Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175600 | sp|Q93V56|IPYR1_ARATH | 88.679 | 212 | 24 | 0 | 1 | 212 | 1 | 212 | 1.42e-140 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175600 | A0A072TMB0 | 99.528 | 212 | 1 | 0 | 1 | 212 | 46 | 257 | 1.17e-156 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1175600 | -0.810060 | 1.390489e-50 | -8.615850e-47 |
| Msa0020630 | Msa1175600 | -0.802484 | 5.490187e-49 | -8.615850e-47 |
| Msa0049400 | Msa1175600 | 0.812613 | 3.882121e-51 | -8.615850e-47 |
| Msa0084630 | Msa1175600 | -0.807794 | 4.247165e-50 | -8.615850e-47 |
| Msa0084680 | Msa1175600 | -0.805943 | 1.045649e-49 | -8.615850e-47 |
| Msa0092660 | Msa1175600 | -0.803984 | 2.684769e-49 | -8.615850e-47 |
| Msa0607600 | Msa1175600 | 0.801180 | 1.017027e-48 | -8.615850e-47 |
| Msa0619330 | Msa1175600 | -0.805304 | 1.424039e-49 | -8.615850e-47 |
| Msa0642650 | Msa1175600 | -0.806666 | 7.364777e-50 | -8.615850e-47 |
| Msa0650650 | Msa1175600 | -0.821327 | 4.283365e-53 | -8.615850e-47 |
| Msa0650740 | Msa1175600 | -0.814560 | 1.448032e-51 | -8.615850e-47 |
| Msa0655660 | Msa1175600 | 0.817136 | 3.856765e-52 | -8.615850e-47 |
| Msa0681890 | Msa1175600 | -0.814519 | 1.478017e-51 | -8.615850e-47 |
| Msa0694690 | Msa1175600 | 0.802871 | 4.566951e-49 | -8.615850e-47 |
| Msa0792790 | Msa1175600 | 0.817660 | 2.939367e-52 | -8.615850e-47 |
| Msa0796430 | Msa1175600 | 0.811773 | 5.920266e-51 | -8.615850e-47 |
| Msa0834270 | Msa1175600 | 0.815167 | 1.061846e-51 | -8.615850e-47 |
| Msa0139720 | Msa1175600 | 0.823970 | 1.039905e-53 | -8.615850e-47 |
| Msa0141110 | Msa1175600 | 0.804114 | 2.523062e-49 | -8.615850e-47 |
| Msa0168640 | Msa1175600 | 0.819098 | 1.388176e-52 | -8.615850e-47 |
| Msa0197750 | Msa1175600 | 0.815268 | 1.008650e-51 | -8.615850e-47 |
| Msa0222070 | Msa1175600 | -0.809882 | 1.518599e-50 | -8.615850e-47 |
| Msa0222120 | Msa1175600 | -0.813318 | 2.719357e-51 | -8.615850e-47 |
| Msa0374860 | Msa1175600 | 0.803452 | 3.463318e-49 | -8.615850e-47 |
| Msa0375080 | Msa1175600 | 0.817113 | 3.902286e-52 | -8.615850e-47 |
| Msa0389840 | Msa1175600 | 0.863288 | 2.769562e-64 | -8.615850e-47 |
| Msa0981010 | Msa1175600 | -0.808022 | 3.798661e-50 | -8.615850e-47 |
| Msa1002040 | Msa1175600 | -0.827602 | 1.429276e-54 | -8.615850e-47 |
| Msa1030570 | Msa1175600 | 0.809904 | 1.502572e-50 | -8.615850e-47 |
| Msa1037060 | Msa1175600 | 0.806687 | 7.287670e-50 | -8.615850e-47 |
| Msa1038320 | Msa1175600 | -0.803048 | 4.198106e-49 | -8.615850e-47 |
| Msa0263620 | Msa1175600 | -0.810863 | 9.330477e-51 | -8.615850e-47 |
| Msa0277280 | Msa1175600 | 0.810646 | 1.039411e-50 | -8.615850e-47 |
| Msa0288240 | Msa1175600 | -0.804841 | 1.779995e-49 | -8.615850e-47 |
| Msa0301180 | Msa1175600 | -0.815288 | 9.980591e-52 | -8.615850e-47 |
| Msa0320540 | Msa1175600 | -0.803868 | 2.838337e-49 | -8.615850e-47 |
| Msa1132560 | Msa1175600 | 0.820318 | 7.307422e-53 | -8.615850e-47 |
| Msa1149760 | Msa1175600 | -0.804159 | 2.469598e-49 | -8.615850e-47 |
| Msa1164800 | Msa1175600 | 0.808202 | 3.476940e-50 | -8.615850e-47 |
| Msa1175600 | Msa1183390 | -0.800657 | 1.300462e-48 | -8.615850e-47 |
| Msa1175600 | Msa1222030 | 0.819054 | 1.420604e-52 | -8.615850e-47 |
| Msa1175600 | Msa1235780 | 0.810896 | 9.176850e-51 | -8.615850e-47 |
| Msa1175600 | Msa1236030 | 0.814375 | 1.591072e-51 | -8.615850e-47 |
| Msa1175600 | Msa1265960 | -0.808230 | 3.430398e-50 | -8.615850e-47 |
| Msa1175600 | Msa1405770 | -0.819278 | 1.263200e-52 | -8.615850e-47 |
| Msa1175600 | Msa1418190 | 0.820579 | 6.365961e-53 | -8.615850e-47 |
| Msa1175600 | Msa1431000 | -0.806396 | 8.394070e-50 | -8.615850e-47 |
| Msa0524120 | Msa1175600 | -0.817040 | 4.052606e-52 | -8.615850e-47 |
| Msa0546380 | Msa1175600 | -0.814821 | 1.267151e-51 | -8.615850e-47 |
| Msa0546740 | Msa1175600 | -0.823206 | 1.569273e-53 | -8.615850e-47 |
| Msa0575990 | Msa1175600 | 0.838050 | 3.619464e-57 | -8.615850e-47 |
| Msa0576100 | Msa1175600 | 0.837126 | 6.247922e-57 | -8.615850e-47 |
| Msa0579340 | Msa1175600 | -0.818238 | 2.175891e-52 | -8.615850e-47 |
| Msa0591830 | Msa1175600 | 0.804270 | 2.341109e-49 | -8.615850e-47 |
| Msa0922540 | Msa1175600 | -0.804147 | 2.483788e-49 | -8.615850e-47 |
| Msa0925160 | Msa1175600 | -0.804967 | 1.675053e-49 | -8.615850e-47 |
| Msa0955260 | Msa1175600 | -0.809721 | 1.645291e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175600 | MtrunA17_Chr8g0345781 | 99.528 | 212 | 1 | 0 | 1 | 212 | 6 | 217 | 7.08e-160 | 440 |
| Msa1175600 | MtrunA17_Chr1g0182331 | 85.279 | 197 | 29 | 0 | 16 | 212 | 20 | 216 | 4.20e-128 | 360 |
| Msa1175600 | MtrunA17_Chr5g0404551 | 77.725 | 211 | 47 | 0 | 2 | 212 | 3 | 213 | 3.07e-127 | 357 |
| Msa1175600 | MtrunA17_Chr8g0372981 | 80.788 | 203 | 38 | 1 | 11 | 212 | 24 | 226 | 5.16e-123 | 347 |
| Msa1175600 | MtrunA17_Chr7g0276441 | 93.939 | 165 | 10 | 0 | 48 | 212 | 29 | 193 | 3.92e-115 | 326 |
| Msa1175600 | MtrunA17_Chr1g0200691 | 66.949 | 236 | 38 | 2 | 4 | 199 | 50 | 285 | 4.22e-110 | 317 |
| Msa1175600 | MtrunA17_Chr2g0280151 | 29.412 | 204 | 113 | 7 | 35 | 210 | 82 | 282 | 1.28e-16 | 76.6 |
| Msa1175600 | MtrunA17_Chr1g0210921 | 45.882 | 85 | 41 | 4 | 131 | 210 | 12 | 96 | 3.65e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1175600 | AT1G01050.1 | 88.679 | 212 | 24 | 0 | 1 | 212 | 1 | 212 | 1.45e-141 | 394 |
| Msa1175600 | AT1G01050.2 | 88.679 | 212 | 24 | 0 | 1 | 212 | 1 | 212 | 1.45e-141 | 394 |
| Msa1175600 | AT2G46860.1 | 87.037 | 216 | 24 | 1 | 1 | 212 | 1 | 216 | 2.06e-139 | 389 |
| Msa1175600 | AT4G01480.1 | 88.945 | 199 | 22 | 0 | 14 | 212 | 18 | 216 | 3.24e-134 | 375 |
| Msa1175600 | AT4G01480.2 | 88.945 | 199 | 22 | 0 | 14 | 212 | 18 | 216 | 3.24e-134 | 375 |
| Msa1175600 | AT3G53620.1 | 83.756 | 197 | 32 | 0 | 16 | 212 | 20 | 216 | 1.49e-126 | 356 |
| Msa1175600 | AT2G18230.1 | 75.879 | 199 | 48 | 0 | 14 | 212 | 20 | 218 | 1.09e-114 | 326 |
| Msa1175600 | AT5G09650.1 | 32.124 | 193 | 107 | 6 | 8 | 178 | 66 | 256 | 3.53e-18 | 81.3 |
Find 55 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACACAATTGAAAATATT+TGG | 0.130753 | 8_1:+7073751 | None:intergenic |
| TTTATATTTCATGTAAAATT+TGG | 0.168389 | 8_1:-7071853 | Msa1175600:three_prime_UTR |
| ATATTAATGCCACAAGATTT+TGG | 0.189369 | 8_1:+7071787 | None:intergenic |
| CCTTGGCATGATCTTGAAAT+TGG | 0.231220 | 8_1:-7073902 | Msa1175600:intron |
| AACAACAAATCAGAAATATA+AGG | 0.290215 | 8_1:+7071812 | None:intergenic |
| TGGCAGGAGCCTGTTCTTCC+TGG | 0.300485 | 8_1:-7073193 | Msa1175600:intron |
| AAAGAATTCTTTCATTCAAA+CGG | 0.380614 | 8_1:+7073957 | None:intergenic |
| AAGAATTCTTTCATTCAAAC+GGG | 0.388175 | 8_1:+7073958 | None:intergenic |
| CGCGGTATGCGCTGATGATC+CGG | 0.389151 | 8_1:-7073008 | Msa1175600:CDS |
| ACAACAAATCAGAAATATAA+GGG | 0.394570 | 8_1:+7071813 | None:intergenic |
| CATTCAAACGGGGAGTTGGG+CGG | 0.410809 | 8_1:+7073969 | None:intergenic |
| CTTTCATTCAAACGGGGAGT+TGG | 0.415515 | 8_1:+7073965 | None:intergenic |
| TTTCATTCAAACGGGGAGTT+GGG | 0.421103 | 8_1:+7073966 | None:intergenic |
| ACTTCAACCTCATCGCCTAA+TGG | 0.427291 | 8_1:-7072957 | Msa1175600:CDS |
| ATTCAAACGGGGAGTTGGGC+GGG | 0.431213 | 8_1:+7073970 | None:intergenic |
| AGAAATACCTGATCAATCAT+AGG | 0.434889 | 8_1:+7073136 | None:intergenic |
| AGGAAACAACCAGGAAGAAC+AGG | 0.458021 | 8_1:+7073184 | None:intergenic |
| CGATGTCTTGGTTCTCATGC+AGG | 0.463888 | 8_1:-7073392 | Msa1175600:intron |
| ATATTGAGAAAAGGTGTAAA+GGG | 0.464766 | 8_1:+7074960 | None:intergenic |
| CTTCCAATGTTCAGGTTGAT+CGG | 0.464863 | 8_1:-7073492 | Msa1175600:intron |
| AGAAGCGTTTAATCTCCATT+AGG | 0.470540 | 8_1:+7072942 | None:intergenic |
| CAATGATCCACTCGATGTCT+TGG | 0.475275 | 8_1:-7073404 | Msa1175600:CDS |
| AATATTGAGAAAAGGTGTAA+AGG | 0.483210 | 8_1:+7074959 | None:intergenic |
| ACTAATGCCTATGATTGATC+AGG | 0.483555 | 8_1:-7073143 | Msa1175600:intron |
| AAACCTTGAATAACACCAAA+AGG | 0.485269 | 8_1:+7074935 | None:intergenic |
| ATGGCTTCAACAGCAGTAGA+TGG | 0.493770 | 8_1:+7072361 | None:intergenic |
| GATCAGTTGCTGCTCACCCT+TGG | 0.495829 | 8_1:-7073919 | Msa1175600:CDS |
| AGAGATCACTAAGGGAAGTA+AGG | 0.518040 | 8_1:-7073627 | Msa1175600:CDS |
| CAAAAGGAAATATTGAGAAA+AGG | 0.521969 | 8_1:+7074951 | None:intergenic |
| GGGATAAAACCGTAGTTATG+AGG | 0.523871 | 8_1:+7073445 | None:intergenic |
| GTTGTTTATCCTCATAACTA+CGG | 0.525869 | 8_1:-7073454 | Msa1175600:CDS |
| TTGTCTTCACATAGAGTTCG+AGG | 0.526790 | 8_1:+7073424 | None:intergenic |
| GTCCGATGGCTCTTGCTCGC+AGG | 0.526935 | 8_1:+7073164 | None:intergenic |
| TGTATACTTACATTGAGTGT+TGG | 0.546581 | 8_1:+7072338 | None:intergenic |
| GAATTCTTTCATCTTTGTCA+AGG | 0.554674 | 8_1:-7073943 | Msa1175600:CDS |
| TCAGTATAGTGCTTATACTC+CGG | 0.562072 | 8_1:+7072989 | None:intergenic |
| TGTTGTTAGCCAAAATCTTG+TGG | 0.563574 | 8_1:-7071796 | Msa1175600:three_prime_UTR |
| TTCCTGCGAGCAAGAGCCAT+CGG | 0.567710 | 8_1:-7073166 | Msa1175600:CDS |
| TACTTACATTGAGTGTTGGA+TGG | 0.580614 | 8_1:+7072342 | None:intergenic |
| TTGAAAATATTTGGTGCACC+AGG | 0.585149 | 8_1:+7073760 | None:intergenic |
| GCAGGTTGTAGAGATCACTA+AGG | 0.587594 | 8_1:-7073636 | Msa1175600:intron |
| CCAATTTCAAGATCATGCCA+AGG | 0.603400 | 8_1:+7073902 | None:intergenic |
| AATCATAGGCATTAGTCCGA+TGG | 0.605554 | 8_1:+7073150 | None:intergenic |
| TATTCTTGTCTATCTCCTCA+AGG | 0.605905 | 8_1:+7072016 | None:intergenic |
| CTTGCTCGCAGGAAACAACC+AGG | 0.608952 | 8_1:+7073175 | None:intergenic |
| TGTCTTCACATAGAGTTCGA+GGG | 0.623793 | 8_1:+7073425 | None:intergenic |
| TTAATCTCCATTAGGCGATG+AGG | 0.630602 | 8_1:+7072950 | None:intergenic |
| CAGGTTGTAGAGATCACTAA+GGG | 0.630832 | 8_1:-7073635 | Msa1175600:CDS |
| CAACAAATCAGAAATATAAG+GGG | 0.633716 | 8_1:+7071814 | None:intergenic |
| AGTATATTCTGCATACCTTG+AGG | 0.641114 | 8_1:-7072031 | Msa1175600:CDS |
| CAATTTCAAGATCATGCCAA+GGG | 0.655845 | 8_1:+7073903 | None:intergenic |
| ATGAGAACCAAGACATCGAG+TGG | 0.661639 | 8_1:+7073397 | None:intergenic |
| AGAATTCTTTCATTCAAACG+GGG | 0.661736 | 8_1:+7073959 | None:intergenic |
| GCTTCAACAGCAGTAGATGG+TGG | 0.680798 | 8_1:+7072364 | None:intergenic |
| GAAGGATGATAAAATCATCG+CGG | 0.762714 | 8_1:-7073026 | Msa1175600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATTTTGAAATTTTAAAA+TGG | - | chr8_1:7073191-7073210 | Msa1175600:intron | 10.0% |
| !!! | ATAAACTTTTTTTTTTTTTG+TGG | + | chr8_1:7074623-7074642 | None:intergenic | 10.0% |
| !!! | TATACCATTTATTTTTTAAT+TGG | - | chr8_1:7074843-7074862 | Msa1175600:intron | 10.0% |
| !! | TTTATATTTCATGTAAAATT+TGG | - | chr8_1:7074888-7074907 | Msa1175600:intron | 10.0% |
| !!! | CTTTTTCAATTTTATTCTAT+TGG | - | chr8_1:7071943-7071962 | Msa1175600:three_prime_UTR | 15.0% |
| !! | TAATCAAACTTGATTATTAT+TGG | + | chr8_1:7072080-7072099 | None:intergenic | 15.0% |
| !!! | GAATTTGAAATATAATCATA+AGG | - | chr8_1:7072184-7072203 | Msa1175600:intron | 15.0% |
| !! | TGTTATGATTAAAGTTTAAT+AGG | + | chr8_1:7073403-7073422 | None:intergenic | 15.0% |
| !!! | TGTATTTTTTTGTATTAAGT+TGG | - | chr8_1:7074816-7074835 | Msa1175600:intron | 15.0% |
| !! | TTCTCCAATTAAAAAATAAA+TGG | + | chr8_1:7074850-7074869 | None:intergenic | 15.0% |
| !! | GGTAAAATTAACTATATGAT+TGG | + | chr8_1:7071848-7071867 | None:intergenic | 20.0% |
| !!! | CATATAGTTAATTTTACCTT+TGG | - | chr8_1:7071850-7071869 | Msa1175600:three_prime_UTR | 20.0% |
| !! | ATATTATTACCACATATCAA+AGG | + | chr8_1:7072040-7072059 | None:intergenic | 20.0% |
| !! | GATATGTGGTAATAATATAA+AGG | - | chr8_1:7072042-7072061 | Msa1175600:CDS | 20.0% |
| !!! | GACTTTTGATGTATAAATAT+TGG | - | chr8_1:7072120-7072139 | Msa1175600:intron | 20.0% |
| !!! | TTAAACCAATTTTACTCTTA+TGG | - | chr8_1:7072655-7072674 | Msa1175600:intron | 20.0% |
| !! | AAAGAATTCTTTCATTCAAA+CGG | + | chr8_1:7072787-7072806 | None:intergenic | 20.0% |
| !! | CTTACACAATTGAAAATATT+TGG | + | chr8_1:7072993-7073012 | None:intergenic | 20.0% |
| !!! | ATAAATGAAGATCAAAGTTT+TGG | + | chr8_1:7073017-7073036 | None:intergenic | 20.0% |
| !! | AATGGACAAAAATATTAACT+TGG | - | chr8_1:7073209-7073228 | Msa1175600:intron | 20.0% |
| !! | TTTAATCATAACAATAGTTC+CGG | - | chr8_1:7073410-7073429 | Msa1175600:CDS | 20.0% |
| !! | AACATTCTGAATTACTTATA+TGG | - | chr8_1:7073528-7073547 | Msa1175600:intron | 20.0% |
| !! | TTGTTAACATGAGATAATAA+AGG | + | chr8_1:7073838-7073857 | None:intergenic | 20.0% |
| !!! | CTTATTTTCCTAAAATATAC+AGG | - | chr8_1:7074119-7074138 | Msa1175600:intron | 20.0% |
| !!! | AGAAACACTAATTTTTCAAA+AGG | + | chr8_1:7074298-7074317 | None:intergenic | 20.0% |
| !! | AGAGACAAAATATCATATTA+AGG | + | chr8_1:7074664-7074683 | None:intergenic | 20.0% |
| !!! | AGACAATTTTAGAATGTATT+TGG | - | chr8_1:7074781-7074800 | Msa1175600:intron | 20.0% |
| !! | ACAACAAATCAGAAATATAA+GGG | + | chr8_1:7074931-7074950 | None:intergenic | 20.0% |
| !! | AACAACAAATCAGAAATATA+AGG | + | chr8_1:7074932-7074951 | None:intergenic | 20.0% |
| !! | ATATTGAGAAAAGGTGTAAA+GGG | + | chr8_1:7071784-7071803 | None:intergenic | 25.0% |
| !! | AATATTGAGAAAAGGTGTAA+AGG | + | chr8_1:7071785-7071804 | None:intergenic | 25.0% |
| ! | CAAAAGGAAATATTGAGAAA+AGG | + | chr8_1:7071793-7071812 | None:intergenic | 25.0% |
| !! | CTTTTCTCAATATTTCCTTT+TGG | - | chr8_1:7071791-7071810 | Msa1175600:three_prime_UTR | 25.0% |
| !! | GTTAATTTTACCTTTGGTAT+TGG | - | chr8_1:7071856-7071875 | Msa1175600:three_prime_UTR | 25.0% |
| ! | ATACATAAATCCAATACCAA+AGG | + | chr8_1:7071869-7071888 | None:intergenic | 25.0% |
| ! | ATTATACAGTGGTTAATCAA+TGG | + | chr8_1:7071979-7071998 | None:intergenic | 25.0% |
| ! | TATCAAAGGAATCACAAAAA+TGG | + | chr8_1:7072026-7072045 | None:intergenic | 25.0% |
| ! | GTAAAAATATAGTCAAGTGT+TGG | - | chr8_1:7072162-7072181 | Msa1175600:intron | 25.0% |
| !! | TTGAATGAAGCAAATTCTTT+TGG | - | chr8_1:7072227-7072246 | Msa1175600:intron | 25.0% |
| !! | TGGTGATATATTGACTAATA+AGG | - | chr8_1:7072247-7072266 | Msa1175600:intron | 25.0% |
| !! | GGTGATATATTGACTAATAA+GGG | - | chr8_1:7072248-7072267 | Msa1175600:intron | 25.0% |
| ! | ATGATTATGATCCAATATCT+AGG | + | chr8_1:7072293-7072312 | None:intergenic | 25.0% |
| !!! | CGATTTGGTTTTTAAAACAT+TGG | - | chr8_1:7072476-7072495 | Msa1175600:intron | 25.0% |
| ! | AAGAATTCTTTCATTCAAAC+GGG | + | chr8_1:7072786-7072805 | None:intergenic | 25.0% |
| !! | TGATCTTAATTTTCATGTGA+AGG | - | chr8_1:7072957-7072976 | Msa1175600:CDS | 25.0% |
| !!! | GGAAAATGTTAAGTATTGAA+GGG | + | chr8_1:7073040-7073059 | None:intergenic | 25.0% |
| !!! | TGGAAAATGTTAAGTATTGA+AGG | + | chr8_1:7073041-7073060 | None:intergenic | 25.0% |
| ! | CAAAAAGACTGGATTAATTA+AGG | - | chr8_1:7073153-7073172 | Msa1175600:CDS | 25.0% |
| ! | TAACTATTCAGAAAAAAGCA+TGG | + | chr8_1:7073456-7073475 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAGTAAACTAG+AGG | + | chr8_1:7073669-7073688 | None:intergenic | 25.0% |
| ! | AGTTATTATCATACTTACAC+AGG | - | chr8_1:7073688-7073707 | Msa1175600:intron | 25.0% |
| ! | GTTATTATCATACTTACACA+GGG | - | chr8_1:7073689-7073708 | Msa1175600:intron | 25.0% |
| ! | TTATTATCATACTTACACAG+GGG | - | chr8_1:7073690-7073709 | Msa1175600:intron | 25.0% |
| ! | AATAAGCTTAAAACAGCTTA+TGG | + | chr8_1:7074105-7074124 | None:intergenic | 25.0% |
| !! | TAAGCTATCCTGTATATTTT+AGG | + | chr8_1:7074130-7074149 | None:intergenic | 25.0% |
| ! | GTGAAAGAATTTATCATCTA+TGG | - | chr8_1:7074484-7074503 | Msa1175600:intron | 25.0% |
| !! | CTAATGGTATATAACCTTTT+TGG | + | chr8_1:7074510-7074529 | None:intergenic | 25.0% |
| !! | AGAAAAAACACATTTGCTAA+TGG | + | chr8_1:7074526-7074545 | None:intergenic | 25.0% |
| ! | CATAATATATGCAAAGTTTG+AGG | - | chr8_1:7074582-7074601 | Msa1175600:intron | 25.0% |
| !!! | TTTTTTTTTTTGTGGTGTCT+GGG | + | chr8_1:7074615-7074634 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTGTGGTGTC+TGG | + | chr8_1:7074616-7074635 | None:intergenic | 25.0% |
| !! | ATGATATTTTGTCTCTGATT+TGG | - | chr8_1:7074668-7074687 | Msa1175600:intron | 25.0% |
| ! | CAACAAATCAGAAATATAAG+GGG | + | chr8_1:7074930-7074949 | None:intergenic | 25.0% |
| !! | ATATTAATGCCACAAGATTT+TGG | + | chr8_1:7074957-7074976 | None:intergenic | 25.0% |
| !!! | TTTCCTTTTGGTGTTATTCA+AGG | - | chr8_1:7071803-7071822 | Msa1175600:three_prime_UTR | 30.0% |
| AAACCTTGAATAACACCAAA+AGG | + | chr8_1:7071809-7071828 | None:intergenic | 30.0% | |
| TTTGTGATTCCTTTGATATG+TGG | - | chr8_1:7072028-7072047 | Msa1175600:CDS | 30.0% | |
| ! | TATTGACTAATAAGGGTCTT+TGG | - | chr8_1:7072255-7072274 | Msa1175600:intron | 30.0% |
| !!! | CAATGTTTTAACAACCGAAT+CGG | - | chr8_1:7072321-7072340 | Msa1175600:intron | 30.0% |
| AACAAAACTGTAGACAATAC+CGG | + | chr8_1:7072369-7072388 | None:intergenic | 30.0% | |
| !!! | CTACAGTTTTGTTATTTGAG+TGG | - | chr8_1:7072376-7072395 | Msa1175600:CDS | 30.0% |
| !! | TGCATTGGTTCTAAATATCA+AGG | + | chr8_1:7072514-7072533 | None:intergenic | 30.0% |
| !! | TAGTACATAGTTCTAAACTG+TGG | + | chr8_1:7072594-7072613 | None:intergenic | 30.0% |
| ! | ACAGTTTAGAACTATGTACT+AGG | - | chr8_1:7072593-7072612 | Msa1175600:intron | 30.0% |
| TGACTCCATAAGAGTAAAAT+TGG | + | chr8_1:7072663-7072682 | None:intergenic | 30.0% | |
| AGAATTCTTTCATTCAAACG+GGG | + | chr8_1:7072785-7072804 | None:intergenic | 30.0% | |
| GAATTCTTTCATCTTTGTCA+AGG | - | chr8_1:7072798-7072817 | Msa1175600:intron | 30.0% | |
| ATGCACAAATCAAGCTAAAT+AGG | + | chr8_1:7072894-7072913 | None:intergenic | 30.0% | |
| TATGAACTTGACAAAAAGAC+TGG | - | chr8_1:7073142-7073161 | Msa1175600:intron | 30.0% | |
| GTTGTTTATCCTCATAACTA+CGG | - | chr8_1:7073287-7073306 | Msa1175600:intron | 30.0% | |
| TTCTGAATTACTTATATGGC+AGG | - | chr8_1:7073532-7073551 | Msa1175600:intron | 30.0% | |
| AGAAATACCTGATCAATCAT+AGG | + | chr8_1:7073608-7073627 | None:intergenic | 30.0% | |
| TATTATCATACTTACACAGG+GGG | - | chr8_1:7073691-7073710 | Msa1175600:intron | 30.0% | |
| CCAAAAAAGTCAATCCAAAT+AGG | + | chr8_1:7074014-7074033 | None:intergenic | 30.0% | |
| !!! | CCTATTTGGATTGACTTTTT+TGG | - | chr8_1:7074011-7074030 | Msa1175600:intron | 30.0% |
| ! | GGACATTTTATGAGTTGTTT+CGG | + | chr8_1:7074084-7074103 | None:intergenic | 30.0% |
| CAAAAGGACAAAGATATGTT+TGG | + | chr8_1:7074282-7074301 | None:intergenic | 30.0% | |
| AGACAAAAAGAATGAGAACA+AGG | - | chr8_1:7074331-7074350 | Msa1175600:intron | 30.0% | |
| TGTATACTTACATTGAGTGT+TGG | + | chr8_1:7074406-7074425 | None:intergenic | 30.0% | |
| TTTATCATCTATGGCCAAAA+AGG | - | chr8_1:7074493-7074512 | Msa1175600:intron | 30.0% | |
| !!! | TTTTTTTTTTGTGGTGTCTG+GGG | + | chr8_1:7074614-7074633 | None:intergenic | 30.0% |
| TCGTATGAGTTTACCATCAT+AGG | - | chr8_1:7071905-7071924 | Msa1175600:three_prime_UTR | 35.0% | |
| ! | TTGCTAGTTTCAACCTATGA+TGG | + | chr8_1:7071921-7071940 | None:intergenic | 35.0% |
| CAAGAACTGTCATTATACAG+TGG | + | chr8_1:7071990-7072009 | None:intergenic | 35.0% | |
| CTAATAAGGGTCTTTGGATT+TGG | - | chr8_1:7072261-7072280 | Msa1175600:intron | 35.0% | |
| AATCGAACGTCAAACTTACT+AGG | + | chr8_1:7072461-7072480 | None:intergenic | 35.0% | |
| AGTAAGTTTGACGTTCGATT+TGG | - | chr8_1:7072461-7072480 | Msa1175600:intron | 35.0% | |
| TCTCCGAAATCTGTATATTG+CGG | - | chr8_1:7072567-7072586 | Msa1175600:intron | 35.0% | |
| CAATTTCAAGATCATGCCAA+GGG | + | chr8_1:7072841-7072860 | None:intergenic | 35.0% | |
| ! | TAATTTTCATGTGAAGGTCC+TGG | - | chr8_1:7072963-7072982 | Msa1175600:CDS | 35.0% |
| !! | TTGAAAATATTTGGTGCACC+AGG | + | chr8_1:7072984-7073003 | None:intergenic | 35.0% |
| ! | AATGATTAGTTGCTACATGC+AGG | - | chr8_1:7073087-7073106 | Msa1175600:intron | 35.0% |
| CTTTAATGCTTCCAATGTTC+AGG | - | chr8_1:7073241-7073260 | Msa1175600:intron | 35.0% | |
| ACTAATGCCTATGATTGATC+AGG | - | chr8_1:7073598-7073617 | Msa1175600:CDS | 35.0% | |
| GAAGGATGATAAAATCATCG+CGG | - | chr8_1:7073715-7073734 | Msa1175600:intron | 35.0% | |
| TCAGTATAGTGCTTATACTC+CGG | + | chr8_1:7073755-7073774 | None:intergenic | 35.0% | |
| !! | AGAAGCGTTTAATCTCCATT+AGG | + | chr8_1:7073802-7073821 | None:intergenic | 35.0% |
| ATGTTGCATAACAAGCTCAT+TGG | - | chr8_1:7073859-7073878 | Msa1175600:intron | 35.0% | |
| ATAGGCACTTAATGTGTGTT+TGG | + | chr8_1:7073996-7074015 | None:intergenic | 35.0% | |
| ACACACATTAAGTGCCTATT+TGG | - | chr8_1:7073997-7074016 | Msa1175600:CDS | 35.0% | |
| TAAGCATTTGTGAGACAGTT+TGG | - | chr8_1:7074049-7074068 | Msa1175600:intron | 35.0% | |
| AAGGACAAAGATATGTTTGG+AGG | + | chr8_1:7074279-7074298 | None:intergenic | 35.0% | |
| CAAAAAGAATGAGAACAAGG+AGG | - | chr8_1:7074334-7074353 | Msa1175600:intron | 35.0% | |
| !! | TACTTACATTGAGTGTTGGA+TGG | + | chr8_1:7074402-7074421 | None:intergenic | 35.0% |
| TACTAACTGAGATAAGCTCA+CGG | + | chr8_1:7074553-7074572 | None:intergenic | 35.0% | |
| TGAGCTTATCTCAGTTAGTA+AGG | - | chr8_1:7074553-7074572 | Msa1175600:intron | 35.0% | |
| AGTATATTCTGCATACCTTG+AGG | - | chr8_1:7074710-7074729 | Msa1175600:intron | 35.0% | |
| TATTCTTGTCTATCTCCTCA+AGG | + | chr8_1:7074728-7074747 | None:intergenic | 35.0% | |
| TGTTGTTAGCCAAAATCTTG+TGG | - | chr8_1:7074945-7074964 | Msa1175600:five_prime_UTR | 35.0% | |
| ! | TTTGGACTAGGCCTAGATAT+TGG | - | chr8_1:7072279-7072298 | Msa1175600:intron | 40.0% |
| !! | GTTTTAACAACCGAATCGGA+CGG | - | chr8_1:7072325-7072344 | Msa1175600:intron | 40.0% |
| !! | GTTCAAGTTGAACTGTGAAC+CGG | - | chr8_1:7072347-7072366 | Msa1175600:intron | 40.0% |
| TTATTTGAGTGGTTCAACCG+TGG | - | chr8_1:7072387-7072406 | Msa1175600:CDS | 40.0% | |
| GAACCATTCAAAACAGAACG+AGG | + | chr8_1:7072413-7072432 | None:intergenic | 40.0% | |
| CAAAGTAGTTGTACCATGAC+TGG | - | chr8_1:7072432-7072451 | Msa1175600:intron | 40.0% | |
| AACCAATGCAACTGCAATTG+TGG | - | chr8_1:7072524-7072543 | Msa1175600:intron | 40.0% | |
| GGTCCGCAATATACAGATTT+CGG | + | chr8_1:7072573-7072592 | None:intergenic | 40.0% | |
| TTTCATTCAAACGGGGAGTT+GGG | + | chr8_1:7072778-7072797 | None:intergenic | 40.0% | |
| CCAATTTCAAGATCATGCCA+AGG | + | chr8_1:7072842-7072861 | None:intergenic | 40.0% | |
| CCTTGGCATGATCTTGAAAT+TGG | - | chr8_1:7072839-7072858 | Msa1175600:intron | 40.0% | |
| CAGGTTGTAGAGATCACTAA+GGG | - | chr8_1:7073106-7073125 | Msa1175600:intron | 40.0% | |
| AGAGATCACTAAGGGAAGTA+AGG | - | chr8_1:7073114-7073133 | Msa1175600:intron | 40.0% | |
| !! | CTTCCAATGTTCAGGTTGAT+CGG | - | chr8_1:7073249-7073268 | Msa1175600:intron | 40.0% |
| AATCCGATCAACCTGAACAT+TGG | + | chr8_1:7073255-7073274 | None:intergenic | 40.0% | |
| GGGATAAAACCGTAGTTATG+AGG | + | chr8_1:7073299-7073318 | None:intergenic | 40.0% | |
| TGTCTTCACATAGAGTTCGA+GGG | + | chr8_1:7073319-7073338 | None:intergenic | 40.0% | |
| TTGTCTTCACATAGAGTTCG+AGG | + | chr8_1:7073320-7073339 | None:intergenic | 40.0% | |
| ATAGGTCACAACTCACAACA+AGG | + | chr8_1:7073385-7073404 | None:intergenic | 40.0% | |
| CATAACAATAGTTCCGGTTC+TGG | - | chr8_1:7073416-7073435 | Msa1175600:CDS | 40.0% | |
| ! | TCGATATTTCTGTCCAGAAC+CGG | + | chr8_1:7073432-7073451 | None:intergenic | 40.0% |
| AATCATAGGCATTAGTCCGA+TGG | + | chr8_1:7073594-7073613 | None:intergenic | 40.0% | |
| TTAATCTCCATTAGGCGATG+AGG | + | chr8_1:7073794-7073813 | None:intergenic | 40.0% | |
| !!! | TTTTGTCTCTGATTTGGTGC+AGG | - | chr8_1:7074674-7074693 | Msa1175600:intron | 40.0% |
| !! | TTTGTCTCTGATTTGGTGCA+GGG | - | chr8_1:7074675-7074694 | Msa1175600:intron | 40.0% |
| AGGGTCTTTGGATTTGGACT+AGG | - | chr8_1:7072267-7072286 | Msa1175600:intron | 45.0% | |
| TCAACTTGAACCGTCCGATT+CGG | + | chr8_1:7072338-7072357 | None:intergenic | 45.0% | |
| TTCAAAACAGAACGAGGCCA+CGG | + | chr8_1:7072407-7072426 | None:intergenic | 45.0% | |
| !! | TGGCCTCGTTCTGTTTTGAA+TGG | - | chr8_1:7072407-7072426 | Msa1175600:CDS | 45.0% |
| AGTAGTTGTACCATGACTGG+AGG | - | chr8_1:7072435-7072454 | Msa1175600:intron | 45.0% | |
| GACCACAATTGCAGTTGCAT+TGG | + | chr8_1:7072529-7072548 | None:intergenic | 45.0% | |
| CTTTCATTCAAACGGGGAGT+TGG | + | chr8_1:7072779-7072798 | None:intergenic | 45.0% | |
| GCAGAAACAGCATAACACAG+TGG | + | chr8_1:7073061-7073080 | None:intergenic | 45.0% | |
| GCAGGTTGTAGAGATCACTA+AGG | - | chr8_1:7073105-7073124 | Msa1175600:intron | 45.0% | |
| CAATGATCCACTCGATGTCT+TGG | - | chr8_1:7073337-7073356 | Msa1175600:intron | 45.0% | |
| ATGAGAACCAAGACATCGAG+TGG | + | chr8_1:7073347-7073366 | None:intergenic | 45.0% | |
| AGGAAACAACCAGGAAGAAC+AGG | + | chr8_1:7073560-7073579 | None:intergenic | 45.0% | |
| ACTTCAACCTCATCGCCTAA+TGG | - | chr8_1:7073784-7073803 | Msa1175600:intron | 45.0% | |
| ATGGCTTCAACAGCAGTAGA+TGG | + | chr8_1:7074383-7074402 | None:intergenic | 45.0% | |
| !!! | ATTTTCTATTTTTAAATTTT+TGG | - | chr8_1:7073934-7073953 | Msa1175600:CDS | 5.0% |
| ACTTACTAGGCCTCCAGTCA+TGG | + | chr8_1:7072448-7072467 | None:intergenic | 50.0% | |
| ! | CGATGTCTTGGTTCTCATGC+AGG | - | chr8_1:7073349-7073368 | Msa1175600:intron | 50.0% |
| CATACTTACACAGGGGGAGA+AGG | - | chr8_1:7073697-7073716 | Msa1175600:intron | 50.0% | |
| GCTTCAACAGCAGTAGATGG+TGG | + | chr8_1:7074380-7074399 | None:intergenic | 50.0% | |
| ATTCAAACGGGGAGTTGGGC+GGG | + | chr8_1:7072774-7072793 | None:intergenic | 55.0% | |
| CATTCAAACGGGGAGTTGGG+CGG | + | chr8_1:7072775-7072794 | None:intergenic | 55.0% | |
| GATCAGTTGCTGCTCACCCT+TGG | - | chr8_1:7072822-7072841 | Msa1175600:intron | 55.0% | |
| CTTGCTCGCAGGAAACAACC+AGG | + | chr8_1:7073569-7073588 | None:intergenic | 55.0% | |
| TTCCTGCGAGCAAGAGCCAT+CGG | - | chr8_1:7073575-7073594 | Msa1175600:intron | 55.0% | |
| TGGCAGGAGCCTGTTCTTCC+TGG | - | chr8_1:7073548-7073567 | Msa1175600:intron | 60.0% | |
| ! | CGCGGTATGCGCTGATGATC+CGG | - | chr8_1:7073733-7073752 | Msa1175600:intron | 60.0% |
| GTCCGATGGCTCTTGCTCGC+AGG | + | chr8_1:7073580-7073599 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 7071773 | 7074990 | 7071773 | ID=Msa1175600;Name=Msa1175600 |
| chr8_1 | mRNA | 7071773 | 7074990 | 7071773 | ID=Msa1175600-mRNA-1;Parent=Msa1175600;Name=Msa1175600-mRNA-1;_AED=0.15;_eAED=0.15;_QI=52|1|1|1|0.87|0.88|9|252|212 |
| chr8_1 | exon | 7071773 | 7072067 | 7071773 | ID=Msa1175600-mRNA-1:exon:2534;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7072349 | 7072430 | 7072349 | ID=Msa1175600-mRNA-1:exon:2533;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7072933 | 7073053 | 7072933 | ID=Msa1175600-mRNA-1:exon:2532;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7073144 | 7073209 | 7073144 | ID=Msa1175600-mRNA-1:exon:2531;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7073393 | 7073500 | 7073393 | ID=Msa1175600-mRNA-1:exon:2530;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7073589 | 7073654 | 7073589 | ID=Msa1175600-mRNA-1:exon:2529;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7073756 | 7073784 | 7073756 | ID=Msa1175600-mRNA-1:exon:2528;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7073903 | 7074026 | 7073903 | ID=Msa1175600-mRNA-1:exon:2527;Parent=Msa1175600-mRNA-1 |
| chr8_1 | exon | 7074939 | 7074990 | 7074939 | ID=Msa1175600-mRNA-1:exon:2526;Parent=Msa1175600-mRNA-1 |
| chr8_1 | five_prime_UTR | 7074939 | 7074990 | 7074939 | ID=Msa1175600-mRNA-1:five_prime_utr;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7073903 | 7074026 | 7073903 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7073756 | 7073784 | 7073756 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7073589 | 7073654 | 7073589 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7073393 | 7073500 | 7073393 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7073144 | 7073209 | 7073144 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7072933 | 7073053 | 7072933 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7072349 | 7072430 | 7072349 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | CDS | 7072025 | 7072067 | 7072025 | ID=Msa1175600-mRNA-1:cds;Parent=Msa1175600-mRNA-1 |
| chr8_1 | three_prime_UTR | 7071773 | 7072024 | 7071773 | ID=Msa1175600-mRNA-1:three_prime_utr;Parent=Msa1175600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
