Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235780 | KEH18552.1 | 95.909 | 220 | 9 | 0 | 14 | 233 | 38 | 257 | 3.49e-156 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235780 | sp|Q93V56|IPYR1_ARATH | 87.736 | 212 | 26 | 0 | 22 | 233 | 1 | 212 | 2.21e-139 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235780 | A0A072TMB0 | 95.909 | 220 | 9 | 0 | 14 | 233 | 38 | 257 | 1.67e-156 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031650 | Msa1235780 | 0.807604 | 4.661897e-50 | -8.615850e-47 |
| Msa0171740 | Msa1235780 | 0.806715 | 7.190888e-50 | -8.615850e-47 |
| Msa1235780 | Msa1236030 | 0.914440 | 1.911859e-84 | -8.615850e-47 |
| Msa1235780 | Msa1262320 | 0.834469 | 2.944514e-56 | -8.615850e-47 |
| Msa1235780 | Msa1299310 | 0.813941 | 1.984001e-51 | -8.615850e-47 |
| Msa0379170 | Msa1235780 | 0.807677 | 4.497855e-50 | -8.615850e-47 |
| Msa0389840 | Msa1235780 | 0.827372 | 1.622354e-54 | -8.615850e-47 |
| Msa0428760 | Msa1235780 | 0.807670 | 4.513119e-50 | -8.615850e-47 |
| Msa0291880 | Msa1235780 | 0.805158 | 1.527826e-49 | -8.615850e-47 |
| Msa0336640 | Msa1235780 | 0.808835 | 2.548196e-50 | -8.615850e-47 |
| Msa1175600 | Msa1235780 | 0.810896 | 9.176850e-51 | -8.615850e-47 |
| Msa1211160 | Msa1235780 | 0.820025 | 8.529424e-53 | -8.615850e-47 |
| Msa0597800 | Msa1235780 | 0.801310 | 9.565561e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235780 | MtrunA17_Chr8g0345781 | 98.585 | 212 | 3 | 0 | 22 | 233 | 6 | 217 | 1.44e-158 | 437 |
| Msa1235780 | MtrunA17_Chr5g0404551 | 78.673 | 211 | 45 | 0 | 23 | 233 | 3 | 213 | 5.15e-128 | 360 |
| Msa1235780 | MtrunA17_Chr1g0182331 | 84.772 | 197 | 30 | 0 | 37 | 233 | 20 | 216 | 2.43e-127 | 358 |
| Msa1235780 | MtrunA17_Chr8g0372981 | 77.315 | 216 | 48 | 1 | 19 | 233 | 11 | 226 | 6.22e-123 | 348 |
| Msa1235780 | MtrunA17_Chr7g0276441 | 93.333 | 165 | 11 | 0 | 69 | 233 | 29 | 193 | 6.09e-114 | 324 |
| Msa1235780 | MtrunA17_Chr1g0200691 | 63.968 | 247 | 49 | 2 | 14 | 220 | 39 | 285 | 1.11e-108 | 314 |
| Msa1235780 | MtrunA17_Chr2g0280151 | 33.333 | 168 | 85 | 6 | 56 | 199 | 82 | 246 | 2.46e-16 | 76.3 |
| Msa1235780 | MtrunA17_Chr1g0210921 | 63.462 | 52 | 17 | 1 | 152 | 201 | 12 | 63 | 8.20e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235780 | AT1G01050.1 | 87.736 | 212 | 26 | 0 | 22 | 233 | 1 | 212 | 2.25e-140 | 392 |
| Msa1235780 | AT1G01050.2 | 87.736 | 212 | 26 | 0 | 22 | 233 | 1 | 212 | 2.25e-140 | 392 |
| Msa1235780 | AT2G46860.1 | 86.111 | 216 | 26 | 1 | 22 | 233 | 1 | 216 | 2.92e-138 | 387 |
| Msa1235780 | AT4G01480.1 | 88.442 | 199 | 23 | 0 | 35 | 233 | 18 | 216 | 1.45e-133 | 375 |
| Msa1235780 | AT4G01480.2 | 88.442 | 199 | 23 | 0 | 35 | 233 | 18 | 216 | 1.45e-133 | 375 |
| Msa1235780 | AT3G53620.1 | 84.264 | 197 | 31 | 0 | 37 | 233 | 20 | 216 | 7.23e-127 | 358 |
| Msa1235780 | AT2G18230.1 | 76.382 | 199 | 47 | 0 | 35 | 233 | 20 | 218 | 7.69e-115 | 327 |
| Msa1235780 | AT5G09650.1 | 32.124 | 193 | 107 | 6 | 29 | 199 | 66 | 256 | 3.06e-18 | 82.0 |
Find 54 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACACAATTGAAAATATT+TGG | 0.130753 | 8_2:+14031554 | None:intergenic |
| TATATATTTCATGTAAAATT+TGG | 0.168389 | 8_2:-14029732 | Msa1235780:three_prime_UTR |
| ATATTAATGCCACAAGATTT+TGG | 0.198248 | 8_2:+14029669 | None:intergenic |
| CCTTGGCATGATCTTGAAAT+TGG | 0.231220 | 8_2:-14031705 | Msa1235780:intron |
| GTTAACAAATCAGAAATATA+AGG | 0.249573 | 8_2:+14029691 | None:intergenic |
| TGGCAGGAGCCTGTTCTTCC+TGG | 0.300485 | 8_2:-14030997 | Msa1235780:intron |
| AAAGAATTCTTTCATTCAAA+CGG | 0.380614 | 8_2:+14031760 | None:intergenic |
| AAGAATTCTTTCATTCAAAC+GGG | 0.388175 | 8_2:+14031761 | None:intergenic |
| CGCGGTATGCGCTGATGATC+CGG | 0.389151 | 8_2:-14030812 | Msa1235780:CDS |
| GTTGTTTATCCTCATAACTA+TGG | 0.399405 | 8_2:-14031258 | Msa1235780:CDS |
| TTAACAAATCAGAAATATAA+GGG | 0.404778 | 8_2:+14029692 | None:intergenic |
| CATTCAAACGGGGAGTTGGG+CGG | 0.410809 | 8_2:+14031772 | None:intergenic |
| CTTTCATTCAAACGGGGAGT+TGG | 0.415515 | 8_2:+14031768 | None:intergenic |
| TTTCATTCAAACGGGGAGTT+GGG | 0.421103 | 8_2:+14031769 | None:intergenic |
| ACTTCAACCTCATCGCCTAA+TGG | 0.427291 | 8_2:-14030761 | Msa1235780:CDS |
| ATTCAAACGGGGAGTTGGGC+GGG | 0.431213 | 8_2:+14031773 | None:intergenic |
| AGAAATACCTGATCAATCAT+AGG | 0.434889 | 8_2:+14030940 | None:intergenic |
| AGGAAACAACCAGGAAGAAC+AGG | 0.458021 | 8_2:+14030988 | None:intergenic |
| CGATGTCTTGGTTCTCATGC+AGG | 0.463888 | 8_2:-14031196 | Msa1235780:intron |
| CTTCCAATGTTCAGGTTGAT+CGG | 0.464863 | 8_2:-14031296 | Msa1235780:intron |
| AGAAGCGTTTAATCTCCATT+AGG | 0.470540 | 8_2:+14030746 | None:intergenic |
| CAATGATCCACTCGATGTCT+TGG | 0.475275 | 8_2:-14031208 | Msa1235780:CDS |
| ATGGCATCAACAGCAGTAGA+TGG | 0.493770 | 8_2:+14030165 | None:intergenic |
| ACTAATGCCTATGATTGATC+AGG | 0.499567 | 8_2:-14030947 | Msa1235780:intron |
| TTCCTGCGAGCAAGAGCCAT+TGG | 0.508042 | 8_2:-14030970 | Msa1235780:CDS |
| GATCAGTTGCGGCTCACCCT+TGG | 0.512919 | 8_2:-14031722 | Msa1235780:CDS |
| AGAGATCACTAAGGGAAGTA+AGG | 0.518040 | 8_2:-14031430 | Msa1235780:CDS |
| TTGTCTTCACATAGAGTTCG+AGG | 0.526790 | 8_2:+14031228 | None:intergenic |
| GTCCAATGGCTCTTGCTCGC+AGG | 0.526935 | 8_2:+14030968 | None:intergenic |
| GGGATAAAACCATAGTTATG+AGG | 0.531057 | 8_2:+14031249 | None:intergenic |
| ATTTGTTAACCAAAATCTTG+TGG | 0.546058 | 8_2:-14029678 | Msa1235780:three_prime_UTR |
| TGTATACTTACATTGAGTGT+TGG | 0.546581 | 8_2:+14030142 | None:intergenic |
| GAATTCTTTCATCTTTGTCA+AGG | 0.554674 | 8_2:-14031746 | Msa1235780:CDS |
| TCAGTATAGTGCTTATACTC+CGG | 0.562072 | 8_2:+14030793 | None:intergenic |
| TTGAAAATATTTGGTGCACC+AGG | 0.585149 | 8_2:+14031563 | None:intergenic |
| GCAGGTTGTAGAGATCACTA+AGG | 0.587594 | 8_2:-14031439 | Msa1235780:intron |
| AATCATAGGCATTAGTCCAA+TGG | 0.593270 | 8_2:+14030954 | None:intergenic |
| AGACAAGAAGAATGAGAACA+AGG | 0.595962 | 8_2:-14030214 | Msa1235780:CDS |
| TATTCTTGTCTATCTCCTCA+AGG | 0.602254 | 8_2:+14029894 | None:intergenic |
| CCAATTTCAAGATCATGCCA+AGG | 0.603400 | 8_2:+14031705 | None:intergenic |
| CTTGCTCGCAGGAAACAACC+AGG | 0.608952 | 8_2:+14030979 | None:intergenic |
| TGTCTTCACATAGAGTTCGA+GGG | 0.623793 | 8_2:+14031229 | None:intergenic |
| TACTTACATTGAGTGTTGGA+TGG | 0.629275 | 8_2:+14030146 | None:intergenic |
| TTAATCTCCATTAGGCGATG+AGG | 0.630602 | 8_2:+14030754 | None:intergenic |
| CAGGTTGTAGAGATCACTAA+GGG | 0.630832 | 8_2:-14031438 | Msa1235780:CDS |
| TAACAAATCAGAAATATAAG+GGG | 0.638800 | 8_2:+14029693 | None:intergenic |
| AGTATATTCTGCATACCTTG+AGG | 0.641114 | 8_2:-14029909 | Msa1235780:CDS |
| CAATTTCAAGATCATGCCAA+GGG | 0.655845 | 8_2:+14031706 | None:intergenic |
| ATGAGAACCAAGACATCGAG+TGG | 0.661639 | 8_2:+14031201 | None:intergenic |
| AGAATTCTTTCATTCAAACG+GGG | 0.661736 | 8_2:+14031762 | None:intergenic |
| TTTGTCAAGGAGATCAGTTG+CGG | 0.673037 | 8_2:-14031733 | Msa1235780:CDS |
| GCATCAACAGCAGTAGATGG+TGG | 0.675653 | 8_2:+14030168 | None:intergenic |
| CAAGAAGAATGAGAACAAGG+AGG | 0.714358 | 8_2:-14030211 | Msa1235780:CDS |
| GAAGGATGATAAAATCATCG+CGG | 0.762714 | 8_2:-14030830 | Msa1235780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATGGTATATAATATTTT+TGG | + | chr8_2:14031490-14031509 | None:intergenic | 10.0% |
| !! | TATATATTTCATGTAAAATT+TGG | - | chr8_2:14031793-14031812 | Msa1235780:CDS | 10.0% |
| !!! | TTAATGGTATATAATATTTT+TGG | + | chr8_2:14031490-14031509 | None:intergenic | 10.0% |
| !! | TATATATTTCATGTAAAATT+TGG | - | chr8_2:14031793-14031812 | Msa1235780:CDS | 10.0% |
| !! | TGTTATGATTAAAGTTTAAT+AGG | + | chr8_2:14030383-14030402 | None:intergenic | 15.0% |
| !!! | TGTATTTTTTTGTATTAAGT+TGG | - | chr8_2:14031722-14031741 | Msa1235780:CDS | 15.0% |
| !!! | CTATACCATTTATTTTTAAT+TGG | - | chr8_2:14031748-14031767 | Msa1235780:CDS | 15.0% |
| !! | TTAACAAATCAGAAATATAA+GGG | + | chr8_2:14031836-14031855 | None:intergenic | 15.0% |
| !! | TGTTATGATTAAAGTTTAAT+AGG | + | chr8_2:14030383-14030402 | None:intergenic | 15.0% |
| !!! | TGTATTTTTTTGTATTAAGT+TGG | - | chr8_2:14031722-14031741 | Msa1235780:CDS | 15.0% |
| !!! | CTATACCATTTATTTTTAAT+TGG | - | chr8_2:14031748-14031767 | Msa1235780:CDS | 15.0% |
| !! | TTAACAAATCAGAAATATAA+GGG | + | chr8_2:14031836-14031855 | None:intergenic | 15.0% |
| !!! | ACATTTGATCTTAATTTTTG+TGG | - | chr8_2:14029670-14029689 | Msa1235780:three_prime_UTR | 20.0% |
| !! | AAAGAATTCTTTCATTCAAA+CGG | + | chr8_2:14029768-14029787 | None:intergenic | 20.0% |
| !! | CTTACACAATTGAAAATATT+TGG | + | chr8_2:14029974-14029993 | None:intergenic | 20.0% |
| !!! | ATAAATGAAGATCAAAGTTT+TGG | + | chr8_2:14029998-14030017 | None:intergenic | 20.0% |
| !!! | TTTCATTTTGAAATTCGAAA+TGG | - | chr8_2:14030171-14030190 | Msa1235780:CDS | 20.0% |
| !! | TTTAATCATAACAATAGTTC+CGG | - | chr8_2:14030390-14030409 | Msa1235780:intron | 20.0% |
| !! | AACATTCTGAATTACTTATA+TGG | - | chr8_2:14030508-14030527 | Msa1235780:intron | 20.0% |
| !! | TTGTTAACATGAGATAATAA+AGG | + | chr8_2:14030818-14030837 | None:intergenic | 20.0% |
| !!! | CTTATTTTCCTAAAATATAC+AGG | - | chr8_2:14031099-14031118 | Msa1235780:intron | 20.0% |
| !!! | AGAAACACTAATTTTTCAAA+AGG | + | chr8_2:14031278-14031297 | None:intergenic | 20.0% |
| !!! | ACATTAAGCATATTTGTTAA+TGG | + | chr8_2:14031506-14031525 | None:intergenic | 20.0% |
| !! | AGAGACAAAATATCATATTA+AGG | + | chr8_2:14031570-14031589 | None:intergenic | 20.0% |
| !!! | AGACAATTTTTGAATGTATT+TGG | - | chr8_2:14031687-14031706 | Msa1235780:intron | 20.0% |
| !!! | AATTTTTGAATGTATTTGGA+TGG | - | chr8_2:14031691-14031710 | Msa1235780:intron | 20.0% |
| !! | GTTCTCCAATTAAAAATAAA+TGG | + | chr8_2:14031756-14031775 | None:intergenic | 20.0% |
| !! | TAACAAATCAGAAATATAAG+GGG | + | chr8_2:14031835-14031854 | None:intergenic | 20.0% |
| !! | GTTAACAAATCAGAAATATA+AGG | + | chr8_2:14031837-14031856 | None:intergenic | 20.0% |
| !!! | ACATTTGATCTTAATTTTTG+TGG | - | chr8_2:14029670-14029689 | Msa1235780:three_prime_UTR | 20.0% |
| !! | AAAGAATTCTTTCATTCAAA+CGG | + | chr8_2:14029768-14029787 | None:intergenic | 20.0% |
| !! | CTTACACAATTGAAAATATT+TGG | + | chr8_2:14029974-14029993 | None:intergenic | 20.0% |
| !!! | ATAAATGAAGATCAAAGTTT+TGG | + | chr8_2:14029998-14030017 | None:intergenic | 20.0% |
| !!! | TTTCATTTTGAAATTCGAAA+TGG | - | chr8_2:14030171-14030190 | Msa1235780:CDS | 20.0% |
| !! | TTTAATCATAACAATAGTTC+CGG | - | chr8_2:14030390-14030409 | Msa1235780:intron | 20.0% |
| !! | AACATTCTGAATTACTTATA+TGG | - | chr8_2:14030508-14030527 | Msa1235780:intron | 20.0% |
| !! | TTGTTAACATGAGATAATAA+AGG | + | chr8_2:14030818-14030837 | None:intergenic | 20.0% |
| !!! | CTTATTTTCCTAAAATATAC+AGG | - | chr8_2:14031099-14031118 | Msa1235780:intron | 20.0% |
| !!! | AGAAACACTAATTTTTCAAA+AGG | + | chr8_2:14031278-14031297 | None:intergenic | 20.0% |
| !!! | ACATTAAGCATATTTGTTAA+TGG | + | chr8_2:14031506-14031525 | None:intergenic | 20.0% |
| !! | AGAGACAAAATATCATATTA+AGG | + | chr8_2:14031570-14031589 | None:intergenic | 20.0% |
| !!! | AGACAATTTTTGAATGTATT+TGG | - | chr8_2:14031687-14031706 | Msa1235780:intron | 20.0% |
| !!! | AATTTTTGAATGTATTTGGA+TGG | - | chr8_2:14031691-14031710 | Msa1235780:intron | 20.0% |
| !! | GTTCTCCAATTAAAAATAAA+TGG | + | chr8_2:14031756-14031775 | None:intergenic | 20.0% |
| !! | TAACAAATCAGAAATATAAG+GGG | + | chr8_2:14031835-14031854 | None:intergenic | 20.0% |
| !! | GTTAACAAATCAGAAATATA+AGG | + | chr8_2:14031837-14031856 | None:intergenic | 20.0% |
| ! | AAGAATTCTTTCATTCAAAC+GGG | + | chr8_2:14029767-14029786 | None:intergenic | 25.0% |
| !! | TGATCTTAATTTTCATGTGA+AGG | - | chr8_2:14029938-14029957 | Msa1235780:intron | 25.0% |
| !!! | GGAAAATGTTAAGTATTGAA+GGG | + | chr8_2:14030021-14030040 | None:intergenic | 25.0% |
| !!! | TGGAAAATGTTAAGTATTGA+AGG | + | chr8_2:14030022-14030041 | None:intergenic | 25.0% |
| ! | CAAAAAGACTGGATTAATTA+AGG | - | chr8_2:14030134-14030153 | Msa1235780:intron | 25.0% |
| ! | TAACTATTCAGAAAAAAGCA+TGG | + | chr8_2:14030436-14030455 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAGTAAACTAG+AGG | + | chr8_2:14030649-14030668 | None:intergenic | 25.0% |
| ! | AATAAGCTTAAAACAGCTTA+TGG | + | chr8_2:14031085-14031104 | None:intergenic | 25.0% |
| !! | TAAGCTATCCTGTATATTTT+AGG | + | chr8_2:14031110-14031129 | None:intergenic | 25.0% |
| ! | GTGAAAGAATTTATCATCTA+TGG | - | chr8_2:14031464-14031483 | Msa1235780:intron | 25.0% |
| !! | ATGATATTTTGTCTCTGATT+TGG | - | chr8_2:14031574-14031593 | Msa1235780:intron | 25.0% |
| !! | ATTTGTTAACCAAAATCTTG+TGG | - | chr8_2:14031847-14031866 | Msa1235780:CDS | 25.0% |
| !! | ATATTAATGCCACAAGATTT+TGG | + | chr8_2:14031859-14031878 | None:intergenic | 25.0% |
| ! | AAGAATTCTTTCATTCAAAC+GGG | + | chr8_2:14029767-14029786 | None:intergenic | 25.0% |
| !! | TGATCTTAATTTTCATGTGA+AGG | - | chr8_2:14029938-14029957 | Msa1235780:intron | 25.0% |
| !!! | GGAAAATGTTAAGTATTGAA+GGG | + | chr8_2:14030021-14030040 | None:intergenic | 25.0% |
| !!! | TGGAAAATGTTAAGTATTGA+AGG | + | chr8_2:14030022-14030041 | None:intergenic | 25.0% |
| ! | CAAAAAGACTGGATTAATTA+AGG | - | chr8_2:14030134-14030153 | Msa1235780:intron | 25.0% |
| ! | TAACTATTCAGAAAAAAGCA+TGG | + | chr8_2:14030436-14030455 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAGTAAACTAG+AGG | + | chr8_2:14030649-14030668 | None:intergenic | 25.0% |
| ! | AATAAGCTTAAAACAGCTTA+TGG | + | chr8_2:14031085-14031104 | None:intergenic | 25.0% |
| !! | TAAGCTATCCTGTATATTTT+AGG | + | chr8_2:14031110-14031129 | None:intergenic | 25.0% |
| ! | GTGAAAGAATTTATCATCTA+TGG | - | chr8_2:14031464-14031483 | Msa1235780:intron | 25.0% |
| !! | ATGATATTTTGTCTCTGATT+TGG | - | chr8_2:14031574-14031593 | Msa1235780:intron | 25.0% |
| !! | ATTTGTTAACCAAAATCTTG+TGG | - | chr8_2:14031847-14031866 | Msa1235780:CDS | 25.0% |
| !! | ATATTAATGCCACAAGATTT+TGG | + | chr8_2:14031859-14031878 | None:intergenic | 25.0% |
| AGAATTCTTTCATTCAAACG+GGG | + | chr8_2:14029766-14029785 | None:intergenic | 30.0% | |
| GAATTCTTTCATCTTTGTCA+AGG | - | chr8_2:14029779-14029798 | Msa1235780:three_prime_UTR | 30.0% | |
| ATGCACAAATCAAGCTAAAT+AGG | + | chr8_2:14029875-14029894 | None:intergenic | 30.0% | |
| TATGAACTTGACAAAAAGAC+TGG | - | chr8_2:14030123-14030142 | Msa1235780:intron | 30.0% | |
| GTTGTTTATCCTCATAACTA+TGG | - | chr8_2:14030267-14030286 | Msa1235780:intron | 30.0% | |
| TTCTGAATTACTTATATGGC+AGG | - | chr8_2:14030512-14030531 | Msa1235780:intron | 30.0% | |
| AGAAATACCTGATCAATCAT+AGG | + | chr8_2:14030588-14030607 | None:intergenic | 30.0% | |
| AGTTATTGTCATACTTACAC+AGG | - | chr8_2:14030668-14030687 | Msa1235780:intron | 30.0% | |
| GTTATTGTCATACTTACACA+GGG | - | chr8_2:14030669-14030688 | Msa1235780:intron | 30.0% | |
| TTATTGTCATACTTACACAG+GGG | - | chr8_2:14030670-14030689 | Msa1235780:intron | 30.0% | |
| ATGTTGCATAACAAGATCAT+TGG | - | chr8_2:14030839-14030858 | Msa1235780:intron | 30.0% | |
| ! | GGACATTTTATGAGTTGTTT+CGG | + | chr8_2:14031064-14031083 | None:intergenic | 30.0% |
| CAAAAGGACAAAGATATGTT+TGG | + | chr8_2:14031262-14031281 | None:intergenic | 30.0% | |
| TGTATACTTACATTGAGTGT+TGG | + | chr8_2:14031386-14031405 | None:intergenic | 30.0% | |
| AGAATTCTTTCATTCAAACG+GGG | + | chr8_2:14029766-14029785 | None:intergenic | 30.0% | |
| GAATTCTTTCATCTTTGTCA+AGG | - | chr8_2:14029779-14029798 | Msa1235780:three_prime_UTR | 30.0% | |
| ATGCACAAATCAAGCTAAAT+AGG | + | chr8_2:14029875-14029894 | None:intergenic | 30.0% | |
| TATGAACTTGACAAAAAGAC+TGG | - | chr8_2:14030123-14030142 | Msa1235780:intron | 30.0% | |
| GTTGTTTATCCTCATAACTA+TGG | - | chr8_2:14030267-14030286 | Msa1235780:intron | 30.0% | |
| TTCTGAATTACTTATATGGC+AGG | - | chr8_2:14030512-14030531 | Msa1235780:intron | 30.0% | |
| AGAAATACCTGATCAATCAT+AGG | + | chr8_2:14030588-14030607 | None:intergenic | 30.0% | |
| AGTTATTGTCATACTTACAC+AGG | - | chr8_2:14030668-14030687 | Msa1235780:intron | 30.0% | |
| GTTATTGTCATACTTACACA+GGG | - | chr8_2:14030669-14030688 | Msa1235780:intron | 30.0% | |
| TTATTGTCATACTTACACAG+GGG | - | chr8_2:14030670-14030689 | Msa1235780:intron | 30.0% | |
| ATGTTGCATAACAAGATCAT+TGG | - | chr8_2:14030839-14030858 | Msa1235780:intron | 30.0% | |
| ! | GGACATTTTATGAGTTGTTT+CGG | + | chr8_2:14031064-14031083 | None:intergenic | 30.0% |
| CAAAAGGACAAAGATATGTT+TGG | + | chr8_2:14031262-14031281 | None:intergenic | 30.0% | |
| TGTATACTTACATTGAGTGT+TGG | + | chr8_2:14031386-14031405 | None:intergenic | 30.0% | |
| CAATTTCAAGATCATGCCAA+GGG | + | chr8_2:14029822-14029841 | None:intergenic | 35.0% | |
| ! | TAATTTTCATGTGAAGGTCC+TGG | - | chr8_2:14029944-14029963 | Msa1235780:intron | 35.0% |
| !! | TTGAAAATATTTGGTGCACC+AGG | + | chr8_2:14029965-14029984 | None:intergenic | 35.0% |
| ! | AATGATTAGTTGCTACATGC+AGG | - | chr8_2:14030068-14030087 | Msa1235780:intron | 35.0% |
| CTTTAATGCTTCCAATGTTC+AGG | - | chr8_2:14030221-14030240 | Msa1235780:intron | 35.0% | |
| GGGATAAAACCATAGTTATG+AGG | + | chr8_2:14030279-14030298 | None:intergenic | 35.0% | |
| AATCATAGGCATTAGTCCAA+TGG | + | chr8_2:14030574-14030593 | None:intergenic | 35.0% | |
| ACTAATGCCTATGATTGATC+AGG | - | chr8_2:14030578-14030597 | Msa1235780:intron | 35.0% | |
| TATTGTCATACTTACACAGG+GGG | - | chr8_2:14030671-14030690 | Msa1235780:intron | 35.0% | |
| GAAGGATGATAAAATCATCG+CGG | - | chr8_2:14030695-14030714 | Msa1235780:intron | 35.0% | |
| TCAGTATAGTGCTTATACTC+CGG | + | chr8_2:14030735-14030754 | None:intergenic | 35.0% | |
| !! | AGAAGCGTTTAATCTCCATT+AGG | + | chr8_2:14030782-14030801 | None:intergenic | 35.0% |
| ATAGGCACTTAATGTGTGTT+TGG | + | chr8_2:14030976-14030995 | None:intergenic | 35.0% | |
| ACACACATTAAGTGCCTATT+TGG | - | chr8_2:14030977-14030996 | Msa1235780:CDS | 35.0% | |
| CCAAAAAAGTCGATCCAAAT+AGG | + | chr8_2:14030994-14031013 | None:intergenic | 35.0% | |
| !!! | CCTATTTGGATCGACTTTTT+TGG | - | chr8_2:14030991-14031010 | Msa1235780:CDS | 35.0% |
| TAAGCATTTGTGAGACAGTT+TGG | - | chr8_2:14031029-14031048 | Msa1235780:intron | 35.0% | |
| AAGGACAAAGATATGTTTGG+AGG | + | chr8_2:14031259-14031278 | None:intergenic | 35.0% | |
| AGACAAGAAGAATGAGAACA+AGG | - | chr8_2:14031311-14031330 | Msa1235780:intron | 35.0% | |
| !! | TACTTACATTGAGTGTTGGA+TGG | + | chr8_2:14031382-14031401 | None:intergenic | 35.0% |
| !!! | TTTTGTCTCTGATTTGGTGT+AGG | - | chr8_2:14031580-14031599 | Msa1235780:intron | 35.0% |
| !! | TTTGTCTCTGATTTGGTGTA+GGG | - | chr8_2:14031581-14031600 | Msa1235780:intron | 35.0% |
| AGTATATTCTGCATACCTTG+AGG | - | chr8_2:14031616-14031635 | Msa1235780:intron | 35.0% | |
| TATTCTTGTCTATCTCCTCA+AGG | + | chr8_2:14031634-14031653 | None:intergenic | 35.0% | |
| CAATTTCAAGATCATGCCAA+GGG | + | chr8_2:14029822-14029841 | None:intergenic | 35.0% | |
| ! | TAATTTTCATGTGAAGGTCC+TGG | - | chr8_2:14029944-14029963 | Msa1235780:intron | 35.0% |
| !! | TTGAAAATATTTGGTGCACC+AGG | + | chr8_2:14029965-14029984 | None:intergenic | 35.0% |
| ! | AATGATTAGTTGCTACATGC+AGG | - | chr8_2:14030068-14030087 | Msa1235780:intron | 35.0% |
| CTTTAATGCTTCCAATGTTC+AGG | - | chr8_2:14030221-14030240 | Msa1235780:intron | 35.0% | |
| GGGATAAAACCATAGTTATG+AGG | + | chr8_2:14030279-14030298 | None:intergenic | 35.0% | |
| AATCATAGGCATTAGTCCAA+TGG | + | chr8_2:14030574-14030593 | None:intergenic | 35.0% | |
| ACTAATGCCTATGATTGATC+AGG | - | chr8_2:14030578-14030597 | Msa1235780:intron | 35.0% | |
| TATTGTCATACTTACACAGG+GGG | - | chr8_2:14030671-14030690 | Msa1235780:intron | 35.0% | |
| GAAGGATGATAAAATCATCG+CGG | - | chr8_2:14030695-14030714 | Msa1235780:intron | 35.0% | |
| TCAGTATAGTGCTTATACTC+CGG | + | chr8_2:14030735-14030754 | None:intergenic | 35.0% | |
| !! | AGAAGCGTTTAATCTCCATT+AGG | + | chr8_2:14030782-14030801 | None:intergenic | 35.0% |
| ATAGGCACTTAATGTGTGTT+TGG | + | chr8_2:14030976-14030995 | None:intergenic | 35.0% | |
| ACACACATTAAGTGCCTATT+TGG | - | chr8_2:14030977-14030996 | Msa1235780:CDS | 35.0% | |
| CCAAAAAAGTCGATCCAAAT+AGG | + | chr8_2:14030994-14031013 | None:intergenic | 35.0% | |
| !!! | CCTATTTGGATCGACTTTTT+TGG | - | chr8_2:14030991-14031010 | Msa1235780:CDS | 35.0% |
| TAAGCATTTGTGAGACAGTT+TGG | - | chr8_2:14031029-14031048 | Msa1235780:intron | 35.0% | |
| AAGGACAAAGATATGTTTGG+AGG | + | chr8_2:14031259-14031278 | None:intergenic | 35.0% | |
| AGACAAGAAGAATGAGAACA+AGG | - | chr8_2:14031311-14031330 | Msa1235780:intron | 35.0% | |
| !! | TACTTACATTGAGTGTTGGA+TGG | + | chr8_2:14031382-14031401 | None:intergenic | 35.0% |
| !!! | TTTTGTCTCTGATTTGGTGT+AGG | - | chr8_2:14031580-14031599 | Msa1235780:intron | 35.0% |
| !! | TTTGTCTCTGATTTGGTGTA+GGG | - | chr8_2:14031581-14031600 | Msa1235780:intron | 35.0% |
| AGTATATTCTGCATACCTTG+AGG | - | chr8_2:14031616-14031635 | Msa1235780:intron | 35.0% | |
| TATTCTTGTCTATCTCCTCA+AGG | + | chr8_2:14031634-14031653 | None:intergenic | 35.0% | |
| TTTCATTCAAACGGGGAGTT+GGG | + | chr8_2:14029759-14029778 | None:intergenic | 40.0% | |
| TTTGTCAAGGAGATCAGTTG+CGG | - | chr8_2:14029792-14029811 | Msa1235780:three_prime_UTR | 40.0% | |
| CCAATTTCAAGATCATGCCA+AGG | + | chr8_2:14029823-14029842 | None:intergenic | 40.0% | |
| CCTTGGCATGATCTTGAAAT+TGG | - | chr8_2:14029820-14029839 | Msa1235780:three_prime_UTR | 40.0% | |
| CAGGTTGTAGAGATCACTAA+GGG | - | chr8_2:14030087-14030106 | Msa1235780:intron | 40.0% | |
| AGAGATCACTAAGGGAAGTA+AGG | - | chr8_2:14030095-14030114 | Msa1235780:intron | 40.0% | |
| !! | CTTCCAATGTTCAGGTTGAT+CGG | - | chr8_2:14030229-14030248 | Msa1235780:intron | 40.0% |
| AATCCGATCAACCTGAACAT+TGG | + | chr8_2:14030235-14030254 | None:intergenic | 40.0% | |
| TGTCTTCACATAGAGTTCGA+GGG | + | chr8_2:14030299-14030318 | None:intergenic | 40.0% | |
| TTGTCTTCACATAGAGTTCG+AGG | + | chr8_2:14030300-14030319 | None:intergenic | 40.0% | |
| ATAGGTCACAACTCACAACA+AGG | + | chr8_2:14030365-14030384 | None:intergenic | 40.0% | |
| CATAACAATAGTTCCGGTTC+TGG | - | chr8_2:14030396-14030415 | Msa1235780:intron | 40.0% | |
| TCGATAATTCTGTCCAGAAC+CGG | + | chr8_2:14030412-14030431 | None:intergenic | 40.0% | |
| TTAATCTCCATTAGGCGATG+AGG | + | chr8_2:14030774-14030793 | None:intergenic | 40.0% | |
| CAAGAAGAATGAGAACAAGG+AGG | - | chr8_2:14031314-14031333 | Msa1235780:intron | 40.0% | |
| TTTCATTCAAACGGGGAGTT+GGG | + | chr8_2:14029759-14029778 | None:intergenic | 40.0% | |
| TTTGTCAAGGAGATCAGTTG+CGG | - | chr8_2:14029792-14029811 | Msa1235780:three_prime_UTR | 40.0% | |
| CCAATTTCAAGATCATGCCA+AGG | + | chr8_2:14029823-14029842 | None:intergenic | 40.0% | |
| CCTTGGCATGATCTTGAAAT+TGG | - | chr8_2:14029820-14029839 | Msa1235780:three_prime_UTR | 40.0% | |
| CAGGTTGTAGAGATCACTAA+GGG | - | chr8_2:14030087-14030106 | Msa1235780:intron | 40.0% | |
| AGAGATCACTAAGGGAAGTA+AGG | - | chr8_2:14030095-14030114 | Msa1235780:intron | 40.0% | |
| !! | CTTCCAATGTTCAGGTTGAT+CGG | - | chr8_2:14030229-14030248 | Msa1235780:intron | 40.0% |
| AATCCGATCAACCTGAACAT+TGG | + | chr8_2:14030235-14030254 | None:intergenic | 40.0% | |
| TGTCTTCACATAGAGTTCGA+GGG | + | chr8_2:14030299-14030318 | None:intergenic | 40.0% | |
| TTGTCTTCACATAGAGTTCG+AGG | + | chr8_2:14030300-14030319 | None:intergenic | 40.0% | |
| ATAGGTCACAACTCACAACA+AGG | + | chr8_2:14030365-14030384 | None:intergenic | 40.0% | |
| CATAACAATAGTTCCGGTTC+TGG | - | chr8_2:14030396-14030415 | Msa1235780:intron | 40.0% | |
| TCGATAATTCTGTCCAGAAC+CGG | + | chr8_2:14030412-14030431 | None:intergenic | 40.0% | |
| TTAATCTCCATTAGGCGATG+AGG | + | chr8_2:14030774-14030793 | None:intergenic | 40.0% | |
| CAAGAAGAATGAGAACAAGG+AGG | - | chr8_2:14031314-14031333 | Msa1235780:intron | 40.0% | |
| CTTTCATTCAAACGGGGAGT+TGG | + | chr8_2:14029760-14029779 | None:intergenic | 45.0% | |
| GCAGGTTGTAGAGATCACTA+AGG | - | chr8_2:14030086-14030105 | Msa1235780:intron | 45.0% | |
| CAATGATCCACTCGATGTCT+TGG | - | chr8_2:14030317-14030336 | Msa1235780:intron | 45.0% | |
| ATGAGAACCAAGACATCGAG+TGG | + | chr8_2:14030327-14030346 | None:intergenic | 45.0% | |
| AGGAAACAACCAGGAAGAAC+AGG | + | chr8_2:14030540-14030559 | None:intergenic | 45.0% | |
| ACTTCAACCTCATCGCCTAA+TGG | - | chr8_2:14030764-14030783 | Msa1235780:CDS | 45.0% | |
| ATGGCATCAACAGCAGTAGA+TGG | + | chr8_2:14031363-14031382 | None:intergenic | 45.0% | |
| CTTTCATTCAAACGGGGAGT+TGG | + | chr8_2:14029760-14029779 | None:intergenic | 45.0% | |
| GCAGGTTGTAGAGATCACTA+AGG | - | chr8_2:14030086-14030105 | Msa1235780:intron | 45.0% | |
| CAATGATCCACTCGATGTCT+TGG | - | chr8_2:14030317-14030336 | Msa1235780:intron | 45.0% | |
| ATGAGAACCAAGACATCGAG+TGG | + | chr8_2:14030327-14030346 | None:intergenic | 45.0% | |
| AGGAAACAACCAGGAAGAAC+AGG | + | chr8_2:14030540-14030559 | None:intergenic | 45.0% | |
| ACTTCAACCTCATCGCCTAA+TGG | - | chr8_2:14030764-14030783 | Msa1235780:CDS | 45.0% | |
| ATGGCATCAACAGCAGTAGA+TGG | + | chr8_2:14031363-14031382 | None:intergenic | 45.0% | |
| !!! | ATTTTCTATTTTTAAATTTT+TGG | - | chr8_2:14030914-14030933 | Msa1235780:intron | 5.0% |
| !!! | ATTTTCTATTTTTAAATTTT+TGG | - | chr8_2:14030914-14030933 | Msa1235780:intron | 5.0% |
| GCAGAAACAGCATAACGCAG+TGG | + | chr8_2:14030042-14030061 | None:intergenic | 50.0% | |
| ! | CGATGTCTTGGTTCTCATGC+AGG | - | chr8_2:14030329-14030348 | Msa1235780:intron | 50.0% |
| CATACTTACACAGGGGGAGA+AGG | - | chr8_2:14030677-14030696 | Msa1235780:intron | 50.0% | |
| GCATCAACAGCAGTAGATGG+TGG | + | chr8_2:14031360-14031379 | None:intergenic | 50.0% | |
| GCAGAAACAGCATAACGCAG+TGG | + | chr8_2:14030042-14030061 | None:intergenic | 50.0% | |
| ! | CGATGTCTTGGTTCTCATGC+AGG | - | chr8_2:14030329-14030348 | Msa1235780:intron | 50.0% |
| CATACTTACACAGGGGGAGA+AGG | - | chr8_2:14030677-14030696 | Msa1235780:intron | 50.0% | |
| GCATCAACAGCAGTAGATGG+TGG | + | chr8_2:14031360-14031379 | None:intergenic | 50.0% | |
| ATTCAAACGGGGAGTTGGGC+GGG | + | chr8_2:14029755-14029774 | None:intergenic | 55.0% | |
| CATTCAAACGGGGAGTTGGG+CGG | + | chr8_2:14029756-14029775 | None:intergenic | 55.0% | |
| CTTGCTCGCAGGAAACAACC+AGG | + | chr8_2:14030549-14030568 | None:intergenic | 55.0% | |
| TTCCTGCGAGCAAGAGCCAT+TGG | - | chr8_2:14030555-14030574 | Msa1235780:intron | 55.0% | |
| ATTCAAACGGGGAGTTGGGC+GGG | + | chr8_2:14029755-14029774 | None:intergenic | 55.0% | |
| CATTCAAACGGGGAGTTGGG+CGG | + | chr8_2:14029756-14029775 | None:intergenic | 55.0% | |
| CTTGCTCGCAGGAAACAACC+AGG | + | chr8_2:14030549-14030568 | None:intergenic | 55.0% | |
| TTCCTGCGAGCAAGAGCCAT+TGG | - | chr8_2:14030555-14030574 | Msa1235780:intron | 55.0% | |
| GATCAGTTGCGGCTCACCCT+TGG | - | chr8_2:14029803-14029822 | Msa1235780:three_prime_UTR | 60.0% | |
| TGGCAGGAGCCTGTTCTTCC+TGG | - | chr8_2:14030528-14030547 | Msa1235780:intron | 60.0% | |
| GTCCAATGGCTCTTGCTCGC+AGG | + | chr8_2:14030560-14030579 | None:intergenic | 60.0% | |
| ! | CGCGGTATGCGCTGATGATC+CGG | - | chr8_2:14030713-14030732 | Msa1235780:intron | 60.0% |
| GATCAGTTGCGGCTCACCCT+TGG | - | chr8_2:14029803-14029822 | Msa1235780:three_prime_UTR | 60.0% | |
| TGGCAGGAGCCTGTTCTTCC+TGG | - | chr8_2:14030528-14030547 | Msa1235780:intron | 60.0% | |
| GTCCAATGGCTCTTGCTCGC+AGG | + | chr8_2:14030560-14030579 | None:intergenic | 60.0% | |
| ! | CGCGGTATGCGCTGATGATC+CGG | - | chr8_2:14030713-14030732 | Msa1235780:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 14029655 | 14031892 | 14029655 | ID=Msa1235780;Name=Msa1235780 |
| chr8_2 | mRNA | 14029655 | 14031892 | 14029655 | ID=Msa1235780-mRNA-1;Parent=Msa1235780;Name=Msa1235780-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|1|0.87|1|1|1|8|248|233 |
| chr8_2 | exon | 14029655 | 14029945 | 14029655 | ID=Msa1235780-mRNA-1:exon:5396;Parent=Msa1235780-mRNA-1 |
| chr8_2 | exon | 14030153 | 14030234 | 14030153 | ID=Msa1235780-mRNA-1:exon:5395;Parent=Msa1235780-mRNA-1 |
| chr8_2 | exon | 14030737 | 14030857 | 14030737 | ID=Msa1235780-mRNA-1:exon:5394;Parent=Msa1235780-mRNA-1 |
| chr8_2 | exon | 14030948 | 14031013 | 14030948 | ID=Msa1235780-mRNA-1:exon:5393;Parent=Msa1235780-mRNA-1 |
| chr8_2 | exon | 14031197 | 14031304 | 14031197 | ID=Msa1235780-mRNA-1:exon:5392;Parent=Msa1235780-mRNA-1 |
| chr8_2 | exon | 14031392 | 14031457 | 14031392 | ID=Msa1235780-mRNA-1:exon:5391;Parent=Msa1235780-mRNA-1 |
| chr8_2 | exon | 14031559 | 14031587 | 14031559 | ID=Msa1235780-mRNA-1:exon:5390;Parent=Msa1235780-mRNA-1 |
| chr8_2 | exon | 14031706 | 14031892 | 14031706 | ID=Msa1235780-mRNA-1:exon:5389;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14031706 | 14031892 | 14031706 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14031559 | 14031587 | 14031559 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14031392 | 14031457 | 14031392 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14031197 | 14031304 | 14031197 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14030948 | 14031013 | 14030948 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14030737 | 14030857 | 14030737 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14030153 | 14030234 | 14030153 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | CDS | 14029903 | 14029945 | 14029903 | ID=Msa1235780-mRNA-1:cds;Parent=Msa1235780-mRNA-1 |
| chr8_2 | three_prime_UTR | 14029655 | 14029902 | 14029655 | ID=Msa1235780-mRNA-1:three_prime_utr;Parent=Msa1235780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
