_2:+368175 | None:intergenic |
| TTTATATTTCATGTAAAATT+TGG | 0.168389 | 3_2:-366277 | Msa0389840:three_prime_UTR |
| ATATTAATGCCACAAGATTT+TGG | 0.189369 | 3_2:+366211 | None:intergenic |
| CCTTGGCATGATCTTGAAAT+TGG | 0.231220 | 3_2:-368326 | Msa0389840:intron |
| AACAACAAATCAGAAATATA+AGG | 0.290215 | 3_2:+366236 | None:intergenic |
| TGGCAGGAGCCTGTTCTTCC+TGG | 0.300485 | 3_2:-367617 | Msa0389840:intron |
| AAAGAATTCTTTCATTCAAA+CGG | 0.380614 | 3_2:+368381 | None:intergenic |
| AAGAATTCTTTCATTCAAAC+GGG | 0.388175 | 3_2:+368382 | None:intergenic |
| CGCGGTATGCGCTGATGATC+CGG | 0.389151 | 3_2:-367432 | Msa0389840:CDS |
| ACAACAAATCAGAAATATAA+GGG | 0.394570 | 3_2:+366237 | None:intergenic |
| CATTCAAACGGGGAGTTGGG+CGG | 0.410809 | 3_2:+368393 | None:intergenic |
| CTTTCATTCAAACGGGGAGT+TGG | 0.415515 | 3_2:+368389 | None:intergenic |
| TTTCATTCAAACGGGGAGTT+GGG | 0.421103 | 3_2:+368390 | None:intergenic |
| ACTTCAACCTCATCGCCTAA+TGG | 0.427291 | 3_2:-367381 | Msa0389840:CDS |
| ATTCAAACGGGGAGTTGGGC+GGG | 0.431213 | 3_2:+368394 | None:intergenic |
| AGAAATACCTGATCAATCAT+AGG | 0.434889 | 3_2:+367560 | None:intergenic |
| AGGAAACAACCAGGAAGAAC+AGG | 0.458021 | 3_2:+367608 | None:intergenic |
| CGATGTCTTGGTTCTCATGC+AGG | 0.463888 | 3_2:-367816 | Msa0389840:intron |
| ATATTGAGAAAAGGTGTAAA+GGG | 0.464766 | 3_2:+369384 | None:intergenic |
| CTTCCAATGTTCAGGTTGAT+CGG | 0.464863 | 3_2:-367916 | Msa0389840:intron |
| AGAAGCGTTTAATCTCCATT+AGG | 0.470540 | 3_2:+367366 | None:intergenic |
| CAATGATCCACTCGATGTCT+TGG | 0.475275 | 3_2:-367828 | Msa0389840:CDS |
| AATATTGAGAAAAGGTGTAA+AGG | 0.483210 | 3_2:+369383 | None:intergenic |
| ACTAATGCCTATGATTGATC+AGG | 0.483555 | 3_2:-367567 | Msa0389840:intron |
| AAACCTTGAATAACACCAAA+AGG | 0.485269 | 3_2:+369359 | None:intergenic |
| ATGGCTTCAACAGCAGTAGA+TGG | 0.493770 | 3_2:+366785 | None:intergenic |
| GATCAGTTGCTGCTCACCCT+TGG | 0.495829 | 3_2:-368343 | Msa0389840:CDS |
| AGAGATCACTAAGGGAAGTA+AGG | 0.518040 | 3_2:-368051 | Msa0389840:CDS |
| CAAAAGGAAATATTGAGAAA+AGG | 0.521969 | 3_2:+369375 | None:intergenic |
| GGGATAAAACCGTAGTTATG+AGG | 0.523871 | 3_2:+367869 | None:intergenic |
| GTTGTTTATCCTCATAACTA+CGG | 0.525869 | 3_2:-367878 | Msa0389840:CDS |
| TTGTCTTCACATAGAGTTCG+AGG | 0.526790 | 3_2:+367848 | None:intergenic |
| GTCCGATGGCTCTTGCTCGC+AGG | 0.526935 | 3_2:+367588 | None:intergenic |
| TGTATACTTACATTGAGTGT+TGG | 0.546581 | 3_2:+366762 | None:intergenic |
| GAATTCTTTCATCTTTGTCA+AGG | 0.554674 | 3_2:-368367 | Msa0389840:CDS |
| TCAGTATAGTGCTTATACTC+CGG | 0.562072 | 3_2:+367413 | None:intergenic |
| TGTTGTTAGCCAAAATCTTG+TGG | 0.563574 | 3_2:-366220 | Msa0389840:three_prime_UTR |
| TTCCTGCGAGCAAGAGCCAT+CGG | 0.567710 | 3_2:-367590 | Msa0389840:CDS |
| TACTTACATTGAGTGTTGGA+TGG | 0.580614 | 3_2:+366766 | None:intergenic |
| TTGAAAATATTTGGTGCACC+AGG | 0.585149 | 3_2:+368184 | None:intergenic |
| GCAGGTTGTAGAGATCACTA+AGG | 0.587594 | 3_2:-368060 | Msa0389840:intron |
| CCAATTTCAAGATCATGCCA+AGG | 0.603400 | 3_2:+368326 | None:intergenic |
| AATCATAGGCATTAGTCCGA+TGG | 0.605554 | 3_2:+367574 | None:intergenic |
| TATTCTTGTCTATCTCCTCA+AGG | 0.605905 | 3_2:+366440 | None:intergenic |
| CTTGCTCGCAGGAAACAACC+AGG | 0.608952 | 3_2:+367599 | None:intergenic |
| TGTCTTCACATAGAGTTCGA+GGG | 0.623793 | 3_2:+367849 | None:intergenic |
| TTAATCTCCATTAGGCGATG+AGG | 0.630602 | 3_2:+367374 | None:intergenic |
| CAGGTTGTAGAGATCACTAA+GGG | 0.630832 | 3_2:-368059 | Msa0389840:CDS |
| CAACAAATCAGAAATATAAG+GGG | 0.633716 | 3_2:+366238 | None:intergenic |
| AGTATATTCTGCATACCTTG+AGG | 0.641114 | 3_2:-366455 | Msa0389840:CDS |
| CAATTTCAAGATCATGCCAA+GGG | 0.655845 | 3_2:+368327 | None:intergenic |
| ATGAGAACCAAGACATCGAG+TGG | 0.661639 | 3_2:+367821 | None:intergenic |
| AGAATTCTTTCATTCAAACG+GGG | 0.661736 | 3_2:+368383 | None:intergenic |
| GCTTCAACAGCAGTAGATGG+TGG | 0.680798 | 3_2:+366788 | None:intergenic |
| GAAGGATGATAAAATCATCG+CGG | 0.762714 | 3_2:-367450 | Msa0389840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATTTTGAAATTTTAAAA+TGG | - | chr3_2:367615-367634 | Msa0389840:intron | 10.0% |
| !!! | ATAAACTTTTTTTTTTTTTG+TGG | + | chr3_2:369047-369066 | None:intergenic | 10.0% |
| !!! | TATACCATTTATTTTTTAAT+TGG | - | chr3_2:369267-369286 | Msa0389840:intron | 10.0% |
| !! | TTTATATTTCATGTAAAATT+TGG | - | chr3_2:369312-369331 | Msa0389840:intron | 10.0% |
| !!! | CTTTTTCAATTTTATTCTAT+TGG | - | chr3_2:366367-366386 | Msa0389840:three_prime_UTR | 15.0% |
| !! | TAATCAAACTTGATTATTAT+TGG | + | chr3_2:366504-366523 | None:intergenic | 15.0% |
| !!! | GAATTTGAAATATAATCATA+AGG | - | chr3_2:366608-366627 | Msa0389840:intron | 15.0% |
| !! | TGTTATGATTAAAGTTTAAT+AGG | + | chr3_2:367827-367846 | None:intergenic | 15.0% |
| !!! | TGTATTTTTTTGTATTAAGT+TGG | - | chr3_2:369240-369259 | Msa0389840:intron | 15.0% |
| !! | TTCTCCAATTAAAAAATAAA+TGG | + | chr3_2:369274-369293 | None:intergenic | 15.0% |
| !! | GGTAAAATTAACTATATGAT+TGG | + | chr3_2:366272-366291 | None:intergenic | 20.0% |
| !!! | CATATAGTTAATTTTACCTT+TGG | - | chr3_2:366274-366293 | Msa0389840:three_prime_UTR | 20.0% |
| !! | ATATTATTACCACATATCAA+AGG | + | chr3_2:366464-366483 | None:intergenic | 20.0% |
| !! | GATATGTGGTAATAATATAA+AGG | - | chr3_2:366466-366485 | Msa0389840:CDS | 20.0% |
| !!! | GACTTTTGATGTATAAATAT+TGG | - | chr3_2:366544-366563 | Msa0389840:intron | 20.0% |
| !!! | TTAAACCAATTTTACTCTTA+TGG | - | chr3_2:367079-367098 | Msa0389840:intron | 20.0% |
| !! | AAAGAATTCTTTCATTCAAA+CGG | + | chr3_2:367211-367230 | None:intergenic | 20.0% |
| !! | CTTACACAATTGAAAATATT+TGG | + | chr3_2:367417-367436 | None:intergenic | 20.0% |
| !!! | ATAAATGAAGATCAAAGTTT+TGG | + | chr3_2:367441-367460 | None:intergenic | 20.0% |
| !! | AATGGACAAAAATATTAACT+TGG | - | chr3_2:367633-367652 | Msa0389840:intron | 20.0% |
| !! | TTTAATCATAACAATAGTTC+CGG | - | chr3_2:367834-367853 | Msa0389840:CDS | 20.0% |
| !! | AACATTCTGAATTACTTATA+TGG | - | chr3_2:367952-367971 | Msa0389840:intron | 20.0% |
| !! | TTGTTAACATGAGATAATAA+AGG | + | chr3_2:368262-368281 | None:intergenic | 20.0% |
| !!! | CTTATTTTCCTAAAATATAC+AGG | - | chr3_2:368543-368562 | Msa0389840:intron | 20.0% |
| !!! | AGAAACACTAATTTTTCAAA+AGG | + | chr3_2:368722-368741 | None:intergenic | 20.0% |
| !! | AGAGACAAAATATCATATTA+AGG | + | chr3_2:369088-369107 | None:intergenic | 20.0% |
| !!! | AGACAATTTTAGAATGTATT+TGG | - | chr3_2:369205-369224 | Msa0389840:intron | 20.0% |
| !! | ACAACAAATCAGAAATATAA+GGG | + | chr3_2:369355-369374 | None:intergenic | 20.0% |
| !! | AACAACAAATCAGAAATATA+AGG | + | chr3_2:369356-369375 | None:intergenic | 20.0% |
| !! | ATATTGAGAAAAGGTGTAAA+GGG | + | chr3_2:366208-366227 | None:intergenic | 25.0% |
| !! | AATATTGAGAAAAGGTGTAA+AGG | + | chr3_2:366209-366228 | None:intergenic | 25.0% |
| ! | CAAAAGGAAATATTGAGAAA+AGG | + | chr3_2:366217-366236 | None:intergenic | 25.0% |
| !! | CTTTTCTCAATATTTCCTTT+TGG | - | chr3_2:366215-366234 | Msa0389840:three_prime_UTR | 25.0% |
| !! | GTTAATTTTACCTTTGGTAT+TGG | - | chr3_2:366280-366299 | Msa0389840:three_prime_UTR | 25.0% |
| ! | ATACATAAATCCAATACCAA+AGG | + | chr3_2:366293-366312 | None:intergenic | 25.0% |
| ! | ATTATACAGTGGTTAATCAA+TGG | + | chr3_2:366403-366422 | None:intergenic | 25.0% |
| ! | TATCAAAGGAATCACAAAAA+TGG | + | chr3_2:366450-366469 | None:intergenic | 25.0% |
| ! | GTAAAAATATAGTCAAGTGT+TGG | - | chr3_2:366586-366605 | Msa0389840:intron | 25.0% |
| !! | TTGAATGAAGCAAATTCTTT+TGG | - | chr3_2:366651-366670 | Msa0389840:intron | 25.0% |
| !! | TGGTGATATATTGACTAATA+AGG | - | chr3_2:366671-366690 | Msa0389840:intron | 25.0% |
| !! | GGTGATATATTGACTAATAA+GGG | - | chr3_2:366672-366691 | Msa0389840:intron | 25.0% |
| ! | ATGATTATGATCCAATATCT+AGG | + | chr3_2:366717-366736 | None:intergenic | 25.0% |
| !!! | CGATTTGGTTTTTAAAACAT+TGG | - | chr3_2:366900-366919 | Msa0389840:intron | 25.0% |
| ! | AAGAATTCTTTCATTCAAAC+GGG | + | chr3_2:367210-367229 | None:intergenic | 25.0% |
| !! | TGATCTTAATTTTCATGTGA+AGG | - | chr3_2:367381-367400 | Msa0389840:CDS | 25.0% |
| !!! | GGAAAATGTTAAGTATTGAA+GGG | + | chr3_2:367464-367483 | None:intergenic | 25.0% |
| !!! | TGGAAAATGTTAAGTATTGA+AGG | + | chr3_2:367465-367484 | None:intergenic | 25.0% |
| ! | CAAAAAGACTGGATTAATTA+AGG | - | chr3_2:367577-367596 | Msa0389840:CDS | 25.0% |
| ! | TAACTATTCAGAAAAAAGCA+TGG | + | chr3_2:367880-367899 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAGTAAACTAG+AGG | + | chr3_2:368093-368112 | None:intergenic | 25.0% |
| ! | AGTTATTATCATACTTACAC+AGG | - | chr3_2:368112-368131 | Msa0389840:intron | 25.0% |
| ! | GTTATTATCATACTTACACA+GGG | - | chr3_2:368113-368132 | Msa0389840:intron | 25.0% |
| ! | TTATTATCATACTTACACAG+GGG | - | chr3_2:368114-368133 | Msa0389840:intron | 25.0% |
| ! | AATAAGCTTAAAACAGCTTA+TGG | + | chr3_2:368529-368548 | None:intergenic | 25.0% |
| !! | TAAGCTATCCTGTATATTTT+AGG | + | chr3_2:368554-368573 | None:intergenic | 25.0% |
| ! | GTGAAAGAATTTATCATCTA+TGG | - | chr3_2:368908-368927 | Msa0389840:intron | 25.0% |
| !! | CTAATGGTATATAACCTTTT+TGG | + | chr3_2:368934-368953 | None:intergenic | 25.0% |
| !! | AGAAAAAACACATTTGCTAA+TGG | + | chr3_2:368950-368969 | None:intergenic | 25.0% |
| ! | CATAATATATGCAAAGTTTG+AGG | - | chr3_2:369006-369025 | Msa0389840:intron | 25.0% |
| !!! | TTTTTTTTTTTGTGGTGTCT+GGG | + | chr3_2:369039-369058 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTGTGGTGTC+TGG | + | chr3_2:369040-369059 | None:intergenic | 25.0% |
| !! | ATGATATTTTGTCTCTGATT+TGG | - | chr3_2:369092-369111 | Msa0389840:intron | 25.0% |
| ! | CAACAAATCAGAAATATAAG+GGG | + | chr3_2:369354-369373 | None:intergenic | 25.0% |
| !! | ATATTAATGCCACAAGATTT+TGG | + | chr3_2:369381-369400 | None:intergenic | 25.0% |
| !!! | TTTCCTTTTGGTGTTATTCA+AGG | - | chr3_2:366227-366246 | Msa0389840:three_prime_UTR | 30.0% |
| AAACCTTGAATAACACCAAA+AGG | + | chr3_2:366233-366252 | None:intergenic | 30.0% | |
| TTTGTGATTCCTTTGATATG+TGG | - | chr3_2:366452-366471 | Msa0389840:CDS | 30.0% | |
| ! | TATTGACTAATAAGGGTCTT+TGG | - | chr3_2:366679-366698 | Msa0389840:intron | 30.0% |
| !!! | CAATGTTTTAACAACCGAAT+CGG | - | chr3_2:366745-366764 | Msa0389840:intron | 30.0% |
| AACAAAACTGTAGACAATAC+CGG | + | chr3_2:366793-366812 | None:intergenic | 30.0% | |
| !!! | CTACAGTTTTGTTATTTGAG+TGG | - | chr3_2:366800-366819 | Msa0389840:CDS | 30.0% |
| !! | TGCATTGGTTCTAAATATCA+AGG | + | chr3_2:366938-366957 | None:intergenic | 30.0% |
| !! | TAGTACATAGTTCTAAACTG+TGG | + | chr3_2:367018-367037 | None:intergenic | 30.0% |
| ! | ACAGTTTAGAACTATGTACT+AGG | - | chr3_2:367017-367036 | Msa0389840:intron | 30.0% |
| TGACTCCATAAGAGTAAAAT+TGG | + | chr3_2:367087-367106 | None:intergenic | 30.0% | |
| AGAATTCTTTCATTCAAACG+GGG | + | chr3_2:367209-367228 | None:intergenic | 30.0% | |
| GAATTCTTTCATCTTTGTCA+AGG | - | chr3_2:367222-367241 | Msa0389840:intron | 30.0% | |
| ATGCACAAATCAAGCTAAAT+AGG | + | chr3_2:367318-367337 | None:intergenic | 30.0% | |
| TATGAACTTGACAAAAAGAC+TGG | - | chr3_2:367566-367585 | Msa0389840:intron | 30.0% | |
| GTTGTTTATCCTCATAACTA+CGG | - | chr3_2:367711-367730 | Msa0389840:intron | 30.0% | |
| TTCTGAATTACTTATATGGC+AGG | - | chr3_2:367956-367975 | Msa0389840:intron | 30.0% | |
| AGAAATACCTGATCAATCAT+AGG | + | chr3_2:368032-368051 | None:intergenic | 30.0% | |
| TATTATCATACTTACACAGG+GGG | - | chr3_2:368115-368134 | Msa0389840:intron | 30.0% | |
| ! | GGACATTTTATGAGTTGTTT+CGG | + | chr3_2:368508-368527 | None:intergenic | 30.0% |
| CAAAAGGACAAAGATATGTT+TGG | + | chr3_2:368706-368725 | None:intergenic | 30.0% | |
| AGACAAAAAGAATGAGAACA+AGG | - | chr3_2:368755-368774 | Msa0389840:intron | 30.0% | |
| TGTATACTTACATTGAGTGT+TGG | + | chr3_2:368830-368849 | None:intergenic | 30.0% | |
| TTTATCATCTATGGCCAAAA+AGG | - | chr3_2:368917-368936 | Msa0389840:intron | 30.0% | |
| !!! | TTTTTTTTTTGTGGTGTCTG+GGG | + | chr3_2:369038-369057 | None:intergenic | 30.0% |
| TCGTATGAGTTTACCATCAT+AGG | - | chr3_2:366329-366348 | Msa0389840:three_prime_UTR | 35.0% | |
| ! | TTGCTAGTTTCAACCTATGA+TGG | + | chr3_2:366345-366364 | None:intergenic | 35.0% |
| CAAGAACTGTCATTATACAG+TGG | + | chr3_2:366414-366433 | None:intergenic | 35.0% | |
| CTAATAAGGGTCTTTGGATT+TGG | - | chr3_2:366685-366704 | Msa0389840:intron | 35.0% | |
| AATCGAACGTCAAACTTACT+AGG | + | chr3_2:366885-366904 | None:intergenic | 35.0% | |
| AGTAAGTTTGACGTTCGATT+TGG | - | chr3_2:366885-366904 | Msa0389840:intron | 35.0% | |
| TCTCCGAAATCTGTATATTG+CGG | - | chr3_2:366991-367010 | Msa0389840:intron | 35.0% | |
| CAATTTCAAGATCATGCCAA+GGG | + | chr3_2:367265-367284 | None:intergenic | 35.0% | |
| ! | TAATTTTCATGTGAAGGTCC+TGG | - | chr3_2:367387-367406 | Msa0389840:CDS | 35.0% |
| !! | TTGAAAATATTTGGTGCACC+AGG | + | chr3_2:367408-367427 | None:intergenic | 35.0% |
| ! | AATGATTAGTTGCTACATGC+AGG | - | chr3_2:367511-367530 | Msa0389840:intron | 35.0% |
| CTTTAATGCTTCCAATGTTC+AGG | - | chr3_2:367665-367684 | Msa0389840:intron | 35.0% | |
| ACTAATGCCTATGATTGATC+AGG | - | chr3_2:368022-368041 | Msa0389840:CDS | 35.0% | |
| GAAGGATGATAAAATCATCG+CGG | - | chr3_2:368139-368158 | Msa0389840:intron | 35.0% | |
| TCAGTATAGTGCTTATACTC+CGG | + | chr3_2:368179-368198 | None:intergenic | 35.0% | |
| !! | AGAAGCGTTTAATCTCCATT+AGG | + | chr3_2:368226-368245 | None:intergenic | 35.0% |
| ATGTTGCATAACAAGCTCAT+TGG | - | chr3_2:368283-368302 | Msa0389840:intron | 35.0% | |
| ATAGGCACTTAATGTGTGTT+TGG | + | chr3_2:368420-368439 | None:intergenic | 35.0% | |
| ACACACATTAAGTGCCTATT+TGG | - | chr3_2:368421-368440 | Msa0389840:CDS | 35.0% | |
| CCAAAAAAGTCGATCCAAAT+AGG | + | chr3_2:368438-368457 | None:intergenic | 35.0% | |
| !!! | CCTATTTGGATCGACTTTTT+TGG | - | chr3_2:368435-368454 | Msa0389840:intron | 35.0% |
| TAAGCATTTGTGAGACAGTT+TGG | - | chr3_2:368473-368492 | Msa0389840:intron | 35.0% | |
| AAGGACAAAGATATGTTTGG+AGG | + | chr3_2:368703-368722 | None:intergenic | 35.0% | |
| CAAAAAGAATGAGAACAAGG+AGG | - | chr3_2:368758-368777 | Msa0389840:intron | 35.0% | |
| !! | TACTTACATTGAGTGTTGGA+TGG | + | chr3_2:368826-368845 | None:intergenic | 35.0% |
| TACTAACTGAGATAAGCTCA+CGG | + | chr3_2:368977-368996 | None:intergenic | 35.0% | |
| TGAGCTTATCTCAGTTAGTA+AGG | - | chr3_2:368977-368996 | Msa0389840:intron | 35.0% | |
| AGTATATTCTGCATACCTTG+AGG | - | chr3_2:369134-369153 | Msa0389840:intron | 35.0% | |
| TATTCTTGTCTATCTCCTCA+AGG | + | chr3_2:369152-369171 | None:intergenic | 35.0% | |
| TGTTGTTAGCCAAAATCTTG+TGG | - | chr3_2:369369-369388 | Msa0389840:five_prime_UTR | 35.0% | |
| ! | TTTGGACTAGGCCTAGATAT+TGG | - | chr3_2:366703-366722 | Msa0389840:intron | 40.0% |
| !! | GTTTTAACAACCGAATCGGA+CGG | - | chr3_2:366749-366768 | Msa0389840:intron | 40.0% |
| !! | GTTCAAGTTGAACTGTGAAC+CGG | - | chr3_2:366771-366790 | Msa0389840:intron | 40.0% |
| TTATTTGAGTGGTTCAACCG+TGG | - | chr3_2:366811-366830 | Msa0389840:CDS | 40.0% | |
| GAACCATTCAAAACAGAACG+AGG | + | chr3_2:366837-366856 | None:intergenic | 40.0% | |
| CAAAGTAGTTGTACCATGAC+TGG | - | chr3_2:366856-366875 | Msa0389840:intron | 40.0% | |
| AACCAATGCAACTGCAATTG+TGG | - | chr3_2:366948-366967 | Msa0389840:intron | 40.0% | |
| GGTCCGCAATATACAGATTT+CGG | + | chr3_2:366997-367016 | None:intergenic | 40.0% | |
| TTTCATTCAAACGGGGAGTT+GGG | + | chr3_2:367202-367221 | None:intergenic | 40.0% | |
| CCAATTTCAAGATCATGCCA+AGG | + | chr3_2:367266-367285 | None:intergenic | 40.0% | |
| CCTTGGCATGATCTTGAAAT+TGG | - | chr3_2:367263-367282 | Msa0389840:intron | 40.0% | |
| CAGGTTGTAGAGATCACTAA+GGG | - | chr3_2:367530-367549 | Msa0389840:intron | 40.0% | |
| AGAGATCACTAAGGGAAGTA+AGG | - | chr3_2:367538-367557 | Msa0389840:intron | 40.0% | |
| !! | CTTCCAATGTTCAGGTTGAT+CGG | - | chr3_2:367673-367692 | Msa0389840:intron | 40.0% |
| AATCCGATCAACCTGAACAT+TGG | + | chr3_2:367679-367698 | None:intergenic | 40.0% | |
| GGGATAAAACCGTAGTTATG+AGG | + | chr3_2:367723-367742 | None:intergenic | 40.0% | |
| TGTCTTCACATAGAGTTCGA+GGG | + | chr3_2:367743-367762 | None:intergenic | 40.0% | |
| TTGTCTTCACATAGAGTTCG+AGG | + | chr3_2:367744-367763 | None:intergenic | 40.0% | |
| ATAGGTCACAACTCACAACA+AGG | + | chr3_2:367809-367828 | None:intergenic | 40.0% | |
| CATAACAATAGTTCCGGTTC+TGG | - | chr3_2:367840-367859 | Msa0389840:CDS | 40.0% | |
| ! | TCGATATTTCTGTCCAGAAC+CGG | + | chr3_2:367856-367875 | None:intergenic | 40.0% |
| AATCATAGGCATTAGTCCGA+TGG | + | chr3_2:368018-368037 | None:intergenic | 40.0% | |
| TTAATCTCCATTAGGCGATG+AGG | + | chr3_2:368218-368237 | None:intergenic | 40.0% | |
| !!! | TTTTGTCTCTGATTTGGTGC+AGG | - | chr3_2:369098-369117 | Msa0389840:intron | 40.0% |
| !! | TTTGTCTCTGATTTGGTGCA+GGG | - | chr3_2:369099-369118 | Msa0389840:intron | 40.0% |
| AGGGTCTTTGGATTTGGACT+AGG | - | chr3_2:366691-366710 | Msa0389840:intron | 45.0% | |
| TCAACTTGAACCGTCCGATT+CGG | + | chr3_2:366762-366781 | None:intergenic | 45.0% | |
| TTCAAAACAGAACGAGGCCA+CGG | + | chr3_2:366831-366850 | None:intergenic | 45.0% | |
| !! | TGGCCTCGTTCTGTTTTGAA+TGG | - | chr3_2:366831-366850 | Msa0389840:CDS | 45.0% |
| AGTAGTTGTACCATGACTGG+AGG | - | chr3_2:366859-366878 | Msa0389840:intron | 45.0% | |
| GACCACAATTGCAGTTGCAT+TGG | + | chr3_2:366953-366972 | None:intergenic | 45.0% | |
| CTTTCATTCAAACGGGGAGT+TGG | + | chr3_2:367203-367222 | None:intergenic | 45.0% | |
| GCAGAAACAGCATAACACAG+TGG | + | chr3_2:367485-367504 | None:intergenic | 45.0% | |
| GCAGGTTGTAGAGATCACTA+AGG | - | chr3_2:367529-367548 | Msa0389840:intron | 45.0% | |
| CAATGATCCACTCGATGTCT+TGG | - | chr3_2:367761-367780 | Msa0389840:intron | 45.0% | |
| ATGAGAACCAAGACATCGAG+TGG | + | chr3_2:367771-367790 | None:intergenic | 45.0% | |
| AGGAAACAACCAGGAAGAAC+AGG | + | chr3_2:367984-368003 | None:intergenic | 45.0% | |
| ACTTCAACCTCATCGCCTAA+TGG | - | chr3_2:368208-368227 | Msa0389840:intron | 45.0% | |
| ATGGCTTCAACAGCAGTAGA+TGG | + | chr3_2:368807-368826 | None:intergenic | 45.0% | |
| !!! | ATTTTCTATTTTTAAATTTT+TGG | - | chr3_2:368358-368377 | Msa0389840:CDS | 5.0% |
| ACTTACTAGGCCTCCAGTCA+TGG | + | chr3_2:366872-366891 | None:intergenic | 50.0% | |
| ! | CGATGTCTTGGTTCTCATGC+AGG | - | chr3_2:367773-367792 | Msa0389840:intron | 50.0% |
| CATACTTACACAGGGGGAGA+AGG | - | chr3_2:368121-368140 | Msa0389840:intron | 50.0% | |
| GCTTCAACAGCAGTAGATGG+TGG | + | chr3_2:368804-368823 | None:intergenic | 50.0% | |
| ATTCAAACGGGGAGTTGGGC+GGG | + | chr3_2:367198-367217 | None:intergenic | 55.0% | |
| CATTCAAACGGGGAGTTGGG+CGG | + | chr3_2:367199-367218 | None:intergenic | 55.0% | |
| GATCAGTTGCTGCTCACCCT+TGG | - | chr3_2:367246-367265 | Msa0389840:intron | 55.0% | |
| CTTGCTCGCAGGAAACAACC+AGG | + | chr3_2:367993-368012 | None:intergenic | 55.0% | |
| TTCCTGCGAGCAAGAGCCAT+CGG | - | chr3_2:367999-368018 | Msa0389840:intron | 55.0% | |
| TGGCAGGAGCCTGTTCTTCC+TGG | - | chr3_2:367972-367991 | Msa0389840:intron | 60.0% | |
| ! | CGCGGTATGCGCTGATGATC+CGG | - | chr3_2:368157-368176 | Msa0389840:intron | 60.0% |
| GTCCGATGGCTCTTGCTCGC+AGG | + | chr3_2:368004-368023 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 366197 | 369414 | 366197 | ID=Msa0389840;Name=Msa0389840 |
| chr3_2 | mRNA | 366197 | 369414 | 366197 | ID=Msa0389840-mRNA-1;Parent=Msa0389840;Name=Msa0389840-mRNA-1;_AED=0.15;_eAED=0.15;_QI=52|1|1|1|0.87|0.88|9|252|212 |
| chr3_2 | exon | 366197 | 366491 | 366197 | ID=Msa0389840-mRNA-1:exon:43;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 366773 | 366854 | 366773 | ID=Msa0389840-mRNA-1:exon:42;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 367357 | 367477 | 367357 | ID=Msa0389840-mRNA-1:exon:41;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 367568 | 367633 | 367568 | ID=Msa0389840-mRNA-1:exon:40;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 367817 | 367924 | 367817 | ID=Msa0389840-mRNA-1:exon:39;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 368013 | 368078 | 368013 | ID=Msa0389840-mRNA-1:exon:38;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 368180 | 368208 | 368180 | ID=Msa0389840-mRNA-1:exon:37;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 368327 | 368450 | 368327 | ID=Msa0389840-mRNA-1:exon:36;Parent=Msa0389840-mRNA-1 |
| chr3_2 | exon | 369363 | 369414 | 369363 | ID=Msa0389840-mRNA-1:exon:35;Parent=Msa0389840-mRNA-1 |
| chr3_2 | five_prime_UTR | 369363 | 369414 | 369363 | ID=Msa0389840-mRNA-1:five_prime_utr;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 368327 | 368450 | 368327 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 368180 | 368208 | 368180 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 368013 | 368078 | 368013 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 367817 | 367924 | 367817 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 367568 | 367633 | 367568 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 367357 | 367477 | 367357 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 366773 | 366854 | 366773 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | CDS | 366449 | 366491 | 366449 | ID=Msa0389840-mRNA-1:cds;Parent=Msa0389840-mRNA-1 |
| chr3_2 | three_prime_UTR | 366197 | 366448 | 366197 | ID=Msa0389840-mRNA-1:three_prime_utr;Parent=Msa0389840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
